Citrus Sinensis ID: 003716
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STT5 | 935 | ABC transporter A family | yes | no | 0.96 | 0.821 | 0.632 | 0.0 | |
| Q1PEH6 | 932 | ABC transporter A family | no | no | 0.953 | 0.818 | 0.591 | 0.0 | |
| Q8LPK0 | 901 | ABC transporter A family | no | no | 0.925 | 0.821 | 0.602 | 0.0 | |
| Q9STT7 | 936 | ABC transporter A family | no | no | 0.953 | 0.815 | 0.586 | 0.0 | |
| Q9STT8 | 937 | ABC transporter A family | no | no | 0.956 | 0.816 | 0.586 | 0.0 | |
| Q9STT6 | 926 | ABC transporter A family | no | no | 0.951 | 0.821 | 0.570 | 0.0 | |
| Q9FLT8 | 917 | ABC transporter A family | no | no | 0.933 | 0.814 | 0.586 | 0.0 | |
| Q9FLT4 | 909 | ABC transporter A family | no | no | 0.926 | 0.815 | 0.567 | 0.0 | |
| Q54DT1 | 845 | ABC transporter A family | yes | no | 0.577 | 0.546 | 0.315 | 7e-54 | |
| Q8T6J0 | 839 | ABC transporter A family | no | no | 0.533 | 0.508 | 0.309 | 7e-47 |
| >sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/781 (63%), Positives = 610/781 (78%), Gaps = 13/781 (1%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYK 66
P PASF T+ NALLRKNLT+QKRN+ +NIRLI+ PF LC+++V++Q+L D V+NS D +
Sbjct: 4 PGPASFSTRANALLRKNLTYQKRNLWSNIRLIMIPFYLCILLVIIQILFDTQVNNSADNR 63
Query: 67 CGCNCV-RKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
CGC C+ R C E CG+E+S P QA FC IPRPP WPP+LQ+P PE R VR
Sbjct: 64 CGCECIERNRAGKCQRELCGLEHSKPDQAFFCSIPRPPLWPPLLQIPRPESRDVRG---- 119
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSD 185
L ++SCR GSCP TIL TGNN+S G T+++++F + S N S+++ +LA+NVLG+
Sbjct: 120 ---LRDDSCRRTGSCPVTILFTGNNRSLGTTVSENLFTSSVSANASEILRTLANNVLGTT 176
Query: 186 SKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSS 245
+ + TNY++P S+ IY IQ +C +++F + + +RC+QG NLW +S
Sbjct: 177 VEADFTNYLDPGIASNLSIYNIQPRCILNATFPFSFEQPPLKFEKELRCVQGSNLWTNTS 236
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLR 305
E+ND++++G++KGN + + NEI AAYD LN+D FNV+IWYNSTYK+D GN I L+R
Sbjct: 237 KEVNDKIFKGYKKGNPEGKINEIAAAYDLLNTDRNNFNVHIWYNSTYKDDAGNRLIKLIR 296
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
VPRS+NL SNAYL+ L GPGT++LF++VKEMPK ++ L+LD++S+IG LFFTWV+L LFP
Sbjct: 297 VPRSVNLVSNAYLQFLQGPGTRMLFEYVKEMPKPETSLRLDIASLIGPLFFTWVILLLFP 356
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
VIL++LVYEKQQ LRI+MKMHGLGDGPYW+ISYAYF IS +Y++C ++FGS IGL+FF
Sbjct: 357 VILSSLVYEKQQHLRIIMKMHGLGDGPYWMISYAYFLTISVLYVICLMIFGSAIGLKFFR 416
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
LNSY IQFVFY +Y+NLQIALAFLV+++FS VKT++V YI VFG+GLLG FLL +ED
Sbjct: 417 LNSYSIQFVFYFLYLNLQIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLIED 476
Query: 486 PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIM 545
SFPR WI MELYPGF+LYRGLYE ++FRG+ G DGM W D DS M +V I+
Sbjct: 477 SSFPRGWIIVMELYPGFSLYRGLYELAQFAFRGNLRGEDGMKWKDFGDS--AMDDVFYII 534
Query: 546 FVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKP 605
VEW L L AYY+DKI SSG + PL+FLQN KKS S R+PSL RQ SKV V MEKP
Sbjct: 535 VVEWFLALIAAYYIDKISSSG--RNPLFFLQNPFKKS-PSLRRPSLQRQGSKVSVDMEKP 591
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
DVT E ++VE+L+LE TSHAI+ DNL+K+YPGRDGNP K+AV GLSLA+PSGECFGMLG
Sbjct: 592 DVTHESKKVERLMLESSTSHAIVCDNLKKVYPGRDGNPPKLAVRGLSLAVPSGECFGMLG 651
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725
PNGAGKT+FI+MM G+ + TSGTA VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREH
Sbjct: 652 PNGAGKTSFINMMTGLLKPTSGTALVQGLDICNDMDRVYTSMGVCPQHDLLWETLTGREH 711
Query: 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
LLFYGRLKNLKG L QAVEESLKSVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPK
Sbjct: 712 LLFYGRLKNLKGADLNQAVEESLKSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPK 771
Query: 786 V 786
V
Sbjct: 772 V 772
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEH6|AB3A_ARATH ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/779 (59%), Positives = 586/779 (75%), Gaps = 16/779 (2%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF T+ NA+LRKNLT+QKRN+ +N+RLI+ PF LC+++V +Q L D V+NS D +CG
Sbjct: 6 PASFWTRANAILRKNLTYQKRNIWSNVRLIMIPFYLCIVLVFIQALFDSQVNNSLDNQCG 65
Query: 69 CNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
C C+ K G + CG+EYST Q FC IP+P WPP++ +P PEYRA+ +F
Sbjct: 66 CQCIDKLGDGKCQMTCGLEYSTRDQGFFCAIPKPQPWPPLILIPRPEYRALDANF----- 120
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
N+SCR SCP TIL TGNN S G L++++ + F+ N SD++ SLA+NVL + K
Sbjct: 121 -TNDSCRRKNSCPVTILFTGNNHSLGAVLSRNLLRRPFAMNSSDLLFSLANNVLATTFKG 179
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEI 248
TNY++ VSD IY IQ +C P+S+F + + + +N + +RC+QGLNLWR +S E+
Sbjct: 180 SATNYLDAGIVSDGSIYNIQPRCPPNSNFSISIGQSPLNFTKDMRCVQGLNLWRNNSIEV 239
Query: 249 NDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPR 308
N EL+ G+ KGNS NEI+AAYD ++++ FNVNIW+N+TYK++ N P ++RVPR
Sbjct: 240 NLELFEGYHKGNSDGMINEIVAAYDLFDTNMTNFNVNIWFNATYKDEARNQPYKVVRVPR 299
Query: 309 SINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVIL 368
+N SNAYL+ L GP T++LF+FVKEMPK ++KL+LD++S+IG +FFTWV+L L PVIL
Sbjct: 300 LVNWVSNAYLQYLQGPRTKMLFEFVKEMPKPETKLRLDIASLIGPIFFTWVILLLLPVIL 359
Query: 369 TALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNS 428
+LVYEKQQ+LRI+MKMHGLGDGPYW+ISYAYF +S+ Y++ ++FGSVIGL+FF LN
Sbjct: 360 NSLVYEKQQRLRIIMKMHGLGDGPYWIISYAYFLALSTFYIIFLMIFGSVIGLKFFLLND 419
Query: 429 YGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSF 488
+ +QF FY +YINLQI++AFL+++ FS V+TASV Y+ VFG+GLLG FL Q +E SF
Sbjct: 420 FSLQFSFYFVYINLQISIAFLLSSAFSKVETASVAAYLYVFGSGLLGMFLFQFLLEGLSF 479
Query: 489 PRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVE 548
PRRWI MELYPGF+LYRGLYEF +++G+ G DGM W SD N + EV I+ VE
Sbjct: 480 PRRWIFVMELYPGFSLYRGLYEFSQNAYQGNLNGKDGMKWKYFSD--NAIDEVFYIIIVE 537
Query: 549 WLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFR-KPSLGRQDSKVFVSMEKPDV 607
W + L YY+DK+ SSG K L+FL+N ++ F+ SL +Q S + V MEK DV
Sbjct: 538 WFVALIATYYIDKMSSSG--KDLLFFLKN-----QNPFKISHSLQKQVSAISVEMEKLDV 590
Query: 608 TQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPN 667
E E+V QL+LE TSHAI+ D LRK+YPGRDGNP K AV LSLA+PSGECFGMLGPN
Sbjct: 591 IHESEKVAQLMLESSTSHAIVCDKLRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPN 650
Query: 668 GAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727
GAGKT+FI+MM G+ + TSG A+VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREHLL
Sbjct: 651 GAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLL 710
Query: 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
FYGRLKNLKG L QAVEESL+SVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPKV
Sbjct: 711 FYGRLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/778 (60%), Positives = 572/778 (73%), Gaps = 38/778 (4%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF TQ +ALLRKNL FQKRN+ +NIRLI PF LC++++++Q+L D N +CG
Sbjct: 6 PASFLTQADALLRKNLVFQKRNIWSNIRLITIPFFLCLLLLVIQMLFDTQF-NDVHGQCG 64
Query: 69 CNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
CN E+ CG+ YST +QA FC IP PPQW P+LQ+PAPEYRA + YP
Sbjct: 65 CN----------EKTCGLRYSTSEQAAFCAIPNPPQWTPLLQIPAPEYRAA----IPYPS 110
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
+ PAT L TGNNQS G L +M+ N S LA VLGS S
Sbjct: 111 ---------HTSPATFLFTGNNQSLGNILMGNMY-----SNSSGFDGDLAYYVLGSSSFP 156
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEI 248
TN+++ AF+SD PIY IQ +C P+SSF + + + + + C+QGLNLWR SSS++
Sbjct: 157 AYTNHMDSAFISDLPIYNIQHECSPNSSFSILIHQSPLAFPKEVNCVQGLNLWRNSSSDV 216
Query: 249 NDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPR 308
N+EL++G+RKGN ++ NE A+DF N++ NV++WYNSTYKNDT P+ L+RVPR
Sbjct: 217 NNELFKGYRKGNPDKKINEFAGAFDFQNTNGNNLNVSVWYNSTYKNDTVVRPMALIRVPR 276
Query: 309 SINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVIL 368
+NLASNAYL L G T+ILF++VKEMPK ++KL LD++S+IG LFFTWV+L LFPVIL
Sbjct: 277 LVNLASNAYLEFLKGSETKILFEYVKEMPKPETKLSLDIASLIGPLFFTWVILLLFPVIL 336
Query: 369 TALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNS 428
T LVYEKQQ+LRIMMKMHGLGD PYW++SY YF IS +YMLCF +FGS+IGL FF LN
Sbjct: 337 TTLVYEKQQRLRIMMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIFGSLIGLNFFRLND 396
Query: 429 YGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSF 488
Y IQ VF+ I INLQI++AFL +A+FS+VKTA+VI YI VFGTGLLG FL Q F+EDP F
Sbjct: 397 YSIQLVFFFICINLQISVAFLASAMFSDVKTATVIAYIYVFGTGLLGIFLFQFFLEDPLF 456
Query: 489 PRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVE 548
PR WI AMELYPGF+LYRGLYE +F G G DGM W D NGMKEV IM +E
Sbjct: 457 PRGWIIAMELYPGFSLYRGLYELSQSAFAGDYRGIDGMKWRDFG---NGMKEVTCIMLIE 513
Query: 549 WLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVT 608
WLLLLG+AYY+D+I+ S K PL+FL K + F + SKV V MEKPDV
Sbjct: 514 WLLLLGLAYYIDQIIYS--RKHPLFFLLQSTSKKKQHFSDNKI----SKVVVEMEKPDVC 567
Query: 609 QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNG 668
+ERE+VEQ LL+ A++ +NL+K+Y G+DGNP+K+AV GLSLALP GECFGMLGPNG
Sbjct: 568 REREKVEQCLLKSTRDSAVLCNNLKKVYSGKDGNPQKLAVRGLSLALPQGECFGMLGPNG 627
Query: 669 AGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728
AGKT+FI+MM GI + +SGTA+VQGLDI TDMDRIYT++GVCPQ DLLWE L+GREHLLF
Sbjct: 628 AGKTSFINMMTGIIKPSSGTAFVQGLDILTDMDRIYTTIGVCPQHDLLWEKLSGREHLLF 687
Query: 729 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
YGRLKNLKG LTQAVEESL+SVNLFHGG+ DKQ KYSGGMKRRLSVAISLIG+PKV
Sbjct: 688 YGRLKNLKGSVLTQAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKV 745
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT7|AB5A_ARATH ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/783 (58%), Positives = 589/783 (75%), Gaps = 20/783 (2%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PA F TQ N+L RKNLT+QKRN+ +N+RLI+ PF LCV++V +QVL D V+NS D +CG
Sbjct: 6 PAGFFTQANSLFRKNLTYQKRNIWSNVRLIVIPFYLCVLLVGIQVLFDTQVNNSADNRCG 65
Query: 69 CNCVRKSGS-DCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYP 127
C C+ K+G C ++ CG++YS+ QA FC P PP P+L +P PE R+ D
Sbjct: 66 CRCIDKNGDGKCGQKSCGLQYSSQNQAFFCAFPNPPPLLPLLHIPRPETRSSDRD----- 120
Query: 128 DLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDV-MASLADNVLGSDS 186
+SCR GSCP TILLTGNN S G T+++++ +F+ N SD+ + +LA NVLG+ S
Sbjct: 121 ---RDSCRQTGSCPVTILLTGNNHSLGTTISRNLLSTSFAMNSSDLFLRNLAYNVLGTTS 177
Query: 187 KTEITNYVEPAFVSDSPIYTIQSQCRPDSS-FVVPVKVASINISLVIRCLQGLNLWRKSS 245
K + TNY++P +SD PI+ +Q +C PD++ F P + + + +RC++GLNLWR +S
Sbjct: 178 KADYTNYLDPGILSDLPIFNVQPRCTPDTTTFSFPFRQSPLEFHKEVRCVEGLNLWRNNS 237
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLR 305
EI++E+++G+R+GN + NE+ AAYD +++D+ FNV IWYNSTYK D + + +R
Sbjct: 238 IEISNEIFKGYRQGNLEEIINEVAAAYDLMDTDINNFNVTIWYNSTYKGDLRDRRVKYVR 297
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
VPRS+NL SNAYL L G GT++LFDFVKEMPK +++L+L+++S+IG +FFTWV+L LFP
Sbjct: 298 VPRSVNLVSNAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILLLFP 357
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
V+LT+LVYEKQQ LRI+MKMHGLGDGPYW+I+YAYF IS +Y++C ++FGS IGL+FF
Sbjct: 358 VMLTSLVYEKQQHLRIIMKMHGLGDGPYWMITYAYFLAISIVYIICLMIFGSAIGLKFFR 417
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
N Y IQF+FY + INLQI++AFLV++ FS ++TASV Y+ VFG+GLLGAFL Q +E
Sbjct: 418 FNDYSIQFIFYFLCINLQISIAFLVSSAFSKIETASVAAYLYVFGSGLLGAFLFQFLLEG 477
Query: 486 PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIM 545
SFPR WI MELYPGF+LYRGLYEF Y+F+ + G+ GM W D +DS M+E+ I+
Sbjct: 478 LSFPRSWIYIMELYPGFSLYRGLYEFSQYAFKRNLNGSGGMKWKDFNDS--AMEEIFYII 535
Query: 546 FVEWLLLLGIAYYVDKILSSGGAKGPLYFL--QNFKKKSRSSFRKPSLGRQDSKVFVSME 603
VEW + L AYY DKI SSG P +FL QN KKS S + L RQ S + + ME
Sbjct: 536 IVEWFVALIAAYYTDKISSSG--IDPFFFLKNQNPFKKSPSPY---GLQRQVSAIAIEME 590
Query: 604 KPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGM 663
K DV ER +VEQL+LE T HAI+ DNL+K+YP RDGNP+K+AV GLSLA+PSGECFGM
Sbjct: 591 KLDVAHERVKVEQLMLETSTGHAIVCDNLKKVYPCRDGNPQKMAVRGLSLAVPSGECFGM 650
Query: 664 LGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723
LGPNGAGKT+FI+MM G+ + TSG A+V GLDI DMD +YTS+GVCPQ DLLWETLTGR
Sbjct: 651 LGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLWETLTGR 710
Query: 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783
EHLLFYGRLKNLKG L QAVEESLKSVNLF GGVADK AGKYSGGMKRRLSVAISLIG+
Sbjct: 711 EHLLFYGRLKNLKGSDLDQAVEESLKSVNLFRGGVADKPAGKYSGGMKRRLSVAISLIGS 770
Query: 784 PKV 786
PKV
Sbjct: 771 PKV 773
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT8|AB4A_ARATH ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/782 (58%), Positives = 579/782 (74%), Gaps = 17/782 (2%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF T+ NAL RKNLT+QKRN+ +N+RLI+ PF LCV++V +QVL D V+NS D +CG
Sbjct: 6 PASFLTRANALFRKNLTYQKRNIWSNVRLIVIPFYLCVLLVGIQVLFDTQVNNSADNRCG 65
Query: 69 CNCVRKSGS-DCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYP 127
C C+ K+G C + CG++YS+ QA FC P PP P+LQ+P PE R V
Sbjct: 66 CRCIHKNGDGKCERKSCGLQYSSLTQASFCAFPNPPPLLPLLQIPRPETRLV-------- 117
Query: 128 DLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSD-VMASLADNVLGSDS 186
D SCR GSCP TIL+TGNN + G+TL++++ +F+ N SD + +LA NVLG+ S
Sbjct: 118 DPARSSCRRTGSCPVTILVTGNNHTLGETLSRNLLSTSFAVNSSDHFLRNLAYNVLGTIS 177
Query: 187 KTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSS 246
+ + TNY++P SD PI+ I+ C P ++ + I +RC+QGLNLWR +S
Sbjct: 178 EADYTNYLDPGIHSDLPIFQIRPYCTPTTNLSFSFRQPPITFHKEVRCVQGLNLWRNNSV 237
Query: 247 EINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKND--TGNVPIGLL 304
E+NDE+++G+R+GN + NE+ AAYD L++D KFNV IWYNS+YK + + + +
Sbjct: 238 EVNDEIFKGYRQGNHEEIINEVAAAYDLLDTDRNKFNVTIWYNSSYKGNFKVQDRRVKYV 297
Query: 305 RVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLF 364
RVPRS+N+ SNAYLR L GPGT++LFDFVKEMPK +S L++D++S+IG +F TWV++ LF
Sbjct: 298 RVPRSVNMVSNAYLRFLRGPGTKMLFDFVKEMPKQESMLRVDIASVIGPIFLTWVIVLLF 357
Query: 365 PVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFF 424
PVIL +LVYEKQQ LRI+MKMHGLGDGPYW+I+YAYF IS++Y++C ++FGS IGL+FF
Sbjct: 358 PVILNSLVYEKQQHLRIIMKMHGLGDGPYWMITYAYFLAISTLYIICLMIFGSAIGLKFF 417
Query: 425 TLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVE 484
N Y IQF+FY + INLQI++AFLV++ FS V+TASV Y+ VFG+GLLG FL Q +E
Sbjct: 418 RFNDYSIQFIFYFLCINLQISIAFLVSSAFSKVETASVAAYLYVFGSGLLGGFLFQFMLE 477
Query: 485 DPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLII 544
SFPR WI MELYPGF+LYRGLYEF Y+ + G+DGM W SDS M EV I
Sbjct: 478 GLSFPRGWIFVMELYPGFSLYRGLYEFSQYALKRQLNGSDGMKWKYFSDS--AMDEVFYI 535
Query: 545 MFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEK 604
+ +EW L L AYY+D++ SS AK P FL+N KKS S R SL R S V V MEK
Sbjct: 536 IIIEWFLALIAAYYMDRVSSS--AKDPFLFLKNLIKKSPSPQRH-SLQRLGSSVSVEMEK 592
Query: 605 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 664
DV +ER +VEQL+LE TSHAI+ D L+K+YPGRDGNP K+AV GLS+A+P GECFGML
Sbjct: 593 LDVVEERAKVEQLMLESSTSHAIVCDKLKKVYPGRDGNPPKMAVGGLSIAVPPGECFGML 652
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
GPNGAGKT+FI+MM G+ + TSGTA V+ LDI DMD++YTSMGVCPQ DLLWETLTGRE
Sbjct: 653 GPNGAGKTSFINMMTGLVKPTSGTALVESLDICQDMDKVYTSMGVCPQHDLLWETLTGRE 712
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
HLLFYGRLKNLKG L QA+EESLKSVNL GVADK AGKYSGGMKRRLSVAISLIG+P
Sbjct: 713 HLLFYGRLKNLKGSDLNQAIEESLKSVNLSREGVADKPAGKYSGGMKRRLSVAISLIGSP 772
Query: 785 KV 786
KV
Sbjct: 773 KV 774
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STT6|AB6A_ARATH ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/785 (57%), Positives = 572/785 (72%), Gaps = 24/785 (3%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYK 66
P ASF TQ NAL +KNLT+QKRN+ +N+RLI+ P LCV++V +Q + D +V+NS D +
Sbjct: 4 PVAASFLTQANALFKKNLTYQKRNIWSNVRLIVIPLYLCVVLVCIQAVFDSLVNNSVDNQ 63
Query: 67 CGCNCV---RKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDF 123
CGC C + C + CG++YS+ QA FC P PP P+L +P R
Sbjct: 64 CGCRCADDDKNGDGKCEIKSCGLQYSSQNQAVFCAFPNPPPLLPLLHIPPSVNR------ 117
Query: 124 LTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSD--VMASLADNV 181
+SC+ GSCP TIL+TGNNQS G TL++++ +F+ N S + +LA NV
Sbjct: 118 --------DSCQRTGSCPVTILVTGNNQSLGTTLSENLLSTSFTVNSSSDLFLRNLAYNV 169
Query: 182 LGSDSKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLW 241
L + S+T+ TNY +P SD PI+ IQ QC P + + + + +RC+QGLNLW
Sbjct: 170 LSTTSETDYTNYRDPGIYSDLPIFNIQPQCTPATILSLSFRQPPLEFHKEVRCVQGLNLW 229
Query: 242 RKSSSEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPI 301
R +S E+NDE+++GFRK N + NE+ AAYD LN+D KFNV IWY +TYK D + +
Sbjct: 230 RNNSLEVNDEIFKGFRKENHEEIINEVAAAYDLLNTDRNKFNVTIWYYTTYKGDLQDWRV 289
Query: 302 GLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVL 361
+RVPRS+N+ SNAYL+ L GPGT+ILFDFVKEMPK +++L++D++S+IG +FFTWV+L
Sbjct: 290 KYVRVPRSVNMVSNAYLQFLRGPGTKILFDFVKEMPKQETRLRMDMASLIGPIFFTWVIL 349
Query: 362 QLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGL 421
LFPVILT+LVYEKQQ+LRI+MKMHGLGD PYW+ISYAYF IS++Y++C ++FGS IGL
Sbjct: 350 LLFPVILTSLVYEKQQRLRIIMKMHGLGDAPYWMISYAYFLAISTLYIVCLMIFGSAIGL 409
Query: 422 RFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQS 481
+FF N Y IQF+FY +YINLQI++AFLV++ FS TASV+ YI VFG+GLLGAFL Q
Sbjct: 410 KFFRFNDYTIQFMFYFLYINLQISIAFLVSSAFSKAVTASVVAYIYVFGSGLLGAFLFQF 469
Query: 482 FVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEV 541
+E SFPRRWI MELYPGF+LYRGLYEF Y+F+ + G DGM W D S M EV
Sbjct: 470 LIESLSFPRRWIFVMELYPGFSLYRGLYEFSQYAFQRNLNGRDGMKWKDFRGS--AMDEV 527
Query: 542 LIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVS 601
I+ VEW++ L YY+D++ SS +K FL+N K S + + S ++ S V V
Sbjct: 528 FTIIIVEWVVALVATYYIDRVSSS--SKDTFAFLKNPFKLSPTP-QMLSFQKERSDVSVE 584
Query: 602 MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECF 661
MEK DV QE+E V+QL+ E +H I+ DNL+K+Y GRDGNP K+AV GLSLA+PSGECF
Sbjct: 585 MEKLDVIQEKETVKQLIFERSKNHGIVCDNLKKVYQGRDGNPPKLAVCGLSLAVPSGECF 644
Query: 662 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 721
GMLGPNGAGKT+FI+MM G+ + +SG+A+VQGLDI DMD++Y SMGVCPQ DLLWETLT
Sbjct: 645 GMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLT 704
Query: 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781
G+EHLLFYGRLKNLKG L QAVEESLKSVNLFHGGVAD AGKYSGGMKRRLSVAISLI
Sbjct: 705 GKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGGVADIPAGKYSGGMKRRLSVAISLI 764
Query: 782 GNPKV 786
G+PKV
Sbjct: 765 GSPKV 769
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/784 (58%), Positives = 576/784 (73%), Gaps = 37/784 (4%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSN-SDDY 65
P PASF TQ NALLRKNLT+Q++++ TN+RLIL P LC+I++ +Q +LD ++ SD
Sbjct: 4 PSPASFWTQANALLRKNLTYQRKHIWTNVRLILVPLFLCLILLAIQQVLDALMKGVSDMS 63
Query: 66 KCGCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
CG N G CPIP PP PPMLQ+P E R+V+ DF +
Sbjct: 64 NCGGNVTLPGG-------------------ICPIPNPPSLPPMLQIPQHELRSVKTDFFS 104
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSD 185
Y DLP++ CR GSCP TIL TG+ G+ L+ ++F +F N SD++ +LA+NVLGS
Sbjct: 105 YKDLPDKLCRETGSCPVTILFTGDKLPLGKALSANIFSTSFVVNSSDLLPTLANNVLGST 164
Query: 186 SKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSS 245
NY +P SD PIY+IQ C +S++ P+ + I + ++C+QGL LWR +S
Sbjct: 165 EAAGEDNYEDPGIASDLPIYSIQPSCSANSTW--PLSLGQIQTA--VKCVQGLCLWRNNS 220
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKND--TGNVPIGL 303
E+NDEL++G +GN NEI+AAYD +++D + FNV IWYNSTY ++ TG + L
Sbjct: 221 VEVNDELFKGSWRGNPAGMPNEIVAAYDLMSTDRKNFNVTIWYNSTYNDEFATGQA-LKL 279
Query: 304 LRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQL 363
+RVPRSINL SNAYL+ L GPGT+ILF+F+KE+PK ++K+ D++S++G LFFTWVVL L
Sbjct: 280 VRVPRSINLISNAYLKFLKGPGTRILFEFLKEVPKEETKMNQDIASLLGPLFFTWVVLLL 339
Query: 364 FPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRF 423
FPVILT+LVYEKQ++LRI+MKMHGLGDGPYW+ISYAYF IS +Y++ V FGS IGL++
Sbjct: 340 FPVILTSLVYEKQERLRIIMKMHGLGDGPYWMISYAYFLTISMLYVISLVGFGSAIGLKY 399
Query: 424 FTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFV 483
F N Y IQFVFY IY NLQI+LAFLV+++FS VKT +VI YI V+GTGLLG+FL Q +
Sbjct: 400 FRRNDYSIQFVFYFIYSNLQISLAFLVSSIFSKVKTVTVIAYILVYGTGLLGSFLFQKMI 459
Query: 484 EDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLI 543
E SFP WI AMELYPGF+LYRGLYEF Y+ RG +GM W DLSDS GM EV
Sbjct: 460 ETQSFPEEWILAMELYPGFSLYRGLYEFSQYASRG-----NGMKWQDLSDS--GMGEVFC 512
Query: 544 IMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSK-VFVSM 602
IM VEW L L +AYY+D++ +SG K P +FL N K S R+P++ R DSK VF+ M
Sbjct: 513 IMSVEWFLALIVAYYIDQVFTSG--KHPFFFLVNLFKSPSSLPRRPTVQRLDSKRVFIDM 570
Query: 603 EKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFG 662
+K DVTQERE V++L E T HAI+ DNL+K+YPGRDGNP K+AV GL L++ SGECFG
Sbjct: 571 DKHDVTQERESVQKLRNEGSTGHAILCDNLKKVYPGRDGNPPKMAVRGLYLSVSSGECFG 630
Query: 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722
MLGPNGAGKT+FISMM G+ + +SGTA VQGLDI DM+++YTSMGVCPQ DLLWETLTG
Sbjct: 631 MLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDICKDMNKVYTSMGVCPQHDLLWETLTG 690
Query: 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782
REHLLFYGRLKN+KG LTQAVEESLKSV+L+ GGV DK AG YSGGMKRRLSVAISLIG
Sbjct: 691 REHLLFYGRLKNIKGSDLTQAVEESLKSVSLYDGGVGDKPAGNYSGGMKRRLSVAISLIG 750
Query: 783 NPKV 786
NPKV
Sbjct: 751 NPKV 754
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabidopsis thaliana GN=ABCA10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/782 (56%), Positives = 559/782 (71%), Gaps = 41/782 (5%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDY- 65
P ASF Q NALLRKNLT+Q+R++ TNIRL+L P +LC+ ++ +Q+LLD VV+ + D
Sbjct: 4 PSQASFWAQANALLRKNLTYQRRHIWTNIRLVLVPLLLCLFLLGIQLLLDVVVNKAADLT 63
Query: 66 KCGCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
KCG G DC + Q PE RAV F +
Sbjct: 64 KCGSQDDFSIG-DCPIPNPPLLPPLLQIP------------------EPESRAVSGGFFS 104
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSD 185
Y DLP++SCR G+CP TILLTGNN S GQ L+ +MF +F+ N SD+++SLA NVLGS
Sbjct: 105 YNDLPDKSCRKTGTCPVTILLTGNNHSLGQALSGNMFGGSFAVNSSDLLSSLAYNVLGST 164
Query: 186 SKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSS 245
NY +P SD PIY+IQSQC P+S++ P+ I+ + + CLQGL+LWR +S
Sbjct: 165 LALGTNNYADPGIESDFPIYSIQSQCSPNSTW--PLSFGKIHTA--VTCLQGLSLWRNNS 220
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLR 305
E+NDEL++G KGN +R +NEI AAYD LN+D F+V IWYNST +D P L+R
Sbjct: 221 VEVNDELFKGNWKGNPERMTNEIAAAYDLLNTDRNNFDVTIWYNSTNIDDPSRAP--LVR 278
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
VPR +NL SNAYL+ L GPGT+ILF+FVKE+PK +K LD++S++G LFFTWVVL LFP
Sbjct: 279 VPRLLNLVSNAYLKFLKGPGTRILFEFVKEVPKHQTKFNLDIASMLGPLFFTWVVLLLFP 338
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
VILT+LVYEKQ++LRI+MKMHGLG GPYW+ISYAYF +S Y++ V+FGS IGLR+F
Sbjct: 339 VILTSLVYEKQERLRIIMKMHGLGIGPYWMISYAYFLTLSMFYVISLVIFGSAIGLRYFR 398
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
LN Y +QF+FY I++NLQI+ AFL +++FS VKTA+V+ Y VF +GLLG FL +E
Sbjct: 399 LNDYSVQFIFYFIFVNLQISFAFLASSIFSKVKTATVVAYTLVFASGLLGMFLFGELLES 458
Query: 486 PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIM 545
P+FP + I A+ELYPGF+L+RGLYEF Y+ RG +GM W DL E+GM ++ +M
Sbjct: 459 PTFPEKGILALELYPGFSLFRGLYEFAQYASRG-----NGMKWKDL--KESGMDKLFYLM 511
Query: 546 FVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSK-VFVSMEK 604
VEW ++L +AY +D + SSG + P F + S + RQ+S+ V + MEK
Sbjct: 512 SVEWFVILIVAYSIDLLSSSG--RSPFVFFKKSSSLPSPSVQ-----RQNSENVLIDMEK 564
Query: 605 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 664
DVTQERE+VE+L E T HAI+ DNL+K+YPG DGNP K+AV GL L +PSGECFGML
Sbjct: 565 TDVTQEREKVEKLRKEGTTGHAIVCDNLKKVYPGSDGNPPKLAVRGLYLDVPSGECFGML 624
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
GPNGAGKT+FI+MM G+ + TSGTA VQGLDI DM+++YTSMGVCPQ DLLW TLTGRE
Sbjct: 625 GPNGAGKTSFINMMTGLLKPTSGTALVQGLDICKDMNKVYTSMGVCPQHDLLWGTLTGRE 684
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
HLLFYGRLKN+KG AL QAVEESLKSV+LF GGVADK AGKYSGGMKRRLSVAISLIGNP
Sbjct: 685 HLLFYGRLKNIKGSALMQAVEESLKSVSLFDGGVADKPAGKYSGGMKRRLSVAISLIGNP 744
Query: 785 KV 786
KV
Sbjct: 745 KV 746
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54DT1|ABCA9_DICDI ABC transporter A family member 9 OS=Dictyostelium discoideum GN=abcA9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 161/510 (31%), Positives = 242/510 (47%), Gaps = 48/510 (9%)
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
V S+N + L LG I + +P +D++S++G F+ + + + P
Sbjct: 194 VAFSMNTMTTTILNYFLGGNGTIYKSNIATLPYYQQSTTIDIASLLGGSFYPFALSFIMP 253
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
+ + ++VYEKQ+KLR + M GL YW ++Y + F I I ++ V S+ G F
Sbjct: 254 LFIYSIVYEKQEKLRDLSLMMGLKIRNYWFMTYIFNFLIYFIIIVFVVGVSSIFGFAVFV 313
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
S F+F + N I +F ++ F + AS+ GY V L + L +D
Sbjct: 314 KGSQFAMFLFLFAWGNSMITFSFFLSTFFKKTRAASIFGYFLVIIAVNLNSILSYQVFKD 373
Query: 486 --PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLI 543
P P WI P A YRG+ + T G D E M +++
Sbjct: 374 STPPVPYYWI------PLLAFYRGMSQLST------QCGIDLCPEWSAYTWEFEMSKIIF 421
Query: 544 IMFVEWLLLLGIAYYVDKILSS--GGAKGPLYFLQN----FKKKSRSSFRKPSLGRQDSK 597
++++ ++ L IA Y+D++L G PL+FL+ FK K + G +
Sbjct: 422 WLYIDAIVYLLIALYLDQVLPREFGVPSHPLFFLKPILNLFKNKDNDKSNTINGGSGGGR 481
Query: 598 VFVS---------------------MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIY 636
F +E DV +E+E + +P II + L K Y
Sbjct: 482 RFSETSSLINSADFDVENNNGEQEIVEDEDVLEEKEMIINRRYDPNEMTVII-EGLTKHY 540
Query: 637 PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696
GR K +V+ L L++ GE G LG NGAGKTT ISM+ G+ TSGTA+V GLDI
Sbjct: 541 VGR----PKPSVDNLYLSVRKGEVLGFLGANGAGKTTTISMLTGLYTPTSGTAHVAGLDI 596
Query: 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 756
R DMD I+ +GV Q D+ WE L+ E LL++ RLK + Q+VE LK VNLF
Sbjct: 597 RYDMDNIHHVIGVAMQFDIFWEDLSCVETLLYFTRLKGVPPEREIQSVESILKEVNLFE- 655
Query: 757 GVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V ++ + SGGMKRRLS A+++ G+ +
Sbjct: 656 -VKERLVKELSGGMKRRLSFAVAMTGDSSI 684
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8T6J0|ABCA7_DICDI ABC transporter A family member 7 OS=Dictyostelium discoideum GN=abcA7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 149/482 (30%), Positives = 233/482 (48%), Gaps = 55/482 (11%)
Query: 333 VKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGP 392
+ +P + D++S++G FF + + + P+ + ++VYEKQ+KLR + M GL
Sbjct: 224 ISTLPYIYKSQQFDIASLLGGSFFPFALSFVLPLFMYSIVYEKQEKLRDLSLMMGLKMRN 283
Query: 393 YWLISYAYFFCISSIYMLCFVVFGSVIGL-------RFFTLNSYGIQFVFYIIYINLQIA 445
YW++++ + F L +VV SVI L F S F+ ++ ++
Sbjct: 284 YWIMTFIFNF-------LTYVVIVSVISLICSAAKVSLFVKGSPFALFLLLFLWGLSMVS 336
Query: 446 LAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALY 505
AF ++ F + AS+ GY V L + L P F W+ P A
Sbjct: 337 FAFFLSTFFKRTRAASIFGYFFVMVMVNLNSTLSLFNTSVPVF-YYWV------PILAFS 389
Query: 506 RGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSS 565
RG+ G +W D E + +L +F++ ++ L +A Y+DK+L
Sbjct: 390 RGISTLCGLCGNGLCPPLSQYTW----DFE--LSRILFWLFIDTIVYLTLAVYLDKVLPR 443
Query: 566 --GGAKGPLYFLQNFKK--KSRSSFRKPSLG---RQDSKVF--------------VSMEK 604
G PL+F+++ K+ + +RK G + +K+ +
Sbjct: 444 EFGVPSHPLFFIKDLKELFSKKGKYRKLRDGDGINEKTKLINEYTIDGINNDDDDDGLMD 503
Query: 605 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 664
DV +ER+ + + P +I LRK +PGR K A++ L L++ GE G L
Sbjct: 504 EDVKKERDMIVKGEYNP-EEMTLIVQGLRKQFPGR----PKPALSNLYLSVKKGEVLGYL 558
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
GPNGAGKTT IS++ G+ TSGTA++ GLDIR DMD+I+ +GV Q D+LWE LT E
Sbjct: 559 GPNGAGKTTSISILTGLYTPTSGTAHIAGLDIRYDMDKIHQVIGVVMQFDVLWEDLTCEE 618
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
+L+Y RLK ++ LK VNL V D+ + SGGMKRRLS AI++ G
Sbjct: 619 TILYYTRLKGTPKSIEFESTHNILKEVNLLD--VKDRFVKELSGGMKRRLSFAIAMTGES 676
Query: 785 KV 786
+
Sbjct: 677 SI 678
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | ||||||
| 225456715 | 949 | PREDICTED: ABC transporter A family memb | 0.97 | 0.817 | 0.706 | 0.0 | |
| 297734006 | 928 | unnamed protein product [Vitis vinifera] | 0.943 | 0.813 | 0.696 | 0.0 | |
| 255540959 | 984 | abc transporter, putative [Ricinus commu | 0.98 | 0.796 | 0.674 | 0.0 | |
| 449440768 | 947 | PREDICTED: ABC transporter A family memb | 0.971 | 0.820 | 0.676 | 0.0 | |
| 356508588 | 949 | PREDICTED: ABC transporter A family memb | 0.973 | 0.820 | 0.696 | 0.0 | |
| 224121524 | 939 | ABC transporter family, cholesterol/phos | 0.958 | 0.816 | 0.652 | 0.0 | |
| 224124050 | 911 | ABC transporter family, cholesterol/phos | 0.927 | 0.814 | 0.635 | 0.0 | |
| 356513540 | 949 | PREDICTED: ABC transporter A family memb | 0.967 | 0.815 | 0.636 | 0.0 | |
| 449469655 | 952 | PREDICTED: ABC transporter A family memb | 0.962 | 0.808 | 0.616 | 0.0 | |
| 449520467 | 952 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.962 | 0.808 | 0.611 | 0.0 |
| >gi|225456715|ref|XP_002274303.1| PREDICTED: ABC transporter A family member 7 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1157 bits (2994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/781 (70%), Positives = 655/781 (83%), Gaps = 5/781 (0%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF TQ NALLRKNLTFQKRN++TNIRL+ FP +LCV++V++Q L++ + +++ KCG
Sbjct: 8 PASFWTQANALLRKNLTFQKRNIRTNIRLVSFPILLCVLLVVIQKLVNSELDKAEN-KCG 66
Query: 69 CNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
C V E++CGI+YST Q CPIP PP+WP +LQVPAPEYRAVR DF+ + D
Sbjct: 67 CISVTNENGQ-TEKRCGIQYSTLDQVGTCPIPSPPEWPALLQVPAPEYRAVRADFIQFTD 125
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
LP++SCR GSCPATIL TGNN+S G TL +MF + S N S+++ +L++ VLGS+S
Sbjct: 126 LPDDSCRRTGSCPATILFTGNNRSLGLTLAGNMFSSSSSLNSSNILGNLSNFVLGSESMP 185
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEI 248
E TN+++PAF SD PIY ++ QC P+S+F V +AS N+ I+C+QGL+LWR SSSEI
Sbjct: 186 ETTNFLDPAFFSDLPIYHVEPQCAPNSTFSVSFSLASTNVQQEIQCVQGLHLWRNSSSEI 245
Query: 249 NDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPR 308
NDEL++G+ KGNS+R+ NEI+AAYDFLNS+ FNV+IWYNSTYKND G I L+RVPR
Sbjct: 246 NDELFKGYHKGNSERKINEIVAAYDFLNSNGNNFNVSIWYNSTYKNDAGASSIALVRVPR 305
Query: 309 SINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVIL 368
S+NLASNAYL+ + G G +++ DF+KEMPK +++++LD+SS++GTLFFTWV+LQLFPV+L
Sbjct: 306 SVNLASNAYLQLVQGDGVKMVLDFIKEMPKPETQVRLDLSSVLGTLFFTWVILQLFPVVL 365
Query: 369 TALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNS 428
T+LVYEKQQ LRIMMKMHGLGDGPYW+ISYAYF ISSIYMLCFV+FGSVIGL+FFTLN
Sbjct: 366 TSLVYEKQQNLRIMMKMHGLGDGPYWMISYAYFLVISSIYMLCFVIFGSVIGLKFFTLND 425
Query: 429 YGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSF 488
Y IQ VFY IYINLQI+LAFL+AA FSNVKTA+V+GYICVFGTGLLG FL Q F++D SF
Sbjct: 426 YSIQLVFYFIYINLQISLAFLLAAAFSNVKTATVLGYICVFGTGLLGGFLFQFFIQDTSF 485
Query: 489 PRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVE 548
P WI MELYPGF+LYRGLYEF YSF G+ MGTDGM W DLSDS NGM++VLIIMFVE
Sbjct: 486 PNGWIIVMELYPGFSLYRGLYEFAQYSFTGNYMGTDGMRWGDLSDSTNGMRDVLIIMFVE 545
Query: 549 WLLLLGIAYYVDKILSSGGA--KGPLYFLQNF-KKKSRSSFRKPSLGRQDSKVFVSMEKP 605
WL++L +AYY+D++LSSG + PL+FLQNF KKK SSFRKPSL RQ SKVFV MEK
Sbjct: 546 WLIVLFVAYYIDQVLSSGNGVKRSPLFFLQNFRKKKPMSSFRKPSLKRQGSKVFVKMEKA 605
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
DV+QERE+VEQLLLE G +HAII DNLRK+YPGRDGNPEK+AV GLSLAL GECFGMLG
Sbjct: 606 DVSQEREKVEQLLLESGANHAIICDNLRKVYPGRDGNPEKIAVKGLSLALSHGECFGMLG 665
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725
PNGAGKT+FISMMIG+T TSGTA+V+GLDIR DMD IYTSMGVCPQ DLLWETLTGREH
Sbjct: 666 PNGAGKTSFISMMIGLTVPTSGTAFVEGLDIRIDMDGIYTSMGVCPQHDLLWETLTGREH 725
Query: 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
LLFYGRLKNLKG ALTQAVEESLKSVNLFHGGV DKQAGKYSGGMKRRLSVAISLIG+PK
Sbjct: 726 LLFYGRLKNLKGAALTQAVEESLKSVNLFHGGVGDKQAGKYSGGMKRRLSVAISLIGDPK 785
Query: 786 V 786
V
Sbjct: 786 V 786
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734006|emb|CBI15253.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/781 (69%), Positives = 644/781 (82%), Gaps = 26/781 (3%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF TQ NALLRKNLTFQKRN++TNIRL+ FP +LCV++V++Q L++ + +++ KCG
Sbjct: 8 PASFWTQANALLRKNLTFQKRNIRTNIRLVSFPILLCVLLVVIQKLVNSELDKAEN-KCG 66
Query: 69 CNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
C V CPIP PP+WP +LQVPAPEYRAVR DF+ + D
Sbjct: 67 CISVGT----------------------CPIPSPPEWPALLQVPAPEYRAVRADFIQFTD 104
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
LP++SCR GSCPATIL TGNN+S G TL +MF + S N S+++ +L++ VLGS+S
Sbjct: 105 LPDDSCRRTGSCPATILFTGNNRSLGLTLAGNMFSSSSSLNSSNILGNLSNFVLGSESMP 164
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEI 248
E TN+++PAF SD PIY ++ QC P+S+F V +AS N+ I+C+QGL+LWR SSSEI
Sbjct: 165 ETTNFLDPAFFSDLPIYHVEPQCAPNSTFSVSFSLASTNVQQEIQCVQGLHLWRNSSSEI 224
Query: 249 NDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPR 308
NDEL++G+ KGNS+R+ NEI+AAYDFLNS+ FNV+IWYNSTYKND G I L+RVPR
Sbjct: 225 NDELFKGYHKGNSERKINEIVAAYDFLNSNGNNFNVSIWYNSTYKNDAGASSIALVRVPR 284
Query: 309 SINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVIL 368
S+NLASNAYL+ + G G +++ DF+KEMPK +++++LD+SS++GTLFFTWV+LQLFPV+L
Sbjct: 285 SVNLASNAYLQLVQGDGVKMVLDFIKEMPKPETQVRLDLSSVLGTLFFTWVILQLFPVVL 344
Query: 369 TALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNS 428
T+LVYEKQQ LRIMMKMHGLGDGPYW+ISYAYF ISSIYMLCFV+FGSVIGL+FFTLN
Sbjct: 345 TSLVYEKQQNLRIMMKMHGLGDGPYWMISYAYFLVISSIYMLCFVIFGSVIGLKFFTLND 404
Query: 429 YGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSF 488
Y IQ VFY IYINLQI+LAFL+AA FSNVKTA+V+GYICVFGTGLLG FL Q F++D SF
Sbjct: 405 YSIQLVFYFIYINLQISLAFLLAAAFSNVKTATVLGYICVFGTGLLGGFLFQFFIQDTSF 464
Query: 489 PRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVE 548
P WI MELYPGF+LYRGLYEF YSF G+ MGTDGM W DLSDS NGM++VLIIMFVE
Sbjct: 465 PNGWIIVMELYPGFSLYRGLYEFAQYSFTGNYMGTDGMRWGDLSDSTNGMRDVLIIMFVE 524
Query: 549 WLLLLGIAYYVDKILSSGGA--KGPLYFLQNF-KKKSRSSFRKPSLGRQDSKVFVSMEKP 605
WL++L +AYY+D++LSSG + PL+FLQNF KKK SSFRKPSL RQ SKVFV MEK
Sbjct: 525 WLIVLFVAYYIDQVLSSGNGVKRSPLFFLQNFRKKKPMSSFRKPSLKRQGSKVFVKMEKA 584
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
DV+QERE+VEQLLLE G +HAII DNLRK+YPGRDGNPEK+AV GLSLAL GECFGMLG
Sbjct: 585 DVSQEREKVEQLLLESGANHAIICDNLRKVYPGRDGNPEKIAVKGLSLALSHGECFGMLG 644
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725
PNGAGKT+FISMMIG+T TSGTA+V+GLDIR DMD IYTSMGVCPQ DLLWETLTGREH
Sbjct: 645 PNGAGKTSFISMMIGLTVPTSGTAFVEGLDIRIDMDGIYTSMGVCPQHDLLWETLTGREH 704
Query: 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
LLFYGRLKNLKG ALTQAVEESLKSVNLFHGGV DKQAGKYSGGMKRRLSVAISLIG+PK
Sbjct: 705 LLFYGRLKNLKGAALTQAVEESLKSVNLFHGGVGDKQAGKYSGGMKRRLSVAISLIGDPK 764
Query: 786 V 786
V
Sbjct: 765 V 765
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540959|ref|XP_002511544.1| abc transporter, putative [Ricinus communis] gi|223550659|gb|EEF52146.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/786 (67%), Positives = 646/786 (82%), Gaps = 2/786 (0%)
Query: 1 MSSSLAPEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVS 60
M + + PA+F Q +ALLRKNLTFQKRNVKTN RLI FPF+LCV++V+ Q LLDR +
Sbjct: 38 MEDTSSHGPATFWNQADALLRKNLTFQKRNVKTNCRLIFFPFVLCVLLVITQNLLDREL- 96
Query: 61 NSDDYKCGCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVR 120
N KCGC + G +E+ CG++YST Q C IP PPQWPP+LQVPAP YRAV
Sbjct: 97 NKPSRKCGCVDIDTDGDGRLEKVCGLQYSTLDQVATCAIPSPPQWPPLLQVPAPHYRAVS 156
Query: 121 NDFLTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADN 180
+D + + DLPN+SCR GSCP T+L+TGNNQS G++L +MF F+ N S+V+ +A++
Sbjct: 157 SDVIPFTDLPNDSCRSTGSCPVTVLVTGNNQSLGESLAGNMFPSAFTLNSSNVVDIVANS 216
Query: 181 VLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNL 240
VLGSD++ E N+++PAF+ SP+Y++Q QC +S+F V V+ + I + C+QGLNL
Sbjct: 217 VLGSDTEPERDNFLDPAFLEASPLYSVQRQCTSNSTFSVSVQ-SVIEFQKEVACVQGLNL 275
Query: 241 WRKSSSEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVP 300
WR SSSE+N+ELY+G+R+GN + + NEIL+AYDFLNS+ FNV+IWYNSTY++
Sbjct: 276 WRNSSSEVNEELYKGYRRGNLEGKINEILSAYDFLNSNRNNFNVSIWYNSTYRDGEIQGQ 335
Query: 301 IGLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVV 360
+RVPR++NL SNA+L+ GPGT++L +FVKEMPK SK+ +D++S++GTLFF+WV+
Sbjct: 336 FNFVRVPRAVNLVSNAFLQFFQGPGTKMLLEFVKEMPKAASKINVDLASLLGTLFFSWVI 395
Query: 361 LQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIG 420
LQLFPV+LT+LVYEKQQKLRIMMKMHGLGDGPYW+ISYAYF IS +Y+L FV+FGSVIG
Sbjct: 396 LQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLSISLLYVLVFVIFGSVIG 455
Query: 421 LRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQ 480
L+FF LN Y IQFVFY IYINLQI AFLVAALFSNVKTA+V+ YICVFGTGLLG FL Q
Sbjct: 456 LKFFRLNDYSIQFVFYFIYINLQITFAFLVAALFSNVKTATVVAYICVFGTGLLGGFLFQ 515
Query: 481 SFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKE 540
+F+ED SFPR WI +ELYPGF LYRGLYEF Y+F G++MGTDGM W DLSD +NGMK+
Sbjct: 516 NFLEDSSFPRGWIIVLELYPGFTLYRGLYEFSEYAFTGNAMGTDGMRWGDLSDGKNGMKD 575
Query: 541 VLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFV 600
VLIIM +EWL+ L +A+Y+D++ SSG +K PL+FLQNF+KK SFR+PSL RQ SKVFV
Sbjct: 576 VLIIMTIEWLVGLFVAFYIDQVSSSGSSKSPLFFLQNFRKKRPISFRRPSLRRQGSKVFV 635
Query: 601 SMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC 660
M+KPDVTQERE+VEQLLLEP T+HAI+ DNL+K+YPGRDGNPEK+AV GLSLALP GEC
Sbjct: 636 DMDKPDVTQEREKVEQLLLEPNTTHAIVCDNLKKVYPGRDGNPEKLAVRGLSLALPPGEC 695
Query: 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720
FGMLGPNGAGKT+FISMMIG+T+ TSG AYVQGLDI+T MD IYTSMGVCPQ DLLWETL
Sbjct: 696 FGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIQTRMDWIYTSMGVCPQHDLLWETL 755
Query: 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780
TGREHLLFYGRLKNL+GPALTQAVEESL+SVNLF+ GVADKQAGKYSGGMKRRLSVAISL
Sbjct: 756 TGREHLLFYGRLKNLRGPALTQAVEESLRSVNLFNSGVADKQAGKYSGGMKRRLSVAISL 815
Query: 781 IGNPKV 786
IG+PKV
Sbjct: 816 IGDPKV 821
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440768|ref|XP_004138156.1| PREDICTED: ABC transporter A family member 7-like [Cucumis sativus] gi|449477292|ref|XP_004154983.1| PREDICTED: ABC transporter A family member 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/778 (67%), Positives = 643/778 (82%), Gaps = 1/778 (0%)
Query: 9 PASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCG 68
PASF TQ NALLRKNLT+QKRN+ N+RLILFPF+LC+++VL+Q L+D + + ++CG
Sbjct: 8 PASFWTQANALLRKNLTYQKRNMNANVRLILFPFLLCLLLVLIQSLVDNEL-DKPKFRCG 66
Query: 69 CNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
C C+ +G EE CG+++ST QA CPI PP+WPP+LQ+PAPE+RAVRN+F + D
Sbjct: 67 CACIDTNGDGRCEEVCGVQFSTLDQASSCPIENPPEWPPLLQMPAPEFRAVRNNFNPFND 126
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
LP+ESCR G+CPAT+L TG N++ G+TL +F ++F+ N ++V +A N +GS S T
Sbjct: 127 LPDESCRQTGTCPATVLFTGTNRTLGETLAGSLFTNSFNLNSNNVSDGIAFNAVGSSSMT 186
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEI 248
E N++EPAF S+ P+Y +Q QC +SS VP V S+ + IRC+QGL+LWR ++SE+
Sbjct: 187 ENNNFLEPAFASNLPLYNVQLQCTRNSSLTVPFPVLSVEKAQEIRCVQGLHLWRNTASEV 246
Query: 249 NDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPR 308
NDELY+GF KGNS+ + NEILA ++FLNS+ FNV +WYNS++KND+G+ P LLR+PR
Sbjct: 247 NDELYKGFHKGNSEGKVNEILAGFNFLNSNANNFNVTVWYNSSFKNDSGSRPPALLRIPR 306
Query: 309 SINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVIL 368
S+NLA+NAYL+ L GP T+I F+FVKEMPK SKL+LD+SS++GTLFFTWVVLQLFPV+L
Sbjct: 307 SVNLATNAYLKLLQGPSTEIPFEFVKEMPKAASKLRLDLSSLLGTLFFTWVVLQLFPVVL 366
Query: 369 TALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNS 428
+LVYEKQQKLRIMMKMHGLGDGPYWLISYAYF IS+IY+LCFV+FGSVIGL+FF LN
Sbjct: 367 QSLVYEKQQKLRIMMKMHGLGDGPYWLISYAYFLTISAIYILCFVIFGSVIGLKFFRLND 426
Query: 429 YGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSF 488
Y IQFVFY +YINLQI+LAFL AA FSNVKTA+VI YI VFGTGLLG FL Q F+EDPSF
Sbjct: 427 YSIQFVFYFLYINLQISLAFLTAAWFSNVKTAAVIAYILVFGTGLLGGFLFQFFLEDPSF 486
Query: 489 PRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVE 548
P WI +EL+PGFALYRGLYEF YSF G+ MGTDGM W +LSD NGM++V IIM VE
Sbjct: 487 PNAWIIVLELFPGFALYRGLYEFAQYSFTGNFMGTDGMRWGNLSDKSNGMRDVFIIMVVE 546
Query: 549 WLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVT 608
WLL++ +AYY+D+I SSGG K PL+FL+ F+KK+ +SFR PSL +Q SKVFV ME+ DV
Sbjct: 547 WLLVILVAYYLDQISSSGGGKSPLFFLRRFRKKAAASFRLPSLRKQGSKVFVQMEQSDVI 606
Query: 609 QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNG 668
QERE+VEQLLL+P SHAI+ DNL+K+YPGRDGNPEK AV GLSLA+P GECFGMLGPNG
Sbjct: 607 QEREKVEQLLLDPDASHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNG 666
Query: 669 AGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728
AGKT+FISMMIG+T+ ++G AYVQG+DIR DMDRIYTSMGVCPQ DLLWE LTGREHLLF
Sbjct: 667 AGKTSFISMMIGLTKPSAGAAYVQGMDIRRDMDRIYTSMGVCPQHDLLWEQLTGREHLLF 726
Query: 729 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
YGRLK L+G ALT+AVEESLK VNL+HGG+ADKQAGKYSGGMKRRLSVAISLIG+PKV
Sbjct: 727 YGRLKKLRGSALTEAVEESLKGVNLYHGGIADKQAGKYSGGMKRRLSVAISLIGDPKV 784
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508588|ref|XP_003523037.1| PREDICTED: ABC transporter A family member 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/782 (69%), Positives = 648/782 (82%), Gaps = 3/782 (0%)
Query: 6 APEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDY 65
A EPASF TQ NALLRKNLTFQKRNVKTN+ LIL PFILC+++VLLQ LL+ + +++
Sbjct: 7 ANEPASFWTQANALLRKNLTFQKRNVKTNVGLILSPFILCLLLVLLQRLLEYQLDKAEN- 65
Query: 66 KCGCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
KCGC CVR+ G C+EE+CGIE+S Q CPIP PP+WPP+LQVPAP+YRAVR D+
Sbjct: 66 KCGCVCVRRQGDTCLEEECGIEHSDLDQFATCPIPSPPEWPPLLQVPAPQYRAVRTDYFP 125
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSE-NPSDVMASLADNVLGS 184
+ D PN SCR +GSCP T+L TG NQSFG+ ++++M T S SD+MASLA NV+GS
Sbjct: 126 FSDFPNTSCRKNGSCPVTMLFTGTNQSFGEIISRNMIPSTLSTIYSSDIMASLASNVVGS 185
Query: 185 DSKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKS 244
+S+ TN++EPAF SD PIY +Q+QC +S+F V V+++ I+ + C QGL LWR S
Sbjct: 186 ESEPGNTNFLEPAFFSDLPIYYLQNQCTQNSTFSVSVQMSGISKQQEVICAQGLRLWRNS 245
Query: 245 SSEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLL 304
SSE+N+ELY+G+ + N +R+ NEI A YDFLNS+ FNV+IWYNSTYK DTG PI L
Sbjct: 246 SSEVNNELYKGYWRSNIERQINEIAAGYDFLNSNGSIFNVSIWYNSTYKKDTGFNPIALA 305
Query: 305 RVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLF 364
R+PRS+NL SNAYL+ LLGPGT++ F+FVKEMPK ++ +KLD++S++G +FFTWV+LQLF
Sbjct: 306 RIPRSVNLVSNAYLQFLLGPGTKMFFEFVKEMPKPETPIKLDLASLLGGVFFTWVILQLF 365
Query: 365 PVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFF 424
P+ LT+LVYEKQQKLRIMMKMHGL DGPYW+ISY YF IS +YMLCFV+FGSVIGL FF
Sbjct: 366 PIPLTSLVYEKQQKLRIMMKMHGLDDGPYWMISYGYFLAISIVYMLCFVIFGSVIGLNFF 425
Query: 425 TLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVE 484
T+N Y IQ VFY IYINLQI+LAFL+A+LFSNVKTA+V+ YI +FGTGLL F FV+
Sbjct: 426 TMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVLAYIGMFGTGLLADFPFHFFVQ 485
Query: 485 DPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLII 544
D SFPR WI MELYPGFALYRGLYEF Y+F G ++GTDGM W+DLSDS NGMKEVLII
Sbjct: 486 DTSFPRGWIIVMELYPGFALYRGLYEFSQYAFSGDALGTDGMRWSDLSDSTNGMKEVLII 545
Query: 545 MFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEK 604
MFVEWLL+L AYY+D++LSSG K PL FL+ F+KK SSFRKPS+ RQ SKVFV +EK
Sbjct: 546 MFVEWLLVLLFAYYIDQVLSSGCRKSPL-FLKRFQKKPHSSFRKPSIQRQKSKVFVQIEK 604
Query: 605 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 664
PDVTQERE+VE+LLLE + AI+ DN+RK+YPGRDGNPEK+AV GLSLALP GECFGML
Sbjct: 605 PDVTQEREKVEELLLESTINQAIVCDNMRKVYPGRDGNPEKLAVRGLSLALPQGECFGML 664
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
GPNGAGKT+FI+MMIG+T+ TSGTAYVQGLD+RT MD IYTSMGVCPQ DLLWE+LTGRE
Sbjct: 665 GPNGAGKTSFINMMIGLTKPTSGTAYVQGLDLRTHMDGIYTSMGVCPQHDLLWESLTGRE 724
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
HLLFYGRLKNLKG ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG+P
Sbjct: 725 HLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDP 784
Query: 785 KV 786
KV
Sbjct: 785 KV 786
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121524|ref|XP_002318606.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222859279|gb|EEE96826.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/786 (65%), Positives = 630/786 (80%), Gaps = 19/786 (2%)
Query: 10 ASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYKCGC 69
A+F Q +ALLRKNLT+QKRN+ N RLI FPF+LC+++++ Q L+D +S D CGC
Sbjct: 1 AAFWIQADALLRKNLTYQKRNISANCRLISFPFVLCILLIITQTLVDNQISK-DSNVCGC 59
Query: 70 NCVRKSGS-DCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPD 128
C+ +G C + CG++YS QA C +P PP+WPP+LQVP P+YRAVR+ + D
Sbjct: 60 QCIDNNGDGTCDQRVCGLQYSDVDQAPSCSVPSPPKWPPLLQVPGPQYRAVRSASDSLSD 119
Query: 129 LPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKT 188
P+ESCR +G+CP ++L+TG N++ GQ+L MF PS + ++ ++VLGS+S+
Sbjct: 120 FPDESCRQNGTCPVSLLITGTNKTLGQSLADMMFA-----APSILNST--NSVLGSNSEP 172
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKV-ASINISLVIRCLQGLNLWRKSSSE 247
+ N+++PAF S +Y IQSQC P+S F V V + + V C+Q ++LWR SSSE
Sbjct: 173 QQDNFLDPAFAEGS-LYNIQSQCTPNSIFNVSVPLLQAAPFQNVTTCVQSISLWRNSSSE 231
Query: 248 INDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVP 307
IND++YRG+ KGN++R NEIL AYDFLNSD FNVN+WYN+TYK D+ + L+R+P
Sbjct: 232 INDQIYRGYEKGNAERTYNEILGAYDFLNSDANNFNVNVWYNATYK-DSSDGETYLVRLP 290
Query: 308 RSINLA-------SNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVV 360
R++NL SNAYL+S G G +++ DFVKEMPKT +KLKLD++S++GTLFFTWVV
Sbjct: 291 RAVNLVLSLSSQVSNAYLQSFRGSGVKMILDFVKEMPKTSTKLKLDIASLLGTLFFTWVV 350
Query: 361 LQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIG 420
+QLFPV+LTALVYEKQQKLRIMMKMHGLGDGPYW+ISY YF IS++YM FV FGS++G
Sbjct: 351 IQLFPVVLTALVYEKQQKLRIMMKMHGLGDGPYWMISYMYFLAISALYMFVFVAFGSIVG 410
Query: 421 LRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQ 480
L+FFTLN Y IQF+FY +YINLQI+LAFLV+A FSNVKTA+V+GYICVFGTGLLG FL Q
Sbjct: 411 LKFFTLNDYFIQFLFYFLYINLQISLAFLVSAFFSNVKTATVVGYICVFGTGLLGGFLFQ 470
Query: 481 SFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKE 540
SFVED SFP+ WI MELYPGFALYRGLYEF YS +G+SMGTDGM W +LSDSENGM +
Sbjct: 471 SFVEDTSFPKGWIIFMELYPGFALYRGLYEFAEYSLQGNSMGTDGMKWGNLSDSENGMSD 530
Query: 541 VLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFV 600
V+IIM +EWL +L IAYYVD+I +SG K P Y LQ F+KK SSF+KPSLGRQ SKVFV
Sbjct: 531 VMIIMLLEWLAVLCIAYYVDQIFASGSGKNPKYLLQKFRKKRPSSFQKPSLGRQASKVFV 590
Query: 601 SMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC 660
M+KPDV QERE+VEQ+LLEP T+H+I+ DNLRK+YPGRDGNPEK+AV GLSLA+P GEC
Sbjct: 591 DMDKPDVIQEREKVEQILLEPTTTHSIVCDNLRKVYPGRDGNPEKLAVRGLSLAIPRGEC 650
Query: 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720
FGMLGPNGAGKT+FISMMIG+T ++GTAYV+GLDIRT MD +YTSMGVCPQ DLLWETL
Sbjct: 651 FGMLGPNGAGKTSFISMMIGLTTPSTGTAYVEGLDIRTQMDWVYTSMGVCPQHDLLWETL 710
Query: 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780
TGREHLLFYGRLKNLKG AL +AVE+SLKSVNLF+GGVADKQAGKYSGGMKRRLSVAISL
Sbjct: 711 TGREHLLFYGRLKNLKGAALKKAVEDSLKSVNLFNGGVADKQAGKYSGGMKRRLSVAISL 770
Query: 781 IGNPKV 786
IG+PKV
Sbjct: 771 IGDPKV 776
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124050|ref|XP_002330092.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222871226|gb|EEF08357.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/781 (63%), Positives = 617/781 (79%), Gaps = 39/781 (4%)
Query: 6 APEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDY 65
+P A+F TQ +ALLRKNLT+QKRN+ N RLI FPF+LC+++V+ Q L+D + N
Sbjct: 7 SPHTAAFWTQADALLRKNLTYQKRNISANCRLISFPFVLCILLVITQTLVDNQL-NKKSS 65
Query: 66 KCGCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
KCGC + +S + CP+P P +WPP+LQVPAP+YRAVR+
Sbjct: 66 KCGCQYLDQSPN-------------------CPVPSPLKWPPLLQVPAPQYRAVRSASDP 106
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSD 185
+ DLP+ESCR G+CP T+ +TG NQ+ GQ+L MF PS + ++ ++VLGSD
Sbjct: 107 FTDLPDESCRQTGNCPVTVFITGTNQTLGQSLAASMFSP-----PSPLNST--NSVLGSD 159
Query: 186 SKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSS 245
S+T ++++PAF DS +Y IQSQC +S+ A++++SL C+ L+LWR S+
Sbjct: 160 SETRQDSFLDPAFFEDS-LYNIQSQCTSNST-------ANVSVSLTTVCVPSLSLWRNST 211
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLR 305
SEIND+++RG++KGN++R+ NEIL AYDFLNS+ FNV++WYN+T + DT + L+R
Sbjct: 212 SEINDQIFRGYKKGNAERQYNEILGAYDFLNSNANTFNVSVWYNATNR-DTVDGQYYLVR 270
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
+PR++NL SNAYL+ G ++ +F+KEMPK +K KLD++S++GTLFFTWVV+QLFP
Sbjct: 271 LPRAVNLVSNAYLQLFQG---RMELEFIKEMPKPATKQKLDIASLLGTLFFTWVVIQLFP 327
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
V+LTALVYEKQ+KLRIMMKMHGLGDGPYW+ISY YF IS++YM FV FGS++GL+FFT
Sbjct: 328 VVLTALVYEKQEKLRIMMKMHGLGDGPYWMISYMYFLVISALYMFVFVAFGSLVGLKFFT 387
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
LN Y IQFVFY +YINLQI+LAFL +A FSNVKTA+V+GYICVFGTGLLG FL Q+FVED
Sbjct: 388 LNDYSIQFVFYFLYINLQISLAFLASAFFSNVKTATVVGYICVFGTGLLGGFLFQNFVED 447
Query: 486 PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIM 545
SFP+ W+ MELYPGFALYRGLYEF YS G SMGTDGM W +LS SENGM++V+IIM
Sbjct: 448 TSFPKGWVIFMELYPGFALYRGLYEFAEYSSSGTSMGTDGMKWGNLSASENGMRDVMIIM 507
Query: 546 FVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKP 605
+EWL LL +AYYVD++ SSG K P Y LQ F+KK SSFRKPS+GRQ SKVFV M+KP
Sbjct: 508 LLEWLALLFVAYYVDQVFSSGSGKNPKYLLQKFRKKRPSSFRKPSMGRQGSKVFVDMDKP 567
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
DV QERE+VEQLLLEP TSH+I+ DNLRK+YPGRDGN EK+AV GLSLA+P GECFGMLG
Sbjct: 568 DVIQEREKVEQLLLEPTTSHSIVCDNLRKVYPGRDGNAEKLAVRGLSLAIPRGECFGMLG 627
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725
PNGAGKT+FISMMIG+T T+GTAYV+GLDIRT+MD +YTSMGVCPQ DLLWETLTGREH
Sbjct: 628 PNGAGKTSFISMMIGLTTPTTGTAYVEGLDIRTEMDWVYTSMGVCPQHDLLWETLTGREH 687
Query: 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
LLFYGRLKNL+G AL +AVEESL+SVNLF+GGVADK+AGKYSGGMKRRLSVAISLIG+PK
Sbjct: 688 LLFYGRLKNLRGAALKRAVEESLRSVNLFNGGVADKKAGKYSGGMKRRLSVAISLIGDPK 747
Query: 786 V 786
V
Sbjct: 748 V 748
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513540|ref|XP_003525471.1| PREDICTED: ABC transporter A family member 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/789 (63%), Positives = 607/789 (76%), Gaps = 15/789 (1%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDDYK 66
P PASF TQ NALLRKNLTFQKRNVKTN++L+LFP LC+++ LQ +D + S +K
Sbjct: 4 PAPASFWTQANALLRKNLTFQKRNVKTNVQLVLFPVFLCLLLFALQRFIDTQIGGSA-FK 62
Query: 67 CGCNCVR---KSGSDCVEEK--CGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRN 121
CGC C + S C + + CG++YS QA FC IP P +WPP+LQ+PAP RAVR
Sbjct: 63 CGCVCANNTTREHSHCPDSQKVCGVQYSDSLQAAFCAIPNPIEWPPLLQLPAPSSRAVRT 122
Query: 122 DFLTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENP--SDVMASLAD 179
L DLP+ SCR SCP T+L T N SF + + +MF S + SD +ASLA
Sbjct: 123 PSLPLSDLPDASCRRTDSCPLTLLFTAQNHSFAKNVAANMFGSALSVSDFGSDFLASLAM 182
Query: 180 NVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCR--PDSSFVVPVKVASINISLVIRCLQG 237
NVLGS+S N++E AF S PIY +Q +C S P A+ N I+C Q
Sbjct: 183 NVLGSESPPWGNNFIEIAFSSGDPIYYLQKKCTDTEKSGLSFPSLPAADN---EIKCAQA 239
Query: 238 LNLWRKSSSEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTG 297
LNLWR SSSEIN ELY+G++ GN+ + NEI++A+DFLNS+ ++NV+IWYNSTYK TG
Sbjct: 240 LNLWRNSSSEINGELYKGYQTGNTDGQVNEIVSAFDFLNSNRNRYNVSIWYNSTYKQGTG 299
Query: 298 NVPIGLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFT 357
LLR+PRSINL SN+YL+ LLGPGT++LF+FVKEMPK ++ +L++SS++GT+FFT
Sbjct: 300 FSSNVLLRIPRSINLLSNSYLQFLLGPGTKMLFEFVKEMPKPETSFRLEISSLLGTMFFT 359
Query: 358 WVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGS 417
WV+LQLFPV+LT+LVYEKQQKLRIMMKMHGLGDGPYW+ISY YF IS IYMLCFV+FGS
Sbjct: 360 WVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISIIYMLCFVIFGS 419
Query: 418 VIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAF 477
++GL+ FT+N Y IQFVFY IYINLQIALAFLVA++FSNVKTA+V YI VFGTGLL F
Sbjct: 420 LLGLKIFTINDYSIQFVFYFIYINLQIALAFLVASIFSNVKTATVTAYIGVFGTGLLAGF 479
Query: 478 LLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENG 537
L Q FV++ SFPR WI MELYPGFALYRGLYE +SF G S T GM W +LS+S NG
Sbjct: 480 LFQFFVQNTSFPRGWIIVMELYPGFALYRGLYELAQFSFEGSSSETGGMKWQNLSESTNG 539
Query: 538 MKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSK 597
MKEVLIIMFVEW+++L A+YVD++LSSG KGPL+FL+ F+K R F+K SK
Sbjct: 540 MKEVLIIMFVEWIMMLFAAFYVDQVLSSGSRKGPLFFLKGFQK--RPPFQKLDAQMPVSK 597
Query: 598 VFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPS 657
VF MEKPDV QE+E+VEQLLLEP +HAI+ D+L+K+YPGRDGNP+K AV GL L++P
Sbjct: 598 VFSQMEKPDVIQEKEKVEQLLLEPTINHAIVCDDLKKVYPGRDGNPDKYAVRGLFLSVPQ 657
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 717
GECFGMLGPNGAGKT+FI+MMIG+T+ TSG A+VQGLDIRT MD IYT+MGVCPQ DLLW
Sbjct: 658 GECFGMLGPNGAGKTSFINMMIGLTKPTSGMAFVQGLDIRTQMDGIYTTMGVCPQHDLLW 717
Query: 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
E+LTGREHL FYGRLKNLKG LTQ VEESL+S+NLFHGGVADKQ GKYSGGMKRRLSVA
Sbjct: 718 ESLTGREHLFFYGRLKNLKGSVLTQEVEESLESLNLFHGGVADKQVGKYSGGMKRRLSVA 777
Query: 778 ISLIGNPKV 786
ISLIG+P+V
Sbjct: 778 ISLIGDPRV 786
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469655|ref|XP_004152534.1| PREDICTED: ABC transporter A family member 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/780 (61%), Positives = 590/780 (75%), Gaps = 10/780 (1%)
Query: 10 ASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDD--YKC 67
+F TQ N LLRKNLTFQKRN++TN RLILFPFILC ++ ++Q ++DR + DD +C
Sbjct: 17 TTFWTQANGLLRKNLTFQKRNLRTNSRLILFPFILCSLLGVIQTIVDRTL---DDPFIRC 73
Query: 68 GCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYP 127
GC CV +G E+ CG+EYS+ QA CPIP PPQW P+LQ+PAP++RAVR DF Y
Sbjct: 74 GCACVDTNGDGKCEKVCGVEYSSSLQASSCPIPSPPQWAPILQMPAPDFRAVRTDFSPYT 133
Query: 128 DLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSK 187
DLPNESCR SCP T+L TG N+S G L +M + N SD + +++ NV+GS++K
Sbjct: 134 DLPNESCRESMSCPVTMLFTGKNRSLGNILAGNMVPSSLFWNSSDALNAVSLNVMGSETK 193
Query: 188 TEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLV-IRCLQGLNLWRKSSS 246
NY++ AF S+ P+Y +Q QC S+ +P+ + S+ I C+QGL LWR S+S
Sbjct: 194 PGTENYIDFAFFSNLPLYYVQRQCATGSTLSIPLSLYSLESKQKGIACVQGLQLWRNSAS 253
Query: 247 EINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRV 306
++NDE+Y+G+ GN K + NEIL+ +DFLNSD FNV IWYNS+Y +G LLRV
Sbjct: 254 QVNDEIYKGYVNGNPKGKINEILSGFDFLNSDRNNFNVTIWYNSSYNGGSGLSV--LLRV 311
Query: 307 PRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPV 366
PRS+NLASN YL+ LG ++ F FVKEMPK ++K+K D SS +G LFFTWV+LQ FPV
Sbjct: 312 PRSVNLASNGYLKFKLGARIEMPFQFVKEMPKHETKMKSDFSSQLGALFFTWVILQPFPV 371
Query: 367 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL 426
ILT+LV EKQQKLRIMMKMHGLGDGPYW ISYAYF I S+YM FV+FGSV+GL+FFT+
Sbjct: 372 ILTSLVTEKQQKLRIMMKMHGLGDGPYWAISYAYFLAIYSLYMFFFVLFGSVVGLKFFTM 431
Query: 427 NSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDP 486
N Y IQ VFY+++INLQ+++AFL+A+ FS+VKTA V YICVFGTGLLG FL Q F+EDP
Sbjct: 432 NDYSIQLVFYLLFINLQVSIAFLMASTFSDVKTAEVSAYICVFGTGLLGGFLFQFFLEDP 491
Query: 487 SFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMF 546
SFP WI MELYPGF LYRGLYEF YS G+ +GT GM W D DS NGM+EV +IMF
Sbjct: 492 SFPHGWIILMELYPGFLLYRGLYEFAFYSTSGNQVGTSGMRWGDFIDSTNGMREVFVIMF 551
Query: 547 VEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPD 606
EW+++L + YY+D+ +SSG K PL+FLQ KK P RQ SKV V ++KPD
Sbjct: 552 FEWIVVLLVGYYIDQAISSGSWKHPLFFLQRHDKKPAPQNLVPE--RQGSKVVVQIDKPD 609
Query: 607 VTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 666
V ERE+VEQL+ + SH II D+++K+YPGRDGNPEK AV GLSLA+ GECFGMLGP
Sbjct: 610 VRAEREKVEQLIKDRHPSHGIICDHIKKVYPGRDGNPEKFAVKGLSLAIDRGECFGMLGP 669
Query: 667 NGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726
NGAGKT+FISMMIG+T+ T+GTA+V+GLDIRT+M+ +Y SMGVCPQ DLLWETLTGREHL
Sbjct: 670 NGAGKTSFISMMIGLTKPTAGTAFVEGLDIRTEMNGVYASMGVCPQHDLLWETLTGREHL 729
Query: 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
LFYGRLKNL+G AL QAVEESLK VNLF GGVADKQAG YSGGMKRRLSVAISLIG PKV
Sbjct: 730 LFYGRLKNLEGSALVQAVEESLKDVNLFKGGVADKQAGMYSGGMKRRLSVAISLIGYPKV 789
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520467|ref|XP_004167255.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter A family member 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/780 (61%), Positives = 590/780 (75%), Gaps = 10/780 (1%)
Query: 10 ASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFILCVIIVLLQVLLDRVVSNSDD--YKC 67
+F TQ N LLRKNLTFQKRN++TN RLILFPFILC ++ ++Q ++DR + DD +C
Sbjct: 17 TTFWTQANGLLRKNLTFQKRNLRTNSRLILFPFILCSLLGVIQTIVDRTL---DDPFIRC 73
Query: 68 GCNCVRKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYP 127
GC CV +G E+ CG+EYS+ QA CPIP PPQW P+LQ+PAP++RAVR DF Y
Sbjct: 74 GCACVDTNGDGKCEKVCGVEYSSSLQASSCPIPSPPQWAPILQMPAPDFRAVRTDFSPYT 133
Query: 128 DLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSK 187
DLPNESCR SCP T+L TG N+S G L +M + N SD + +++ NV+GS++K
Sbjct: 134 DLPNESCRESMSCPVTMLFTGKNRSLGNILAGNMVPSSLFWNSSDALNAVSLNVMGSETK 193
Query: 188 TEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLV-IRCLQGLNLWRKSSS 246
NY++ AF S+ P+Y +Q QC S+ +P+ + S+ I C+QGL LWR S+S
Sbjct: 194 PGTENYIDFAFFSNLPLYYVQRQCATGSTLSIPLSLYSLESKQKGIACVQGLQLWRNSAS 253
Query: 247 EINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRV 306
++NDE+Y+G+ GN K + NEIL+ +DFLNSD FNV IWYNS+Y +G LLRV
Sbjct: 254 QVNDEIYKGYVNGNPKGKINEILSGFDFLNSDRNNFNVTIWYNSSYNGGSGLSV--LLRV 311
Query: 307 PRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPV 366
PRS+NLASN YL+ LG ++ F FVKEMPK ++K+K D SS +G LFFTWV+LQ FPV
Sbjct: 312 PRSVNLASNGYLKFKLGARIEMPFQFVKEMPKHETKMKSDFSSQLGALFFTWVILQPFPV 371
Query: 367 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL 426
ILT+LV EKQQKLRIMMKMHGLGDGPYW ISYAYF I S+YM FV+FGSV+GL+FFT+
Sbjct: 372 ILTSLVTEKQQKLRIMMKMHGLGDGPYWAISYAYFLAIYSLYMFFFVLFGSVVGLKFFTM 431
Query: 427 NSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDP 486
N Y IQ VFY+++INLQ+++AFL+A+ FS+VKTA V YICVFGTGLLG FL Q F+EDP
Sbjct: 432 NDYSIQLVFYLLFINLQVSIAFLMASTFSDVKTAEVSAYICVFGTGLLGGFLFQFFLEDP 491
Query: 487 SFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMF 546
SFP WI MELYPGF LYRGLYEF YS G+ +GT GM W D DS NGM+EV +IMF
Sbjct: 492 SFPHGWIILMELYPGFLLYRGLYEFAFYSTSGNQVGTSGMRWGDFIDSTNGMREVFVIMF 551
Query: 547 VEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPD 606
EW+++L + YY+D+ +SSG K PL+ ++ ++K P RQ SKV V ++KPD
Sbjct: 552 FEWIVVLLVGYYIDQAISSGSWKHPLFSFKDXRQKPAPQNLVPE--RQGSKVVVQIDKPD 609
Query: 607 VTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 666
V ERE+VEQL+ + SH II D+++K+YPGRDGNPEK AV GLSLA+ GECFGMLGP
Sbjct: 610 VRAEREKVEQLIKDRHPSHGIICDHIKKVYPGRDGNPEKFAVKGLSLAIDRGECFGMLGP 669
Query: 667 NGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726
NGAGKT+FISMMIG+T+ T+GTA+V+GLDIRT+M+ +Y SMGVCPQ DLLWETLTGREHL
Sbjct: 670 NGAGKTSFISMMIGLTKPTAGTAFVEGLDIRTEMNGVYASMGVCPQHDLLWETLTGREHL 729
Query: 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
LFYGRLKNL+G AL QAVEESLK VNLF GGVADKQAG YSGGMKRRLSVAISLIG PKV
Sbjct: 730 LFYGRLKNLEGSALVQAVEESLKDVNLFKGGVADKQAGMYSGGMKRRLSVAISLIGYPKV 789
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | ||||||
| TAIR|locus:2100322 | 935 | ABCA7 "ATP-binding cassette A7 | 0.96 | 0.821 | 0.606 | 2.1e-259 | |
| TAIR|locus:2100337 | 901 | ABCA8 "ATP-binding cassette A8 | 0.79 | 0.701 | 0.613 | 8.6e-241 | |
| DICTYBASE|DDB_G0291980 | 845 | abcA9 "ABC transporter A famil | 0.192 | 0.182 | 0.475 | 1.3e-48 | |
| TAIR|locus:2100367 | 983 | ABCA2 "ATP-binding cassette A2 | 0.172 | 0.140 | 0.464 | 1.9e-41 | |
| DICTYBASE|DDB_G0271140 | 839 | abcA7 "ABC transporter A famil | 0.563 | 0.537 | 0.286 | 3.2e-41 | |
| TAIR|locus:2054366 | 1882 | ABCA1 "ATP-binding cassette A1 | 0.527 | 0.224 | 0.308 | 3.9e-38 | |
| UNIPROTKB|E2R3M5 | 1776 | E2R3M5 "Uncharacterized protei | 0.507 | 0.228 | 0.285 | 1.1e-33 | |
| UNIPROTKB|Q86UK0 | 2595 | ABCA12 "ATP-binding cassette s | 0.518 | 0.159 | 0.276 | 3.1e-33 | |
| UNIPROTKB|F1SP55 | 1293 | ABCA1 "Uncharacterized protein | 0.188 | 0.116 | 0.448 | 4.3e-33 | |
| UNIPROTKB|G5E556 | 2531 | ABCA12 "Uncharacterized protei | 0.518 | 0.163 | 0.280 | 6.4e-33 |
| TAIR|locus:2100322 ABCA7 "ATP-binding cassette A7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2482 (878.8 bits), Expect = 2.1e-259, Sum P(2) = 2.1e-259
Identities = 474/781 (60%), Positives = 579/781 (74%)
Query: 7 PEPASFCTQTNALLRKNLTFQKRNVKTNIRLILFPFXXXXXXXXXXXXXXXXXSNSDDYK 66
P PASF T+ NALLRKNLT+QKRN+ +NIRLI+ PF +NS D +
Sbjct: 4 PGPASFSTRANALLRKNLTYQKRNLWSNIRLIMIPFYLCILLVIIQILFDTQVNNSADNR 63
Query: 67 CGCNCV-RKSGSDCVEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLT 125
CGC C+ R C E CG+E+S P QA FC IPRPP WPP+LQ+P PE R VR
Sbjct: 64 CGCECIERNRAGKCQRELCGLEHSKPDQAFFCSIPRPPLWPPLLQIPRPESRDVRG---- 119
Query: 126 YPDLPNESCRIDGSCPATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSD 185
L ++SCR GSCP TIL TGNN+S G T+++++F + S N S+++ +LA+NVLG+
Sbjct: 120 ---LRDDSCRRTGSCPVTILFTGNNRSLGTTVSENLFTSSVSANASEILRTLANNVLGTT 176
Query: 186 SKTEITNYVEPAFVSDSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSS 245
+ + TNY++P S+ IY IQ +C +++F + + +RC+QG NLW +S
Sbjct: 177 VEADFTNYLDPGIASNLSIYNIQPRCILNATFPFSFEQPPLKFEKELRCVQGSNLWTNTS 236
Query: 246 SEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLR 305
E+ND++++G++KGN + + NEI AAYD LN+D FNV+IWYNSTYK+D GN I L+R
Sbjct: 237 KEVNDKIFKGYKKGNPEGKINEIAAAYDLLNTDRNNFNVHIWYNSTYKDDAGNRLIKLIR 296
Query: 306 VPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFP 365
VPRS+NL SNAYL+ L GPGT++LF++VKEMPK ++ L+LD++S+IG LFFTWV+L LFP
Sbjct: 297 VPRSVNLVSNAYLQFLQGPGTRMLFEYVKEMPKPETSLRLDIASLIGPLFFTWVILLLFP 356
Query: 366 VILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFT 425
VIL++LVYEKQQ LRI+MKMHGLGDGPYW+ISYAYF IS +Y++C ++FGS IGL+FF
Sbjct: 357 VILSSLVYEKQQHLRIIMKMHGLGDGPYWMISYAYFLTISVLYVICLMIFGSAIGLKFFR 416
Query: 426 LNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVED 485
LNSY IQFVFY +Y+NLQIALAFLV+++FS VKT++V YI VFG+GLLG FLL +ED
Sbjct: 417 LNSYSIQFVFYFLYLNLQIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLIED 476
Query: 486 PSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIM 545
SFPR WI MELYPGF+LYRGLYE ++FRG+ G DGM W D DS M +V I+
Sbjct: 477 SSFPRGWIIVMELYPGFSLYRGLYELAQFAFRGNLRGEDGMKWKDFGDS--AMDDVFYII 534
Query: 546 FVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNXXXXXXXXXXXXXLGRQDSKVFVSMEKP 605
VEW L L AYY+DKI SSG + PL+FLQN L RQ SKV V MEKP
Sbjct: 535 VVEWFLALIAAYYIDKISSSG--RNPLFFLQNPFKKSPSLRRPS-LQRQGSKVSVDMEKP 591
Query: 606 DVTXXXXXXXXXXXXPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
DVT TSHAI+ DNL+K+YPGRDGNP K+AV GLSLA+PSGECFGMLG
Sbjct: 592 DVTHESKKVERLMLESSTSHAIVCDNLKKVYPGRDGNPPKLAVRGLSLAVPSGECFGMLG 651
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725
PNGAGKT+FI+MM G+ + TSGTA VQGLDI DMDR+YTSMGVCPQ DLLWETLTGREH
Sbjct: 652 PNGAGKTSFINMMTGLLKPTSGTALVQGLDICNDMDRVYTSMGVCPQHDLLWETLTGREH 711
Query: 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
LLFYGRLKNLKG L QAVEESLKSVNLFHGGVADK AGKYSGGMKRRLSVAISLIGNPK
Sbjct: 712 LLFYGRLKNLKGADLNQAVEESLKSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPK 771
Query: 786 V 786
V
Sbjct: 772 V 772
|
|
| TAIR|locus:2100337 ABCA8 "ATP-binding cassette A8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2039 (722.8 bits), Expect = 8.6e-241, Sum P(2) = 8.6e-241
Identities = 396/646 (61%), Positives = 477/646 (73%)
Query: 141 PATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKTEITNYVEPAFVS 200
PAT L TGNNQS G L +M+ N S LA VLGS S TN+++ AF+S
Sbjct: 114 PATFLFTGNNQSLGNILMGNMYS-----NSSGFDGDLAYYVLGSSSFPAYTNHMDSAFIS 168
Query: 201 DSPIYTIQSQCRPDSSFVVPVKVASINISLVIRCLQGLNLWRKSSSEINDELYRGFRKGN 260
D PIY IQ +C P+SSF + + + + + C+QGLNLWR SSS++N+EL++G+RKGN
Sbjct: 169 DLPIYNIQHECSPNSSFSILIHQSPLAFPKEVNCVQGLNLWRNSSSDVNNELFKGYRKGN 228
Query: 261 SKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPIGLLRVPRSINLASNAYLRS 320
++ NE A+DF N++ NV++WYNSTYKNDT P+ L+RVPR +NLASNAYL
Sbjct: 229 PDKKINEFAGAFDFQNTNGNNLNVSVWYNSTYKNDTVVRPMALIRVPRLVNLASNAYLEF 288
Query: 321 LLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLR 380
L G T+ILF++VKEMPK ++KL LD++S+IG LFFTWV+L LFPVILT LVYEKQQ+LR
Sbjct: 289 LKGSETKILFEYVKEMPKPETKLSLDIASLIGPLFFTWVILLLFPVILTTLVYEKQQRLR 348
Query: 381 IMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYI 440
IMMKMHGLGD PYW++SY YF IS +YMLCF +FGS+IGL FF LN Y IQ VF+ I I
Sbjct: 349 IMMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIFGSLIGLNFFRLNDYSIQLVFFFICI 408
Query: 441 NLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYP 500
NLQI++AFL +A+FS+VKTA+VI YI VFGTGLLG FL Q F+EDP FPR WI AMELYP
Sbjct: 409 NLQISVAFLASAMFSDVKTATVIAYIYVFGTGLLGIFLFQFFLEDPLFPRGWIIAMELYP 468
Query: 501 GFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVD 560
GF+LYRGLYE +F G G DGM W D NGMKEV IM +EWLLLLG+AYY+D
Sbjct: 469 GFSLYRGLYELSQSAFAGDYRGIDGMKWRDFG---NGMKEVTCIMLIEWLLLLGLAYYID 525
Query: 561 KILSSGGAKGPLYFLQNXXXXXXXXXXXXXLGRQDSKVFVSMEKPDVTXXXXXXXXXXXX 620
+I+ S K PL+FL + SKV V MEKPDV
Sbjct: 526 QIIYS--RKHPLFFLLQSTSKKKQHFSDNKI----SKVVVEMEKPDVCREREKVEQCLLK 579
Query: 621 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680
A++ +NL+K+Y G+DGNP+K+AV GLSLALP GECFGMLGPNGAGKT+FI+MM G
Sbjct: 580 STRDSAVLCNNLKKVYSGKDGNPQKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMTG 639
Query: 681 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 740
I + +SGTA+VQGLDI TDMDRIYT++GVCPQ DLLWE L+GREHLLFYGRLKNLKG L
Sbjct: 640 IIKPSSGTAFVQGLDILTDMDRIYTTIGVCPQHDLLWEKLSGREHLLFYGRLKNLKGSVL 699
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
TQAVEESL+SVNLFHGG+ DKQ KYSGGMKRRLSVAISLIG+PKV
Sbjct: 700 TQAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKV 745
|
|
| DICTYBASE|DDB_G0291980 abcA9 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 76/160 (47%), Positives = 101/160 (63%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+I + L K Y GR P K +V+ L L++ GE G LG NGAGKTT ISM+ G+ TS
Sbjct: 531 VIIEGLTKHYVGR---P-KPSVDNLYLSVRKGEVLGFLGANGAGKTTTISMLTGLYTPTS 586
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
GTA+V GLDIR DMD I+ +GV Q D+ WE L+ E LL++ RLK + Q+VE
Sbjct: 587 GTAHVAGLDIRYDMDNIHHVIGVAMQFDIFWEDLSCVETLLYFTRLKGVPPEREIQSVES 646
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
LK VNLF V ++ + SGGMKRRLS A+++ G+ +
Sbjct: 647 ILKEVNLFE--VKERLVKELSGGMKRRLSFAVAMTGDSSI 684
|
|
| TAIR|locus:2100367 ABCA2 "ATP-binding cassette A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 66/142 (46%), Positives = 89/142 (62%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 704
A+ GL + + + F +LGPNGAGKTT I+ + G+ T G A + G IR+ M I
Sbjct: 546 ALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDALIYGNSIRSSVGMSNIR 605
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764
+GVCPQ D+LW+ L+G EHL + +K L ++ VE+SL V L G +AG
Sbjct: 606 KMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSMVEKSLAEVKLTEAGKI--RAG 663
Query: 765 KYSGGMKRRLSVAISLIGNPKV 786
YSGGMKRRLSVA+SLIG+PK+
Sbjct: 664 SYSGGMKRRLSVAVSLIGDPKL 685
|
|
| DICTYBASE|DDB_G0271140 abcA7 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 141/492 (28%), Positives = 226/492 (45%)
Query: 316 AYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTWVVLQLFPVILTALVYEK 375
+++ LL ++ + +P + D++S++G FF + + + P+ + ++VYEK
Sbjct: 207 SFINYLLNGNGVVVKTQISTLPYIYKSQQFDIASLLGGSFFPFALSFVLPLFMYSIVYEK 266
Query: 376 QQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVF 435
Q+KLR + M GL YW++++ + F + + + S + F S F+
Sbjct: 267 QEKLRDLSLMMGLKMRNYWIMTFIFNFLTYVVIVSVISLICSAAKVSLFVKGSPFALFLL 326
Query: 436 YIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITA 495
++ ++ AF ++ F + AS+ GY V L + L P F W+
Sbjct: 327 LFLWGLSMVSFAFFLSTFFKRTRAASIFGYFFVMVMVNLNSTLSLFNTSVPVF-YYWV-- 383
Query: 496 MELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGI 555
P A RG+ G +W D E + +L +F++ ++ L +
Sbjct: 384 ----PILAFSRGISTLCGLCGNGLCPPLSQYTW----DFE--LSRILFWLFIDTIVYLTL 433
Query: 556 AYYVDKILSS--GGAKGPLYFLQNXXXXXXXXXXXXXL----GRQDSKVFVS-------- 601
A Y+DK+L G PL+F+++ L G + ++
Sbjct: 434 AVYLDKVLPREFGVPSHPLFFIKDLKELFSKKGKYRKLRDGDGINEKTKLINEYTIDGIN 493
Query: 602 -------MEKPDVTXXXXXXXXXXXXPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLA 654
+ DV P +I LRK +PGR P K A++ L L+
Sbjct: 494 NDDDDDGLMDEDVKKERDMIVKGEYNP-EEMTLIVQGLRKQFPGR---P-KPALSNLYLS 548
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED 714
+ GE G LGPNGAGKTT IS++ G+ TSGTA++ GLDIR DMD+I+ +GV Q D
Sbjct: 549 VKKGEVLGYLGPNGAGKTTSISILTGLYTPTSGTAHIAGLDIRYDMDKIHQVIGVVMQFD 608
Query: 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774
+LWE LT E +L+Y RLK ++ LK VNL V D+ + SGGMKRRL
Sbjct: 609 VLWEDLTCEETILYYTRLKGTPKSIEFESTHNILKEVNLLD--VKDRFVKELSGGMKRRL 666
Query: 775 SVAISLIGNPKV 786
S AI++ G +
Sbjct: 667 SFAIAMTGESSI 678
|
|
| TAIR|locus:2054366 ABCA1 "ATP-binding cassette A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 3.9e-38, P = 3.9e-38
Identities = 143/464 (30%), Positives = 220/464 (47%)
Query: 339 TDSKLKLDVSSIIGTLFFTWVVLQLFPV--ILTALVYEKQQKLRIMMKMHGLGDGPY--- 393
TD + + V S++G L+ LFP+ +++ V+EK+QK+R + M GL D +
Sbjct: 267 TDDEFQSIVKSVMGLLYLLGF---LFPISRLISYSVFEKEQKIREGLYMMGLKDEIFHLS 323
Query: 394 WLISYAYFFCI-SSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAA 452
W I+YA F + S I C GS+ F + + F ++ ++ I L+F+++
Sbjct: 324 WFITYALQFALCSGIITAC--TMGSL-----FKYSDKTLVFTYFFLFGLSAIMLSFMIST 376
Query: 453 LFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRW-ITAMELYP-GFALYRGLYE 510
F+ KTA +G + LGAF V D S + A L P FAL G
Sbjct: 377 FFTRAKTAVAVGTLT-----FLGAFFPYYTVNDESVSMVLKVVASLLSPTAFAL--GSIN 429
Query: 511 FGTYSFRGHSMGTDGMSWADLSDSENGMK--EVLIIMFVEWLLLLGIAYYVDKILS-SGG 567
F Y R H G+ W+++ + +G+ L++M ++ +L + Y+DK+L G
Sbjct: 430 FADYE-RAHV----GLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENG 484
Query: 568 AKGPLYFLQNXXXXXXXXXXXXXLGRQDSKVF-----VSMEKPDVTXXXXXXXXXXXXPG 622
+ P F+ + + ++ +F V+ +P
Sbjct: 485 VRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQEL 544
Query: 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682
I NL K+Y R GN AVN L L L + +LG NGAGK+T ISM++G+
Sbjct: 545 DGRCIQVRNLHKVYASRRGNC--CAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLL 602
Query: 683 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742
TSG A + G I T+MD I +GVCPQ D+L+ LT REHL + LK ++ +L
Sbjct: 603 PPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEGSLKS 662
Query: 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V + + V L + SGGMKR+LS+ I+LIGN KV
Sbjct: 663 TVVDMAEEVGL--SDKINTLVRALSGGMKRKLSLGIALIGNSKV 704
|
|
| UNIPROTKB|E2R3M5 E2R3M5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 126/442 (28%), Positives = 206/442 (46%)
Query: 354 LFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCF- 412
L +++ ++L +I+ ++ EK++K++ M M G+ + +W + FF IS++ ++ F
Sbjct: 264 LMLSFICIEL--IIINSIALEKERKMKEYMCMMGVNNWQHWAAWFIMFF-ISTLIVISFM 320
Query: 413 -VVFG-SVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFG 470
++F V G+ F + + FVF + + I AF+++ F A+ G I F
Sbjct: 321 TILFCIEVHGVVVFRNSDPSLIFVFLLCFATATILFAFMISTFFQKAHVATAAGGIIFFF 380
Query: 471 TGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWAD 530
T L +L S+ + F + A L A+ G+ ++ RG GM W
Sbjct: 381 TYLPYLYLTFSYPQRTYFQK---VAFCLLSNIAMALGVRLISSFEIRG-----TGMRWKH 432
Query: 531 LS--DSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSG-GAKGPLYFLQNXXXXXXXXXX 587
+ E VL+++ ++ +L +A+YV+ +L G P YF
Sbjct: 433 VGGLSGEFNFSHVLVMLVLDSVLYGLVAWYVEAVLPGEYGIPKPWYFF---------VMP 483
Query: 588 XXXLGRQDSKVFVSMEKPDVTXXXXXXXXXXXXPGTSHAIISDNLRKIYPGRDGNPEKVA 647
GR S ++ D + I L K+Y + G + VA
Sbjct: 484 SHWQGRSSSLTRSVLDVGDPDKASESKFIQEEPTDLAKGIEIRQLYKVY--QTGKSKHVA 541
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707
V GL++ L G+ +LG NGAGKTT M+ G+ +SG Y+ G DI ++ +I SM
Sbjct: 542 VKGLTMNLYQGQITVLLGHNGAGKTTMCCMLTGVLAPSSGWVYINGYDISCNVAQIRKSM 601
Query: 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ--AGK 765
G CPQ D+L++ T EHL FY RLK L + V+ L + G+ DK+ K
Sbjct: 602 GWCPQHDILFDNFTVAEHLYFYARLKGLSCHKCPEEVQRMLHVL-----GLEDKRDALSK 656
Query: 766 Y-SGGMKRRLSVAISLIGNPKV 786
+ SGG KR+LS+ I+LI KV
Sbjct: 657 FLSGGTKRKLSIGIALIAGSKV 678
|
|
| UNIPROTKB|Q86UK0 ABCA12 "ATP-binding cassette sub-family A member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 123/445 (27%), Positives = 208/445 (46%)
Query: 354 LFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPY---WLISYAYFFCISSIYML 410
L WVV + LVYEK +L MKM G+ + WLI F ++ + ++
Sbjct: 1073 LMVAWVVF--IAAFVKKLVYEKDLRLHEYMKMMGVNSCSHFFAWLIESVGFLLVTIVILI 1130
Query: 411 CFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFG 470
+ FG+++ N + I F+++ Y IA+++L++ F+N A++IG + ++
Sbjct: 1131 IILKFGNILP----KTNGF-ILFLYFSDYSFSVIAMSYLISVFFNNTNIAALIGSL-IYI 1184
Query: 471 TGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWAD 530
+L + + S+ + ++ L P Y Y Y +G + + M +
Sbjct: 1185 IAFFPFIVLVTVENELSYVLKVFMSL-LSPTAFSYASQY-IARYEEQGIGLQWENMYTSP 1242
Query: 531 LSDSENGMKEVLIIMFVEWLLLLGIAYYVDKIL-SSGGAKGPLYF-LQNXXXXXXXXXXX 588
+ D + ++ + + IA+YV + + G P YF +
Sbjct: 1243 VQDDTTSFGWLCCLILADSFIYFLIAWYVRNVFPGTYGMAAPWYFPILPSYWKERFGCAE 1302
Query: 589 XXLGRQDSKVF--VSMEKPDVTXXXXXXXXXXXXPGTSHAIISDNLR---KIYPGRDGNP 643
+ + +F + M+ + + P + L KIY G+
Sbjct: 1303 VKPEKSNGLMFTNIMMQNTNPSASPEYMFSSNIEPEPKDLTVGVALHGVTKIY----GS- 1357
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
KVAV+ L+L G +LGPNGAGKTT ISM+ G+ ++GT +V G DI+TD+ +
Sbjct: 1358 -KVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1416
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADK 761
+MGVC Q D+L+ LT +EHLL YG +K + L + V+ +LK L+ K
Sbjct: 1417 RKNMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSH--RHK 1474
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKV 786
+ G SGGMKR+LS++I+LIG +V
Sbjct: 1475 RVGTLSGGMKRKLSISIALIGGSRV 1499
|
|
| UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 70/156 (44%), Positives = 99/156 (63%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
NL K+Y RDG KVAV+GL+L G+ LG NGAGKTT +S++ G+ TSGTAY
Sbjct: 906 NLMKVY--RDGM--KVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 961
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
+ G DIR++M I ++GVCPQ ++L++ LT EH+ FY RLK L + +E+
Sbjct: 962 ILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALD 1021
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V L + K + + SGGM+R+LSVA++ +G KV
Sbjct: 1022 VGLPPSKLKSKTS-QLSGGMQRKLSVALAFVGGSKV 1056
|
|
| UNIPROTKB|G5E556 ABCA12 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 6.4e-33, P = 6.4e-33
Identities = 125/445 (28%), Positives = 208/445 (46%)
Query: 354 LFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPY---WLISYAYFFCISSIYML 410
L WVV + LVYEK +L MKM G+ + WLI F I+ ++
Sbjct: 1011 LMVAWVVF--IAAFVKKLVYEKDLRLHEYMKMMGVNSCSHFFAWLIESVAFLLITIGILI 1068
Query: 411 CFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFG 470
+ FG+++ N + I F+++ Y IA+++L++A F++ A++IG + ++
Sbjct: 1069 IILKFGNILP----KTNGF-ILFLYFSDYSFSVIAMSYLISAFFNSTNIAALIGSL-IYI 1122
Query: 471 TGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWAD 530
+L + + S+ + ++ L P Y G Y Y +G + + M +
Sbjct: 1123 IAFFPFIVLITVENELSYVIKVFMSL-LSPTAFSYAGQY-IARYEEQGIGLQWENMYSSP 1180
Query: 531 LSDSENGMKEVLIIMFVEWLLLLGIAYYVDKIL-SSGGAKGPLYF--LQNXXXXX---XX 584
+ D + ++ + + IA+YV + + G P YF L +
Sbjct: 1181 VQDDTTSFGWLCCLILADSFIYFLIAWYVRNVFPGTYGMAAPWYFPFLPSYWKERLGCAE 1240
Query: 585 XXXXXXLGRQDSKVFVSMEKPDVTXXXXXXXXXXXXP-GTSHAIISDNLRKIYPGRDGNP 643
G + + + P + P + + + KIY G+
Sbjct: 1241 VNHEKSNGLMFTNIMMQNTNPSASPEYKFSSNIEPEPKDLTVGVALHGVTKIY----GS- 1295
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
K+AV+ L+L G +LGPNGAGKTT ISM+ G+ ++GT +V G DIRTD+ +
Sbjct: 1296 -KIAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIRTDLHVV 1354
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADK 761
+MGVC Q D+L+ LT +EHLL YG +K + L + V+ +LK L+ K
Sbjct: 1355 RKNMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSH--RHK 1412
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKV 786
+ G SGGMKR+LS++I+LIG +V
Sbjct: 1413 RVGTLSGGMKRKLSISIALIGGSRV 1437
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9STT5 | AB7A_ARATH | No assigned EC number | 0.6325 | 0.96 | 0.8213 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 800 | |||
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-59 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-47 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-43 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-38 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-37 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-35 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-33 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-32 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-29 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-28 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-25 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-25 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-24 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-23 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-22 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-21 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-19 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-19 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-18 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-17 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-16 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-16 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-16 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-15 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-15 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-14 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-14 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-13 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-12 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-11 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-10 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 6e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-09 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-09 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-08 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-07 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-05 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 6e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| pfam12730 | 230 | pfam12730, ABC2_membrane_4, ABC-2 family transport | 7e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-05 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-04 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.001 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.001 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.002 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.002 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.002 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.002 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.002 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 0.002 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.003 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.003 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.003 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.004 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 3e-59
Identities = 78/160 (48%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ NL K Y K AV+ LSL + GE FG+LG NGAGKTT + M+ G R TS
Sbjct: 1 LQIRNLTKTY----KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
GTAY+ G IRTD S+G CPQ D L++ LT REHL FY RLK L + + VE
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ + L A+K+A SGGMKR+LS+AI+LIG P V
Sbjct: 117 LLRVLGLTD--KANKRARTLSGGMKRKLSLAIALIGGPSV 154
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-47
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 7/161 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
I NL K Y G +K A++G+S + GE FG+LGPNGAGKTT + ++ G+ + T
Sbjct: 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
SG V G D+ + ++ +G PQE L+ LT RE+L F+ RL L + +E
Sbjct: 59 SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE 118
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E L+ L A+K+ SGGMK+RLS+A++L+ +P++
Sbjct: 119 ELLELFGL--EDKANKKVRTLSGGMKQRLSIALALLHDPEL 157
|
Length = 293 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-43
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +NL K Y AV G+S + GE FG+LGPNGAGKTT I M+ + + TS
Sbjct: 1 IEVENLVKKY---GDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
G A V G D+ + + +G+ Q+ + + LTG E+L + RL + G + ++E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L V L AD+ YSGGM+RRL +A SL+ P+V
Sbjct: 115 LLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 2/141 (1%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705
AV+G++ + GE FG LGPNGAGKTT I M+ + R TSGTA V G D+ + ++
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
S+G+ PQ + E LTGRE+L GRL L + EE L+ L AD+ G
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA--ADRPVGT 124
Query: 766 YSGGMKRRLSVAISLIGNPKV 786
YSGGM+RRL +A SLI P V
Sbjct: 125 YSGGMRRRLDIAASLIHQPDV 145
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ +NL K Y K A++G+SL L G +G+LGPNGAGKTT + ++ +T +S
Sbjct: 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS 53
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
GT + G D+ ++ +G PQE ++ T RE L + LK + + V+E
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ VNL G A K+ G SGGM+RR+ +A +L+G+P +
Sbjct: 114 VLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 130 bits (331), Expect = 4e-35
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 44/157 (28%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL K Y K A++ +SL + GE +G+LGPNGAGKTT I +++G+ + SG
Sbjct: 4 RNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
V G DI+ + + + +G P+E L+E LT RE+L
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL----------------------- 94
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
K SGGMK+RL++A +L+ +P++
Sbjct: 95 ---------------KLSGGMKQRLALAQALLHDPEL 116
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 4e-33
Identities = 80/187 (42%), Positives = 110/187 (58%), Gaps = 11/187 (5%)
Query: 603 EKPDVTQERERVEQLLLEPGTSHAIISDN-LRKIYPGRDGNPEKVAVNGLSLALPSGECF 661
E DV +ER+R+ + G I+ N L K+Y G +P AV+ L + + GECF
Sbjct: 1917 EDDDVAEERQRI----ISGGNKTDILRLNELTKVYSG-TSSP---AVDRLCVGVRPGECF 1968
Query: 662 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 721
G+LG NGAGKTT M+ G T TSG A V G I T++ ++ +MG CPQ D + + LT
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028
Query: 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781
GREHL Y RL+ + + + S++S+ L AD+ AG YSGG KR+LS AI+LI
Sbjct: 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNKRKLSTAIALI 2086
Query: 782 GNPKVRL 788
G P + L
Sbjct: 2087 GCPPLVL 2093
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-32
Identities = 129/457 (28%), Positives = 210/457 (45%), Gaps = 44/457 (9%)
Query: 350 IIGTLFFTWVVLQ-LFPVILT--ALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISS 406
I+ F ++VL ++ V +T ++V EK+ +L+ +K G+ + W + F I S
Sbjct: 650 ILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMS 709
Query: 407 IYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYI 466
+ + +F ++ R + I F+F + + I FL++ FS A+ +
Sbjct: 710 MSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGV 767
Query: 467 CVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGT-YSFRGHSMGTDG 525
F T L L F TA+ L A + FGT Y R G G
Sbjct: 768 IYF-TLYLPHIL--CFAWQDRMTADLKTAVSLLSPVA-----FGFGTEYLVRFEEQGL-G 818
Query: 526 MSWADLSDSENGMKEVLIIMFVEWLLLLG-----IAYYVDKILSSG-GAKGPLYFLQN-- 577
+ W+++ +S E ++ ++ +LL +A+Y+D++ G P YFL
Sbjct: 819 LQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQES 878
Query: 578 -FKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQ-------ERERVEQLLLEPGTSHAIIS 629
+ S R+ + + ME P+ + ERE PG +
Sbjct: 879 YWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFEREL-------PGLVPGVCV 931
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL KI+ G P AV+ L++ + LG NGAGKTT +S++ G+ TSGT
Sbjct: 932 KNLVKIFEPS-GRP---AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV 987
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
V G DI T++D + S+G+CPQ ++L+ LT EH+LFY +LK +E L+
Sbjct: 988 LVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE 1047
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L H +++A SGGM+R+LSVAI+ +G+ KV
Sbjct: 1048 DTGLHHK--RNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-29
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +D L K + RD AV+G+S + GE G+LGPNGAGKTT + M+ G+ +
Sbjct: 2 ITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
G A V G D+ + +G L++ LT RE+L ++ L LKG LT +EE
Sbjct: 60 GFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE 119
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + D++ G +S GM++++++A +L+ +P V L
Sbjct: 120 LADRLGMEE--LLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-28
Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 621 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680
P + I N+ K Y +K+ V+GLS + GECFG+LGPNGAGKTT + M++G
Sbjct: 2 PMSVAPIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55
Query: 681 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 740
+T +G+ + G + + +GV PQ D L T RE+LL +GR L A
Sbjct: 56 LTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V L+ L + AD + G+ SGGMKRRL++A +L+ +P V
Sbjct: 116 RALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDV 159
|
Length = 306 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+K ++ +SL + GE +G LGPNGAGKTT + +++G+ + SG G
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEA 70
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+G + + LT RE+L RL ++ + ++E L V L A K+
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGL--KDSAKKKV 124
Query: 764 GKYSGGMKRRLSVAISLIGNP 784
+S GMK+RL +A++L+GNP
Sbjct: 125 KGFSLGMKQRLGIALALLGNP 145
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AV +S GE G+LG NGAGKTT + M+ + SG + G+D D +
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+GV E L+ LT RE+L ++ RL L + + E K + L D++ G++
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL--LEYLDRRVGEF 134
Query: 767 SGGMKRRLSVAISLIGNPKV 786
S GMK+++++A +L+ +P +
Sbjct: 135 STGMKQKVAIARALVHDPSI 154
|
Length = 245 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 12/163 (7%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
AI + K Y K VNGLS + SGECFG+LGPNGAGK+T M++G+T
Sbjct: 41 AIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD 94
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
+G V G+ + +GV PQ D L T RE+LL +GR + T+ +E
Sbjct: 95 AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----TREIE 150
Query: 746 ESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ S+ F AD + SGGMKRRL++A +LI +P++
Sbjct: 151 AVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193
|
Length = 340 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
NL K + + AVN +SL +P +G+LGPNGAGK+T + M+ GI R TSG
Sbjct: 5 NLSKRFGKQT------AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 691 VQGLD-IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
G R D+ +I G + L+E LT RE+L + L L ++E L
Sbjct: 59 FDGHPWTRKDLHKI----GSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLN 110
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V+L + G K+A ++S GMK+RL +AI+L+ +PK+
Sbjct: 111 IVDLTNTG--KKKAKQFSLGMKQRLGIAIALLNHPKL 145
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
AI + K Y KV VN LS + GECFG+LGPNGAGK+T M++G+
Sbjct: 4 AIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
G V G + + ++GV PQ D L T RE+LL +GR + + +
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ L AD + SGGMKRRL++A +LI +P++
Sbjct: 118 SLLEFARL--ESKADVRVALLSGGMKRRLTLARALINDPQL 156
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ ++NL K Y R VNG+SL++ GE G+LGPNGAGKTT M++G+ + S
Sbjct: 1 LRAENLSKRYGKR------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS 54
Query: 687 GTAYVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 743
G + G DI T + R +G PQE ++ LT E++L ++ L +
Sbjct: 55 GKILLDGQDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113
Query: 744 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+EE L+ ++ H + +A SGG +RR+ +A +L NPK L
Sbjct: 114 LEELLEEFHITH--LRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 26/159 (16%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 704
VA++ +S ++ GE G++GPNGAGKTT +++ G R TSG+ G DI I
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI- 72
Query: 705 TSMGVC-----PQEDLLWETLT------------GREHLLFYGRLKNLKGPALTQAVEES 747
+G+ P+ L+ LT LL + + + EE
Sbjct: 73 ARLGIGRTFQIPR---LFPELTVLENVMVAAQARTGSGLLLARARREER--EARERAEEL 127
Query: 748 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ V L +AD+ AG+ S G +RRL +A +L +PK+
Sbjct: 128 LERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKL 164
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 3e-21
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K + A++ +S ++ GE FG+LGPNGAGKTT I M++GI SG
Sbjct: 5 NVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
G + +G P+E L+ + + L++ +LK LK + ++E L+
Sbjct: 59 FDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ L A+K+ + S G ++++ ++I +P++
Sbjct: 116 LEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 8e-21
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 12/166 (7%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
++++NL K Y R KV VN +SL + SGE G+LGPNGAGKTT M++G+ R S
Sbjct: 5 LVAENLAKSYKKR-----KV-VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 687 GTAYVQGLDIRTD-MD-RIYTSMGVCPQEDLLWETLTGREHLLFYGRL--KNLKGPALTQ 742
G + DI M R +G PQE ++ LT ++++ + K+LK +
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
++ L+ ++ H + D +A SGG +RR+ +A +L NPK L
Sbjct: 119 ELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARALAANPKFIL 162
|
Length = 243 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ L K Y A++ LSL + GE +LGP+G GKTT + ++ G+ R S
Sbjct: 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
G + G D+ T + ++G+ Q+ L+ LT E++ F +L+ + + V E
Sbjct: 55 GEILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE 113
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
L+ V L + ++ + SGG ++R+++A +L P + L
Sbjct: 114 LLELVGLEG--LLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 8e-20
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
A+ + + K + +K AV+ +S +P GE FG+LGPNGAGKTT M++G+
Sbjct: 1 MALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP 54
Query: 685 TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
T G G + I +G P+E L+ +T + L + LK + + + +
Sbjct: 55 TEGEITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
+ L+ + + G K+ + S G ++++ ++I P+
Sbjct: 112 QAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIHEPE 150
|
Length = 300 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 9/164 (5%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
+ N+RK + + ++L + GE +LGP+G GK+T + M+ G+
Sbjct: 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55
Query: 685 TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
TSG + G D+ TD+ + + Q L+ +T E++ F +L+ + + + V
Sbjct: 56 TSGEILIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV 114
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+E K + L H + +++ + SGG ++R+++A +L+ PKV L
Sbjct: 115 KEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKPKVFL 156
|
Length = 338 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 705
A+N LSL + GE ++GPNGAGKTT + ++ G TR G+ G D+ +I
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-A 75
Query: 706 SMGVCP--QEDLLWETLTGREHL-LFYGRLKNLKG-------PALTQAVEESLKSVNLFH 755
G+ Q+ ++E LT E+L L R K++ +EE L+++ L
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-- 133
Query: 756 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
AD+ AG S G K+ L + + L+ +PK+ L
Sbjct: 134 ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLL 166
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-19
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K Y G G A+ +SL++ GE ++GP+G GK+T + ++ G+ R TSG
Sbjct: 4 RNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
V G + G Q+D L LT +++ L+ + + EE L+
Sbjct: 62 LVDG----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G + + SGGM++R+++A +L +P V L
Sbjct: 118 LVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 41/148 (27%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704
+ + +SL++ GE ++GPNGAGK+T + ++G+ + +SG + G +R R+
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76
Query: 705 TSMGVCPQ-EDLLWE-TLTGREHLLF--YGRLKNLKGP--ALTQAVEESLKSVNLFHGGV 758
+G PQ + +T ++ +L YG+ + + V+E+L+ V + +
Sbjct: 77 --IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED--L 132
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
D+Q G+ SGG K+R+ +A +L NP +
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDL 160
|
Length = 254 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ A++ +S + G +LGPNGAGK+T S++ + G V G D+R
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+GV Q+ L L+ R++L ++ L L + E L + L AD +
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL--AERADDKV 130
Query: 764 GKYSGGMKRRLSVAISLIGNPKVRL 788
+ +GG +RR+ +A +L+ P + L
Sbjct: 131 RELNGGHRRRVEIARALLHRPALLL 155
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
+I +L K+Y + A++ +S G G LGPNGAGK+T + ++ G
Sbjct: 2 SIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD 55
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
SG+ V G D+ + + ++G P+ + L+ + RE+L F + +KG L Q VE
Sbjct: 56 SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE 115
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E ++ V L K+ G+ S G ++R+ +A +LI +PKV
Sbjct: 116 EMIELVGL--RPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTD 699
+ + G+ L + GE ++GP+G+GK+T + +++G+ R SG + G DI +
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGV 758
+ R+ MG+ Q L+++LT E++ F R L + + V E L++V L G
Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL--RGA 129
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
D + SGGMK+R+++A +L +P++
Sbjct: 130 EDLYPAELSGGMKKRVALARALALDPEL 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL +P G A++ +S ++ GE G++G +G+GK+T ++G+ + TSG+
Sbjct: 5 KNLSVSFPTGGG--SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62
Query: 690 YVQGLDI---RTDMDRIY-TSMGVCPQ------------EDLLWETLTGREHLLFYGRLK 733
G D+ + +I + + Q + + E L +G+L
Sbjct: 63 IFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP------LRIHGKLS 116
Query: 734 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKV 786
+ A +AV L V L ++ +Y SGG ++R+++A +L NPK+
Sbjct: 117 KKE--ARKEAVLLLLVGVGL-----PEEVLNRYPHELSGGQRQRVAIARALALNPKL 166
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 5e-19
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL YP + A++ +SL + GE ++GPNG+GK+T + ++ G+ TSG
Sbjct: 3 KNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV 58
Query: 690 YVQGLDIR-TDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA--LTQAV 744
V G D+ + + +G+ Q +D + E + +G L+NL P + + V
Sbjct: 59 LVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE--VAFG-LENLGLPEEEIEERV 115
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
EE+L+ V L G+ D+ SGG K+R+++A L +P +
Sbjct: 116 EEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 1e-18
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
NL K Y G G + A+ G+SL++ GE ++GP+G+GK+T ++++ G+ R TSG
Sbjct: 5 NLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62
Query: 691 VQGLDI----RTDMDRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
V G DI ++ +G Q L LT E++ L + + E
Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E L+ V L G + + SGG ++R+++A +L +PK+
Sbjct: 123 ELLERVGL--GDRLNHYPSELSGGQQQRVAIARALANDPKI 161
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
+ +NL Y G+ ++ LS ++P GE G+LGPNG+GK+T + + G+ +
Sbjct: 1 MMLEVENLSFGYGGK------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP 54
Query: 685 TSGTAYVQGLDIRTDMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-----G 737
SG + G DI + + + PQ LT E L+ GR +L
Sbjct: 55 KSGEVLLDGKDIA-SLSPKELAKKLAYVPQSPSAPFGLTVYE-LVLLGRYPHLGLFGRPS 112
Query: 738 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ VEE+L+ + L H +AD+ + SGG ++R+ +A +L +
Sbjct: 113 KEDEEIVEEALELLGLEH--LADRPVDELSGGERQRVLIARALAQETPI 159
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-18
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704
+ +S + GE ++GPNGAGK+T + ++G+ + TSG+ V G + + RI
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI- 70
Query: 705 TSMGVCPQ-EDLLWE-TLTGREHLL--FYGRLKNLKGP--ALTQAVEESLKSVNLFHGGV 758
G PQ + + ++ R+ +L YG + A V+E+L+ V L +
Sbjct: 71 ---GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE--L 125
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
AD+Q G+ SGG ++R+ +A +L+ +P +
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDL 153
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+ + K + G + ++L++ GE +LGP+G GK+T + ++ G+ + TSG
Sbjct: 7 EGVSKSFGGV------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ G + I G QED L LT +++ L+ + +E L+
Sbjct: 61 LLDGRPVTGPGPDI----GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G DK + SGGM++R+++A +L PK+ L
Sbjct: 117 LVGL--AGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153
|
Length = 248 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 632 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691
I + E A+ +S +P GE G++G NGAGK+T + ++ GI SGT V
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 692 QG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
+G L + + LTGRE++ GRL L + + ++E
Sbjct: 82 RGRVSSLLGLGGGFN----------------PELTGRENIYLNGRLLGLSRKEIDEKIDE 125
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
++ L G D YS GMK RL+ AI+ P
Sbjct: 126 IIEFSEL--GDFIDLPVKTYSSGMKARLAFAIATALEP 161
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 704
AVN +SL + GE G++GPNGAGKTT +++ G + +SGT +G DI RI
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 705 TSMGVC---------PQEDLLWETLTGREHLLFYGRLKNLKG-----PALTQAVEESLKS 750
+G+ P +L G L L + E L+
Sbjct: 78 -RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G +AD+ AG S G +RRL +A +L PK+ L
Sbjct: 137 VGL--GELADRPAGNLSYGQQRRLEIARALATQPKLLL 172
|
Length = 250 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 12/163 (7%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ KIY G + A+ ++L + +GE ++GP+G+GK+T ++++ G+ + TSG
Sbjct: 6 NVSKIYG--LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63
Query: 691 VQGLDIRTDMDRIYTS------MGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQA 743
+ G D+ T + + +G Q +LL LT E++ + +A
Sbjct: 64 INGKDL-TKLSEKELAKLRRKKIGFVFQNFNLL-PDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 744 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
EE L+ + L + K+ + SGG ++R+++A +LI NPK+
Sbjct: 122 AEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARALINNPKI 163
|
Length = 226 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 9/159 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ K Y G VA++G+SL + GE F +LGP+G GKTT + ++ G TSG
Sbjct: 4 ENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ G DI T++ + Q L+ LT E++ F RLK L + + V E+L
Sbjct: 58 LLDGKDI-TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G A+++ + SGG ++R+++A +L+ PKV L
Sbjct: 117 LVQL--EGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTD 699
++V ++G+ L +P GE +LG +G+GK+T + +++G+ R G + G DI +
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79
Query: 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGV 758
+ I MGV Q+ L+ +LT E++ F R L + + V L+ V L G
Sbjct: 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGL-RGAA 138
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
AD + SGGM++R+++A ++ +P++
Sbjct: 139 ADLYPSELSGGMRKRVALARAIALDPEL 166
|
Length = 263 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 627 IISDNLRKIYPGRDGNP---------------EKVAVNGLSLALPSGECFGMLGPNGAGK 671
I NL K Y P E A+ G+S + GE G +GPNGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 672 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYG 730
TT + ++ G+ + TSG V GL + +G V Q+ LW L +
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 731 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ +L + ++E + ++L + D + S G + R +A +L+ P++
Sbjct: 121 AIYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQRMRAEIAAALLHEPEI 174
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I N+ K++ G + A+ +SL++P GE FG++G +GAGK+T I + G+ R TS
Sbjct: 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS 59
Query: 687 GTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742
G+ V G D+ ++ + +G+ Q L + T E++ + + + +
Sbjct: 60 GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE 119
Query: 743 AVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRLS 789
V E L+ V L DK A Y SGG K+R+ +A +L NPKV L
Sbjct: 120 RVLELLELVGL-----EDK-ADAYPAQLSGGQKQRVGIARALANNPKVLLC 164
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 6e-16
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 35/159 (22%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSG 687
NL K + +S GE ++GP+GAGK+T ++ + G SG
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 688 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 747
+ G D +G PQ+D+L TLT RE L+F +L+ L
Sbjct: 67 EVLING--RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL------------ 112
Query: 748 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+S+A+ L+ NP +
Sbjct: 113 -------------------SGGERKRVSIALELVSNPSL 132
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 7e-16
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMMIGITRTTSGTAYVQG--LDI 696
N +N +SL + SG+ +LG +G+GKTT IS + TTSG G
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLF 754
+ Q+D+L LT RE L + RL A+ + E + +L
Sbjct: 77 DQFQKCV----AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ SGG +RR+S+A+ L+ +PKV
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 632 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691
L+ + G E A+ +S + GE G++G NGAGK+T + ++ GI + TSG V
Sbjct: 27 LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
Query: 692 QG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
G +++ G P+ LTGRE++ G + L + + V+E
Sbjct: 87 TGKVAPLIEL---------GAGFDPE-------LTGRENIYLRGLILGLTRKEIDEKVDE 130
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
++ L G D+ YS GM RL+ +++ P +
Sbjct: 131 IIEFAEL--GDFIDQPVKTYSSGMYARLAFSVATHVEPDI 168
|
Length = 249 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K YP A++G+++++ +GE ++GP+GAGK+T + ++ TSGT
Sbjct: 5 NVTKTYP-----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 691 VQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
V G D+ + + +GV Q+ L E++ F + + + + V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+L+ V L H + SGG ++R+++A +++ +P +
Sbjct: 120 ALELVGLSHK--HRALPAELSGGEQQRVAIARAIVNSPTI 157
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-15
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ + NL K Y GR V +SL + SGE G+LGPNGAGKTT M++GI +
Sbjct: 4 LTAKNLAKAYKGRR------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA 57
Query: 687 GTAYVQGLDIR--TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQA 743
G + DI R +G PQE ++ L+ ++L+ ++ +L
Sbjct: 58 GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDR 117
Query: 744 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
E ++ ++ H + D SGG +RR+ +A +L NPK
Sbjct: 118 ANELMEEFHIEH--LRDSMGQSLSGGERRRVEIARALAANPK 157
|
Length = 241 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 9e-15
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708
+ LS L +GE + GPNGAGKTT + ++ G+ R +G Y QG I+ +
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------ 72
Query: 709 VCPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 760
+ LL+ LT E+L F+ R G + E+L V L G+ D
Sbjct: 73 --YHQALLYLGHQPGIKTELTALENLHFWQR---FHGSGNAATIWEALAQVGL--AGLED 125
Query: 761 KQAGKYSGGMKRRLSVA 777
G+ S G +RR+++A
Sbjct: 126 LPVGQLSAGQQRRVALA 142
|
Length = 209 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDI-RTDMDRIY 704
A+N LS ++ GE ++GPNGAGKTT + ++ G TR G G D+ + RI
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI- 78
Query: 705 TSMGVCP--QEDLLWETLTGREHL-LFYGRLKNLK---GPALTQA----VEESLKSVNLF 754
G+ Q+ ++E LT RE+L L R K++ L ++E L ++ L
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL- 137
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
G D+ A S G K+ L + + L +PK+ L
Sbjct: 138 -GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL 170
|
Length = 249 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRI 703
A+ G+SL + GE +LG NGAGKTT + ++G+ R SG G DI T + +R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI-TGLPPHERA 76
Query: 704 YTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKGPALTQAVEE---SLKSVNLFHGGV 758
+ P+ ++ LT E+LL Y R + V E LK
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER------- 129
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+++AG SGG ++ L++A +L+ PK+
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKL 157
|
Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-14
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 672 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFY 729
+T + ++ G+ + TSGT + G D R +GV Q+ L+ LT RE+L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 730 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
R A +A EE+L+ V L + + G SGG K+R+++A +L+ PK+
Sbjct: 61 LR----DKEADARA-EEALERVGLPDF-LDREPVGTLSGGQKQRVAIARALLKKPKL 111
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K + AV+ +SL + GE +LGP+G GKTT + M+ G + +SG
Sbjct: 9 RNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 690 YVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVE 745
+ G DI TD+ R +G+ Q L+ +T E++ F +++ A + VE
Sbjct: 63 LLDGEDI-TDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
E+L+ V L G AD++ + SGG ++R+++A +L+ PKV L
Sbjct: 119 EALELVGL--EGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 19/171 (11%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL K YPG A+ ++L + GE ++GP+GAGK+T + + G+ TSG
Sbjct: 7 KNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 690 YVQGLDI-----------RTDMDRIYTSMGVCPQEDLLWETLTGR-EHLLFYGRLKNLKG 737
G+ I R D+ I+ + P+ +L L GR + + L L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 738 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
++L+ V + A ++A SGG ++R+++A +L+ PK+ L
Sbjct: 122 KEDKAQALDALERVGILD--KAYQRASTLSGGQQQRVAIARALVQQPKIIL 170
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL K YP K A+ +SL++ GE ++GP+GAGK+T + + G+ TSG+
Sbjct: 4 ENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 690 YVQGLDIRTDMDRIYTS----MGVCPQEDLLWETLTGREHLLFYGRLK---------NLK 736
+ G DI + +G+ Q+ L E L+ E++L GRL L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS-GRLGRRSTWRSLFGLF 117
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
Q +L+ V L A ++A + SGG ++R+++A +L+ PK+ L
Sbjct: 118 PKEEKQRALAALERVGLLD--KAYQRADQLSGGQQQRVAIARALMQQPKLIL 167
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-14
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ 712
L+ GE G+LGPNGAGKTT + ++G+ GT V G I G PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHI----GYVPQ 56
Query: 713 -EDLLWETLTGREHLLFYGRLKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+ W+ H + GR ++ A AV ++L+ V L +AD+ G+
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE--LADRPVGEL 114
Query: 767 SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+ VA +L P V L
Sbjct: 115 SGGQRQRVLVARALATRPSVLL 136
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 643 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD- 701
K A+ +SL + GE ++GPNG+GK+T + ++ G+ + TSG V GLD ++
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74
Query: 702 -RIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 759
+ +G+ Q D T + + F L + + V E+L+ V L +
Sbjct: 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGL--EELL 132
Query: 760 DKQAGKYSGGMKRRLSVAISLIGNPKV 786
D+ SGG K+R+++A L P++
Sbjct: 133 DRPPFNLSGGQKQRVAIAGVLAMGPEI 159
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-14
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 58/158 (36%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
NL Y GR A++ +SL L +GE ++GPNG+GK+T + + G+ + TSG
Sbjct: 4 NLSFRYGGR------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
+ G DI R + + + Q
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY-----------VPQ-------- 80
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L+ NP + L
Sbjct: 81 ---------------LSGGQRQRVALARALLLNPDLLL 103
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 9e-14
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ +GLS L +GE + GPNG+GKTT + ++ G++ +G + G + D I
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+ + TL+ E+L F+ + + VEE+L V L G D+
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGL--NGFEDRPV 123
Query: 764 GKYSGGMKRRLSVA 777
+ S G +RR+++A
Sbjct: 124 AQLSAGQQRRVALA 137
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 13/167 (7%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
+I N+ K + VA++ +SL +PSGE +LGP+G+GKTT + ++ G+ R
Sbjct: 2 SIEVRNVSKRFGDF------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD 55
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--NLKGPALT-- 741
SGT G D TD+ ++G Q L+ +T +++ F R+K + + P
Sbjct: 56 SGTILFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR 114
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V E LK V L +AD+ + SGG ++R+++A +L PKV L
Sbjct: 115 AKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 19/173 (10%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +N+ K + G A++ +SL +P GE FG++G +GAGK+T + ++ + R TS
Sbjct: 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 687 GTAYVQGLDIRTDMDRI-----YTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPAL 740
G+ +V G D+ T + +G+ Q +LL + T E++ F L + +
Sbjct: 61 GSVFVDGQDL-TALSEAELRQLRQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKAEI 118
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRLS 789
Q V E L+ V L +DK A +Y SGG K+R+++A +L NPK+ L
Sbjct: 119 KQRVAELLELVGL-----SDK-ADRYPAQLSGGQKQRVAIARALANNPKILLC 165
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 32/203 (15%)
Query: 605 PDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGE 659
P + E+ + NL K Y R G E AV+ +S L GE
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ------- 712
G++G +G+GK+T ++ G+ +SG+ G D+ + Q
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE-LRRLRRRIQMVFQDPY 377
Query: 713 ---------EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
D+L E L +G V E L+ V L D+
Sbjct: 378 SSLNPRMTVGDIL------AEPLRIHGGGSG---AERRARVAELLELVGLPP-EFLDRYP 427
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
+ SGG ++R+++A +L PK+
Sbjct: 428 HELSGGQRQRVAIARALALEPKL 450
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 48/163 (29%)
Query: 631 NLRKIYP---GRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
NL+K +P G AV+G+S ++ GE G++G +G GK+T +++G+ TSG
Sbjct: 9 NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68
Query: 688 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 747
+G DI L + V E
Sbjct: 69 EILFEGKDI------------------------------------TKLSKEERRERVLEL 92
Query: 748 LKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKV 786
L+ V G+ ++ +Y SGG ++R+ +A +L NPK+
Sbjct: 93 LEKV-----GLPEEFLYRYPHELSGGQRQRIGIARALALNPKL 130
|
Length = 268 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 705
+ G+SL +P GE +LG NGAGKTT + ++G+ SG+ G DI
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER-A 73
Query: 706 SMGV--CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFH--GGVAD 760
G+ P+ ++ LT E+LL + + L+ V LF
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK------RKARLERVYELFPRLKERRK 127
Query: 761 KQAGKYSGGMKRRLSVAISLIGNPKV 786
+ AG SGG ++ L++A +L+ PK+
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKL 153
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ +N+ K + A++ L+L + GE +LGP+G GKTT + M+ G+ TS
Sbjct: 1 VELENVTKRFG------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
G Y+ G D+ TD+ + + Q L+ +T +++ F +L+ + + + V E
Sbjct: 55 GRIYIGGRDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE 113
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + H + D++ + SGG ++R+++ +++ PKV L
Sbjct: 114 VAELLQIEH--LLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ K Y G K AVN L+L + GE ++GP+G+GKTT + M+ + TSG
Sbjct: 4 ENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 690 YVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
++ G DIR D + +G Q+ L+ +T E++ +L + + +E L
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L AD+ + SGG ++R+ VA +L +P + L
Sbjct: 119 ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-13
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 45/158 (28%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ YPG E + +S ++ GE ++GP+G+GK+T +++G+ R TSG
Sbjct: 4 ENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 690 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+ G DI D + + +G PQ+D
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDD---------------------------------- 85
Query: 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
LF G +A+ SGG ++RL +A +L GNP++
Sbjct: 86 ---ELFSGSIAEN---ILSGGQRQRLGLARALYGNPRI 117
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 41/143 (28%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705
A++ ++L +P+G +LGP+G+GK+T + ++ G+ + SG + G D T +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA-TRVHARDR 72
Query: 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
+G Q L++ LT R+++ F ++ + VEE L+ V L G+ D+ +
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL--EGLGDRYPNQ 130
Query: 766 YSGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L P+V L
Sbjct: 131 LSGGQRQRVALARALAVEPQVLL 153
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +N++K + A++ +SL + SGE +LGP+GAGK+T + ++ G+ +
Sbjct: 3 IRINNVKKRFGAF------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 687 GTAYVQGLDIRTDMDRIYT---SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 743
G + G + D+ + +G Q L+ +T +++ F +++ +
Sbjct: 57 GRIRLNG-RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR 115
Query: 744 --VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
VEE L+ V L G+AD+ + SGG ++R+++A +L PKV L
Sbjct: 116 ARVEELLRLVQL--EGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160
|
Length = 345 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 45/165 (27%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ N+ K Y +K +N +SL + +GE +LGP+G+GK+T + + G+ S
Sbjct: 1 LELKNVSKRYG------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54
Query: 687 GTAYVQGLDIRTDMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 743
G+ + G D+ D + +G+ Q+ L+ LT E++ L
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------GL--- 101
Query: 744 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L +P V L
Sbjct: 102 -----------------------SGGQQQRVALARALAMDPDVLL 123
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709
GLS L +GE + GPNGAGKT+ + ++ G+ R +G QG IR D +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH----- 73
Query: 710 CPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761
+DLL+ LT E+L FY R L GP +A+ E+L V L G D
Sbjct: 74 ---QDLLYLGHQPGIKTELTALENLRFYQR---LHGPGDDEALWEALAQVGL--AGFEDV 125
Query: 762 QAGKYSGGMKRRLSVA 777
+ S G +RR+++A
Sbjct: 126 PVRQLSAGQQRRVALA 141
|
Length = 204 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
NL +Y G G A+N +SL + GE G++G +G+GK+T ++ G+ + +SG+
Sbjct: 7 RNLSIVYGG--GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64
Query: 690 YVQG--LDIRTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
+ G L + Y + + Q L T L L+ Q +
Sbjct: 65 LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIA 122
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E L V L D++ + SGG ++R+++A +LI PK+
Sbjct: 123 ELLDQVGL-PPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162
|
Length = 252 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 7e-13
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +N+ K Y + AV+ ++L + GE ++GP+G+GKTT + M+ + TS
Sbjct: 2 IEFENVSKRYGNKK------AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS 55
Query: 687 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
G + G DI D + +G Q+ L+ LT E++ +L + + +
Sbjct: 56 GEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD 115
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
E L V L AD+ + SGG ++R+ VA +L +P + L
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158
|
Length = 309 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ K YPG + A+ +S +P GE + GP+GAGK+T + ++ G R T G
Sbjct: 5 ENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 690 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
V G D+ ++ + +GV Q+ L T E++ R+ + + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
E L V L A + SGG ++R+++A +++ P V L
Sbjct: 120 EVLDLVGL--KHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K YPG A++ +SL + GE + GP+GAGKTT + ++ G + G
Sbjct: 5 HNVSKAYPG---GVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 690 YVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
+ G D+ + +GV Q+ L T E++ ++ K + + V
Sbjct: 60 RIAGEDV-NRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+L+ V L H AD + SGG ++R+++A +++ +P + L
Sbjct: 119 GAALRQVGLEHK--ADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
E++ GLS L +GE + GPNG GKTT + ++ G+ R SG G + D
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE- 70
Query: 704 YTSMGVCPQEDLLW--------ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 755
P ++L+ L+ E+L F+ + G A +E++L +V L
Sbjct: 71 -------PHRNILYLGHLPGLKPELSALENLHFWAA---IHGGAQR-TIEDALAAVGL-- 117
Query: 756 GGVADKQAGKYSGGMKRRLSVA 777
G D A + S G +RRL++A
Sbjct: 118 TGFEDLPAAQLSAGQQRRLALA 139
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 34/139 (24%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709
+SL + G+ F +LGP G+GK+ + + G + SG + G DI T++ +
Sbjct: 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISY 75
Query: 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769
PQ L+ +T +++ + + + + + + V E + + + H + +++ SGG
Sbjct: 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH--LLNRKPETLSGG 133
Query: 770 MKRRLSVAISLIGNPKVRL 788
++R+++A +L+ NPK+ L
Sbjct: 134 EQQRVAIARALVVNPKILL 152
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 32/220 (14%)
Query: 574 FLQNFKKKSRSSFRKPSLGRQDSKVFVSMEK-PDVTQERERVEQLLLEPGTSHAIIS--- 629
+++ K + + K + R K +E + E + L +
Sbjct: 266 WIRRGKAAASKA--KKAKSRI--KRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLV 321
Query: 630 ---DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+N+ K Y G ++ + LS + G+ ++GPNGAGK+T + ++ G S
Sbjct: 322 LEFENVSKGYDGG-----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS 376
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
GT ++ +G Q + L + +L L Q V
Sbjct: 377 GT-------VKV---GETVKIGYFDQH---RDELDPDKTVLEE--LSEGFPDGDEQEVRA 421
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L F G +K G SGG K RL +A L+ P +
Sbjct: 422 YLGRF-GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL 460
|
Length = 530 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YPG PE + GL+ A GE +LG NGAGK+T + + G+ R SG + G
Sbjct: 1 YPGG---PE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP 55
Query: 696 I---RTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
+ R + +G+ Q +D L+ + + F L + + V E+L +
Sbjct: 56 LDYSRKGLLERRQRVGLVFQDPDDQLFAADVD-QDVAFGPLNLGLSEAEVERRVREALTA 114
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V + ++ SGG K+R+++A ++ P V
Sbjct: 115 VGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDV 148
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 45/159 (28%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL Y GR ++ LSL++ +GE G+LGPNGAGK+T + + G+ + +SG
Sbjct: 3 ENLSVGYGGR------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56
Query: 690 YVQGLDIRTDMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 747
+ G D+ + + + + PQ +
Sbjct: 57 LLDGKDLAS-LSPKELARKIAYVPQ----------------------------------A 81
Query: 748 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ + L H +AD+ + SGG ++R+ +A +L P +
Sbjct: 82 LELLGLAH--LADRPFNELSGGERQRVLLARALAQEPPI 118
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL K+YP K A+ ++L + GE ++GP+GAGK+T + + + +SG+
Sbjct: 5 ENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 690 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKG------ 737
++G DI + ++ +G+ Q L E LT E++L G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 738 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ +L+ V L A ++A + SGG ++R+++A +L P + L
Sbjct: 120 EEDKERALSALERVGLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLIL 168
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 19/157 (12%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AVN ++L + E ++GPNGAGKTT + + G + T GT ++G I
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
Query: 707 MGVCP--QEDLLWETLTGREHLLF--YGRLKN------LKGPALTQAVEES-------LK 749
MGV Q L+ +T E+LL + +LK LK PA +A E+ L+
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V L A++QAG + G +RRL +A ++ P++
Sbjct: 140 RVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
|
Length = 255 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 30/168 (17%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
YP R P+ + GLSL +P G+ ++G +G GK+T +S+ + R TSG +
Sbjct: 10 YPSR---PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSL---LERFYDPTSGEILLD 63
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 751
G+DIR ++ + + +G+ QE +L++ T E++ YG K A + VEE+ K
Sbjct: 64 GVDIRDLNLRWLRSQIGLVSQEPVLFDG-TIAENIR-YG-----KPDATDEEVEEAAKKA 116
Query: 752 N-------LFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
N L G D G+ SGG K+R+++A +L+ NPK+ L
Sbjct: 117 NIHDFIMSLPDGY--DTLVGERGSQLSGGQKQRIAIARALLRNPKILL 162
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 627 IISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
I +NL IY +G P EK A++ +++ + GE G++G G+GK+T I + G+ + T
Sbjct: 3 IKIENLTHIY--MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT 60
Query: 686 SGTAYVQGLDI---RTDMDRIYTSMGVC---PQEDLLWETLTGREHLLFYGRLKNLKGPA 739
SG + G+DI + + I +G+ P+ L ET+ + + F L
Sbjct: 61 SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI--EKDIAFGPINLGLSEEE 118
Query: 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ V+ ++ V L + DK + SGG KRR+++A + PK+
Sbjct: 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165
|
Length = 287 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM---MIGIT--RTTSGTAYVQGLDIRT 698
+K A+ +SL +P GE ++GP+G GK+T + + + + G + G DI
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 699 DMDRIY---TSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNL 753
+ +G+ Q+ + ++ +++ + RL +K L + VEE+L+ L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFPGSI--YDNVAYGLRLHGIKLKEELDERVEEALRKAAL 129
Query: 754 FHGGVADKQAGKY-SGGMKRRLSVAISLIGNPKVRL 788
+ V D+ SGG ++RL +A +L P+V L
Sbjct: 130 W-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLL 164
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 2e-11
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K++P G A+N +SL +P+GE FG++G +GAGK+T I + + R TSG
Sbjct: 6 NISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
Query: 691 VQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
V G D+ ++ + +G+ Q L + T +++ L + V E
Sbjct: 64 VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTE 123
Query: 747 SLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRLS 789
L+ V G++DK A +Y SGG K+R+++A +L NPKV L
Sbjct: 124 LLELV-----GLSDK-ADRYPAQLSGGQKQRVAIARALASNPKVLLC 164
|
Length = 343 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 37/177 (20%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ YP N E A++ +SL + +GE ++G G+GK+T + ++ G+ + TSG+
Sbjct: 6 RNVSFSYP----NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 690 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVE 745
+ G DIR D + ++G PQ+ LFYG L+ L P E
Sbjct: 62 LLDGTDIRQLDPADLRRNIGYVPQDV-----------TLFYGTLRDNITLGAPLADD--E 108
Query: 746 ESLKSVNLFHGGVA----------DKQAGK----YSGGMKRRLSVAISLIGNPKVRL 788
L++ L GV D Q G+ SGG ++ +++A +L+ +P + L
Sbjct: 109 RILRAAEL--AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-11
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
I + + YP R P++ A++GL+L + GE ++GP+GAGK+T +++
Sbjct: 337 EIEFEQVNFAYPAR---PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393
Query: 686 SGTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
SG + G+D+R D + M + PQ+ +L+ + YGR A + V
Sbjct: 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA--ASVMENIRYGRPD-----ATDEEV 446
Query: 745 EESLKSVNL--FHGGVAD-------KQAGKYSGGMKRRLSVAISLIGNPKVRL 788
E + ++ + F + + ++ SGG ++R+++A +++ + + L
Sbjct: 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL 499
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+V +GLS L +GE + GPNG+GKTT + ++ G+ +GT + G DI D +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDV 71
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+ + + LT E+L F+ G + +L++V L +A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFW---AAFLGGEEL-DIAAALEAVGL--APLAHLPF 125
Query: 764 GKYSGGMKRRLSVA 777
G S G KRR+++A
Sbjct: 126 GYLSAGQKRRVALA 139
|
Length = 207 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 6e-11
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 45/161 (27%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I N+ YPGR K + +SL + GE ++GP+G+GK+T + +++ + TS
Sbjct: 1 IEFKNVSFSYPGRP----KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 687 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
G + G+D+R D++ + ++ PQ+ L+ T RE++L
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENIL------------------ 97
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ +P +
Sbjct: 98 ---------------------SGGQRQRIAIARALLRDPPI 117
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTS 706
+ G++L + GE ++G +G GK+T ++++ G+ + TSG ++G I DR
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDR---- 56
Query: 707 MGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
M V LL W T+ L L +L VEE + V L ADK+ G+
Sbjct: 57 MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEA--ADKRPGQ 114
Query: 766 YSGGMKRRLSVAISLIGNPKVRL 788
SGGMK+R+++A +L PKV L
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLL 137
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +N+ K Y KV ++ +SL +P G ++GPNGAGK+T +SMM + + S
Sbjct: 2 ITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS 55
Query: 687 GTAYVQGLDI-RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT---- 741
G + GL++ T + + + QE+ + LT R+ L+ +GR +G LT
Sbjct: 56 GEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD-LVGFGRFPYSQG-RLTKEDR 113
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780
+ + E+++ ++L ++D+ + SGG ++R +A+ L
Sbjct: 114 RIINEAIEYLHL--EDLSDRYLDELSGGQRQRAFIAMVL 150
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 30/156 (19%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRI 703
+ G+SL +P GE +LG NG GKTT + ++G+ SG+ + G DI T + +R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI-TKLPPHERA 73
Query: 704 YTSMGVCPQEDLLWETLTGREHLL--FYGRLKNLKG---------PALTQAVEESLKSVN 752
+ PQ ++ LT E+LL + + P L +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE---------- 123
Query: 753 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ ++ G SGG +++L++A +L+ PK+ L
Sbjct: 124 -----MLGRRGGDLSGGQQQQLAIARALVTRPKLLL 154
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 696
V VN +SL + GE F ++G +G+GK+T + + + TSG + G DI
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 697 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNL 753
R + ++ S + P +L G E ++ + + E+L+ V L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLE-------VQGVPRAEREERAAEALELVGL 150
Query: 754 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
G K + SGGM++R+ +A +L +P + L
Sbjct: 151 --EGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707
++ LSL L +GE + G NGAGKTT ++ G+ + +SG+ + G I+ R S+
Sbjct: 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR--KSI 73
Query: 708 GVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
G Q+ L+ E LL LK L A + E LK ++L+ + ++
Sbjct: 74 GYVMQDVDYQLFTDSVREELLL---GLKEL--DAGNEQAETVLKDLDLY--ALKERHPLS 126
Query: 766 YSGGMKRRLSVAISLIGNPKV 786
SGG K+RL++A +L+ +
Sbjct: 127 LSGGQKQRLAIAAALLSGKDL 147
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 39/183 (21%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RT 684
NL +P G AV+G+S L GE G++G +G+GK+ ++G+ R
Sbjct: 5 KNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 685 TSGTAYVQGLDI----RTDMDRIY-TSMGVCPQE------------DLLWETLTGREHLL 727
G G D+ ++ +I + + Q+ D + E L R H
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--RLH-- 118
Query: 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGN 783
K A +A+E L+ V + +++ Y SGGM++R+ +A++L N
Sbjct: 119 ---GKGLSKKEAKERAIE-LLELVGI---PDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 784 PKV 786
PK+
Sbjct: 172 PKL 174
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI----TRTT 685
+NL + G AV +S + GE G++G +G+GK+T ++G+ R T
Sbjct: 9 ENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 686 SGTAYVQGLDI----RTDMDRIY-TSMGVCPQE--DLLWETLTGREHL--LFYGRLKNLK 736
SG + G D+ +M ++ + + Q+ L +T + + K +
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
A +AVE L+ V L D+ + SGGM++R+ +A++L PK+
Sbjct: 127 AEARKRAVE-LLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL 175
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDM 700
+ + G+ L + GE ++GP+G+GK+T + + + SGT + GL + + ++
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE---ESLKSVNLFHGG 757
+ + +G+ Q+ L+ LT E++ +KG + +A E E L+ V L
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITL--APIKVKGMSKAEAEERALELLEKVGLAD-- 127
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
AD + SGG ++R+++A +L NPKV L
Sbjct: 128 KADAYPAQLSGGQQQRVAIARALAMNPKVML 158
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 622 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681
G I D+LR Y ++ LSL + +GE ++G +G GKTT + + G
Sbjct: 1 GACGGIRIDHLRVAYGAN------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54
Query: 682 TRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739
+ +G + D+ T + + Q L+ L +++ F R + +
Sbjct: 55 VKAAGLTGRIAIADRDL-THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD 113
Query: 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + V ++LK V L G A + SGGM++R+++A ++ P V L
Sbjct: 114 IAERVADALKLVGL--GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702
AV +S +P GE G LG NGAGK+T + M+ G+ TSG V G D +
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98
Query: 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
I MG Q LW L + L + + + ++ + ++L G
Sbjct: 99 IGLVMGQKLQ---LWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDL--EGFLKWP 153
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
K S G + R +A +L+ PKV
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKV 177
|
Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-10
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+ K + G A++G+SL + GE +LG NGAGK+T + ++ G+ SG
Sbjct: 13 GISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 691 VQG--LDIRTDMDRIYTSMGVCPQEDLLWETLT-------GREHLLFYGRLKNLKGPALT 741
+ G + + D + + QE L L+ GRE +G + A+
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR---KAMR 123
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ E L + L D G S ++ + +A +L + +V
Sbjct: 124 RRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFDARV 166
|
Length = 500 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-10
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 602 MEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECF 661
M+ P ER + L P I N+ YPG+ E A++ +SL + GE
Sbjct: 442 MQLP---VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKV 494
Query: 662 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETL 720
++G G+GK+T + +++G+ + T G+ + G+DIR D + ++G PQ
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-------- 546
Query: 721 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA----------DKQAGK-- 765
+ LFYG L++ L P EE L++ L GV D Q G+
Sbjct: 547 ---DPRLFYGTLRDNIALGAPYADD--EEILRAAEL--AGVTEFVRRHPDGLDMQIGERG 599
Query: 766 --YSGGMKRRLSVAISLIGNPKVRL 788
SGG ++ +++A +L+ +P + L
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILL 624
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 29/174 (16%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL K Y ++G + + G+SL++ GE ++G +G+GK+T + ++ G+ TSG
Sbjct: 5 ENLGKRY--QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62
Query: 690 YVQGLDIRT--DMDRIY---TSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALT-- 741
G + +R +G Q HLL + L+N+ P L
Sbjct: 63 LFNGQSLSKLSSNERAKLRNKKLGFIYQ----------FHHLLPDFTALENVAMPLLIGK 112
Query: 742 QAVEES-------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
++V+E+ L+ V L H + + + SGG ++R+++A +L+ P + L
Sbjct: 113 KSVKEAKERAYEMLEKVGLEHR--INHRPSELSGGERQRVAIARALVNQPSLVL 164
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 614 VEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTT 673
++L +P + ++ LR I DG K ++ L L + +GE +LGP+G GKTT
Sbjct: 1 SKKLNKQPSSLSPLVE--LRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTT 55
Query: 674 FISMMIGITRTTSGTAYVQGLDI------RTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727
+ ++ G SG + G DI ++ ++ S + P +T E++
Sbjct: 56 VLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPH-------MTVFENVA 108
Query: 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787
F R++ +T V E+L+ V L A ++ + SGG ++R+++A +++ PKV
Sbjct: 109 FGLRMQKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166
Query: 788 L---SLSS 792
L SLS+
Sbjct: 167 LLDESLSA 174
|
Length = 375 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMDR 702
A+N +SL +P+G+ +G++G +GAGK+T I + + R TSG+ V G D+ T ++ +
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+G+ Q L + T ++ L N + + V E L V L G D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL--GDKHDSY 137
Query: 763 AGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG K+R+++A +L NPKV L
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLL 163
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 7/171 (4%)
Query: 346 DVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCIS 405
+ + L ++L +I ++V EK+ +++ + + G+ Y L +
Sbjct: 92 GYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVG 151
Query: 406 SIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGY 465
I +L ++ + GL + + + +++Y IAL L+ +LF N + A ++
Sbjct: 152 LIQLLIILLL--LFGL-GIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILV-- 206
Query: 466 ICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSF 516
I + L G F + + +WI + + P FA GL
Sbjct: 207 ISILILLLSGFFGGLFPLPNMPSFLQWIFS--IIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
K +N LSL+LP+G+ ++GPNG GK+T + + SGT ++ I R
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 704 YT-SMGVCPQEDLLWETLTGRE--------HLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
+ + PQ L E +T RE L +GRL V ++++ +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL----SAEDNARVNQAMEQTRIN 129
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISL 780
H +AD++ SGG ++R +A+ L
Sbjct: 130 H--LADRRLTDLSGGQRQRAFLAMVL 153
|
Length = 255 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI- 703
K VN LA+ GE F ++G +G+GK+T + M+ + T+G ++ G +I +
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPVE 64
Query: 704 -----YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
+G+ Q+ L+ +T ++ L + E LK V L
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL--EEY 122
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + SGGM++R+ +A +L P + L
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILL 152
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 9e-10
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 688
+L Y G+ + A+ +SL + SGE +LGP+G GKTT ++++ G + G+
Sbjct: 6 VSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 689 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+ G I GV Q + L L +++ F +L+ ++ + + L
Sbjct: 62 IQLNGRRIEGPGAE----RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117
Query: 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G K + SGGM++R+ +A +L P++ L
Sbjct: 118 ALVGL--EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
|
Length = 259 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 632 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691
LR + G G P ++G+SL LP GE +LGP+G+GK+T ++ + G+ G +
Sbjct: 337 LRDLSAGYPGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTL 394
Query: 692 QGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
G+ + + D D + + VC Q+ L++T T RE+L R A + + +L+
Sbjct: 395 DGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRL-AR-----PDATDEELWAALER 447
Query: 751 VNL------FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G+ + SGG ++RL++A +L+ + + L
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 494
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 42/157 (26%), Positives = 84/157 (53%), Gaps = 21/157 (13%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700
+P + + +S +P+G+ ++GP+G+GK+T + ++ +SG+ + G DIR +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 701 DRIYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 759
D + ++GV PQ+ +L+ +T+ + + YGR A + V E+ K+ + H +
Sbjct: 71 DSLRRAIGVVPQDTVLFNDTI---GYNIRYGRPD-----ATDEEVIEAAKAAQI-HDKIM 121
Query: 760 ------DKQAG----KYSGGMKRRLSVAISLIGNPKV 786
D G K SGG K+R+++A +++ NP +
Sbjct: 122 RFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---LDIRTDMD------RIYTSM 707
+ E G+ G +GAGK+T + + G+ + GT + G D R ++ +I
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI---- 77
Query: 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767
G+ Q+ L+ L RE+L F LK + +V+E L + L H + ++ + S
Sbjct: 78 GLVFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDH--LLNRYPAQLS 133
Query: 768 GGMKRRLSVAISLIGNPKVRL 788
GG K+R+++A +L P++ L
Sbjct: 134 GGEKQRVALARALAAQPELLL 154
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT-S 706
V+G+ + P G G+LGPNG+GK+T + ++ G R +GT + G+D+ R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 707 MGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLKSVNLFHGGVADK 761
+ + Q+ LT R+ + GR L P V+ +L L H +AD+
Sbjct: 77 VALVEQDSDTAVPLTVRDVVAL-GRIPHRSLWAGDSPHDAAVVDRALARTELSH--LADR 133
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+ VA +L PK+ L
Sbjct: 134 DMSTLSGGERQRVHVARALAQEPKLLL 160
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
NL K + DG AV+ +SL + GE F +LG +G GK+T + M+ G + T+G
Sbjct: 24 NLTKSF---DGQH---AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
+ G+D+ + + + + Q L+ +T +++ F + L + V E L
Sbjct: 78 LDGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL 136
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V++ A ++ + SGG ++R+++A SL PK+ L
Sbjct: 137 VHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172
|
Length = 377 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 16/190 (8%)
Query: 607 VTQERERVEQLLLEPGTSHA--IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGML 664
V R + A + + YPGR A+ +S +P GE ++
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRR-----PALRPVSFTVPPGERVALV 354
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGR 723
GP+GAGK+T +++++G T G+ V G+ + D D + PQ L+ T
Sbjct: 355 GPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIA 413
Query: 724 EHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778
E++ + + +A+E E + ++ + SGG +RL++A
Sbjct: 414 ENIRLA--RPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALAR 471
Query: 779 SLIGNPKVRL 788
+ + + + L
Sbjct: 472 AFLRDAPLLL 481
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+L+ YP DG A+ G++ GE +LGPNGAGK+T GI + TSG
Sbjct: 6 DLKYSYP--DGT---EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 691 VQGLDIRTD---MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA--LTQA 743
++G I+ D + + ++G+ Q +D L+ T E + F G L NL + +
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAF-GPL-NLGLSKEEVEKR 117
Query: 744 VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V+E+LK+V + G +K SGG K+R+++A L P++
Sbjct: 118 VKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158
|
Length = 275 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+ K + G A++G+SL++ GE +LG NGAGK+T + ++ G+ + SG
Sbjct: 5 GITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 691 VQG 693
V G
Sbjct: 59 VDG 61
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 595 DSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLA 654
K+F +E P T ++ EP I +NL YP DG K A++ L+L
Sbjct: 291 ADKLFTLLESPVATPGSGEKAEVANEPPIE--ISLENLSFRYP--DG---KPALSDLNLT 343
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE 713
+ +G+ ++G +GAGK+T +++++G T G V G+D+R + + Q
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 714 DLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNL---------FHGGVADKQA 763
L+ T RE++L P + + + +L L + + A
Sbjct: 404 PYLFAG-TIRENILLA-------RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGA 455
Query: 764 GKYSGGMKRRLSVAISLIGNPKVRL 788
G SGG +RL++A +L+ + L
Sbjct: 456 G-LSGGQAQRLALARALLSPASLLL 479
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
D E+E + L+ P I +N+ Y D + LSL +P GE ++G
Sbjct: 451 DTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD----PPVLEDLSLEIPPGEKVAIVG 506
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGVCPQEDLLW-----ET 719
+G+GK+T + +++G+ + G + G+D+ D+ + +G Q+ L+ E
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566
Query: 720 LT-GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778
+ G ++ + L A E + V + A SGG ++RL++A
Sbjct: 567 IALGNPEATDEEIIEAAQ---LAGAHEFIENLPMGYDTPVGEGGAN-LSGGQRQRLALAR 622
Query: 779 SLIGNPKV 786
+L+ PK+
Sbjct: 623 ALLSKPKI 630
|
Length = 709 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----------- 696
+ +SL++ GE G+LG +G GK+T +++G+ + GT +G D+
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 697 RTDMDRIYTSM--GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
R D+ ++ V P+ + HL +L + E L V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT------SLDESEQKARIAELLDMVGL- 139
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
ADK + SGG +R+++A +L PK+
Sbjct: 140 RSEDADKLPRQLSGGQLQRINIARALAVKPKL 171
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 6e-09
Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 33/182 (18%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +NL Y R + +SL L GE G++G NGAGK+T + ++ G S
Sbjct: 4 ITLENLSLAYGDR------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 687 GT---------AYV----QGLDIRTDMDRIYTSMGVCPQEDLLWE---------TLTGRE 724
G Y+ +T +D Y G +LL E
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLD--YVIEGFGELRELLAELEEAYALLADPDDEL 115
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
L+ L G L EE+L + D+ SGG +RR+++A +L+ P
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGF---PDEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 785 KV 786
+
Sbjct: 173 DL 174
|
Length = 530 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
+ I ++L Y +DG A+ GLSL++P G +LGPNGAGK+T + + GI
Sbjct: 3 NIIEVEDLHFRY--KDGTK---ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP 57
Query: 685 TSGTAYVQGLDIRTDMDR-IYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALT 741
G V G ++ + ++ + + +G+ Q +D ++ + T + + F L +
Sbjct: 58 QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVE 116
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ VEE+LK+V ++ DK S G K+R+++A L +P V
Sbjct: 117 RRVEEALKAVRMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159
|
Length = 274 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 701
+ +K + ++ ++ GE ++GP GAGKTT I++++ G + G+DIR D+
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DIS 71
Query: 702 RIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---- 755
R + +GV Q+ L+ T E++ GR + V E+ K
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIR-LGRPNATD-----EEVIEAAKEAGAHDFIMK 124
Query: 756 --GG---VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G V + G S G ++ L++A +++ +PK+
Sbjct: 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-09
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 688
D L+ ++ A+N +S +P GE G++G NG+GK+T +++ G+T GT
Sbjct: 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80
Query: 689 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+DI+ I S G+ Q LTG E++ G + L + + + E +
Sbjct: 81 -----VDIKGSAALIAISSGLNGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEII 128
Query: 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ ++ G + YS GMK RL AIS+ NP +
Sbjct: 129 EFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164
|
Length = 549 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705
++ L+L + G +LGP+G GKTT + ++ G+ + T G ++ G D+ R
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV---THRSIQ 76
Query: 706 SMGVCP--QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+C Q L+ ++ E++ + ++ + Q V+E+L+ V+L G D+
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL--AGFEDRYV 134
Query: 764 GKYSGGMKRRLSVAISLIGNPKVRL 788
+ SGG ++R+++A +LI PKV L
Sbjct: 135 DQISGGQQQRVALARALILKPKVLL 159
|
Length = 351 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700
+K + G+S +L +GE ++GP+G+GK+T +++GI TSG+ + G D++ D
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHG 756
+ +G PQ+ L+ T E++ +G K ++ L E L+ + +
Sbjct: 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT 446
Query: 757 GVADKQAGKYSGGMKRRLSVAISLIGNPK 785
+ A SGG ++R+++A +L G+PK
Sbjct: 447 VIGPGGAT-LSGGQRQRIALARALYGDPK 474
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A+ +SL++ GE +LGP+G GKTT + ++ G+ R T+GT Y G DI T +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI-TRLPPQKRD 77
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA--LTQAVEESLKSVNLFHGGVADKQAG 764
G+ Q L+ LT +++ YG LKN + + V E L V L G K G
Sbjct: 78 YGIVFQSYALFPNLTVADNIA-YG-LKNRGMGRAEVAERVAELLDLVGL--PGSERKYPG 133
Query: 765 KYSGGMKRRLSVAISLIGNPKVRL 788
+ SGG ++R+++A +L +P + L
Sbjct: 134 QLSGGQQQRVALARALATSPGLLL 157
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 27/158 (17%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 696
V VN SL + GE F ++G +G+GK+T + ++ + T G V G DI
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 697 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA---VEESLKS 750
R + ++ S + P +L G E ++G + E+L+
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLE----------VQGVPKAEREERALEALEL 151
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L G ADK + SGGM++R+ +A +L +P + L
Sbjct: 152 VGL--EGYADKYPNELSGGMQQRVGLARALANDPDILL 187
|
Length = 386 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIYTS 706
++G+ L++ G G++GPNGAGKTT + + G T+GT V G D+
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 707 MGVCPQEDLLWETLTGRE--------HLLFYGRLKNLKGPALTQAVEESLK--SVNLFHG 756
+ PQ+ L R+ H R AVE +++ V F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHR---SRFDTW-TETDRAAVERAMERTGVAQF-- 132
Query: 757 GVADKQAGKYSGGMKRRLSVAISL 780
AD+ SGG ++R+ +A +L
Sbjct: 133 --ADRPVTSLSGGERQRVLLARAL 154
|
Length = 402 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 630 DNLRKIYPG---RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
L Y + + +N +SL+L SGE +LG +G GK+T +++G+ +
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 687 GTAYVQGLDI-----------RTDMDRIYT-SMG-VCPQEDLLWETLTGREHLLFYGRLK 733
G +G + R D+ ++ S+ V P++ + HLL
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL------ 120
Query: 734 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
+L E L++V+L V DK+ + SGG +R+ +A +L PK
Sbjct: 121 SLDKAERLARASEMLRAVDL-DDSVLDKRPPQLSGGQLQRVCLARALAVEPK 171
|
Length = 268 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 31/166 (18%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
YPG DG P + +SL +P+GE ++GP+G+GK+T +++ I R SG +
Sbjct: 10 YPG-DGPP---VLRDISLDIPAGETVALVGPSGSGKSTLVNL---IPRFYDVDSGRILID 62
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 750
G D+R + + +G+ Q+ L+ T E++ YGR P T+ VEE+ ++
Sbjct: 63 GHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIA-YGR------PGATREEVEEAARA 114
Query: 751 VNL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
N + + ++ K SGG ++R+++A +L+ +P +
Sbjct: 115 ANAHEFIMELPEGYDTVIGER-GVKLSGGQRQRIAIARALLKDPPI 159
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 631 NLRKI-YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N K + G EK A+NGLSL + G+ ++G NGAGK+T ++ + G + TSG
Sbjct: 6 NATKTFFKGTP--LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
Query: 690 YVQGLDI-------RTDM-DRIYTS--MGVCP----QEDL-LWETLTGREHLLFYGRLKN 734
+ G+D+ R ++ R++ G P +E+L L E+ + L
Sbjct: 64 LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA----- 118
Query: 735 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ E L + L + G SGG ++ LS+ ++ + PK+ L
Sbjct: 119 -LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL 171
|
Length = 263 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 48/171 (28%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSGT------ 688
K + +S GE ++G +GAGKTT ++ + + +G
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 689 -----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPAL 740
AYVQ Q+DL TLT REHL+F L+ +
Sbjct: 97 MRAISAYVQ-------------------QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK 137
Query: 741 TQAVEESLKSVNLFHG-----GVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ V+E L+++ L GV + G SGG ++RL+ A L+ +P +
Sbjct: 138 RERVDEVLQALGLRKCANTRIGVPGRVKG-LSGGERKRLAFASELLTDPPL 187
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 35/214 (16%)
Query: 592 GRQDSKVFVSMEK-PDVTQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVN 649
G D V V ME +V +E E VE II N+ K Y D K AV+
Sbjct: 251 GTPDEVVAVFMEGVSEVEKECE-VEV-------GEPIIKVRNVSKRYISVDRGVVK-AVD 301
Query: 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-------- 701
+SL + GE FG++G +GAGKTT ++ G+ TSG V+ D DM
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 702 RIYTSMGVCPQEDLLW------ETLTGREHLLFYGRLKNLKGPALTQAV---EESLKSVN 752
R +G+ QE L+ + LT L L +K + V EE +
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE-- 419
Query: 753 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ DK + S G + R+++A LI P++
Sbjct: 420 -----ILDKYPDELSEGERHRVALAQVLIKEPRI 448
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-08
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+ K +PG VA + +SL++ GE +LG NGAGK+T + ++ G+ + SG
Sbjct: 9 GITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 691 VQG 693
V G
Sbjct: 63 VDG 65
|
Length = 501 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-08
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIR 697
P + ++ + GE ++GP+G GK+T +S MIG +G ++ +
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 698 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
+ +G+ Q+ LL+ L+ ++LLF LKG A A +L+ L G
Sbjct: 71 M-LPAAQRQIGILFQDALLFPHLSVGQNLLF-ALPATLKGNARRNAANAALERSGL--DG 126
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ SGG + R+++ +L+ PK L
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALL 157
|
Length = 213 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT--- 705
N +SL +PSG+ +LGP+G+GKTT + ++ G+ TSG G TD+ R++
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG----TDVSRLHARDR 74
Query: 706 SMGVCPQEDLLWETLTGREHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761
+G Q L+ +T +++ F R + A+ V + L+ V L H +AD+
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH--LADR 132
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ SGG K+R+++A +L P++ L
Sbjct: 133 YPAQLSGGQKQRVALARALAVEPQILL 159
|
Length = 353 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 683
+ I N+ Y + + EK+A++ ++L + GE +LG NG+GK+T M +
Sbjct: 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61
Query: 684 TTSGTAYVQGLDIRTDMD--RIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA 739
+ G YV GLD + + I G+ Q ++ + T+ E + +G +NL P
Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV--EEDVAFGP-ENLGIPP 118
Query: 740 --LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
+ + V+ESLK V ++ SGG K+R+++A L P+
Sbjct: 119 EEIRERVDESLKKVGMYE--YRRHAPHLLSGGQKQRVAIAGILAMRPE 164
|
Length = 280 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS---- 706
LP + G +G+GKTT I ++ G+TR G + G + I+
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 707 -MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
+G QE L+ L+ R +L YG + P+ + E + + L G + + G+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRAR--PSERRISFERVIEL-LGIGHLLGRLPGR 131
Query: 766 YSGGMKRRLSVAISLIGNPKVRL 788
SGG K+R+++ +L+ +P++ L
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLL 154
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY-TS 706
+N +SL++ +GE + GP+G GK+T + ++ + TSGT +G D+ T Y
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 707 MGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
+ C Q L +T+ ++L+F +++N + P A++ L L + K +
Sbjct: 79 VSYCAQTPALFGDTV--EDNLIFPWQIRNRR-PDRAAALDL-LARFALPD-SILTKNITE 133
Query: 766 YSGGMKRRLSVAISLIGNPKVRL 788
SGG K+R+++ +L PK+ L
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILL 156
|
Length = 223 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
++ ++ +SL L G+ +LGPNGAGK+T + +++G+ G R RI
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI------KRNGKLRI 69
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
G PQ+ L TL L R L+ + + +LK V H + D
Sbjct: 70 ----GYVPQKLYLDTTLP-----LTVNRFLRLRPGTKKEDILPALKRVQAGH--LIDAPM 118
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
K SGG +R+ +A +L+ P++
Sbjct: 119 QKLSGGETQRVLLARALLNRPQL 141
|
Length = 251 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---- 696
G+ K + ++L + GE + GP+G+GKTT ++++ G+ G+ V G ++
Sbjct: 14 GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS 73
Query: 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH 755
++ ++ ++G Q L LT R+++ L+ NL + L++V L
Sbjct: 74 EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGL-- 131
Query: 756 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
G D SGG K+R+++A +L+ PK+ L
Sbjct: 132 GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL 164
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM------MIGITRTTSGTAYVQGLDIR 697
+K A+ ++L +P + ++GP+G GK+T + +I R G + G +I
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE-GEVLLDGKNIY 77
Query: 698 T-DMD----RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN 752
+D R M V + + ++ +++ + RL +K L + VE SLK
Sbjct: 78 DPKVDVVELRRRVGM-VFQKPNPF--PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA 134
Query: 753 LFHGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVRL 788
L+ V D K A SGG ++RL +A +L P+V L
Sbjct: 135 LW-DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL 172
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 35/126 (27%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722
+LGP+G GKTT + ++ G + SG+ + G D+ T++ + + Q L+ +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYALFPHMTV 59
Query: 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782
E++ F +++ + + V E+L+ V L AD++ + SGG ++R+++A +L+
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQL--EEFADRKPHQLSGGQQQRVALARALVF 117
Query: 783 NPKVRL 788
PK+ L
Sbjct: 118 KPKILL 123
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 609 QERERVEQLLLE----------PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSG 658
Q +R+ +LL E P A+ + L PG+ +K + G+S AL +G
Sbjct: 307 QSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQ----KKPILKGISFALQAG 362
Query: 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE 713
E G++GP+G+GK+T +++GI TSG+ + G D+R D +++ +G PQ+
Sbjct: 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD 418
|
Length = 580 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMDRI 703
++G+SL L GE +LGPNGAGK+T + + G SG + G+ + + ++ R
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR- 75
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG---PALTQAVEESLKSVNLFHGGVAD 760
V PQ L T +E + GR+ + G + ++L + +L +A
Sbjct: 76 --HRAVLPQNSSLAFPFTVQEVVQM-GRIPHRSGREPEEDERIAAQALAATDLSG--LAG 130
Query: 761 KQAGKYSGGMKRRLSVA 777
+ SGG ++R+ +A
Sbjct: 131 RDYRTLSGGEQQRVQLA 147
|
Length = 259 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K + KV ++ L+L + G+ + ++G +G+GK+T ++++ + + SG Y
Sbjct: 3 NISKKFGD------KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56
Query: 691 VQGLDIRTDMDR-----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
+ G + + +G Q L E T E+L + K L + +
Sbjct: 57 LNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK 116
Query: 746 ESLKSVNLFHGGVADKQAGK---YSGGMKRRLSVAISLIGNPKVRL 788
E+L+ V L K K SGG ++R+++A +++ P + L
Sbjct: 117 EALEKVGLNL-----KLKQKIYELSGGEQQRVALARAILKPPPLIL 157
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 623 TSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681
+ II +L K G E + G+ L + GE ++GP+G+GK+T ++++ G+
Sbjct: 2 PAENIIEVHHLSKTVG--QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59
Query: 682 TRTTSGTAYVQGLDI-RTDMDRIYT----SMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736
+SG + G + + D D +G Q L LT E++ L+
Sbjct: 60 DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES 119
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ L++V L G + SGG ++R+++A + G P V
Sbjct: 120 SADSRAGAKALLEAVGL--GKRLTHYPAQLSGGEQQRVALARAFAGRPDV 167
|
Length = 228 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RTDMDRIY 704
+ G+SL++ GE ++GP+G+GK+T + + G+ SG+ V G D+ + D+ ++
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764
+G+ Q+ L+ LT E++ +K + +A E++L+ L G+ADK A
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTL--APVKVKKLSKAEAREKALE--LLEKVGLADK-AD 131
Query: 765 KY----SGGMKRRLSVAI--SLIGNPKVRL 788
Y SGG ++R VAI +L +PKV L
Sbjct: 132 AYPAQLSGGQQQR--VAIARALAMDPKVML 159
|
Length = 240 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YP R P+ + GL+ L GE ++GP+G+GK+T +++ + + T G + G+
Sbjct: 488 YPNR---PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544
Query: 696 IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV---- 751
+ D Y V L G+E +LF G ++ LT +E + +
Sbjct: 545 LV-QYDHHYLHRQV---------ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAA 594
Query: 752 -------NLFHG--GVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+G ++ + SGG K+R+++A +L+ P+V
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703
K + +S+ G + ++GP+GAGK+T I ++ + T G+ + G+DI+T D+ +
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+G+ Q+ L+E T ++++ + LK K VE L V L + A +
Sbjct: 76 RRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKN----VDVEYYLSIVGL-NKEYATRDV 129
Query: 764 GKYSGGMKRRLSVAISLIGNPKVRL 788
SGG +R+S+A +L NP+V L
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLL 154
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YP R P+ + + +S L GE ++GP+G+GK+T ++++ + G + G
Sbjct: 21 YPTR---PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 696 IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS----- 750
I + + Y V +L G+E +LF L++ L E +K
Sbjct: 78 I-SQYEHKYLHSKV---------SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 751 -----VNLFHGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
++ G ++ + SGG K+R+++A +LI NP+V
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV 171
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 572 LYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKP----DVTQER-ERVEQLLLEPGTSHA 626
L NF S R+ MEK DV E + + L P A
Sbjct: 212 LSIPLNFLGFSYREIRQ---------ALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGA 262
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ N+ Y +P + +NG+S +P G+ ++G +GAGK+T + ++ S
Sbjct: 263 VAFINVSFAY-----DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 687 GTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
G+ + G DIR + ++G+ PQ+ +L+ + + YGR P T E
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--NDTIAYNIKYGR------PDATA--E 367
Query: 746 ESLKSVNLFHGGVA--------DKQAG----KYSGGMKRRLSVAISLIGNPKV 786
E + D G K SGG K+R+++A +++ NP +
Sbjct: 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420
|
Length = 497 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 6e-07
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
ISD R+I E+ +NG++ GE +LGP+G+GK+T ++ + G + +
Sbjct: 71 ISDETRQI-------QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF 123
Query: 688 TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAV 744
T + + R +I G Q+D+L+ LT RE L+F L K+L
Sbjct: 124 TGTILANN-RKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVA 182
Query: 745 EESLKSVNLFHGG---VADKQAGKYSGGMKRRLSVAISLIGNP 784
E + + L + + SGG ++R+S+A ++ NP
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 225
|
Length = 659 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 41/185 (22%)
Query: 609 QERERVEQLLLEPGT---SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
Q+R ++ + PG I ++NL K + + + ++ LS LP G G++G
Sbjct: 302 QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK------LLIDDLSFKLPPGGIVGVIG 355
Query: 666 PNGAGKTTFISMMIGITRTTSGT---------AYVQGLDIRTDMDRIYTSMGVCPQEDLL 716
PNGAGK+T M+ G + SGT AYV R +D T +
Sbjct: 356 PNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD--QSRDALDPNKT----------V 403
Query: 717 WETLT-GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775
WE ++ G + + +L + P+ + N F G K+ G+ SGG + R+
Sbjct: 404 WEEISGGLDII----QLGKREVPS-----RAYVGRFN-FKGSDQQKKVGQLSGGERNRVH 453
Query: 776 VAISL 780
+A +L
Sbjct: 454 LAKTL 458
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697
+ ++ +SL L GE +LGPNGAGK+T + + G SG + G +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67
|
Length = 258 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 33/161 (20%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--------- 696
+ V SLA+ GE F ++G +G+GK+T + ++ + T G + G+DI
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 697 ---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-- 751
R + ++ S + P +L T G E L G + E++L ++
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGME----------LAGINAEERREKALDALRQ 151
Query: 752 ----NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
N H + SGGM++R+ +A +L NP + L
Sbjct: 152 VGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILL 187
|
Length = 400 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-06
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +NL K Y G+ + + +SL + G+ G++G NGAGK+T + ++ G
Sbjct: 1 IELENLSKTYGGK------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE 54
Query: 687 GT 688
G
Sbjct: 55 GI 56
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 46/204 (22%)
Query: 602 MEKPDVTQERERVEQLLLEPG-----------TSHAIISDNLRKIYPGRDGNPEKVAVNG 650
V R+ +L + T A+ N+ YP + A+
Sbjct: 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYP----GQQTKALKN 356
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 710
+L L GE +LG +G+GK+T + ++ G G+ + G++I
Sbjct: 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA------------S 404
Query: 711 PQEDLLWET---LTGREHLLFYGRLK-NL---KGPALTQAVEESLKSVNL---------- 753
E L ET LT R H LF G L+ NL A + + +L+ V L
Sbjct: 405 LDEQALRETISVLTQRVH-LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDG 463
Query: 754 FHGGVADKQAGKYSGGMKRRLSVA 777
+ + + SGG +RRL++A
Sbjct: 464 LNTWLGEGGRR-LSGGERRRLALA 486
|
Length = 573 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
Y G K A+ ++L L SGE +LGP+G GKTT ++++ G G+ + G
Sbjct: 11 YGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64
Query: 696 IR-TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
+ +R GV Q + L ++++ F +L ++ + + LK V L
Sbjct: 65 VEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL- 118
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
G + + SGG ++R+ +A +L NP++ L
Sbjct: 119 -EGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
Length = 255 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-06
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 609 QERERVEQLLLEPGT---SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
Q+R ++ + PG I ++NL K + R + ++ LS +LP G G++G
Sbjct: 304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR------LLIDDLSFSLPPGGIVGIIG 357
Query: 666 PNGAGKTTFISMMIGITRTTSGT---------AYV 691
PNGAGK+T M+ G + SGT AYV
Sbjct: 358 PNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYV 392
|
Length = 556 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 709
L +P+GE +LGP+GAGK+T ++++ G SG + G+D + SM
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77
Query: 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNLFHGGVADKQAGKYSG 768
QE+ L+ LT +++ G LK A + VE + V L G + G+ SG
Sbjct: 78 --QENNLFAHLTVAQNIGL-GLSPGLKLNAEQREKVEAAAAQVGL--AGFLKRLPGELSG 132
Query: 769 GMKRRLSVAISLI 781
G ++R+++A L+
Sbjct: 133 GQRQRVALARCLV 145
|
Length = 231 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 710
L GE ++GP+G+GK+T ++++ G SG + G+D+ T + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSML 75
Query: 711 PQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769
QE+ L+ LT +++ G LK QA+E +L V L G+ + G+ SGG
Sbjct: 76 FQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGL--AGLEKRLPGELSGG 132
Query: 770 MKRRLSVAISLI 781
++R+++A L+
Sbjct: 133 ERQRVALARVLV 144
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
H I + +L Y G K A+N ++ P ++GPNGAGK+T GI +
Sbjct: 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 685 TSGTAYVQGLDI-RTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALT 741
TSG+ ++G I + ++ + +G+ Q +D ++ T + + F L +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVA 115
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V +L + L + D+ SGG K+R+++A + P+V
Sbjct: 116 HRVSSALHMLGLEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
Length = 277 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ +SL + +GEC + GP+GAGK+T + + SG V+ D+ +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 16/158 (10%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM------IGITRTTSGTAYVQGLDI- 696
EK A+ ++L +P + ++GP+G GK+T + + + R G G DI
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE-GKVLFDGQDIY 71
Query: 697 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNL 753
+ D+ + +G+ Q+ + ++ +++ + RL +K L + VEESLK L
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL 130
Query: 754 FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ V D+ A SGG ++RL +A +L P+V L
Sbjct: 131 WD-EVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR 702
E A+ +S + GE +LG NG+GK+T ++ G+ + SG + G+ I + +
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE 80
Query: 703 IYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761
I +G+ Q D + T + + F K + + +++ K V + DK
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--EDYLDK 138
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKV 786
+ SGG K+R+++A L NP++
Sbjct: 139 EPQNLSGGQKQRVAIASVLALNPEI 163
|
Length = 271 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIY 704
A++G+ L + GEC G+ G NGAGK+T + ++ G+ T G Y G ++ R
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 705 TSMGVC--PQEDLLWETLTGREHLLFYGRLKNLKG-----PALTQAVEESLKSVNLFHGG 757
G+ QE L L+ E+ +F G L G A+ + L+ + L
Sbjct: 76 ERAGIVIIHQELTLVPELSVAEN-IFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V + G Y GG ++ + +A +L N + RL
Sbjct: 135 VT-RPVGDYGGGQQQLVEIAKAL--NKQARL 162
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+ + K+ P P+K + +SL+ G G+LG NGAGK+T + +M G+ + +G A
Sbjct: 8 NRVSKVVP-----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA 62
Query: 690 YVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
G+ + G PQE L T T RE
Sbjct: 63 RPAPGIKV-----------GYLPQEPQLDPTKTVRE 87
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR------TTSGTAYVQGLDI- 696
+K + +++ +P+ FG++GP+G+GK+T + ++ + G G DI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH 755
+ D ++ +G+ Q+ + L+ +++ + + +K + + VEE L+ V L+
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 756 GGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V D+ A + SGG ++RL++A +L PKV L
Sbjct: 142 -EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL 176
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 22/163 (13%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 702
E + G+SL +G+ ++G +G+GK+TF+ + + + + G+ V G I D+
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 703 -------------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ T + + Q LW +T E+++ ++ L G + +A E ++K
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVL-GLSKQEARERAVK 134
Query: 750 SVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
+ G+ ++ GKY SGG ++R+S+A +L P+V L
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175
|
Length = 257 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--LDIRTDMD-----RI 703
++L P GE +LGP+GAGK++ + ++ + SGT + G D +
Sbjct: 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADK 761
++G+ Q+ LW LT +E+L+ L K AL +A E+ LK + L AD+
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA-EKLLKRLRL--KPYADR 137
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L+ P+V L
Sbjct: 138 YPLHLSGGQQQRVAIARALMMEPQVLL 164
|
Length = 242 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 626 AIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
A + +RK Y G + G+ L + GE ++GP+G GK+T + M+ G+ R
Sbjct: 2 AGLKLQAVRKSYDG--KTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56
Query: 685 TSGTAYVQG 693
TSG ++ G
Sbjct: 57 TSGEIWIGG 65
|
Length = 356 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD--RIY 704
A++ +SL + GE ++G NGAGKTT + + G R TSG G DI TD +I
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQTAKIM 78
Query: 705 -TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ- 762
++ + P+ ++ +T E+L G A +E +K V + +++
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFF------AERDQFQERIKWVYELFPRLHERRI 132
Query: 763 --AGKYSGGMKRRLSVAISLIGNPKVRL 788
AG SGG ++ L++ +L+ P++ L
Sbjct: 133 QRAGTMSGGEQQMLAIGRALMSQPRLLL 160
|
Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 639 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698
R V ++ +SL + GE G++G +G+GK+T ++ +G V G D+
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--------ESLK 749
D + +GV QE++L+ + R+++ L + G ++ + +E + +
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNR-SIRDNI----ALAD-PGMSMERVIEAAKLAGAHDFIS 122
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + + +Q SGG ++R+++A +LI NP++
Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 630 DNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
++LR +P + G AV+G+SL L G+ G++G +G+GK+T ++ +
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP- 338
Query: 685 TSGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGR--------EHLLFYGRL 732
+ G G DI R +M + M V Q+ + +L+ R E L +
Sbjct: 339 SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHE-- 394
Query: 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L Q V E+L+ V L ++ ++SGG ++R+++A +LI P++
Sbjct: 395 PKLSAAERDQRVIEALEEVGL-DPATRNRYPHEFSGGQRQRIAIARALILKPEL 447
|
Length = 534 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 25/182 (13%)
Query: 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682
+A+ ++L K Y G E + G+SL +G+ ++G +G+GK+TF+ + +
Sbjct: 3 AENALEVEDLHKRY----GEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 56
Query: 683 RTTSGTAYVQGLDIRTDMD--------------RIYTSMGVCPQEDLLWETLTGREHLLF 728
+ ++G+ V G +IR D R+ T +G+ Q LW +T E+++
Sbjct: 57 KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE 116
Query: 729 YGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L K A+ +A E+ L V + AD SGG ++R+++A +L P+V
Sbjct: 117 APVHVLGVSKAEAIERA-EKYLAKVGIAEK--ADAYPAHLSGGQQQRVAIARALAMEPEV 173
Query: 787 RL 788
L
Sbjct: 174 ML 175
|
Length = 256 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 620 EPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679
I N+ G K + LS + GE + ++GPNGAGKTT +S++
Sbjct: 25 IEINEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT 78
Query: 680 GITRTTSGTAYVQGLDI-RTDMDR-IYTSMGVCP---QEDLLWETLTGREHLL--FY--- 729
G +SG + G + + + +G+ E T R+ +L F+
Sbjct: 79 GEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVVLSGFFASI 137
Query: 730 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G + A + L+ + H +AD+ G S G +RR+ +A +L+ +P++
Sbjct: 138 GIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRRVLIARALVKDPEL 192
|
Length = 257 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS--- 706
+SL +P G+ ++GP+G GKTT + ++ G G G +I R+YT
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 707 MGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
M + Q L+ + +++ + R L P L V L++V L G A +
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSE 143
Query: 766 YSGGMKRR--LSVAISL 780
SGGM RR L+ AI+L
Sbjct: 144 LSGGMARRAALARAIAL 160
|
Length = 269 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-05
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+ K+ P P+K + +SL+ G G+LG NGAGK+T + +M G+ + G A
Sbjct: 11 RVSKVVP-----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR 65
Query: 691 VQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
G+ + G PQE L T RE
Sbjct: 66 PAPGIKV-----------GYLPQEPQLDPEKTVRE 89
|
Length = 556 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 652 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVC 710
L + GE ++GP+GAGK+T ++++ G SG+ V + SM
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF- 76
Query: 711 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-AVEESLKSVNLFHGGVADKQAGKYSGG 769
QE+ L+ LT R+++ G LK A Q V ++ + V + D+ + SGG
Sbjct: 77 -QENNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGI--ADYLDRLPEQLSGG 132
Query: 770 MKRRLSVAISLI 781
++R+++A L+
Sbjct: 133 QRQRVALARCLV 144
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 14/157 (8%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMM--IGITRTTSGTAYVQGLDI-- 696
+K A+N +SL E ++GP+G+GK+T I+ M + T +G+ G +I
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 697 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 754
RTD + +G+ Q+ + ++ E++++ RLK +K L +AVE+SLK +++
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIW 135
Query: 755 HGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V D+ A SGG ++R+ +A L +PK+ L
Sbjct: 136 D-EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL 171
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRI 703
A+ G+++ + GE +LG NGAGK+T + GI + +SG G I R + ++
Sbjct: 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80
Query: 704 YTSMGVCPQEDLLWETLTGREHLLF---------YGRLKNLKGPA--LTQAVEESLKSVN 752
S+G+ Q+ ++ LF +G + NLK P + + V+ +LK
Sbjct: 81 RESVGMVFQDP---------DNQLFSASVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTG 130
Query: 753 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ H + DK S G K+R+++A L+ PKV
Sbjct: 131 IEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
Length = 283 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 34/197 (17%)
Query: 611 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 670
RE++E H + +L IY G EK AVN +S+ + ++GP+G G
Sbjct: 6 REKIEIAPFPEAKEHILEVKDL-SIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCG 59
Query: 671 KTTF---ISMM---IGITRTTSGTAYVQGLDI----------RTDMDRIYTSMGVCPQED 714
K+TF I+ M I R + G +GL+I R ++ ++ P+
Sbjct: 60 KSTFLRSINRMNDLIPSAR-SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKS- 117
Query: 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK---QAGKYSGGMK 771
++ +T H L Y + L + VEESL L+ V D+ A SGG +
Sbjct: 118 -IYNNIT---HALKYAGERR--KSVLDEIVEESLTKAALWD-EVKDRLHSSALSLSGGQQ 170
Query: 772 RRLSVAISLIGNPKVRL 788
+RL +A +L P V L
Sbjct: 171 QRLCIARTLAMKPAVLL 187
|
Length = 268 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AV ++L + +GP+G GK+T + + + G A V+G ++ D + +Y
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG-ARVEG-EVLLDGEDLYGP 76
Query: 707 MGVCP-----------QEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 754
GV P Q + T++ R++++ +L ++ L + VE+SL+ NL+
Sbjct: 77 -GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW 135
Query: 755 HGGVAD---KQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ V D K G SGG ++RL +A ++ P V L
Sbjct: 136 N-EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL 171
|
Length = 258 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 38/183 (20%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
AI NL K + G + ++G+ L + GE ++GP+G+GKTT + + + +
Sbjct: 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL--------LFYGR--LKNL 735
+GT V DI D R S+ Q+ L+ + R+H+ LF R L+N+
Sbjct: 57 AGTIRVG--DITIDTAR---SLS--QQKGLIRQL---RQHVGFVFQNFNLFPHRTVLENI 106
Query: 736 -------KGPALTQAVE---ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
KG +A E L V L G + SGG ++R+++A +L P+
Sbjct: 107 IEGPVIVKGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPE 164
Query: 786 VRL 788
V L
Sbjct: 165 VIL 167
|
Length = 250 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682
I+ +++ + R+G+ A+ S +P G ++G NG+GK+T ++G
Sbjct: 3 QQAGIVVNDVTVTW--RNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV 57
Query: 683 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDLLWE--------TLTGREHLLFYGRLK 733
R SG + G R + + + PQ E++ W + GR YG +
Sbjct: 58 RLASGKISILGQPTRQALQK--NLVAYVPQSEEVDWSFPVLVEDVVMMGR-----YGHMG 110
Query: 734 NLKGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
L+ Q V +L V++ +Q G+ SGG K+R+ +A
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVE--FRHRQIGELSGGQKKRVFLA 154
|
Length = 272 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702
+ +S +P G+ ++G NG+GK+T +MIGI + SG + I + ++
Sbjct: 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80
Query: 703 IYTSMGVC---PQEDLLWETLT-----GRE-HLLFYGRLKNLKGPALTQAVEESLKSVNL 753
+ +G+ P + + G E H + Y + + V E+LK V++
Sbjct: 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH--------RRVSEALKQVDM 132
Query: 754 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
AD + SGG K+R+++A L NP V
Sbjct: 133 LE--RADYEPNALSGGQKQRVAIAGVLALNPSV 163
|
Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTDM- 700
K + G++L + GE ++GPNG+GK+T ++G T G +G DI TD+
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI-TDLP 70
Query: 701 --DRIYTSMGVCPQE 713
+R + + Q
Sbjct: 71 PEERARLGIFLAFQY 85
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGIT---RTTSGTAY---------V 691
A+ ++L++P E ++GP+G GK+TFI ++MI + + T Y V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 692 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKS 750
+++R ++ ++ PQ +++ + R+ K L + VE+SLK
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIF--------DNVAYGPRIHGTKNKKKLQEIVEKSLKD 138
Query: 751 VNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V L+ V D+ QA SGG ++RL +A +L NP V L
Sbjct: 139 VALWD-EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLL 178
|
Length = 259 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGV 709
L + +GE + G NGAGKTT + ++ G+ SG + G D R +G
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769
P L L+ E+L F L L G Q +L V L G D + S G
Sbjct: 90 LPG---LKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGL--AGYEDTLVRQLSAG 141
Query: 770 MKRRLSVA 777
K+RL++A
Sbjct: 142 QKKRLALA 149
|
Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDI 696
+K + G++L + GE ++GPNG+GK+T + G TSGT +G D+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ A++ +SL + ++GP+G GK+TF+ + + G V+G +I D + I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-VEG-EILLDGENI 75
Query: 704 YTSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNLKGPA-LTQAVEE 746
Y P D++ L R ++F YG R+ +K A L + VE
Sbjct: 76 YD-----PHVDVV--ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVER 128
Query: 747 SLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
SL+ L+ V D+ A SGG ++RL +A +L P+V L
Sbjct: 129 SLRHAALWD-EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL 172
|
Length = 253 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 19/156 (12%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700
+K + +S ++ GE ++GP+G+GK+T I +++ + TSG + G+DIR +
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 760
D + +G+ Q+ LL+ T RE++ GR A + +EE+LK N H +A+
Sbjct: 399 DSLRKRIGIVSQDPLLFSG-TIRENIA-LGRPD-----ATDEEIEEALKLANA-HEFIAN 450
Query: 761 KQAGKY----------SGGMKRRLSVAISLIGNPKV 786
G SGG ++RL++A +L+ NP +
Sbjct: 451 LPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486
|
Length = 567 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDI-- 696
+ A+ G+ L E ++GP+G GK+T++ + + T +G ++G +I
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 697 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 754
D+ ++ +G+ Q+ + + E++++ RL +K A L +AVE SLK ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 755 HGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V D A SGG ++R+ +A L P V L
Sbjct: 136 D-EVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL 171
|
Length = 252 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696
E G+LGPNG GKTTFI M+ G+ + G ++ +
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702
+ +S ++ GE G++G G+GK++ + + + +SG+ + G+DI +
Sbjct: 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75
Query: 703 IYTSMGVCPQEDLL 716
+ + + + PQ+ +L
Sbjct: 76 LRSRISIIPQDPVL 89
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A++ +SL G+ G++G NG+GK+T +++ G T G G ++ I S
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAIS 93
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
G+ Q LTG E++ F K + + ++ L G + KY
Sbjct: 94 AGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL--GEFIYQPVKKY 144
Query: 767 SGGMKRRLSVAISLIGNPKV 786
S GM+ +L +I++ NP +
Sbjct: 145 SSGMRAKLGFSINITVNPDI 164
|
Length = 264 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT---- 705
G+ L +GE +LG NGAGK+T + ++ GI SGT + G
Sbjct: 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG--------NPCARLTP 80
Query: 706 ----SMGV--CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN 752
+G+ PQE LL+ L+ +E++LF L K A Q +++ L ++
Sbjct: 81 AKAHQLGIYLVPQEPLLFPNLSVKENILF--GLP--KRQASMQKMKQLLAALG 129
|
Length = 510 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 700
E+ + LSL L GE +LG +G+GK+T + ++ G + G + G+ +
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHL 726
+ + + V Q L++T T R +L
Sbjct: 71 KALSSLISVLNQRPYLFDT-TLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 11/174 (6%)
Query: 350 IIGTLFFTWVVLQLFPVILTALVY--EKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSI 407
+ F + + L L IL +L+ E + ++ + G +L +S +
Sbjct: 46 LSSFSFLSALFLPLLIAILASLLVSREFKNGTIKLLLSLPISRGKIFLAKLLVLLILSLL 105
Query: 408 YMLCFVVFGSVIGLRFF-------TLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTA 460
L ++ + GL L + + + L I L ++ L N A
Sbjct: 106 ASLLLLLLSLIAGLLLGGSGFSLSLLLGALLLLLLLSLLALLLILLILFLSLLLRNSAVA 165
Query: 461 SVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTY 514
IG + + LLG+ L P I + L L
Sbjct: 166 IGIGLLLILLGLLLGSLPLWLL--FPWSYLPLIVLLSLSLNGTLLSSGLSIIIA 217
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 230 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---------DIR 697
A+ G+S+ + + ++GP+G GK+TFI + I+ G V+G+ D R
Sbjct: 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVKVEGVVDFFGQNIYDPR 80
Query: 698 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH- 755
+++R+ +G+ Q + ++ E++ + R+ L L + VE +LK L+
Sbjct: 81 ININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE 139
Query: 756 -GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+K A SGG ++RL +A +L PKV L
Sbjct: 140 VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLL 173
|
Length = 259 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 49/159 (30%)
Query: 638 GRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697
+ ++L +P GE ++GP G+GK++ +S ++G SG+ V G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---- 66
Query: 698 TDMDRIYTSMGVCPQED-LLWETLTGREHLLF--------YGR----------LKNLKGP 738
S+ QE + T+ RE++LF Y + L+ L
Sbjct: 67 --------SIAYVSQEPWIQNGTI--RENILFGKPFDEERYEKVIKACALEPDLEILPDG 116
Query: 739 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
LT+ E K +NL SGG K+R+S+A
Sbjct: 117 DLTEIGE---KGINL-------------SGGQKQRISLA 139
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDI-- 696
EK AV +++ + + ++GP+G GKTT + + + G Y +G DI
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 697 -RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLF 754
+ D+ +G+ Q+ + ++ +++ F R+ +K L + VEESLK L+
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW 133
Query: 755 H--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+K + SGG ++RL +A +L P+V L
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
|
Length = 250 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 646 VAVNG----LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698
VAV+ LS + +GE ++GPNGAGK+T ++ M G+ SG+ G +
Sbjct: 6 VAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEA 61
|
Length = 248 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLD 695
GN E A++G+SL E ++GP+G GK+TF+ + + +G +G +
Sbjct: 15 GNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 696 I---RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSV 751
I + D+ + +G+ Q+ + + +++ + ++ +K L Q VEESLK
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQA 131
Query: 752 NLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
++ D+ A +SGG ++R+ +A +L PKV L
Sbjct: 132 AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVL 170
|
Length = 251 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 34/143 (23%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR--IYTSMG 708
+SL + ++G +G+GK+T +++G + SG + G ++ D+DR + +
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK-DIDRHTLRQFIN 551
Query: 709 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQA 763
PQE ++ + + E+LL G +N+ + A E + ++++ L + ++
Sbjct: 552 YLPQEPYIF-SGSILENLLL-GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
SGG K+R+++A +L+ + KV
Sbjct: 610 SSISGGQKQRIALARALLTDSKV 632
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 709
L+L + GE G++GP+G+GK+T ++ + G V G+D+ D + MGV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 710 CPQEDLLWETLTGREHLLFYGRLKNLKGP------ALTQAVEESLKSVNLFHG--GVADK 761
QE++L+ + R+++ L N P A A S L G +
Sbjct: 536 VLQENVLFSR-SIRDNI----ALCNPGAPFEHVIHAAKLAGAHDFIS-ELPQGYNTEVGE 589
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKV 786
+ SGG ++R+++A +L+GNP++
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRI 614
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
++ + +S LP+G + G NGAGKTT + ++ G+ G + I+ D+
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+ + LT RE+ L+ ++ + E + +L H + D
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEH--LIDYPC 125
Query: 764 GKYSGGMKRRLSV 776
G S G KR++++
Sbjct: 126 GLLSSGQKRQVAL 138
|
Length = 200 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 42/171 (24%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMM---IGITRTTSGTAYVQGLDIR 697
+K A+ +S+ +P +GP+G GK+T + M + R ++G +IR
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR-------IEG-EIR 88
Query: 698 TDMDRIYTSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNLKGPA-L 740
D IY + D+ L R ++F YG RL+ + L
Sbjct: 89 LDGQNIYD-----KKVDVA--ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141
Query: 741 TQAVEESLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+AVE SL+ L+ V D+ A SGG ++RL +A ++ P+V L
Sbjct: 142 DEAVERSLRGAALWD-EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLL 191
|
Length = 272 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 630 DNLRKIYPGRDG--NPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
+L+K YP + G PE++ A++G+S L G+ ++G +G GK+T ++ I T
Sbjct: 9 IDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT 68
Query: 686 SGTAYVQGLD 695
G Y QG D
Sbjct: 69 GGELYYQGQD 78
|
Length = 327 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 37/161 (22%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-----------AYVQGLD 695
AV+G++L L GE G++G +G GK+TF +IG+ + T G +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 696 IRTDMDRIYTS--------MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 747
+R+D+ I+ M + +++ E L ++ +L Q V++
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTI---GEIIAEPLR-----TYHPKLS-------RQEVKDR 140
Query: 748 LKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPK 785
+K++ L G + ++ ++SGG +R+ +A +LI PK
Sbjct: 141 VKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPK 181
|
Length = 331 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
Y + V +S G+ ++GP GAGK+T I+++ + SG + G D
Sbjct: 344 YDNS-----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398
Query: 696 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLK 749
IRT + ++ V Q+ L+ + +++ GR + QA + +
Sbjct: 399 IRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRV-GRPDATDEEMRAAAERAQAHDFIER 456
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
+ + V ++ + SGG ++RL++A +L+ +P
Sbjct: 457 KPDGY-DTVVGERGRQLSGGERQRLAIARALLKDP 490
|
Length = 588 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIYT 705
+ + L + GE ++GP+G+GK+T + + + TSG V GL + D I
Sbjct: 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77
Query: 706 SMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
G+ Q+ L+ LT E+++F G R++ + E L V L A
Sbjct: 78 EAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEEAEKQARELLAKVGL--AERAHHYP 134
Query: 764 GKYSGGMKRRLSVAISLIGNPKVRL 788
+ SGG ++R+++A +L PK+ L
Sbjct: 135 SELSGGQQQRVAIARALAVKPKLML 159
|
Length = 240 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS----MGVCPQE 713
GE G+LGPNG GKTTF+ ++ G+ + G D++ Y S V E
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEG----SEEDLKVSYKPQYISPDYDGTV---E 419
Query: 714 DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773
DLL + ++ E +K +NL + ++ + SGG +R
Sbjct: 420 DLLRSAIRSAFGSSYF--------------KTEIVKPLNL--EDLLERPVDELSGGELQR 463
Query: 774 LSVAISL 780
+++A +L
Sbjct: 464 VAIAAAL 470
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQED 714
G ++G +GAGKTT ++++ T T G V G + + R S+G Q+D
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR---SIGYVQQQD 845
Query: 715 LLWETLTGREHLLFYGRLKNLKGPALTQA---VEESLKSVNLFHGGVADKQAGKYSGGM- 770
L T T RE L F L+ K + ++ VEE +K + + AD G G+
Sbjct: 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM--ESYADAVVGVPGEGLN 903
Query: 771 ---KRRLSVAISLIGNPKVRLSL 790
++RL++ + L+ PK+ L L
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFL 926
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTF---ISMMIGIT---RTTSGTAYVQGLDI- 696
+K AV ++L + G ++GP+G GKTTF I+ M +T R T G + G DI
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT-GRILLDGQDIY 74
Query: 697 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNL 753
R D + +G+ Q+ + T++ ++++ +L ++ L + E SL+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 754 FHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ V D+ A SGG ++RL +A +L P++ L
Sbjct: 135 WD-EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILL 171
|
Length = 252 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 44/182 (24%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGK--TTFISM-MIGITRTTSG 687
+LR + DG+ AVN L+ +L +GE G++G +G+GK T F M ++ G
Sbjct: 17 DLRVTFSTPDGD--VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 688 TAYVQGLDI----RTDMDRI------------YTS----MGVCPQEDLLWETLTGREHLL 727
+A G +I +++++ TS M V Q L E L H
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQ---LMEVL--MLH-- 127
Query: 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGN 783
KG + +A EES++ ++ A K+ Y SGGM++R+ +A++L+
Sbjct: 128 --------KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCR 179
Query: 784 PK 785
PK
Sbjct: 180 PK 181
|
Length = 330 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707
V ++L + GE ++G NG+GK+T ++ G+ + SG + G + + Y
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK- 397
Query: 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAG-- 764
L+ + HL + +L +G A Q +E+ L+ + L H + D +
Sbjct: 398 --------LFSAVFSDYHL--FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL 447
Query: 765 KYSGGMKRRLSVAISLI 781
K S G K+RL++ ++L+
Sbjct: 448 KLSTGQKKRLALLLALL 464
|
Length = 546 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 35/177 (19%)
Query: 631 NLRKIYPGRDGNPEKVAV-NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++R+ YP + E+V V G+SL + +GE ++G +G+GK+T ++++ + + TSGT
Sbjct: 9 DIRRSYPSGE---EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY 65
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRL------KNLKGPA 739
V G D+ +D D L REH F Y L +N++ PA
Sbjct: 66 RVAGQDV-ATLDA-----------DAL--AQLRREHFGFIFQRYHLLSHLTAAQNVEVPA 111
Query: 740 LTQAVE--ESLKSVN--LFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRLS 789
+ +E + L L G+ D+ Q + SGG ++R+S+A +L+ +V L+
Sbjct: 112 VYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILA 168
|
Length = 648 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA----YVQGLDIRTDMDRIY 704
N +S + G ++G +GAGKTT + ++ G R T+G + G + + R
Sbjct: 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVITGEILINGRPLDKNFQRS- 80
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEESLKSVNLF 754
G Q+D+ LT RE L F L+ L + LT VE + K LF
Sbjct: 81 --TGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILF 131
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 599 FVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSG 658
F +E D +RE P A+ ++ + V +S +G
Sbjct: 309 FFDLE--DSVFQREEPADAPELPNVKGAVEFRHITFEFAN-----SSQGVFDVSFEAKAG 361
Query: 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698
+ ++GP GAGKTT I+++ + T G + G+DI T
Sbjct: 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMD 701
+ G++L + GE ++GPNG+GK+T ++G T G G DI ++
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI-LELS 74
|
Length = 251 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 584 SSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNP 643
SS + S+ + ++F+S E+ E + +E+ ++PG ++I N + RD P
Sbjct: 598 SSIVQASVSLKRLRIFLSHEE----LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPP 652
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+NG++ ++P G ++G G GK++ +S ++ G +++G
Sbjct: 653 ---TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------- 699
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES---LKSVNLFHGGVAD 760
S+ PQ+ + + + RE++LF L Q V E+ L + + G
Sbjct: 700 --SVAYVPQQAWI-QNDSLRENILFGKALN----EKYYQQVLEACALLPDLEILPSGDRT 752
Query: 761 KQAGK---YSGGMKRRLSVAISLIGNPKVRL 788
+ K SGG K+R+S+A ++ N + L
Sbjct: 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYL 783
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 18/141 (12%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705
+ +S + +GE G++G GAGK+T I + G + G+DI T ++ + +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
S+ + PQ+ LF G +++ P + EE ++ + GG+
Sbjct: 83 SLTIIPQDP-----------TLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGL------N 125
Query: 766 YSGGMKRRLSVAISLIGNPKV 786
S G ++ L +A +L+ P+V
Sbjct: 126 LSQGQRQLLCLARALLKRPRV 146
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ YP DG P A+ ++L + GE G++G NG+GK+T + G+ R G
Sbjct: 5 ENVSYSYP--DGTP---ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 690 YVQGLD 695
V G+D
Sbjct: 60 LVSGID 65
|
Length = 274 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 8e-04
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG--------LDIRTD 699
+NG+S ++ GE ++G NG+GK+T ++ G+ G + G ++R
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 759
+ ++ + P + T+ + + F + + + + V+E+L +VN+
Sbjct: 83 IGMVFQN----PDNQFVGATV--EDDVAFGMENQGIPREEMIKRVDEALLAVNMLD--FK 134
Query: 760 DKQAGKYSGGMKRRLSVAISLIGNPKV 786
++ + SGG K+R++VA + P++
Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEI 161
|
Length = 277 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 36/155 (23%)
Query: 639 RDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698
G + + S + GE +LG G+G +T + + T G V+G DI
Sbjct: 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTL---LKALANRTEGNVSVEG-DIHY 69
Query: 699 D------MDRIYTSMGV-CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 751
+ Y + +ED+ + TLT RE L F R K
Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG----------------- 112
Query: 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
N F G+ SGG ++R+S+A +L+ V
Sbjct: 113 NEFVRGI--------SGGERKRVSIAEALVSRASV 139
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-04
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 643 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691
K V S + G+ ++GPNG GKTT + +M+G + SG +
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378
|
Length = 635 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 9e-04
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISM------MIGITRTTSGTAYVQGLDIRT-- 698
A+ G+S+ + +GP+G GK+TF+ + +I TR G + G +I
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR-LEGEIRIDGRNIYDKG 76
Query: 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFHG 756
+D + ++G+ Q + + E++ + R+ +K A + Q VEE+LK L+
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD- 134
Query: 757 GVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
V DK A SGG ++RL +A ++ +P V L
Sbjct: 135 EVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLL 169
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI----TRTTSGTAYVQGLDIRTDMDR 702
V L+L+L GE ++G +G+GK+ ++G+ TSG + G + R
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 703 -IYTSMGVCPQEDLLWETLTGREH----LLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
+ + + T H L G+L + +A+E V L
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA----VGLPDPE 116
Query: 758 -VADKQAGKYSGGMKRRLSVAISLIGNP 784
V K + SGGM +R+ +A++L+ P
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEP 144
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 27/164 (16%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGL----------- 694
A++ + L + GE +LGP+G+GK+T + + G IT S ++++ L
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 695 -DIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL--------FYGRLKNLKGPALTQAVE 745
DIR R T G Q+ L L+ E++L F+ + Q
Sbjct: 79 RDIRK--SRANT--GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
++L V + H A ++ SGG ++R+++A +L+ KV L+
Sbjct: 135 QALTRVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176
|
Length = 262 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGIT 682
AI + NLR +Y G + + G+ L +P F ++GP+G GK+T + + ++ +
Sbjct: 4 AIETVNLR-VYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
Query: 683 RTT--SGTAYVQGLDIRT-DMD--RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 737
G + G +I + D+D + +G+ Q + LT +++ +L L
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 738 PA--LTQAVEESLKSVNLFHGGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
L + VE +LK L+ V D+ SGG ++RL +A +L PK+ L
Sbjct: 118 SKKELDERVEWALKKAALWDE-VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172
|
Length = 253 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GE G++GPNG GKTT + ++ G
Sbjct: 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681
A++ +SL + +GE + G NGAGK+T + ++ G+
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54
|
Length = 506 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 48/183 (26%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
L K Y G G +S L GE G++G +G+GK+T + + G GTA
Sbjct: 8 GLSKSYGGGKG------CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
Query: 691 VQGLD-----------------IRTDMD----------RIYTSMGVCPQEDLLWETLTGR 723
+RT+ R+ S G E L+ G
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM---AIGA 118
Query: 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783
H YG ++ ++ L+ V + + D +SGGM++RL +A +L+
Sbjct: 119 RH---YGNIR--------ATAQDWLEEVEIDPTRIDDLPR-AFSGGMQQRLQIARNLVTR 166
Query: 784 PKV 786
P++
Sbjct: 167 PRL 169
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI---SMMIGITRT--TSGTAYVQGLDI-R 697
EK A+ +S+ +P ++GP+G GK+TFI + M + + G ++G DI
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 698 TDMD--RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 755
D+D + ++G+ Q+ + ++ +++ + R+ L VE +L+S L+
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142
Query: 756 GGVADK---QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+D+ A SGG ++RL +A +L PK+ L
Sbjct: 143 -ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL 177
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
+A+ +NL K + L+L L +GE ++G NG GKTT + ++G
Sbjct: 318 NALEVENLTKGFDNG------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371
Query: 685 TSGT 688
SGT
Sbjct: 372 DSGT 375
|
Length = 530 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 30/174 (17%)
Query: 631 NLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
NL K + R G AV +S L G+ ++G NG+GK+T M+ G+ TSG
Sbjct: 9 NLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG 68
Query: 688 TAYVQGL-----DIRTDMDRIYT-----SMGVCPQED---LLWETLTGREHLLFYGRLKN 734
+ D RI + + P+ +L L +
Sbjct: 69 EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR---------LNTD 119
Query: 735 LKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L+ + + E+L+ V L H + G K+R+++A +LI PK+
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHM---LAPGQKQRVALARALILRPKI 170
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 627 IISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
I N+ KI+ P E A++ +S+ + GE ++G G+GKTTFI + +
Sbjct: 3 IKVKNIVKIF--NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60
Query: 686 SGT 688
+GT
Sbjct: 61 TGT 63
|
Length = 305 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 35/178 (19%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
DNL K Y ++G+ + ++ +S ++ GE ++G +G+GK+T + ++ G+ TSG
Sbjct: 9 DNLCKRY--QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE--------HLL-FYGRLKNLKGPAL 740
G + + + + +L ++ HLL + L+N+ P L
Sbjct: 67 IFNG--------QPMSKLSSAAKAEL-----RNQKLGFIYQFHHLLPDFTALENVAMPLL 113
Query: 741 ---------TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
E L +V L H A+ + + SGG ++R+++A +L+ NP++ L+
Sbjct: 114 IGKKKPAEINSRALEMLAAVGLEHR--ANHRPSELSGGERQRVAIARALVNNPRLVLA 169
|
Length = 233 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 45/194 (23%)
Query: 603 EKPDVT---QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGE 659
+KP+VT +Q+ L +N+ YP + + + GLSL + +GE
Sbjct: 320 QKPEVTFPTTSTAAADQVSLT--------LNNVSFTYPDQ----PQPVLKGLSLQIKAGE 367
Query: 660 CFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQE-D 714
+LG G GK+T + + +TR G + G I + ++ V Q
Sbjct: 368 KVALLGRTGCGKSTLLQL---LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH 424
Query: 715 LLWETLTGREHLLFYGRLKNLKGPALT-QAVEESLKSVNLFHGGVADKQAG--------- 764
L TL R++LL L P + +A+ E L+ V L + + G
Sbjct: 425 LFSATL--RDNLL-------LAAPNASDEALIEVLQQVGL--EKLLEDDKGLNAWLGEGG 473
Query: 765 -KYSGGMKRRLSVA 777
+ SGG +RRL +A
Sbjct: 474 RQLSGGEQRRLGIA 487
|
Length = 574 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 48/183 (26%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
L K+Y G +S L GE G++G +G+GKTT + + G +GT
Sbjct: 11 GLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
Query: 691 V-----QGLDI------------RTDMD----------RIYTSMGVCPQEDLLWETLTGR 723
Q D+ RT+ R+ S G E L+ G
Sbjct: 65 YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM---AIGA 121
Query: 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783
H YG ++ L + VE L + D +SGGM++RL +A +L+
Sbjct: 122 RH---YGNIRAEAQDWL-EEVEIDLDRI--------DDLPRTFSGGMQQRLQIARNLVTR 169
Query: 784 PKV 786
P++
Sbjct: 170 PRL 172
|
Length = 258 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
EK A+ + L +P +GP+G GK+TF+ + + T G V G I D + I
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG-CRVTG-KITLDGEDI 88
Query: 704 Y-TSMGVCPQEDLLWETLTGREHLLF---------------YG-RLKNL-KGPA-LTQAV 744
Y + V L R ++F YG R+ L + A L + V
Sbjct: 89 YDPRLDVVE--------LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIV 140
Query: 745 EESLKSVNLFHGGVADK--QAGK-YSGGMKRRLSVAISLIGNPKVRL 788
E SL+ L+ V D+ + G SGG ++RL +A ++ +P+V L
Sbjct: 141 ETSLRKAGLW-EEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186
|
Length = 267 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 23/155 (14%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ +N +S +L +GE + GP+G GK+T + ++ + TSGT +G DI T I
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 704 Y-TSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD- 760
Y + C Q L+ +T+ ++L+F +++N Q + ++ +L + D
Sbjct: 79 YRQQVSYCAQTPTLFGDTV--YDNLIFPWQIRN-------QQPDPAIFLDDLERFALPDT 129
Query: 761 ---KQAGKYSGGMKRRLSVAISLIGN----PKVRL 788
K + SGG K+R ISLI N PKV L
Sbjct: 130 ILTKNIAELSGGEKQR----ISLIRNLQFMPKVLL 160
|
Length = 225 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 42/208 (20%), Positives = 75/208 (36%), Gaps = 63/208 (30%)
Query: 603 EKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFG 662
EK T+ ER + + YPGRD + A++ +SL + GE
Sbjct: 316 EKDTGTRAIERARGDVEFRNVTFR---------YPGRD----RPALDSISLVIEPGETVA 362
Query: 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722
++G +G+GK+T ++++ SG + G D+ D +L
Sbjct: 363 LVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA----------------DYTLASL-- 404
Query: 723 REHL--------LF---------YGRLKNLKGPALTQAVEESLKSVNL----------FH 755
R + LF YGR A +E +L +
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRT----EQADRAEIERALAAAYAQDFVDKLPLGLD 460
Query: 756 GGVADKQAGKYSGGMKRRLSVAISLIGN 783
+ + SGG ++RL++A +L+ +
Sbjct: 461 TPIGEN-GVLLSGGQRQRLAIARALLKD 487
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 627 IIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
II +++ YP + A+ +S ++ GE ++G NG+GK+T ++ G+
Sbjct: 5 IIRVEHISFRYP----DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 686 SGTAYVQGL--------DIR 697
+GT V G+ D+R
Sbjct: 61 AGTITVGGMVLSEETVWDVR 80
|
Length = 279 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDI------ 696
++G++L +P ++GP+G+GK+T + + + SG Y+ G DI
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 697 --RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
R + ++ P + G L RL K L + V +L+ L+
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALG----LKLNRLVKSKK-ELQERVRWALEKAQLW 133
Query: 755 H--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
D AGK SGG ++RL +A +L P+V L+
Sbjct: 134 DEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA 170
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----YVQGLDI 696
N K ++ L+L + + +GP+G GK+TF+ + + GT+ Y G +
Sbjct: 92 NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151
Query: 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRLKN--LKGPALTQAVEESLKS 750
R+ + +S+ + + ++++ T E +F YG N L + VE+SLKS
Sbjct: 152 RS---KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS 208
Query: 751 VNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
L+ DK SGG ++RL +A ++ P+V L
Sbjct: 209 AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248
|
Length = 329 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDRIYTSMG 708
L + GE +GP+G GK+T + M+ G+ TSG ++ + R + +R +G
Sbjct: 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--EKRMNDVPPAER---GVG 78
Query: 709 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768
+ Q L+ L+ E++ F +L K + Q V + + + L H + D++ SG
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH--LLDRKPKALSG 136
Query: 769 GMKRRLSVAISLIGNPKVRL 788
G ++R+++ +L+ P V L
Sbjct: 137 GQRQRVAIGRTLVAEPSVFL 156
|
Length = 369 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 35/159 (22%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707
++GL+ ++ +GE ++GP+G+GK+T + +++ + G V+G + M +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG-EQLYHMPGRNGPL 74
Query: 708 GVCPQEDLLWETLTGREHLLFYG--------RLKNL-------KGPALTQAVEESLKSVN 752
P ++ + + ++F L N+ G A +A + +++ ++
Sbjct: 75 --VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLD 132
Query: 753 LFHGGVADKQ---AGKYSGGMKRRLSVAISLIGNPKVRL 788
+ G+ADK + SGG ++R+++A +L PKV L
Sbjct: 133 MV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVML 169
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GE G++GPNG GKTTF ++ G+ + G
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
|
Length = 590 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697
AV +S + +GE G+ G G G+T + G+ SG + G +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTD 699
G +++ ++ + L L G G+LG NGAGK+T I ++ G SG +G+
Sbjct: 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI----- 375
Query: 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 759
+G Q L E L E L + L L L Q + + L F G
Sbjct: 376 ------KLGYFAQHQL--EFLRADESPLQH--LARLAPQELEQKLRDYLGGFG-FQGDKV 424
Query: 760 DKQAGKYSGGMKRRLSVAI 778
++ ++SGG K RL +A+
Sbjct: 425 TEETRRFSGGEKARLVLAL 443
|
Length = 638 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A+ ++L + GE +LG NGAGK+T + ++ GI T GT + ++ ++
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 707 MG--VCPQEDLLWETLTGREHLLFYGRL 732
+G + QE + + LT E+ L+ GR
Sbjct: 80 LGIGIIYQELSVIDELTVLEN-LYIGRH 106
|
Length = 510 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696
LS + +GE ++GPNGAGK+T ++ M G+T + SG+ G +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPL 62
|
Length = 248 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 800 | |||
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.98 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.98 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.98 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.98 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.98 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.98 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.98 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.98 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.98 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.98 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.97 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.97 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.97 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.97 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.97 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.97 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.97 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.97 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.97 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.96 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.96 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.96 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.96 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.96 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.96 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.96 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.96 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.96 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.96 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.96 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.96 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.96 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.96 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.96 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.96 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.96 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.96 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.96 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.96 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.96 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.96 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.96 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.96 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.96 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.96 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.96 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.96 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.96 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.96 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.96 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.96 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.96 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.96 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.96 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.95 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.95 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.95 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.95 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.95 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.95 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.95 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.95 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.95 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.95 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.95 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.95 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.95 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.95 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.95 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.95 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.95 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.95 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.95 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.95 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.95 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.95 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.95 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.95 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.95 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.95 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.95 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.95 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.95 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.95 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.95 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.95 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.95 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.95 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.94 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.94 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.94 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.94 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.94 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.94 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.94 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.94 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.94 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.94 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.94 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.94 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.94 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.94 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.94 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.94 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.94 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.94 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.94 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.94 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.94 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.94 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.94 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.94 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.94 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.94 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.94 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.94 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.94 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.93 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.93 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.93 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.93 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.93 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.93 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.93 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.93 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.93 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.93 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.93 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.93 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.93 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.93 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.93 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.93 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.93 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.93 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.93 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.93 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.93 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.93 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.93 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.93 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.93 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.93 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.92 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.92 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.92 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.92 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.92 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.92 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.92 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.92 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.92 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.92 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.92 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.92 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.92 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.92 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.92 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.92 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.92 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.92 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.92 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.91 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.91 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.91 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.91 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.91 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.91 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.91 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.91 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.9 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.9 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.9 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.9 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.9 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.89 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.89 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.89 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.89 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.88 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.88 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.88 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.87 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.87 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.86 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.86 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.85 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.85 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.84 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.84 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.84 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.83 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.83 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.8 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.76 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.75 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.74 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.74 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.73 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.73 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.67 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.67 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.66 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.66 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.65 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.62 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.61 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.6 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.59 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.58 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.57 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.57 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.56 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.51 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.48 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.46 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.46 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.45 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.45 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.41 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.36 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.36 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.35 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.31 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.28 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.28 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.11 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.09 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.07 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.06 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 99.05 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.98 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.97 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.86 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.84 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.84 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.83 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.78 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.71 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.68 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.66 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 98.63 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.62 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.6 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.58 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.58 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.41 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.37 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.35 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.33 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.33 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.29 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.27 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.24 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.23 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.21 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.21 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.15 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.13 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.06 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.05 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.04 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.04 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.04 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.01 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.0 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.95 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.95 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.95 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 97.94 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.91 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.88 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.85 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.82 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.8 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.79 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.79 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.76 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 97.76 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 97.75 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.74 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.73 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.72 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.68 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.68 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.66 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 97.66 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.66 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.66 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.65 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 97.65 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 97.63 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.62 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 97.62 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.61 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.56 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.55 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.55 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.55 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.55 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.54 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 97.52 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 97.5 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.49 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.48 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.47 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 97.46 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.44 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.43 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 97.42 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.38 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.37 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.31 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 97.28 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 97.27 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.25 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.21 | |
| PRK06820 | 440 | type III secretion system ATPase; Validated | 97.21 | |
| PRK06936 | 439 | type III secretion system ATPase; Provisional | 97.19 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.15 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.13 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.07 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 97.02 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.99 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 96.98 |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-69 Score=652.58 Aligned_cols=646 Identities=32% Similarity=0.448 Sum_probs=499.1
Q ss_pred ccccccccccCCCccccCCCCCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCceEEEeccCCcchhhhhhh
Q 003716 80 VEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNK 159 (800)
Q Consensus 80 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 159 (800)
+-+.|..|+....+...|+ .++.++|+...+.++++.... +..-.|+.+..|++.+.++|.+++.+.
T Consensus 45 ~~~~~~~~~~p~~~~~~~~--~~~~~lp~~~~~~~~~~~l~~-------~~~~~~~~t~l~~vfl~~~~~~~~~~~---- 111 (885)
T KOG0059|consen 45 QVTLFIQQHIPDARLVECP--KLVYLLPLKYRREFLFRGLDL-------IASFGVSLTTLEEVFLKLGGESDSLEN---- 111 (885)
T ss_pred HHHHHHHhhCccceecccc--cccccCChhccccchhhhhhc-------ccccccccccHHHHHhhcccccccccc----
Confidence 4467889999999999999 999999999999988777632 566778888999999999999988877
Q ss_pred cccCCCCCCCchhhHHhhhhhccCCCCCCCcccccCCCCCCCCCeEEecCCCCCCC-ceeEeeecccc--ccccceeeec
Q 003716 160 DMFKDTFSENPSDVMASLADNVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRPDS-SFVVPVKVASI--NISLVIRCLQ 236 (800)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~--~~~~~~~~~~ 236 (800)
++..+.+ +....+.+++.+++.....+++..+++|.+-. ...+.+..... ..+.++.|.+
T Consensus 112 ---------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (885)
T KOG0059|consen 112 ---------------DSTEDQV--SGPAKAYTQFQALLRKRFLPLRRNWRLFLAQLLLPSIFVVLALVFSDPHLTLSPSL 174 (885)
T ss_pred ---------------ccccccc--chhHHhhhhHHHHHHHhhhhhhhhhhhHHHHHhhHHHHHHHHHhccCccccCCccc
Confidence 1112222 55677888899999999999999999998832 22222221111 1145788999
Q ss_pred cccccccChhhhhHHhhcccccCCchhhhcceeeEEEe------------------------eccCCCceeEEEEEcccc
Q 003716 237 GLNLWRKSSSEINDELYRGFRKGNSKRESNEILAAYDF------------------------LNSDLEKFNVNIWYNSTY 292 (800)
Q Consensus 237 ~~~~~~~~~~~in~~l~~~~~~~~~~~~~~~~~~a~~f------------------------~~~~~~~~~v~i~yN~t~ 292 (800)
....|.+.+..++++...+...++. .......+++. .........+.+|+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~n~k- 251 (885)
T KOG0059|consen 175 YGALYTNYSGEINTEEFLSVLEANG--KGRNLSLALNNINTEVDNFTVDNWTESSSKNKGDMLGRDLKDVRVSVLFNNK- 251 (885)
T ss_pred cceeeecCCccCCccHHHHhhhccc--ccchhhhhhhcchhhheeeeecceeccccccchhhhcCccccceEEEeeehh-
Confidence 9999999999999988766554431 00111111111 12223345566666663
Q ss_pred CCCCCCCccccchhhhHHHHHHHHHHhhhcCCCceeeeeeeecCCCcchhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHH
Q 003716 293 KNDTGNVPIGLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDV-SSIIGTLFFTWVVLQLFPVILTAL 371 (800)
Q Consensus 293 ~~~~~~~~~~~~~~p~~lN~v~naiLr~~~g~~~~i~~~~~~~~P~~~~~~~~d~-~s~~~~lf~~~~i~~lfp~~v~~i 371 (800)
.+|..|.++|..+|++++...+.+ + ...++|+|+.......+. ..++++.|+.+++...+|.++...
T Consensus 252 ---------~~~~~~~~~~~~~n~l~~~~~~~~--i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (885)
T KOG0059|consen 252 ---------GLHTLPFLLGLGSNALRRALNLSG--I-SVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSL 319 (885)
T ss_pred ---------hhhhHHHhcchHHHHHHHhhcccc--c-eeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHH
Confidence 245678889999999999887655 3 346889998877666666 678889999999999999999999
Q ss_pred HHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHH
Q 003716 372 VYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVA 451 (800)
Q Consensus 372 V~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ayllS 451 (800)
|+||+.|+||+|+|+|+++.+||+++++|+++.+++.++++.+++.+++ ++..++...+++++++|++++++++|++|
T Consensus 320 i~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s 397 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILS 397 (885)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888887776 67778899999999999999999999999
Q ss_pred HhhCchhHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCCCccccC
Q 003716 452 ALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADL 531 (800)
Q Consensus 452 ~fFs~~~tA~v~~~i~~~~~~ll~~~l~~~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~l 531 (800)
++|+++.+|++..+++.+++++.+.+....+......+..+.+...+.|.+.+.++.+.+.+...........++.|.++
T Consensus 398 ~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (885)
T KOG0059|consen 398 FIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVL 477 (885)
T ss_pred HHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999988888877765444444444444455566777778899999999888887766554444556777765
Q ss_pred CCCC--c---------chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCCCCCC-cccc
Q 003716 532 SDSE--N---------GMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQD-SKVF 599 (800)
Q Consensus 532 ~~~~--~---------gi~~~li~m~i~~ilyllL~~yld~v~~~~~gk~p~ffl~~~~~~~~~~~~~~~~~~~~-~~~~ 599 (800)
.... . ..+..++.+..++..+.++...+..- +.++ . +.. ..+.. ....
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~---------------~~~~-~---~~~-~~~~~~~~~~ 537 (885)
T KOG0059|consen 478 GNDESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFVP---------------FKRR-M---RAL-TQNMLKGFEP 537 (885)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hccc-c---ccc-cccccCCCcC
Confidence 4320 0 01222333344444443333322211 1111 0 000 01111 1123
Q ss_pred cccCCCchhHHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 003716 600 VSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 600 ~~~~~~dv~~E~~~v~~~~~~~~~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt 679 (800)
.++|+.||.+|++++++........+.+.+++|+|.|++++ + |++++|+.|++|||+||+|+|||||||++|||+
T Consensus 538 ~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~----~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt 612 (885)
T KOG0059|consen 538 VEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD----G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT 612 (885)
T ss_pred cchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh----h-hhcceEEEecCCceEEEecCCCCCchhhHHHHh
Confidence 45688899999988887666555668999999999998642 2 999999999999999999999999999999999
Q ss_pred CCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCc
Q 003716 680 GITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757 (800)
Q Consensus 680 Gl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~ 757 (800)
|+.+||+|+++++|+++.. +.+++++.||||||+|++|+.||+||||.+|+++||++++++++.++++++.++|. +
T Consensus 613 G~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~ 690 (885)
T KOG0059|consen 613 GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--P 690 (885)
T ss_pred CCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--h
Confidence 9999999999999999976 45568999999999999999999999999999999999999999999999999998 5
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEc--------cCCcccccC
Q 003716 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL--------SSNRFFSDY 799 (800)
Q Consensus 758 ~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD--------~~~~~~~~~ 799 (800)
++|++++.|||||||||++|+|++|+|++++|| .+.|++||-
T Consensus 691 ~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i 740 (885)
T KOG0059|consen 691 YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI 740 (885)
T ss_pred hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999 889999983
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=646.62 Aligned_cols=469 Identities=26% Similarity=0.399 Sum_probs=355.6
Q ss_pred ceeEEEEEccccCCCCCCCccccchhhhHHHHHHHHHHhhhcCCC-----ceeeeeeeecCCCcchhhh-hh----hHhH
Q 003716 281 KFNVNIWYNSTYKNDTGNVPIGLLRVPRSINLASNAYLRSLLGPG-----TQILFDFVKEMPKTDSKLK-LD----VSSI 350 (800)
Q Consensus 281 ~~~v~i~yN~t~~~~~~~~~~~~~~~p~~lN~v~naiLr~~~g~~-----~~i~~~~~~~~P~~~~~~~-~d----~~s~ 350 (800)
+.++++|||++ ++ |+.|.++|+++||++|...|++ ..++ ++++|+|....... .. ....
T Consensus 1612 ~~~~~vwfNn~-----~~-----Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~-v~N~Plp~t~~~~~~~~~~~~~~~~ 1680 (2272)
T TIGR01257 1612 EDNIKVWFNNK-----GW-----HALVSFLNVAHNAILRASLPKDRDPEEYGIT-VISQPLNLTKEQLSEITVLTTSVDA 1680 (2272)
T ss_pred CcceEEEEcCC-----cc-----cHHHHHHHHHHHHHHHHhcccccCCccceEE-EEecCCCCchhhhhhhhhcccchhH
Confidence 34689999994 44 4578999999999999876432 3444 47899997643211 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeec-cch
Q 003716 351 IGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL-NSY 429 (800)
Q Consensus 351 ~~~lf~~~~i~~lfp~~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~-~~~ 429 (800)
+-.+++++.+.++.+.++.++|+||++|+||+|.++|++..+||+++|+|+++.+++.++++++.-.+++...|.. .++
T Consensus 1681 ~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l 1760 (2272)
T TIGR01257 1681 VVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENL 1760 (2272)
T ss_pred HHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchH
Confidence 2233444444455566789999999999999999999999999999999999888877666555444555555554 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHhHHHH---HHHHHHhhcCCCC---chhhhhhhcccchHH
Q 003716 430 GIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLG---AFLLQSFVEDPSF---PRRWITAMELYPGFA 503 (800)
Q Consensus 430 ~~~fll~~lyg~s~I~~ayllS~fFs~~~tA~v~~~i~~~~~~ll~---~~l~~~~~~~~~~---~~~~~~~l~l~P~~~ 503 (800)
..+++++++||+|.||++|++|++|+++.+|++...++.++.|++. .+++..+..+... ......++.++|.||
T Consensus 1761 ~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~ 1840 (2272)
T TIGR01257 1761 PALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFC 1840 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhh
Confidence 6788899999999999999999999999999987666555555432 2333322111111 112233456899999
Q ss_pred HHHHHHHHHhhhhc-------cccCCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 003716 504 LYRGLYEFGTYSFR-------GHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQ 576 (800)
Q Consensus 504 l~~gl~~l~~~~~~-------~~~~~~~g~~w~~l~~~~~gi~~~li~m~i~~ilyllL~~yld~v~~~~~gk~p~ffl~ 576 (800)
+++|+++++..... +.....+.+.|+. ++..+++|++++++|+++++++|+-.. .+
T Consensus 1841 lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~ll~m~~~~iv~flLl~~ie~~~~----------~~ 1903 (2272)
T TIGR01257 1841 LGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDL-------IGKNLVAMAVEGVVYFLLTLLIQHHFF----------LS 1903 (2272)
T ss_pred hHHHHHHHHHhHHHHHHHHhhcccccCCccchhh-------ccHHHHHHHHHHHHHHHHHHHHHhhhh----------hh
Confidence 99999998764321 1111112334432 346789999999999999999996321 00
Q ss_pred cccccccCCCCCCCCCCCCcccccccCCCchhHHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEc
Q 003716 577 NFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 656 (800)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~E~~~v~~~~~~~~~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~ 656 (800)
.+.+. + . . .....||+||.+||++|.+. .....+|+++||+|.|+++ ++.||+|+||+|+
T Consensus 1904 ~~~~~-~----~-----~---~~~~~eD~DV~~Er~rV~~~---~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~ 1963 (2272)
T TIGR01257 1904 RWIAE-P----A-----K---EPIFDEDDDVAEERQRIISG---GNKTDILRLNELTKVYSGT----SSPAVDRLCVGVR 1963 (2272)
T ss_pred hhccc-c----C-----c---CcCCCchhHHHHHHHHHhcc---CCCCceEEEEEEEEEECCC----CceEEEeeEEEEc
Confidence 00000 0 0 0 01134789999999999653 2234689999999999741 3579999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~ 736 (800)
+|||+||+||||||||||+|||+|+++|++|+|+++|+++.++..++++.||||||++.+++.+|++|||.++++++|.+
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999997666667889999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc--------cCCcccccC
Q 003716 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL--------SSNRFFSDY 799 (800)
Q Consensus 737 ~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD--------~~~~~~~~~ 799 (800)
+++.++.++++++.++|. +++|+++++|||||||||++|+||+++|+|+||| .++|.+|+.
T Consensus 2044 ~~~~~~~v~~lLe~lgL~--~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLS--LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred HHHHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 777778899999999997 4899999999999999999999999999999999 788888874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-65 Score=644.64 Aligned_cols=515 Identities=23% Similarity=0.338 Sum_probs=378.9
Q ss_pred cceeeEEEeeccC------CCceeEEEEEccccCCC------CCCC---------cccc--chhhhHHHHHHHHHHhhhc
Q 003716 266 NEILAAYDFLNSD------LEKFNVNIWYNSTYKND------TGNV---------PIGL--LRVPRSINLASNAYLRSLL 322 (800)
Q Consensus 266 ~~~~~a~~f~~~~------~~~~~v~i~yN~t~~~~------~~~~---------~~~~--~~~p~~lN~v~naiLr~~~ 322 (800)
+.+.+|..|.+.. ..+++|+|.+|.+...+ ..|+ .+.| .++-.++++++++|++...
T Consensus 545 ~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~ 624 (2272)
T TIGR01257 545 NRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQM 624 (2272)
T ss_pred CCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHHHHHHHhhc
Confidence 4578888885431 35688999999874211 1111 0112 2555789999999999876
Q ss_pred CCCceeeeeeeecCCCcchhhh--hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHH
Q 003716 323 GPGTQILFDFVKEMPKTDSKLK--LDVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAY 400 (800)
Q Consensus 323 g~~~~i~~~~~~~~P~~~~~~~--~d~~s~~~~lf~~~~i~~lfp~~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~ 400 (800)
+.. ....++.++||+|++... ......+.++|+++.+++....++..+|.|||.|+||.|+||||++++||++||+.
T Consensus 625 ~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~ 703 (2272)
T TIGR01257 625 QAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703 (2272)
T ss_pred CCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 532 233457899999987432 12223345666666655555557889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHhHHHHHHHHH
Q 003716 401 FFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQ 480 (800)
Q Consensus 401 ~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ayllS~fFs~~~tA~v~~~i~~~~~~ll~~~l~~ 480 (800)
.+++.++.+++++++ +....+|..+++.++|+++++|+.+.|.++|++|+||+++++|..++.+++|++.++..+...
T Consensus 704 ~~~~~~i~~~l~~~i--l~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~ 781 (2272)
T TIGR01257 704 SFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFA 781 (2272)
T ss_pred HHHHHHHHHHHHHHH--HhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 765544433332222 223467899999999999999999999999999999999999999998888776543322111
Q ss_pred HhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCCCccccCCC-----CCcchHHHHHHHHHHHHHHHHH
Q 003716 481 SFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSD-----SENGMKEVLIIMFVEWLLLLGI 555 (800)
Q Consensus 481 ~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~l~~-----~~~gi~~~li~m~i~~ilyllL 555 (800)
+.... +......++++|+.+++.|+..+..++..+. |++|+++.. +...++..++||++++++|++|
T Consensus 782 -~~~~~--~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~-----G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL 853 (2272)
T TIGR01257 782 -WQDRM--TADLKTAVSLLSPVAFGFGTEYLVRFEEQGL-----GLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLL 853 (2272)
T ss_pred -ccccc--CHHHHHHHHhcCHHHHHHHHHHHHHHhhhCC-----CcccccccccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11112 2223345679999999999999988876543 789998753 3345788999999999999999
Q ss_pred HHHHHhhcCCCCC-CCccccccc--ccccccCCCCCCCCCCCCccc-ccccCCCchhH-H-HHHHHhhhcCCCCCCcEEE
Q 003716 556 AYYVDKILSSGGA-KGPLYFLQN--FKKKSRSSFRKPSLGRQDSKV-FVSMEKPDVTQ-E-RERVEQLLLEPGTSHAIIS 629 (800)
Q Consensus 556 ~~yld~v~~~~~g-k~p~ffl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dv~~-E-~~~v~~~~~~~~~~~~i~i 629 (800)
+||+|+|+|+++| ++||||+.. ++........+.......... ..+.++++..+ . .+..++ ........|++
T Consensus 854 ~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I 931 (2272)
T TIGR01257 854 AWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCV 931 (2272)
T ss_pred HHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccccccccccccccccccccccccccccccc--ccCCCCceEEE
Confidence 9999999999999 778887631 221100000000000000000 00111111000 0 000111 11123457999
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy 709 (800)
+||+|.|++. ++.||+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++..+..++|+.+||
T Consensus 932 ~nLsK~y~~~----~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 932 KNLVKIFEPS----GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EeEEEEecCC----CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 9999999631 367999999999999999999999999999999999999999999999999997777778889999
Q ss_pred ecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 710 cpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
|||++.+++.+||+||+.++++++|.+.++.+++++++++.+||. +++|+++++|||||||||+||+||+++|+|+||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999998887777778899999999997 478999999999999999999999999999999
Q ss_pred c--------cCCcccccC
Q 003716 790 L--------SSNRFFSDY 799 (800)
Q Consensus 790 D--------~~~~~~~~~ 799 (800)
| .+.|-+||.
T Consensus 1086 DEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred ECCCcCCCHHHHHHHHHH
Confidence 9 666777663
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=320.68 Aligned_cols=159 Identities=30% Similarity=0.407 Sum_probs=152.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++|++|.|++ +.||+|+||+|++||+++++||+||||||++|||.++++||+|+|+|+|+++.+ +..+.|
T Consensus 1 MI~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 5789999999974 679999999999999999999999999999999999999999999999999976 567899
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
++|||+-|...|||++||.||+.+.-.++|.++++++++++++|+.+||.+.+++++++++|||||+||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 155 ~ilLMD 160 (309)
T COG1125 155 PILLMD 160 (309)
T ss_pred CeEeec
Confidence 999999
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=310.30 Aligned_cols=157 Identities=30% Similarity=0.442 Sum_probs=147.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~ 703 (800)
+|+++||+|.|++ ..+|+|||++|++||+++|+||+|||||||+|+|.|+++|++|+|.++|.++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6899999999974 689999999999999999999999999999999999999999999999988753 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
|+++|+|||+..|||++||.||+.+.. ..++.++++.++.+.++|+++||. +++|.++.+||||||||++|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999998753 568899999999999999999998 48999999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|+|
T Consensus 154 ~P~vmLFD 161 (240)
T COG1126 154 DPKVMLFD 161 (240)
T ss_pred CCCEEeec
Confidence 99999999
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.01 Aligned_cols=158 Identities=30% Similarity=0.495 Sum_probs=152.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++++.+|+|+|+. ...|++||||++++||++||+|+|||||||++|||++++.|++|.|+++|.|...+...+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5789999999985 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+||+.+....+|..||++|||.|++++.|+.+.+++.+++++.+.++|. +++|+++++||.||||||+|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999998899999999999999999999999999999999999999997 59999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 154 i~vlD 158 (245)
T COG4555 154 ILVLD 158 (245)
T ss_pred eEEEc
Confidence 99999
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=321.11 Aligned_cols=162 Identities=31% Similarity=0.485 Sum_probs=151.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~~ 701 (800)
+|++++++|.|+.. +++...||+||||+|++||++|++|++|||||||+|++.++.+|++|+|.++|+++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58899999999864 3345789999999999999999999999999999999999999999999999999864 456
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.|++||++|||..|+...||.||+.|...+.|.+++++++++.++|+.+||. +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999998 5899999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|+|.|
T Consensus 158 ~~P~iLL~D 166 (339)
T COG1135 158 NNPKILLCD 166 (339)
T ss_pred cCCCEEEec
Confidence 999999999
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=328.43 Aligned_cols=157 Identities=26% Similarity=0.434 Sum_probs=147.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||+|.|++ ..||+++||+|++||+++|+||||||||||||||+|+++||+|+|+|+|.++.. ....+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~-l~P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD-LPPEK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhH
Confidence 36899999999974 229999999999999999999999999999999999999999999999999975 23345
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
|.||+|||+.+|||+|||+||+.|..++++.++++++++|++.++.++|.+ ++|+++.+|||||||||++||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~--lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh--HHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999984 999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 153 ~v~L~D 158 (338)
T COG3839 153 KVFLLD 158 (338)
T ss_pred CEEEec
Confidence 999999
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=323.70 Aligned_cols=159 Identities=39% Similarity=0.645 Sum_probs=148.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..+.++||+|.|++ .+.||+||||+|++||++||+||||||||||+|||+|+++|++|+|.++|+++..+..+++
T Consensus 3 ~~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~ 77 (293)
T COG1131 3 EVIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77 (293)
T ss_pred ceeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHH
Confidence 35788999999973 2679999999999999999999999999999999999999999999999999987777889
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
++|||+||++.+++.||++|+|.|++++++.+....+++++++++.++|.+ ..++++++||+||||||+||+||+++|
T Consensus 78 ~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred hheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998876666789999999999974 568999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 156 ~lliLD 161 (293)
T COG1131 156 ELLILD 161 (293)
T ss_pred CEEEEC
Confidence 999999
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=327.57 Aligned_cols=157 Identities=32% Similarity=0.488 Sum_probs=145.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++||+|.|++ ..||+|+||+|++||+++|||||||||||+||||+|++.|++|+|.++|+++..- ...+
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~k 76 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEK 76 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhh
Confidence 57999999999973 6899999999999999999999999999999999999999999999999999763 3346
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
|.||+|||+.+|||+|||+||+.|..++++ .++++++++++++|+.++|. ++.++++.+|||||||||++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 889999999999999999999999887554 45567889999999999997 599999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+|+|||
T Consensus 155 P~vLLLD 161 (352)
T COG3842 155 PKVLLLD 161 (352)
T ss_pred cchhhhc
Confidence 9999999
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=307.58 Aligned_cols=154 Identities=27% Similarity=0.428 Sum_probs=144.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..+.+++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+++|++|+|.++|..+.. -.
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36889999999974 679999999999999999999999999999999999999999999999998832 24
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
..+||+||++.|+|.+||+||+.+...++|.++++.+++++++|+.+||. ++.|+++++||||||||++|||||+.+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999988888888888888999999999997 5899999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 150 ~lLLlD 155 (248)
T COG1116 150 KLLLLD 155 (248)
T ss_pred CEEEEc
Confidence 999999
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=319.29 Aligned_cols=167 Identities=37% Similarity=0.569 Sum_probs=152.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+.
T Consensus 5 ~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 5 VAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 457999999999963 57999999999999999999999999999999999999999999999999997666667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+++|||+||++.+++.+|++||+.+++++++.+..+..++++++++.++|. +..++++++||||||||++||+||+++
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999888877667777899999999997 478999999999999999999999999
Q ss_pred CcEEEEc--------cCCccccc
Q 003716 784 PKVRLSL--------SSNRFFSD 798 (800)
Q Consensus 784 P~vlLLD--------~~~~~~~~ 798 (800)
|++++|| .+.+-+|+
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~ 179 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWE 179 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH
Confidence 9999999 55555554
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=298.54 Aligned_cols=158 Identities=32% Similarity=0.507 Sum_probs=142.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
..+.++||.|+|++ +.+|+++||+|++||++||+|||||||||+|.|++|+.+|++|+|.++|.||+.. ..+
T Consensus 3 ~~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 35889999999974 5799999999999999999999999999999999999999999999999999763 245
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~--~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.|..|||.||++.+|..|||+||+.....++....+ +.+.+++++|+.+++.| .+++++.+||||||||+.|||||
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHH
Confidence 677899999999999999999999987777653333 44556889999999985 89999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+.+|||
T Consensus 155 a~~P~fiLLD 164 (243)
T COG1137 155 AANPKFILLD 164 (243)
T ss_pred hcCCCEEEec
Confidence 9999999999
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=289.42 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=149.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~~ 701 (800)
+|+++|++|.|++ .+.||+||||+|++||..-|+||+||||||++|+|.+.++||+|+|.++|+|+.. +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5789999999985 2679999999999999999999999999999999999999999999999999964 445
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..|++||+++|+.-|.+++||.||+.|..++.|.+++++++++.+.|+.+||.+ .++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~--k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch--hhhcCccccCchHHHHHHHHHHHc
Confidence 678999999999999999999999999999999999999999999999999984 789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|.|
T Consensus 154 ~~P~vLlAD 162 (223)
T COG2884 154 NQPAVLLAD 162 (223)
T ss_pred cCCCeEeec
Confidence 999999999
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=295.50 Aligned_cols=161 Identities=27% Similarity=0.414 Sum_probs=142.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++||+|.|+.... ...||+++||+|++||+++|+||+||||||||++|.|+.+||+|.|+++|+++... ..+
T Consensus 2 i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 678999999975322 36899999999999999999999999999999999999999999999999999642 233
Q ss_pred h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
. +++|||++|+..|.+++|++||+.+...+.+.+..+.+++++++++.+||.+ ...++++.+|||||||||+|||||+
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHHh
Confidence 3 4679999999999999999999999877877766567888999999999974 3444899999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++||.|
T Consensus 159 ~~P~iilAD 167 (226)
T COG1136 159 NNPKIILAD 167 (226)
T ss_pred cCCCeEEee
Confidence 999999999
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=312.67 Aligned_cols=159 Identities=38% Similarity=0.579 Sum_probs=145.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 347999999999963 57999999999999999999999999999999999999999999999999997655667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||+||++.+++.+|++||+.+++.+++....+..+.++++++.++|. +..++++++||||||||++||+||+++
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999988877766556667788999999997 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 191 P~lLiLD 197 (340)
T PRK13536 191 PQLLILD 197 (340)
T ss_pred CCEEEEE
Confidence 9999999
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=290.92 Aligned_cols=160 Identities=28% Similarity=0.456 Sum_probs=147.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----c
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~ 699 (800)
.+.|++++|+|.|++ +.+++||+|+|++||++|++||+|+|||||+|.|.|+++|++|+|+++|+++.. +
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 467999999999974 689999999999999999999999999999999999999999999999999864 3
Q ss_pred HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 700 ~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..++|+++|+++|+.+||..|||+||+.|..+- ..++++.+++.+..-|+.+||.. ...++.+.+|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 446789999999999999999999999986543 46788899999999999999974 4589999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
|++.||+++++|
T Consensus 159 AialdPell~~D 170 (263)
T COG1127 159 AIALDPELLFLD 170 (263)
T ss_pred HHhcCCCEEEec
Confidence 999999999999
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=306.17 Aligned_cols=157 Identities=32% Similarity=0.495 Sum_probs=145.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4789999999963 5799999999999999999999999999999999999999999999999998765556788
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+++.+++.+.++..++++++++.++|. +..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR--PEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888776666677899999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 154 lliLD 158 (301)
T TIGR03522 154 VLILD 158 (301)
T ss_pred EEEEc
Confidence 99999
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=290.98 Aligned_cols=154 Identities=27% Similarity=0.495 Sum_probs=147.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++++++|+|+|++ +.||+|+||+|++||++|+||+|||||||+||||.|+++||+|+|.++|.++.. .++.
T Consensus 2 ~L~ie~vtK~Fg~------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccCc------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 6899999999974 789999999999999999999999999999999999999999999999999864 4567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+|||.|.+-.|++.+||.|.|.|+|+++|++.++++++++.+|+++++. ++..+++.+||.||+||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999997 58999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 151 LlILD 155 (300)
T COG4152 151 LLILD 155 (300)
T ss_pred EEEec
Confidence 99999
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=305.00 Aligned_cols=161 Identities=30% Similarity=0.401 Sum_probs=144.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+|+++||+|.|++.+ ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999996421 135799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..|++|||+||+..+++.+|++||+.+.....+.++++.++++.++++.+||. +..|+++.+||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999876666777777788899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~P~iLLlD 165 (343)
T TIGR02314 157 SNPKVLLCD 165 (343)
T ss_pred hCCCEEEEe
Confidence 999999999
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=290.87 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=133.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||++.|++ .+||+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.+.|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 46899999999974 269999999999999999999999999999999999999999999999998764322 4
Q ss_pred cceEEecCCC---CCCCCCCHHHHHHHHh--hhc--CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 705 TSMGVCPQED---LLWETLTGREHLLFYG--RLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 705 ~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk--g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.+|||+||.. .-|| +||+|-+.+.. +.. +...++.+++++++|+++|+. +++|+++++|||||+||+.||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6799999964 3344 69999998742 211 122344578999999999998 599999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 152 RAL~~~p~lllLD 164 (254)
T COG1121 152 RALAQNPDLLLLD 164 (254)
T ss_pred HHhccCCCEEEec
Confidence 9999999999999
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=293.07 Aligned_cols=157 Identities=29% Similarity=0.399 Sum_probs=140.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++||+..|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ...++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5889999999974 689999999999999999999999999999999999999999999999999976 556677
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.+||+||.....+.+||+|-+.+...- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999999888899999988874221 1223455566899999999997 499999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+++|+|+|||
T Consensus 154 aQ~~~iLLLD 163 (258)
T COG1120 154 AQETPILLLD 163 (258)
T ss_pred hcCCCEEEeC
Confidence 9999999999
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=305.06 Aligned_cols=157 Identities=25% Similarity=0.432 Sum_probs=144.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~-~~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR-SIQQ 77 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-CHHH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999998643 2345
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.|||+||+..+|+++|++||+.|..+.++.++++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999887777777777888999999999997 4889999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 156 ~lLLLD 161 (351)
T PRK11432 156 KVLLFD 161 (351)
T ss_pred CEEEEc
Confidence 999999
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=283.94 Aligned_cols=159 Identities=28% Similarity=0.457 Sum_probs=143.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~ 700 (800)
.+|+++||+|+|++ .+.||++|||+|++||+++|+|++|||||||||+|.|+.+|++|+|.++|.++.. +.
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47899999999974 3789999999999999999999999999999999999999999999999999854 45
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHh--------hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~--------~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
.++|++|||++|+..|.+.++|.||+..+. .+-|+..++.+..+-++|+++|+. +++-+++++|||||+|
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 677899999999999999999999998642 223556667778889999999997 4899999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+|||||+.+|+|+|.|
T Consensus 155 RVaIARaL~Q~pkiILAD 172 (258)
T COG3638 155 RVAIARALVQQPKIILAD 172 (258)
T ss_pred HHHHHHHHhcCCCEEecC
Confidence 999999999999999999
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=304.45 Aligned_cols=157 Identities=30% Similarity=0.444 Sum_probs=144.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHH
Confidence 36899999999963 56999999999999999999999999999999999999999999999999986432 246
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||+..+|+++||+||+.|..+.++.++.+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999877766777777788999999999997 4899999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 154 ~llLLD 159 (353)
T TIGR03265 154 GLLLLD 159 (353)
T ss_pred CEEEEc
Confidence 999999
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=283.88 Aligned_cols=161 Identities=33% Similarity=0.554 Sum_probs=143.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|+++. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 378999999997521 112699999999999999999999999999999999999999999999999998755555678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++++++||||||||+++|+||+.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666665566677899999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 157 illlD 161 (218)
T cd03266 157 VLLLD 161 (218)
T ss_pred EEEEc
Confidence 99999
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=298.26 Aligned_cols=158 Identities=37% Similarity=0.546 Sum_probs=143.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46899999999963 569999999999999999999999999999999999999999999999999865545567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+++..++.+..+..++++++++.++|. +..++++++||||||||++||+||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999877666655555667788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 155 ~lllLD 160 (303)
T TIGR01288 155 QLLILD 160 (303)
T ss_pred CEEEEe
Confidence 999999
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=283.10 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=140.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|+++.|++. .+.+++++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999988531 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++...++.+++++++++.++|. +..++++.+||||||||+++|+||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999866555555555667889999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 155 ~~p~llllD 163 (216)
T TIGR00960 155 HKPPLLLAD 163 (216)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=294.68 Aligned_cols=156 Identities=29% Similarity=0.461 Sum_probs=140.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe---ecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~---~i~~~~~~ 702 (800)
+|++++++|.|+. ..|++||+++|+.||.++|+||||||||||+++|+|++.|++|+|.++|. |.+. ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 5889999999974 67999999999999999999999999999999999999999999999999 5544 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..++||+++||.+||++|||.||+.|..+.+. .++.+++.+++++|+.++|+ ...++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 34689999999999999999999999876653 23567888999999999997 599999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+|||||
T Consensus 153 A~eP~vLLLD 162 (345)
T COG1118 153 AVEPKVLLLD 162 (345)
T ss_pred hcCCCeEeec
Confidence 9999999999
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=283.97 Aligned_cols=156 Identities=39% Similarity=0.569 Sum_probs=140.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.....+.++.
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886544456678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||++||+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555667889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 153 lllD 156 (220)
T cd03265 153 LFLD 156 (220)
T ss_pred EEEc
Confidence 9999
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=304.38 Aligned_cols=157 Identities=23% Similarity=0.447 Sum_probs=142.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|+++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHC
Confidence 5899999999942 256999999999999999999999999999999999999999999999999986432 2347
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.|||+||+..+|+++||+||+.+..+.++.++.+.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877766666677778899999999997 48999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 155 llLLD 159 (356)
T PRK11650 155 VFLFD 159 (356)
T ss_pred EEEEe
Confidence 99999
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=300.94 Aligned_cols=144 Identities=44% Similarity=0.649 Sum_probs=133.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....+.++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655566788999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.+++++++.+..+.+++++++++.++|. +..++++++|||||||||+||+||+++|+++|||
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999988887776666677899999999997 4789999999999999999999999999999999
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=329.15 Aligned_cols=159 Identities=25% Similarity=0.347 Sum_probs=139.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~ 701 (800)
..++++||++.|+.+. .++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|+++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3578999999996432 24679999999999999999999999999999999999998 789999999999853
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC----CCChhHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 774 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~----~LSGG~KrRL 774 (800)
+.++.+|||||++.+++.+||+|+|.+.+.++. .+.++..++++++++.++|. +.+|+.++ +|||||||||
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 457889999999999999999999999887663 34455667899999999997 47888887 7999999999
Q ss_pred HHHHHHcCCCc-EEEEc
Q 003716 775 SVAISLIGNPK-VRLSL 790 (800)
Q Consensus 775 siA~ALig~P~-vlLLD 790 (800)
+||+||+.+|+ |+|||
T Consensus 911 ~Ia~aL~~~P~~iLlLD 927 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLD 927 (1394)
T ss_pred HHHHHHHcCCCeEEEEc
Confidence 99999999997 99999
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=283.69 Aligned_cols=156 Identities=31% Similarity=0.516 Sum_probs=137.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+..... +.+.++..++++++++.++|. +..++++++|||||||||+||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999998764432 344455667889999999996 4779999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~p~llllD 161 (235)
T cd03261 153 LDPELLLYD 161 (235)
T ss_pred cCCCEEEec
Confidence 999999999
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=283.85 Aligned_cols=158 Identities=32% Similarity=0.395 Sum_probs=140.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH--HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~--~~ 702 (800)
..+++++|+|+|++ .+||+|+||+|++||++||+|||||||||++|+|+|.++|++|+|.++|++|.... ..
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 35789999999985 68999999999999999999999999999999999999999999999999997532 34
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-------C-----CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-------N-----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-------g-----~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
.|..|+--||...+|++|||.||+......+ + ...++..+++.++|+.+||. +.+|.++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 5677888999999999999999998753322 1 13467788899999999998 48999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||.|||||+.+|++|+||
T Consensus 155 qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 155 QRRLEIARALATQPKLLLLD 174 (250)
T ss_pred hHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=300.88 Aligned_cols=156 Identities=25% Similarity=0.398 Sum_probs=142.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--ceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts--G~I~i~G~~i~~~~~~~ 703 (800)
.|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.... ..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PH 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HH
Confidence 5889999999963 469999999999999999999999999999999999999999 99999999985422 24
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||++|+..+|+++||+||+.|..+.++.+..+.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999877766777777788899999999997 489999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 156 P~llLLD 162 (362)
T TIGR03258 156 PDVLLLD 162 (362)
T ss_pred CCEEEEc
Confidence 9999999
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=279.70 Aligned_cols=160 Identities=30% Similarity=0.413 Sum_probs=138.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH----HH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----DR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~----~~ 702 (800)
|+++||++.|++.+ ..+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999996421 1156999999999999999999999999999999999999999999999999885421 12
Q ss_pred -hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 -~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3467999999999999999999999866655554445567889999999997 4679999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~lllLD 165 (218)
T cd03255 157 NDPKIILAD 165 (218)
T ss_pred cCCCEEEEc
Confidence 999999999
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=278.63 Aligned_cols=155 Identities=29% Similarity=0.462 Sum_probs=137.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV-PPERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-chhhcc
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 224568
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+.....+....+.+++++++++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765544444455567789999999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (213)
T cd03259 152 LLLD 155 (213)
T ss_pred EEEc
Confidence 9999
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=300.80 Aligned_cols=158 Identities=27% Similarity=0.433 Sum_probs=144.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++|++|.|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHH
Confidence 347999999999963 4699999999999999999999999999999999999999999999999998642 234
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||+||+..+|+++||+||+.+..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999876666666677788899999999997 488999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 168 P~lLLLD 174 (377)
T PRK11607 168 PKLLLLD 174 (377)
T ss_pred CCEEEEe
Confidence 9999999
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-32 Score=278.89 Aligned_cols=158 Identities=50% Similarity=0.719 Sum_probs=140.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++. .+++++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+.++.
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999631 256999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.+..+..++++++++.++|. +..++++.+||||||||++||+||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655555567789999999996 478899999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 155 lllD 158 (220)
T cd03263 155 LLLD 158 (220)
T ss_pred EEEC
Confidence 9999
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-32 Score=276.82 Aligned_cols=158 Identities=27% Similarity=0.406 Sum_probs=139.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24699999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++......+++++++++.+++. +..++++.+||||||||++||+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999876555554455667889999999997 4778999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~lllLD 162 (214)
T TIGR02673 154 NSPPLLLAD 162 (214)
T ss_pred CCCCEEEEe
Confidence 999999999
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-32 Score=300.34 Aligned_cols=158 Identities=28% Similarity=0.424 Sum_probs=143.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 346999999999963 56999999999999999999999999999999999999999999999999986422 23
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||+||+..+|+++||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999876666666667778899999999997 489999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 163 P~llLLD 169 (375)
T PRK09452 163 PKVLLLD 169 (375)
T ss_pred CCEEEEe
Confidence 9999999
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=278.99 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-- 701 (800)
++++++||+|.|+++. ..+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 4689999999997421 124699999999999999999999999999999999999999999999999998642 11
Q ss_pred -Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 -~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+. ++.+||+||++.+++.+|++||+.+.....+...++.+++++++++.++|. +..++++.+||||||||+++|+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 22 367999999999999999999998865544544555667889999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 160 l~~~p~lllLD 170 (233)
T PRK11629 160 LVNNPRLVLAD 170 (233)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=276.98 Aligned_cols=158 Identities=29% Similarity=0.417 Sum_probs=135.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++||+..|+. .+||++|||++++|||++|+|+||||||||+|.|+|+.+|.+|+|.++|+||+.. .+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47899999999974 6899999999999999999999999999999999999999999999999999753 355
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
+|..|+||||...+|+.|||+|||.+.+..+.- +...+..++++.+.+---+ +.+++++++|||||||.|+|||||+.
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lk-er~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLK-ERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHH-HHhcCcccCCChHHHHHHHHHHHHhc
Confidence 778899999999999999999999986544321 1111222667777664322 58899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 154 ~PklLLLD 161 (237)
T COG0410 154 RPKLLLLD 161 (237)
T ss_pred CCCEEEec
Confidence 99999999
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=296.98 Aligned_cols=156 Identities=28% Similarity=0.434 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.|+++||+|.|++ +.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHC
Confidence 4889999999963 5699999999999999999999999999999999999999999999999998642 23457
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||+..+++++|++||+.+..+.. +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999865542 344556678899999999997 4889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~P~llLLD 161 (353)
T PRK10851 153 VEPQILLLD 161 (353)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=275.66 Aligned_cols=153 Identities=28% Similarity=0.490 Sum_probs=138.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 469999999999999999999999999999999999999999999999998753 35678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++.+..+.++.++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666665566677889999999996 478899999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (210)
T cd03269 150 LILD 153 (210)
T ss_pred EEEe
Confidence 9999
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=277.02 Aligned_cols=156 Identities=29% Similarity=0.422 Sum_probs=137.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++.. ..+.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999996421 12579999999999999999999999999999999999999999999999998852 3567
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.+.++..+.++++++.++|. +..++++++||||||||++||+||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998866555555555567889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 153 llLD 156 (220)
T cd03293 153 LLLD 156 (220)
T ss_pred EEEC
Confidence 9999
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=274.69 Aligned_cols=157 Identities=25% Similarity=0.391 Sum_probs=138.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++|+++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 14699999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++++||||||||++||+||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999876555555555667889999999996 47799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 154 ~p~llllD 161 (214)
T cd03292 154 SPTILIAD 161 (214)
T ss_pred CCCEEEEe
Confidence 99999999
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=297.95 Aligned_cols=156 Identities=24% Similarity=0.399 Sum_probs=141.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHC
Confidence 5899999999963 56999999999999999999999999999999999999999999999999986422 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.|||+||+..+++.+|++||+.+....++.+.++.+++++++++.++|. +..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999999876666666666778899999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 154 lLLLD 158 (369)
T PRK11000 154 VFLLD 158 (369)
T ss_pred EEEEe
Confidence 99999
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=294.74 Aligned_cols=161 Identities=32% Similarity=0.440 Sum_probs=142.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+|+++||+|.|++.+ ..+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999997311 135799999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.|||+||++.+++.+|++||+.+.....+.+..+.+++++++++.++|. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999876666666666677899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~iLlLD 165 (343)
T PRK11153 157 SNPKVLLCD 165 (343)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=278.61 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=139.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 3789999999963 5699999999999999999999999999999999999999999999999988643333456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++++||||||||++||+||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999998876665555555567789999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 153 llllD 157 (236)
T TIGR03864 153 LLLLD 157 (236)
T ss_pred EEEEc
Confidence 99999
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=275.03 Aligned_cols=155 Identities=25% Similarity=0.425 Sum_probs=137.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999964 46999999999999999999999999999999999999999999999999985421 22467
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++++||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876655555556677889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (213)
T cd03301 152 FLMD 155 (213)
T ss_pred EEEc
Confidence 9999
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-32 Score=270.93 Aligned_cols=160 Identities=26% Similarity=0.395 Sum_probs=146.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----ceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-----G~I~i~G~~i~~ 698 (800)
...++++||++.|++ +.||+|||++|+++++++|+||+||||||+||++..+....+ |+|.++|++|..
T Consensus 5 ~~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 356899999999974 689999999999999999999999999999999999987654 999999999965
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrR 773 (800)
+..++|+++|+++|.+.-|| +|++||+.+..+++|+..++.++.|++.|+...|.++ +.+++.+..|||||+||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 46788999999999999999 8999999999999999888999999999999988752 35567888999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+|||||+-+|+|||||
T Consensus 158 LcIARalAv~PeVlLmD 174 (253)
T COG1117 158 LCIARALAVKPEVLLMD 174 (253)
T ss_pred HHHHHHHhcCCcEEEec
Confidence 99999999999999999
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=274.40 Aligned_cols=155 Identities=37% Similarity=0.597 Sum_probs=138.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886433456788
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555667889999999996 477999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 152 lllD 155 (211)
T cd03264 152 LIVD 155 (211)
T ss_pred EEEc
Confidence 9999
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=277.51 Aligned_cols=161 Identities=31% Similarity=0.424 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H---H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~---~ 701 (800)
+|+++|+++.|+++. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 378999999997421 013799999999999999999999999999999999999999999999999998642 1 2
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++.+||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998765555555555567889999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 157 ~~p~lllLD 165 (233)
T cd03258 157 NNPKVLLCD 165 (233)
T ss_pred cCCCEEEec
Confidence 999999999
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=274.75 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=138.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 3789999999942 24699999999999999999999999999999999999999999999999988541 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++...++..++++++++.+++. +..++.+++||||||||+++|+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35678999999999989999999998866555555555566788999999997 3689999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (222)
T PRK10908 154 NKPAVLLAD 162 (222)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=276.98 Aligned_cols=156 Identities=35% Similarity=0.543 Sum_probs=137.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
++++|++|.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999988542 222 34
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+....++....+..+.++++++.+++. +..++.+++||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999998865555544445566788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 153 ~llllD 158 (232)
T cd03218 153 KFLLLD 158 (232)
T ss_pred CEEEec
Confidence 999999
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=273.61 Aligned_cols=160 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH---H
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~---~ 702 (800)
++++|+++.|++.. ..+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 68999999996421 125699999999999999999999999999999999999999999999999998542 11 2
Q ss_pred hh-cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r-~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+ +.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++. +..++++++||||||||+++|+||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 23 67999999999999999999998755444444444566788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 158 ~~p~illlD 166 (221)
T TIGR02211 158 NQPSLVLAD 166 (221)
T ss_pred CCCCEEEEe
Confidence 999999999
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=271.44 Aligned_cols=154 Identities=29% Similarity=0.397 Sum_probs=138.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999963 4699999999999999999999999999999999999999999999999998654455677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+++|++|++.+++.+|++||+.+....++. ..++.++++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987655432 2356788999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 150 llllD 154 (204)
T PRK13538 150 LWILD 154 (204)
T ss_pred EEEEe
Confidence 99999
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=277.32 Aligned_cols=159 Identities=31% Similarity=0.454 Sum_probs=139.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999963 1469999999999999999999999999999999999999999999999999864 3345567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+...+.+...++..+.++++++.+++.+..+.++++.+||||||||++||+||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766655544555677899999999962126799999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 156 llllD 160 (242)
T cd03295 156 LLLMD 160 (242)
T ss_pred EEEec
Confidence 99999
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=272.07 Aligned_cols=156 Identities=29% Similarity=0.428 Sum_probs=135.3
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcce
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 707 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~I 707 (800)
++|++|.|++. .+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+
T Consensus 2 ~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 68999999641 2569999999999999999999999999999999999999999999999998864 344567789
Q ss_pred EEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 708 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 708 GycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
||+||++. .++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||+++||||+.+|++
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 366789999998765544444455566789999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 156 lllD 159 (211)
T cd03225 156 LLLD 159 (211)
T ss_pred EEEc
Confidence 9999
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=277.10 Aligned_cols=156 Identities=33% Similarity=0.435 Sum_probs=136.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4789999999963 46999999999999999999999999999999999999999999999999875321 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~----~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.++|. +..++++.+|||||||||+||+||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 799999999999999999999876544332 2334456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 153 ~~p~llllD 161 (239)
T cd03296 153 VEPKVLLLD 161 (239)
T ss_pred cCCCEEEEc
Confidence 999999999
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=271.25 Aligned_cols=156 Identities=28% Similarity=0.410 Sum_probs=137.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 703 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~ 703 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999963 469999999999999999999999999999999999999999999999999853 23456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 7889999999999999999999987542 34444455567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 153 ~p~llllD 160 (213)
T cd03262 153 NPKVMLFD 160 (213)
T ss_pred CCCEEEEe
Confidence 99999999
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=271.92 Aligned_cols=151 Identities=32% Similarity=0.549 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5699999999999999999999999999999999999999999999999988643 455678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++. .+++++++++.+++. +..++++++|||||||||++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999887654442 245688899999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 148 lllD 151 (208)
T cd03268 148 LILD 151 (208)
T ss_pred EEEC
Confidence 9999
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=270.57 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=136.0
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--c---HHHh
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 703 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~---~~~~ 703 (800)
++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4689999963 469999999999999999999999999999999999999999999999999642 1 1234
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+++. +..++++.+||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999865555555556677889999999996 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 153 p~llllD 159 (206)
T TIGR03608 153 PPLILAD 159 (206)
T ss_pred CCEEEEe
Confidence 9999999
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=272.29 Aligned_cols=161 Identities=26% Similarity=0.385 Sum_probs=142.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.++.++||++.|+++.. ..+||++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|+++... .+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 46899999999986421 23699999999999999999999999999999999999999999999999887542 234
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.++.|.++|||+ .|.|..||++.|.-..+.+|.++. ++++.++|+.+||.+ +++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 567899999997 589999999999877777776544 445999999999985 799999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+-+|++++||
T Consensus 157 ~~~PklLIlD 166 (252)
T COG1124 157 IPEPKLLILD 166 (252)
T ss_pred ccCCCEEEec
Confidence 9999999999
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=282.25 Aligned_cols=163 Identities=28% Similarity=0.398 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---HHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---~~~ 702 (800)
.|+++||+|.|++..+ ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 124699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.++|...+..++++++||||||||++||+||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678999999986 344 47999999986655667777777889999999999521368999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 160 ~~~P~llllD 169 (287)
T PRK13637 160 AMEPKILILD 169 (287)
T ss_pred HcCCCEEEEE
Confidence 9999999999
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=274.79 Aligned_cols=156 Identities=33% Similarity=0.460 Sum_probs=135.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 222 34
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~----------~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.+++. +..++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999876544321 1234556789999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|+||+.+|++++||
T Consensus 153 ~la~al~~~p~llllD 168 (236)
T cd03219 153 EIARALATDPKLLLLD 168 (236)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=274.55 Aligned_cols=157 Identities=26% Similarity=0.380 Sum_probs=138.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 3789999999963 469999999999999999999999999999999999999999999999999864 2245
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+... .++....+..+.++++++.++|. +..++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 57789999999999999999999987432 23444455667789999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 153 ~~p~llllD 161 (240)
T PRK09493 153 VKPKLMLFD 161 (240)
T ss_pred cCCCEEEEc
Confidence 999999999
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=292.65 Aligned_cols=144 Identities=26% Similarity=0.357 Sum_probs=132.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh----hcceEEecCCCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~----r~~IGycpQ~~~L~~~ 719 (800)
+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ...+. ++.+|||||++.++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 579999999999999999999999999999999999999999999999999964 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|++||+.+...+.+.+.++..+++.++++.++|. .+.++++++|||||||||+|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999877777777777788999999999996 4899999999999999999999999999999999
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=293.81 Aligned_cols=164 Identities=24% Similarity=0.331 Sum_probs=141.7
Q ss_pred CcEEEEeEEEEcCCCCC------------------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 625 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~------------------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..|+++||+|.|+.... .+...+++|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46888888888875310 012358999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCcc-HHH----hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc
Q 003716 687 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (800)
Q Consensus 687 G~I~i~G~~i~~~-~~~----~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~ 761 (800)
|+|+++|+++... ... .++.+||+||+..+++.+|++||+.+....++.+.++.+++++++++.++|. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 221 2357999999999999999999999877666766666677899999999997 47899
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 762 QAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 762 ~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++||||||||++|||||+.+|+++|||
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=271.51 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=139.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-- 701 (800)
.+|+++||++.|++.. ..+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4789999999997421 013599999999999999999999999999999999999999999999999988542 11
Q ss_pred -Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 -~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+. ++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998755444544455677899999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 161 l~~~p~llllD 171 (228)
T PRK10584 161 FNGRPDVLFAD 171 (228)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=277.45 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=136.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999963 4699999999999999999999999999999999999999999999999988531 24
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+....++....+..++++++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999998765555555555567889999999996 47889999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 149 lllLD 153 (255)
T PRK11248 149 LLLLD 153 (255)
T ss_pred EEEEe
Confidence 99999
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=274.10 Aligned_cols=157 Identities=32% Similarity=0.465 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++||++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999963 14699999999999999999999999999999999999999999999999998642 334
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
.++.+||+||++.+++.+|++||+.+... +.+.......++++++++.++|. +..++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 56789999999999999999999976321 11222234456788999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+|+|||
T Consensus 154 ~la~al~~~p~llllD 169 (241)
T cd03256 154 AIARALMQQPKLILAD 169 (241)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=274.45 Aligned_cols=158 Identities=27% Similarity=0.421 Sum_probs=137.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~-- 698 (800)
+++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999963 46999999999999999999999999999999999999998 9999999999864
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.++++++.++|.+. +..++++++||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999998 9999999876555542 344556788999999999610 267899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 154 ~laral~~~p~llllD 169 (247)
T TIGR00972 154 CIARALAVEPEVLLLD 169 (247)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=271.96 Aligned_cols=155 Identities=27% Similarity=0.408 Sum_probs=134.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCcceEEECCeecCcc--
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~-----~ptsG~I~i~G~~i~~~-- 699 (800)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999963 46999999999999999999999999999999999999 99999999999998542
Q ss_pred -HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCCCcccccc--CCCCChhHHHHHH
Q 003716 700 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 775 (800)
Q Consensus 700 -~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~~~~~d~~--~~~LSGG~KrRLs 775 (800)
....++.+||+||++.++ .+|++||+.+....++... .+.+++++++++.+++.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 345577899999999888 7999999987655544332 235677899999999963 55666 5999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|++++||
T Consensus 152 la~al~~~p~llllD 166 (227)
T cd03260 152 LARALANEPEVLLLD 166 (227)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=285.77 Aligned_cols=166 Identities=25% Similarity=0.356 Sum_probs=142.4
Q ss_pred CCcEEEEeEEEEcCCCCC-------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 624 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~-------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
+..|+++||+|.|+.+.+ .+.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457999999999974221 1135799999999999999999999999999999999999999999999999998
Q ss_pred Ccc----HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCccccccCCCCCh
Q 003716 697 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768 (800)
Q Consensus 697 ~~~----~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk--g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSG 768 (800)
... ....+++|||+||++ .+++.+|+.||+.+..... +.++++.+++++++++.++|.+ +..++++++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 642 234567899999997 6889999999998754433 3555667788899999999953 478999999999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEc
Q 003716 769 GMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 769 G~KrRLsiA~ALig~P~vlLLD 790 (800)
|||||++|||||+.+|++|+||
T Consensus 165 G~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999999
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=265.89 Aligned_cols=152 Identities=27% Similarity=0.403 Sum_probs=134.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999963 57999999999999999999999999999999999999999999999999986544445678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++ .+ ++.++++++.+++. +..++++++||||||||++||+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999988765443 11 34678899999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 149 lllD 152 (198)
T TIGR01189 149 WILD 152 (198)
T ss_pred EEEe
Confidence 9999
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=292.95 Aligned_cols=158 Identities=25% Similarity=0.337 Sum_probs=139.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+|+++||+|.|++ +.+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 36899999999963 579999999999999999999999999999999999999999999999999865 44566
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g~--~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+++|||+||+..++..+|++|++.+....+ .. ...+.+++++++++.+++. +..++++.+||||||||++||||
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHH
Confidence 788999999999999999999998743211 11 1344567899999999997 48899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+++|+++|||
T Consensus 154 L~~~P~iLLLD 164 (402)
T PRK09536 154 LAQATPVLLLD 164 (402)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=279.05 Aligned_cols=159 Identities=28% Similarity=0.377 Sum_probs=138.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
+.++++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 46899999999963 2469999999999999999999999999999999999999999999999999864 33455
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+..+|++||+.+.....+....+.+++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 678999999963 344679999998765445555556677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 156 ~p~llllD 163 (274)
T PRK13647 156 DPDVIVLD 163 (274)
T ss_pred CCCEEEEE
Confidence 99999999
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=280.00 Aligned_cols=161 Identities=24% Similarity=0.361 Sum_probs=141.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++||++.|++.. .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3689999999996421 2469999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++ .++..+|++||+.+.....+...++..++++++++.++|. +..++.+.+||||||||++||+||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999997 4677789999998765555666666778899999999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 158 ~p~lLlLD 165 (279)
T PRK13650 158 RPKIIILD 165 (279)
T ss_pred CCCEEEEE
Confidence 99999999
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=274.12 Aligned_cols=158 Identities=28% Similarity=0.418 Sum_probs=134.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++||++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 3789999999962 24699999999999999999999999999999999999999999999999988531 23
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++.+||+||++.+++.+|++||+.+... +.+....+.+++++++++.++|. +..++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 356789999999999999999999975211 11122234456788999999996 47899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 154 v~la~al~~~p~llllD 170 (243)
T TIGR02315 154 VAIARALAQQPDLILAD 170 (243)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=276.98 Aligned_cols=158 Identities=23% Similarity=0.349 Sum_probs=137.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----H
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~ 700 (800)
.+|+++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 57999999999963 5699999999999999999999999999999999999999999999999988532 1
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
...++.+||+||+..+++.+|+.||+.+..... +....+.++.+.++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998753322 233444456788899999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 158 l~~~p~lllLD 168 (269)
T PRK11831 158 IALEPDLIMFD 168 (269)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=279.35 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=141.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~ 703 (800)
.+++++||++.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..+.
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 468999999999641 25699999999999999999999999999999999999999999999999998643 3445
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.|||+||++. ++..+|++||+.+.....+...++..++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 678999999973 677789999998866555656666677899999999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++||||
T Consensus 158 ~p~lllLD 165 (279)
T PRK13635 158 QPDIIILD 165 (279)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=280.86 Aligned_cols=161 Identities=23% Similarity=0.309 Sum_probs=138.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMD 701 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~~ 701 (800)
++++||+|.|++.++ ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999974221 12469999999999999999999999999999999999999999999999999852 234
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+.++.+||+||++ .+++ .|++||+.+.....+.+.++..+.++++++.++|.+ ...++++.+|||||||||+||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999986 4564 699999997655556666666778999999999963 36799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 160 L~~~P~llllD 170 (290)
T PRK13634 160 LAMEPEVLVLD 170 (290)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=281.80 Aligned_cols=158 Identities=24% Similarity=0.334 Sum_probs=138.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~ 703 (800)
+++++||+|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24599999999999999999999999999999999999999999999999998642 3456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+..+|++||+.+.....+....+..+.++++++.++|. +..++++++||||||||++||+||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999975 356689999998766555566666677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+|+|||
T Consensus 154 ~p~lllLD 161 (274)
T PRK13644 154 EPECLIFD 161 (274)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=273.27 Aligned_cols=157 Identities=27% Similarity=0.374 Sum_probs=137.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~------ 699 (800)
+++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 5899999999963 4699999999999999999999999999999999999999999999999988531
Q ss_pred ---HHHhhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ---~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++.+++.+|++||+.+... .++....+..+.++++++.++|. +..++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987432 23444445567788999999996 4679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 155 la~al~~~p~lllLD 169 (250)
T PRK11264 155 IARALAMRPEVILFD 169 (250)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=279.47 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=137.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~ 700 (800)
.|+++||+|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999974210 024699999999999999999999999999999999999999999999999998532 3
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++.+||+||++ .++ .+|++||+.+.....+...++..+.++++++.++|.+ ++.++++++||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45567899999996 355 5799999987555455555666778899999999952 3789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 al~~~p~lLlLD 170 (287)
T PRK13641 159 VMAYEPEILCLD 170 (287)
T ss_pred HHHcCCCEEEEE
Confidence 999999999999
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=273.63 Aligned_cols=145 Identities=27% Similarity=0.439 Sum_probs=128.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEec-CCCCCCCCCCH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTG 722 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycp-Q~~~L~~~LTv 722 (800)
.+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 35799999999999999999999999999999999999999999999999987544445667899998 56788889999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|++.+...+++...++..+.++++++.+++. +..++++.+||||||||+++|+||+.+|++++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998876666655556667788999999996 4789999999999999999999999999999999
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=277.45 Aligned_cols=160 Identities=25% Similarity=0.401 Sum_probs=140.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++|++|.|++. .+.+++++||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.. .....
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 33456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .++.+|++||+.+.....+...++.++.++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998765444445555666789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 160 ~p~lllLD 167 (271)
T PRK13632 160 NPEIIIFD 167 (271)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=314.55 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=136.3
Q ss_pred cEEEEeEEEEcCCCCC-------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeec
Q 003716 626 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 696 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~-------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i 696 (800)
.+..+||++..+...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999998853211 1245799999999999999999999999999999999999873 789999999886
Q ss_pred CccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCccccccC-----CCCCh
Q 003716 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 768 (800)
Q Consensus 697 ~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~-----~~LSG 768 (800)
.. ...++.+|||+|+|.+++.+||+|+|.+.+.++ ..+.++..+.++++++.++|. +.+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~--~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD--NLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh--hHhCCccCCCCCCCcCH
Confidence 42 234677999999999999999999999977654 233345566799999999997 3678876 58999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEc
Q 003716 769 GMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 769 G~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||+||++|+.+|+|+|||
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LD 1044 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMD 1044 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEe
Confidence 9999999999999999999999
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=277.97 Aligned_cols=164 Identities=26% Similarity=0.367 Sum_probs=141.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~ 701 (800)
+++++++|++|.|++..+...+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 3579999999999742211135699999999999999999999999999999999999999999999999998642 34
Q ss_pred HhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 ~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+.++.+||+||++. ++ ..|+.|++.+.....+.+..+.+++++++++.++|. ++.++++++||||||||++||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999974 44 469999998866555666666677899999999996 48899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 159 l~~~p~llllD 169 (280)
T PRK13633 159 LAMRPECIIFD 169 (280)
T ss_pred HHcCCCEEEEe
Confidence 99999999999
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=267.46 Aligned_cols=149 Identities=28% Similarity=0.399 Sum_probs=128.9
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG 708 (800)
++|++|.|++ .+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+|
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIG 74 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceE
Confidence 6799999963 1469999999999999999999999999999999999999999999999998853 34567899
Q ss_pred EecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEE
Q 003716 709 VCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787 (800)
Q Consensus 709 ycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vl 787 (800)
|+||++. .+..+|++||+.+.....+ ...++++++++.++|. +..++++++||||||||+++||||+.+|+++
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999974 2345799999987654332 1235788999999997 4789999999999999999999999999999
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
|||
T Consensus 149 llD 151 (205)
T cd03226 149 IFD 151 (205)
T ss_pred EEe
Confidence 999
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=268.48 Aligned_cols=154 Identities=29% Similarity=0.417 Sum_probs=133.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
|+++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999988542 222 35
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l-~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++.+++.+|++||+.+.....+ ..+..+.++++++.+ ++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999988655443 233455677888888 465 467999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 151 p~llllD 157 (222)
T cd03224 151 PKLLLLD 157 (222)
T ss_pred CCEEEEC
Confidence 9999999
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=272.92 Aligned_cols=158 Identities=31% Similarity=0.469 Sum_probs=146.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
.+++++++++.|+++ +.+++++|++|++||+++|+||||||||||+++|+|+++|++|.|.++|.++. ....+
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368899999999752 57999999999999999999999999999999999999999999999999987 45677
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+++++||++|++ .++.. ||.|.+.|...-.|++.++++++++++++.+++.+ ++++.+.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~--~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEE--LLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh--hccCCccccCCcceeeHHhhHHH
Confidence 899999999996 56655 99999999888889999899999999999999984 79999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 154 a~~P~iliLD 163 (235)
T COG1122 154 AMGPEILLLD 163 (235)
T ss_pred HcCCCEEEEc
Confidence 9999999999
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=271.77 Aligned_cols=157 Identities=31% Similarity=0.492 Sum_probs=137.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~ 703 (800)
+++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++... .+..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 5889999999963 4699999999999999999999999999999999999999999999999998542 2334
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+....+ +...++.++.++++++.+++. +..++++++||||||||+++|+||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998765443 233345566789999999996 46799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 155 ~p~llllD 162 (241)
T PRK10895 155 NPKFILLD 162 (241)
T ss_pred CCCEEEEc
Confidence 99999999
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=270.86 Aligned_cols=157 Identities=26% Similarity=0.388 Sum_probs=137.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------- 698 (800)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5789999999963 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~-~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.....++.+||+||++.+++.+|++||+.+ .....+....+..+.++++++.+|+. +..++++.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 123456789999999999999999999975 33344544455567789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|++++||
T Consensus 154 ral~~~p~llilD 166 (242)
T PRK11124 154 RALMMEPQVLLFD 166 (242)
T ss_pred HHHhcCCCEEEEc
Confidence 9999999999999
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=278.17 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=139.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
+|+++|+++.|++.. ...+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNS-PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 478999999997421 112369999999999999999999999999999999999999999999999999842 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+.++.+||++|++ .+++ .|+.|++.+.....+.+..+.++++.++++.++|.+ ++.++.+.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678899999986 5666 599999997665556666677788999999999952 3679999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 158 aL~~~p~illLD 169 (288)
T PRK13643 158 ILAMEPEVLVLD 169 (288)
T ss_pred HHHhCCCEEEEE
Confidence 999999999999
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=278.24 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=139.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
.++++||+|.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3789999999964211 12469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..+++.|||+||++ .+++ .|++||+.+.....+....+..+.++++++.+||.. +..++++.+||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999985 4665 499999987655556666677788999999999952 3678999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 aL~~~p~illlD 170 (286)
T PRK13646 159 ILAMNPDIIVLD 170 (286)
T ss_pred HHHhCCCEEEEE
Confidence 999999999999
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=267.59 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=133.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~----~ 701 (800)
+++++||++.|+++. ....+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999996421 1136999999999999999999999999999999999999999999999999986422 3
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCc-hhHHHH-HHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKG-PALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~-v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
..++.+||+||++ .+++.+|++||+.+.....+... .+..+. ++++++.+++.+ ...++++.+||||||||+++|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 4567899999998 57778999999987544433222 222222 368899999952 367999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|+++|||
T Consensus 158 ral~~~p~lllLD 170 (228)
T cd03257 158 RALALNPKLLIAD 170 (228)
T ss_pred HHHhcCCCEEEec
Confidence 9999999999999
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=265.27 Aligned_cols=150 Identities=27% Similarity=0.412 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999963 46999999999999999999999999999999999999999999999999986544556788
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++.... .+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998864211 245788999999997 367999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 147 lllD 150 (201)
T cd03231 147 WILD 150 (201)
T ss_pred EEEe
Confidence 9999
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=262.99 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=134.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 3789999999963 4699999999999999999999999999999999999999999999999998655456678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
++||+||+..+++.+|++||+.+..... . .+..++++++.+++. +..++++++||||||||+++|+|++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLE--HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCc--hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998753221 1 134688999999996 36789999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 148 ~lilD 152 (200)
T PRK13540 148 LWLLD 152 (200)
T ss_pred EEEEe
Confidence 99999
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=269.68 Aligned_cols=157 Identities=30% Similarity=0.372 Sum_probs=135.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH-Hh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-~~ 703 (800)
+|+++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5889999999963 4699999999999999999999999999999999999999999999999988542 22 23
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--------g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 457999999999999999999998754321 112234566789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+|+||+.+|++++||
T Consensus 154 laral~~~p~~lllD 168 (242)
T TIGR03411 154 IGMLLMQDPKLLLLD 168 (242)
T ss_pred HHHHHhcCCCEEEec
Confidence 999999999999999
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=270.66 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=137.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 46899999999963 4699999999999999999999999999999999999987 49999999999852
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
...+.++.+||+||++.+++.+|+.||+.+....++. +.++..+.++++++.+++.+ ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2335677899999999999999999999876544432 23445567889999999842 12578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|++++||
T Consensus 157 rv~laral~~~p~llllD 174 (253)
T PRK14267 157 RLVIARALAMKPKILLMD 174 (253)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999999999999999
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=280.32 Aligned_cols=165 Identities=22% Similarity=0.318 Sum_probs=141.4
Q ss_pred CcEEEEeEEEEcCCCCC----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-
Q 003716 625 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~- 699 (800)
..|+++||+|.|+.+.+ ...+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47899999999974321 0135799999999999999999999999999999999999999999999999998542
Q ss_pred ---HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 700 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 700 ---~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
....|++|||+||++ .|.+.+|+.+++....+.+ +..+.+..+++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234577899999997 6899999999987644443 4455566778999999999963 46799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++|++|
T Consensus 163 v~iArAL~~~P~lLilD 179 (327)
T PRK11308 163 IAIARALMLDPDVVVAD 179 (327)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 99999999999999999
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=277.07 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=135.7
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH---h
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---I 703 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~---~ 703 (800)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 45789999964 5799999999999999999999999999999999999999999999999988542 111 2
Q ss_pred -hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 -r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+....++....+..++++++++.++|. +..++++++||||||||++||+||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999998865555554455567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 178 ~p~illLD 185 (269)
T cd03294 178 DPDILLMD 185 (269)
T ss_pred CCCEEEEc
Confidence 99999999
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=270.53 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=138.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
..++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 46899999999963 569999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 699 --------~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+++.+ ...++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12345678999999999999999999998633 3334444556778899999999963 2248899999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
||||++||+||+.+|++++||
T Consensus 157 ~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999999
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=269.60 Aligned_cols=159 Identities=26% Similarity=0.378 Sum_probs=137.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-c
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-~ 699 (800)
.++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999963 4699999999999999999999999999999999999974 79999999999854 3
Q ss_pred HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHH
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.++|.+ .+..++.+.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445677899999999989999999999876544332 23445667899999999852 12578999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 157 laral~~~p~lllLD 171 (250)
T PRK14247 157 IARALAFQPEVLLAD 171 (250)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=266.83 Aligned_cols=150 Identities=29% Similarity=0.463 Sum_probs=129.1
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG 708 (800)
++||+|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++.+|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6799999963 46999999999999999999999999999999999999999999999998774 3567899
Q ss_pred EecCCCCCCC--CCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 709 VCPQEDLLWE--TLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 709 ycpQ~~~L~~--~LTv~E~L~~~~~lkg----~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
|+||++.+.+ .+|++||+.+.....+ ...++.+++++++++.+++. +..++++.+||||||||++||+||+.
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999987642 3799999987432211 12234566789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 150 ~p~llllD 157 (213)
T cd03235 150 DPDLLLLD 157 (213)
T ss_pred CCCEEEEe
Confidence 99999999
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=275.06 Aligned_cols=159 Identities=25% Similarity=0.324 Sum_probs=138.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~ 701 (800)
.+|+++|+++.|++ .+.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 47899999999963 2469999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.++.+||+||++. .+...|++||+.+.....+.+..+..++++++++.++|. +..++++.+||||||||++||+||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 56788999999963 234579999998755444556666667899999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 157 ~~~p~lLilD 166 (283)
T PRK13636 157 VMEPKVLVLD 166 (283)
T ss_pred HcCCCEEEEe
Confidence 9999999999
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=273.98 Aligned_cols=159 Identities=26% Similarity=0.375 Sum_probs=138.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
++++++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36889999999963 2359999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+...|++||+.+.....+...++.++.++++++.++|. +..++.+++||||||||++||+||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999973 233579999998755444555556667889999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 155 ~p~llilD 162 (277)
T PRK13652 155 EPQVLVLD 162 (277)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=279.75 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=139.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---- 699 (800)
..+|+++|+++.|++.. ...+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus 19 ~~~l~~~nl~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ-ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 35799999999997421 1124699999999999999999999999999999999999999999999999987532
Q ss_pred -------------HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCC
Q 003716 700 -------------MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764 (800)
Q Consensus 700 -------------~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~ 764 (800)
....++.+||++|++ .+++. |++||+.+.....+.+.++..++++++++.++|.+ ...++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCcc
Confidence 345678899999986 56764 99999987544445555666778899999999952 37899999
Q ss_pred CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 765 KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 765 ~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+||||||||++|||||+.+|+++|||
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=273.92 Aligned_cols=162 Identities=23% Similarity=0.294 Sum_probs=137.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
.|+++||++.|+++.. ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4789999999974210 01469999999999999999999999999999999999999999999999998853 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++.|||+||++ .+++ .|++||+.+.....+...++..+.++++++.++|.+ ...++++.+||||||||++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45677899999996 4565 699999987655455555556677889999999962 3679999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 al~~~p~lllLD 170 (280)
T PRK13649 159 ILAMEPKILVLD 170 (280)
T ss_pred HHHcCCCEEEEe
Confidence 999999999999
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=271.23 Aligned_cols=157 Identities=27% Similarity=0.351 Sum_probs=136.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5789999999963 469999999999999999999999999999999999999999999999998854 234456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc---
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi--- 781 (800)
+.+||+||++.+++.+|++||+.+.....+...++.++.++++++.++|. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998754333333344456788999999996 4789999999999999999999999
Q ss_pred ---CCCcEEEEc
Q 003716 782 ---GNPKVRLSL 790 (800)
Q Consensus 782 ---g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~~~~p~lllLD 165 (258)
T PRK13548 154 EPDGPPRWLLLD 165 (258)
T ss_pred ccCCCCCEEEEe
Confidence 599999999
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=278.47 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=138.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------- 698 (800)
.|+++||++.|+++.. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3789999999974211 12369999999999999999999999999999999999999999999999887521
Q ss_pred ------------------cHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcc
Q 003716 699 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758 (800)
Q Consensus 699 ------------------~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~ 758 (800)
...+.++.|||+||++ .++ ..|++||+.+.....+.+.++..++++++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2345678899999985 455 4699999987655567777777888999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 759 ~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++++.+||||||||++||+||+.+|+++|||
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLD 190 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFD 190 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 89999999999999999999999999999999
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=263.48 Aligned_cols=151 Identities=27% Similarity=0.414 Sum_probs=134.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++||+|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|+++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5889999999963 469999999999999999999999999999999999999999999999998742 2 2677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||++|++.+++.+|++||+.+....++.. ++.++++++.++|. +..++++++||||||||++||+||+.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLA--PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCH--HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998766554321 24578999999996 36789999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 148 llllD 152 (207)
T PRK13539 148 IWILD 152 (207)
T ss_pred EEEEe
Confidence 99999
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=273.74 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=135.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+|+++||++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999963 469999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEecCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L-~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+ +...|+.||+.+.....+....+..++++++++.+++. ++.++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 56789999999753 34568999998765555555555567788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~p~lllLD 161 (271)
T PRK13638 153 LQARYLLLD 161 (271)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=264.13 Aligned_cols=161 Identities=26% Similarity=0.364 Sum_probs=139.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
.++++|+++.|++++ +.+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred CEEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 368999999996421 136799999999999999999999999999999999999999999999999988531 12
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..++.+||+||++.+++.+|+.||+.+....+ ....++.++.++++++.++|. +..++.+.+||||||||+++|+||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999865544 234455667889999999996 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 157 ~~~p~illlD 166 (220)
T TIGR02982 157 VHRPKLVLAD 166 (220)
T ss_pred hcCCCEEEEe
Confidence 9999999999
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=265.11 Aligned_cols=157 Identities=27% Similarity=0.360 Sum_probs=135.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
..+|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+
T Consensus 5 ~~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 347999999999963 469999999999999999999999999999999999999999999999998854 3344
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.+||+||++.+++. |++||+.+....++.. ..+++++++++.+++.+ ...++++.+||||||||++||+||+.
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 56789999999988875 9999998754444322 22456789999999952 36799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 155 ~p~llllD 162 (225)
T PRK10247 155 MPKVLLLD 162 (225)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=271.64 Aligned_cols=161 Identities=24% Similarity=0.384 Sum_probs=140.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
.++++++|++|.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 5 ~~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3479999999999742 2459999999999999999999999999999999999999999999999999854 3456
Q ss_pred hhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+++.+||+||++. +++..|+++|+.+.....+.+.++..++++++++.+++. +..++++++||||||||++||+||+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999974 677789999998765444555555667788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 159 ~~p~lllLD 167 (269)
T PRK13648 159 LNPSVIILD 167 (269)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=274.31 Aligned_cols=164 Identities=28% Similarity=0.384 Sum_probs=148.8
Q ss_pred CcEEEEeEEEEcCCCC---------C---------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 625 HAIISDNLRKIYPGRD---------G---------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~---------~---------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..|+++|+.|.|+++. | .+....|+|+||+|++|||+.|+|-+|||||||+++|.++++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3688999999998631 1 123467999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCc----cHHHh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc
Q 003716 687 GTAYVQGLDIRT----DMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (800)
Q Consensus 687 G~I~i~G~~i~~----~~~~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~ 761 (800)
|+|+++|.|+.. +..+. |++++++||+..|+|+.||.||..|...++|+++++.++++.+.|+.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999964 22333 367999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 762 QAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 762 ~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++|||||||||.+||||+.+|+|+|+|
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEec
Confidence 99999999999999999999999999999
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=263.78 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=135.3
Q ss_pred cEEEEeEEEEcCCCCC-CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC--Ce--ecCc-c
Q 003716 626 AIISDNLRKIYPGRDG-NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~-~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~--G~--~i~~-~ 699 (800)
+++++|++|.|++... +.++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999964211 112479999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ~~---~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.. +. ++.+||+||++.+++.+|++|++.+.....+.......++++++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 3579999999999999999999987544445444555678889999999963 3468899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|++++||
T Consensus 160 laral~~~p~llllD 174 (224)
T TIGR02324 160 IARGFIADYPILLLD 174 (224)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=269.41 Aligned_cols=160 Identities=25% Similarity=0.391 Sum_probs=137.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 347999999999963 4699999999999999999999999999999999999985 89999999999853
Q ss_pred c---HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ~---~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
. ....++.+||+||++.+++ +|++||+.+....++.+..+.++.++++++.+++.+ .+..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 2 2345678999999998888 899999997655555555555667889999999841 135789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 163 v~laral~~~p~llllD 179 (258)
T PRK14268 163 LCIARTLAVKPKIILFD 179 (258)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=284.87 Aligned_cols=145 Identities=26% Similarity=0.382 Sum_probs=129.6
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe----ecCc-c---HHHhh-cceEEecCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-D---MDRIY-TSMGVCPQED 714 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~----~i~~-~---~~~~r-~~IGycpQ~~ 714 (800)
.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+ ++.. . ..+.| +.|||+||+.
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 467999999999999999999999999999999999999999999999997 4432 1 12233 5799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+++.+|++||+.+.....+.+..+.+++++++++.++|. ++.++++.+||||||||++|||||+.+|+|+|||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999876666776667778899999999997 4889999999999999999999999999999999
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=267.97 Aligned_cols=159 Identities=24% Similarity=0.350 Sum_probs=135.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
+.|+++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 57899999999963 469999999999999999999999999999999999964 689999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ .+..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23455778999999998888 59999998765444442 2345677889999999852 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 158 v~laral~~~p~llllD 174 (253)
T PRK14242 158 LCIARALAVEPEVLLMD 174 (253)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=271.24 Aligned_cols=165 Identities=27% Similarity=0.339 Sum_probs=138.2
Q ss_pred CcEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH
Q 003716 625 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~ 700 (800)
.+|+++||+|.|+++.+ ++.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46899999999964211 113569999999999999999999999999999999999999999999999999864 23
Q ss_pred HHhhcceEEecCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+..++.+||+||++. +++.+|+.|++.+..+.. +....+..+.++++++.++|.+ ...++++.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334567999999975 678889999998755443 3344455677899999999952 367889999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+|+|||
T Consensus 162 ral~~~p~lllLD 174 (267)
T PRK15112 162 RALILRPKVIIAD 174 (267)
T ss_pred HHHHhCCCEEEEc
Confidence 9999999999999
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=268.51 Aligned_cols=159 Identities=25% Similarity=0.384 Sum_probs=136.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
.++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999964 4699999999999999999999999999999999999974 79999999998842
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||++|+..+++.+|++||+.+....++. ..++.++.++++++.+++.+ .+..++.+.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345677899999999999999999999876544442 34455667889999999841 1357889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 158 ~laral~~~p~llllD 173 (258)
T PRK14241 158 CIARAIAVEPDVLLMD 173 (258)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=273.70 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=140.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCc-cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~-~~ 700 (800)
.+|+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++ |+|+++|+++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 478999999999642 2469999999999999999999999999999999999999998 899999999864 33
Q ss_pred HHhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
...++++||+||++. +++.+|++||+.+.....+.+.++..++++++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 455678999999974 677789999998755555566666677899999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|++++||
T Consensus 158 l~~~P~llllD 168 (282)
T PRK13640 158 LAVEPKIIILD 168 (282)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.63 Aligned_cols=143 Identities=26% Similarity=0.390 Sum_probs=124.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHhhcceEEecCCC--CCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~r~~IGycpQ~~--~L~~~ 719 (800)
+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+||+||++ .++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 569999999999999999999999999999999999999999999999999842 2334567899999997 355 4
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.|++||+.+.....+....+..++++++++.++|. +..++++.+||||||||+++|+||+.+|++++||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 79999998754444545555667889999999996 4789999999999999999999999999999999
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=261.82 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=135.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47899999999963 4699999999999999999999999999999999999999999999999988642 334
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||++|++.+++.+|++||+.+....++. ..++.++++++.++|. +..++++.+||||||||+++|+|++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655442 2345678899999997 4689999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 157 ~llllD 162 (214)
T PRK13543 157 PLWLLD 162 (214)
T ss_pred CEEEEe
Confidence 999999
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=262.08 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=130.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 3999999999999999999999999999999999999999999999986432 23578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+.........++.+++++++++.++|. +..++++.+||||||||++||+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643321111234456789999999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (211)
T cd03298 150 LLLD 153 (211)
T ss_pred EEEc
Confidence 9999
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=271.84 Aligned_cols=160 Identities=21% Similarity=0.344 Sum_probs=139.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++||++.|++. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 68999999999742 12469999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++. .+...|+.||+.+.....+...++..++++++++.++|. ++.++++.+||||||||++||+||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 677789999998755444555556667889999999996 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 159 p~llllD 165 (277)
T PRK13642 159 PEIIILD 165 (277)
T ss_pred CCEEEEe
Confidence 9999999
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=271.22 Aligned_cols=158 Identities=28% Similarity=0.412 Sum_probs=134.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+++++|+++.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 3789999999963 2469999999999999999999999999999999999999999999999999842 2234
Q ss_pred hhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+++.|||+||++. .+..+|++||+.+.....+...++..+++.++++.++|. ++.++++++||||||||+++|+||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 5788999999963 333469999998643333444555667889999999996 4889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (275)
T PRK13639 154 MKPEIIVLD 162 (275)
T ss_pred cCCCEEEEe
Confidence 999999999
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=267.66 Aligned_cols=159 Identities=23% Similarity=0.369 Sum_probs=135.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
.+++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999963 4699999999999999999999999999999999999997 59999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++. ...+.++.++++++.+++.+ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456778999999998885 8999999876544443 23345677889999998831 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+++|||
T Consensus 159 v~laral~~~p~lllLD 175 (254)
T PRK14273 159 LCIARTLAIEPNVILMD 175 (254)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=269.25 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=136.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
...|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 357999999999963 4699999999999999999999999999999999999975 89999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
.....++.+||+||++.+++. |++||+.+....++. +..+..++++++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567789999999988885 999999875544443 23345667899999999952 1246789999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 170 qrv~laral~~~p~lllLD 188 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMD 188 (267)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=268.17 Aligned_cols=160 Identities=23% Similarity=0.339 Sum_probs=137.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
...++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999986 589999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++ +|++||+.+..... +.+.++.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998888 89999998765433 4455555678899999999842 13578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 164 rv~laral~~~p~lllLD 181 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLD 181 (260)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999999
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=267.53 Aligned_cols=156 Identities=22% Similarity=0.333 Sum_probs=136.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-------
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~------- 699 (800)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999999999988421
Q ss_pred -------HHHhhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -------~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
....++.+||+||++.+++.+|+.||+.+... .++....+.++.++++++.+++. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13456789999999999999999999987432 23444455667789999999996 478999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++||+||+.+|+++|||
T Consensus 153 qrv~laral~~~p~llllD 171 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFD 171 (252)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=267.43 Aligned_cols=157 Identities=26% Similarity=0.386 Sum_probs=136.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...+.+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5889999999963 569999999999999999999999999999999999999999999999998753 334456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~----lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.+||+||+..+++.+|+.|++.+... ..+....+..+.++++++.+++. +..++++.+||||||||++||+|+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 789999999999999999999987421 12222234456788999999996 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 154 ~~~p~llllD 163 (255)
T PRK11231 154 AQDTPVVLLD 163 (255)
T ss_pred hcCCCEEEEc
Confidence 9999999999
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=268.83 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=132.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||+|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAR 80 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hhh
Confidence 56999999999963 46999999999999999999999999999999999999999999999998763 456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+.. ++ ..+++++++++.++|. +..++++.+||||||||++||+||+.+|
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998742 11 2345788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 153 ~lllLD 158 (257)
T PRK11247 153 GLLLLD 158 (257)
T ss_pred CEEEEe
Confidence 999999
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=269.03 Aligned_cols=158 Identities=23% Similarity=0.321 Sum_probs=136.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 10 ~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 46999999999963 479999999999999999999999999999999999999999999999998853 33455
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++.+||+||+..+++.+|+.||+.+... .++ ......+++++++++.+++. +..++++++||||||||+++|+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999888899999999986421 111 11233456789999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+|+|||
T Consensus 162 l~~~p~lllLD 172 (265)
T PRK10575 162 VAQDSRCLLLD 172 (265)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=254.67 Aligned_cols=155 Identities=27% Similarity=0.411 Sum_probs=144.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++.+++++..|+++ ...+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|.|.++|..|...- .
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----a 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----A 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----c
Confidence 56788999999863 256999999999999999999999999999999999999999999999999996532 2
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.-|+++|++.|+|.+|+.||+.|..+++|+++.+..+.+.+.+..+||. +..++.+-+||||||||+.|||||.-+|+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~--~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc--cccccceEeecchHHHHHHHHHHhhcCcc
Confidence 3599999999999999999999999999999999999999999999997 47799999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
.+|||
T Consensus 153 ~LlLD 157 (259)
T COG4525 153 LLLLD 157 (259)
T ss_pred eEeec
Confidence 99999
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=261.03 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=131.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||+|.|++ +++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999952 45799999999999999999999999999999999999999999999998642 235678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+..........+.+++++++++.+++. +..++.+.+||||||||++||+||+.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643221111223456788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (213)
T TIGR01277 150 LLLD 153 (213)
T ss_pred EEEc
Confidence 9999
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=266.64 Aligned_cols=158 Identities=27% Similarity=0.359 Sum_probs=134.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36899999999963 5799999999999999999999999999999999999999999999999998642 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-------kg~------~--~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LS 767 (800)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+.++++++.+++. +..++++++||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999874321 111 1 112345678899999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||++||+||+.+|+++|||
T Consensus 156 ~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999999
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=268.93 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=135.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
.+|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 47999999999963 569999999999999999999999999999999999987 699999999998742
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
+....++.+||+||++.+++. |++||+.+....++.. .+.++.++++++.+++.. .+..++++.+||||||||+
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 344567789999999998884 9999998866555443 234566788899888741 1357889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 164 ~laral~~~p~lllLD 179 (269)
T PRK14259 164 CIARTIAIEPEVILMD 179 (269)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=264.92 Aligned_cols=160 Identities=23% Similarity=0.334 Sum_probs=136.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~- 698 (800)
..|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 46899999999963 469999999999999999999999999999999999986 4 69999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||+..+++.+|++||+.+.....+. ...+.+++++++++.+++.+ .+..++.+++||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335677899999999999999999999875444332 33445667889999999852 124678899999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 157 l~laral~~~p~llllD 173 (252)
T PRK14256 157 LCIARTIAVKPEVILMD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=262.87 Aligned_cols=155 Identities=35% Similarity=0.530 Sum_probs=137.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|.++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886432 23578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++......++.++++++.+++. +..++.+.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765555555555667889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (232)
T cd03300 152 LLLD 155 (232)
T ss_pred EEEc
Confidence 9999
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=267.78 Aligned_cols=164 Identities=23% Similarity=0.321 Sum_probs=136.8
Q ss_pred cEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-
Q 003716 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~- 700 (800)
+|+++||+|.|++... ..++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 5889999999963110 0135799999999999999999999999999999999999999999999999998642 1
Q ss_pred --HHhhcceEEecCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 701 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 701 --~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
...++.|||+||++ .+++.+|++||+.+... ..+....+.+++++++++.+++.+ ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 46788999999976433 233444455677899999999952 3679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 161 laral~~~p~illLD 175 (265)
T TIGR02769 161 IARALAVKPKLIVLD 175 (265)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=264.29 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=135.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCc-cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~-~~~ 701 (800)
+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5789999999963 469999999999999999999999999999999999974 799999999999864 334
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLsiA 777 (800)
..++.+||+||++.+++ .|++||+.+....++. .....+++++++++.+++.+ .+..++.+.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56778999999999987 6999999876555443 12345567889999999952 1246889999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 155 ral~~~p~lllLD 167 (246)
T PRK14269 155 RALAIKPKLLLLD 167 (246)
T ss_pred HHHhcCCCEEEEc
Confidence 9999999999999
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=263.27 Aligned_cols=154 Identities=23% Similarity=0.388 Sum_probs=136.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|.++|+++.|++ + +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999963 2 8999999999999999999999999999999999999999999999999864222 3578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|+.||+.+.....+....+.++.+.++++.++|. +..++++.+||||||||++||+|++.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998755455555556667788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 151 lllD 154 (235)
T cd03299 151 LLLD 154 (235)
T ss_pred EEEC
Confidence 9999
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=266.07 Aligned_cols=156 Identities=26% Similarity=0.382 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 678999999963 569999999999999999999999999999999999999999999999999864 3344566
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~-l---kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||++.++..+|++||+.+... . .+....+..+.++++++.+++. +..++++.+||||||||+++|+||+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 79999999888888999999987421 1 1222234456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (256)
T TIGR03873 154 QEPKLLLLD 162 (256)
T ss_pred cCCCEEEEc
Confidence 999999999
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=275.73 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=137.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCcceEEECCeecCcc-H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~----ptsG~I~i~G~~i~~~-~ 700 (800)
.|+++||++.|+++.+ .+.||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 5899999999975321 2579999999999999999999999999999999999997 4899999999998642 2
Q ss_pred ---HHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCC-CccccccCCCCChhHHH
Q 003716 701 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 701 ---~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LSGG~Kr 772 (800)
.+.| +.|||+||++ .+.+.+|+.+++...... .+..+++.++++.++|+.++|.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2222 4699999997 588999999988765443 24455666788999999999963 13578999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+||+||+.+|++||||
T Consensus 161 Rv~iArAL~~~P~llilD 178 (326)
T PRK11022 161 RVMIAMAIACRPKLLIAD 178 (326)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 999999999999999999
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=265.49 Aligned_cols=160 Identities=26% Similarity=0.392 Sum_probs=136.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~ 698 (800)
+.+|+++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999987 3 69999999999852
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++. ..++..++++++++.+++.+ .+..++++++|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567789999999988885 999999876555543 23445567888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 163 rv~laral~~~p~llllD 180 (259)
T PRK14274 163 RLCIARALATNPDVLLMD 180 (259)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999999999999999
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=271.24 Aligned_cols=163 Identities=24% Similarity=0.276 Sum_probs=136.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
..|+++||+|.|+++.+ ..+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35899999999974210 01359999999999999999999999999999999999999999999999998742
Q ss_pred cHHHhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
.....++.+||+||++. +++ .|++||+.+....++...++..++++++++.++|.. +..++++++||||||||++|
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHH
Confidence 23456778999999973 444 599999987544444444555667889999999942 47899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|+++|||
T Consensus 162 aral~~~p~lLlLD 175 (289)
T PRK13645 162 AGIIAMDGNTLVLD 175 (289)
T ss_pred HHHHHhCCCEEEEe
Confidence 99999999999999
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=262.40 Aligned_cols=153 Identities=28% Similarity=0.405 Sum_probs=131.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HHhh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~~r 704 (800)
|+++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 2 2245
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~-L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++.+++.+|++||+.+....++.. ..+.++++++.++ +. +..++++.+||||||||++||+||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999998765443322 2334577788776 44 467999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 150 p~illlD 156 (230)
T TIGR03410 150 PKLLLLD 156 (230)
T ss_pred CCEEEec
Confidence 9999999
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=263.90 Aligned_cols=160 Identities=25% Similarity=0.376 Sum_probs=136.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
++.++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357899999999963 4699999999999999999999999999999999999875 79999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++ +|++||+.+.....+. ...+..++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22345778999999999887 8999999976555544 23345567888999998842 13578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+|++||
T Consensus 155 rv~laral~~~p~llllD 172 (251)
T PRK14270 155 RLCIARTIAVKPDVILMD 172 (251)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=264.56 Aligned_cols=153 Identities=29% Similarity=0.417 Sum_probs=132.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5889999999963 469999999999999999999999999999999999999999999999999854 334556
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++ .|++||+.+....++ ...++++++++.++|.+ +..++.+.+||||||||++||+||+.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999998887 699999986433332 12456788999999952 3678999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 151 ~llllD 156 (241)
T PRK14250 151 EVLLLD 156 (241)
T ss_pred CEEEEe
Confidence 999999
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=263.33 Aligned_cols=155 Identities=28% Similarity=0.448 Sum_probs=137.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++|+||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcC
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 234678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.......+.++++++.+++. ++.++.+++||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765555544445566789999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (237)
T TIGR00968 152 LLLD 155 (237)
T ss_pred EEEc
Confidence 9999
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=267.65 Aligned_cols=158 Identities=19% Similarity=0.300 Sum_probs=136.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+|.++||+|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999963 469999999999999999999999999999999999999999999999998854 33445
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++.+||+||++.+++.+|++||+.+... ..+ ...+..++.++++++.++|. +..++++.+||||||||++||+|
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 6789999999999999999999986421 111 11233456788999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 158 l~~~p~llllD 168 (265)
T PRK10253 158 LAQETAIMLLD 168 (265)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=266.29 Aligned_cols=158 Identities=23% Similarity=0.324 Sum_probs=135.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCc---
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~--- 698 (800)
++++++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47899999999963 56999999999999999999999999999999999999986 4999999998853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l--------kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LS 767 (800)
.....++.+||+||++.+++.+|++||+.+.... .+....+.+++++++++.+++. +..++.+++||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 2244567899999999999999999999864210 0111234456789999999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||++|||||+.+|+|||||
T Consensus 155 ~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999999
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=265.11 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=134.7
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
..++++++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3467999999999963 469999999999999999999999999999999999864 79999999999985
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++. |++||+.+.....+.. ....++.+++.++.+++.+ .+..++++++||||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 3 223456789999999998885 9999998754433322 2234566788899998842 1256899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++||+||+.+|+++|||
T Consensus 171 qrl~laral~~~p~lllLD 189 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred HHHHHHHHHhCCCCEEEEc
Confidence 9999999999999999999
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=262.40 Aligned_cols=157 Identities=21% Similarity=0.271 Sum_probs=131.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCcc-HHH-
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~-~~~- 702 (800)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999963 56999999999999999999999999999999999995 79999999999988642 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-C------CCchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-N------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g------~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrRL 774 (800)
.+..++|+||++.+++.+|++|++.+..... + ....+..+.++++++.++|.+ +..++++. +|||||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 3445999999999999999999998754321 1 122334567899999999963 36788887 5999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 154 ~la~al~~~p~llllD 169 (243)
T TIGR01978 154 EILQMALLEPKLAILD 169 (243)
T ss_pred HHHHHHhcCCCEEEec
Confidence 9999999999999999
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=262.39 Aligned_cols=156 Identities=24% Similarity=0.368 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . +.
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 36899999999963 4699999999999999999999999999999999999999999999999998542 2 23
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l-~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+..... ...+..+.++++++.+ ++. +..++++++||||||||++||+||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998743221 2233455677788887 475 3678899999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|++||
T Consensus 154 ~~p~illlD 162 (237)
T PRK11614 154 SQPRLLLLD 162 (237)
T ss_pred hCCCEEEEc
Confidence 999999999
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=259.43 Aligned_cols=149 Identities=36% Similarity=0.570 Sum_probs=132.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999963 4699999999999999999999999999999999999999999999999987532 1357
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++.. ++.+.++++.+++. +..++.+.+||||||||+++|+|++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876554432 34678899999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 146 lllD 149 (223)
T TIGR03740 146 LILD 149 (223)
T ss_pred EEEC
Confidence 9999
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=267.14 Aligned_cols=159 Identities=23% Similarity=0.405 Sum_probs=136.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
.++|+++||+|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999987 689999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |++||+.+....++.+. +.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567789999999988885 99999987655555432 45667899999999852 135689999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+|+|||
T Consensus 189 v~LAraL~~~p~lLLLD 205 (285)
T PRK14254 189 LCIARAIAPDPEVILMD 205 (285)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=261.64 Aligned_cols=158 Identities=25% Similarity=0.401 Sum_probs=134.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
.|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5889999999963 4699999999999999999999999999999999999763 79999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+....++.. .++.++.++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23456778999999998888 89999999765555532 3345677888999998742 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 156 ~laral~~~p~llllD 171 (250)
T PRK14240 156 CIARALAVEPEVLLMD 171 (250)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=261.25 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=134.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl---~~p--tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 46899999999963 4699999999999999999999999999999999997 455 59999999999854
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ .|++||+.+....++... +..++.++++++.+++.+ .+..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456778999999998887 599999987554444332 345567889999999852 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 155 v~laral~~~p~lllLD 171 (250)
T PRK14245 155 LCIARAMAVSPSVLLMD 171 (250)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=260.61 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=131.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++||+|.|++ +. .++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhc
Confidence 3789999999963 22 3899999999999999999999999999999999999999999999886422 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|+.||+.+.........+..+++++++++.++|. +..++++.+||||||||+++|+|++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999997642211111233456789999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 150 lllLD 154 (232)
T PRK10771 150 ILLLD 154 (232)
T ss_pred EEEEe
Confidence 99999
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=264.25 Aligned_cols=158 Identities=27% Similarity=0.425 Sum_probs=134.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
+|+++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999963 4699999999999999999999999999999999999874 89999999998853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+.....+.. ....++.++++++.+++.+ ....++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 12345678999999999888 89999998765444432 2345567888999999852 1247899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 156 ~la~al~~~p~llllD 171 (250)
T PRK14262 156 CIARALAVEPEVILLD 171 (250)
T ss_pred HHHHHHhCCCCEEEEe
Confidence 9999999999999999
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=272.16 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=139.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCcc-
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~- 699 (800)
...++++||++.|+.+.+ ...||+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 357899999999964322 357999999999999999999999999999999999999996 99999999998642
Q ss_pred H---HHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHH
Q 003716 700 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (800)
Q Consensus 700 ~---~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~K 771 (800)
. .+.| +.|||+||++ .+.+.+|+.+++......+ +....+..+++.++++.++|.+. ...++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6899999999987654443 34555667788999999999631 245789999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++||+|
T Consensus 168 QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=263.70 Aligned_cols=161 Identities=23% Similarity=0.376 Sum_probs=136.7
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
...+|+++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 569999999999999999999999999999999999986 58999999999985
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++ .|++||+.+.....+. .+.+.+++++++++.++|.+ .+..++++++||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23456788999999998887 5999999875444343 23345667889999999852 1357899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++++||
T Consensus 170 qrl~laral~~~p~lllLD 188 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMD 188 (267)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=288.93 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=137.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 46899999999963 5699999999999999999999999999999999999999999999999998532 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++|++.+....+ ..+..+.+++++++++.++|. +..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHH
Confidence 3567999999999999999999998753322 122344556789999999997 3789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 155 al~~~p~lllLD 166 (501)
T PRK10762 155 VLSFESKVIIMD 166 (501)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=260.51 Aligned_cols=159 Identities=26% Similarity=0.397 Sum_probs=134.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~p---tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+. +| ++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 36899999999963 46999999999999999999999999999999999985 46 59999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++... ...+++++++++.+++.+ .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999999887 899999987655445432 334567888999998742 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|+++|||
T Consensus 157 v~laral~~~p~llllD 173 (252)
T PRK14239 157 VCIARVLATSPKIILLD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=255.88 Aligned_cols=148 Identities=25% Similarity=0.382 Sum_probs=128.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cHHHhh
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 704 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~~~~r 704 (800)
-+|+|+|++ +.+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 499999974 334 99999999 9999999999999999999999999999999999998753 123456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+..... .....+++++++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998754322 2233456788999999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 151 ~llllD 156 (214)
T cd03297 151 ELLLLD 156 (214)
T ss_pred CEEEEc
Confidence 999999
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=258.01 Aligned_cols=159 Identities=27% Similarity=0.377 Sum_probs=135.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~~ 702 (800)
.+.++|++++|++.+ ..+.+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 467899999997532 13679999999999999999999999999999999999999 999999999998853 35
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~---~~~~~~~~v~~-~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++||+.+.....+. ......+.+++ .++.+++. +..++.+++||||||||+++|+
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999976544321 12222334555 89999996 4778999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 157 al~~~p~illlD 168 (226)
T cd03234 157 QLLWDPKVLILD 168 (226)
T ss_pred HHHhCCCEEEEe
Confidence 999999999999
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=260.80 Aligned_cols=160 Identities=25% Similarity=0.372 Sum_probs=135.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 347999999999963 469999999999999999999999999999999999976 3 48999999999864
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
...+.++.+||+||++.+++. |++||+.+..+.++.. ..+.++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 234567789999999999885 9999999766555432 2344567888899988842 12468999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|+++|+||+.+|+++|||
T Consensus 157 rv~laral~~~p~lllLD 174 (253)
T PRK14261 157 RLCIARTLAVNPEVILMD 174 (253)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=259.86 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=135.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~- 698 (800)
+.++++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46899999999963 46999999999999999999999999999999999999997 6999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |++||+.+....++.. .++.++.++++++.+++.+ .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 234567889999999998875 9999998765544433 2334566788888888742 135789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 156 v~laral~~~p~lllLD 172 (251)
T PRK14249 156 LCIARVLAIEPEVILMD 172 (251)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=287.83 Aligned_cols=158 Identities=20% Similarity=0.299 Sum_probs=137.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeecCcc-H-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M- 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i~~~-~- 700 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++... .
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999963 4699999999999999999999999999999999999996 899999999998642 2
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+..++.+||+||++.+++.+|++||+.+....+ + .+.++..++++++++.+++. +..++++++||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234577999999999999999999998764432 2 23344566789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+++|||
T Consensus 156 ~al~~~p~lllLD 168 (506)
T PRK13549 156 KALNKQARLLILD 168 (506)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=260.04 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=134.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
++|+++|+++.|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999963 469999999999999999999999999999999999997 489999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||++|++.+++ .|++||+.+.....+... +..++.++++++.+++.. .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 23345778999999999886 799999987554444332 334567888999999841 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+++|||
T Consensus 156 ~~laral~~~p~llllD 172 (251)
T PRK14251 156 ICIARALAVRPKVVLLD 172 (251)
T ss_pred HHHHHHHhcCCCEEEec
Confidence 99999999999999999
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=244.84 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=146.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
.|++++++|.-+... ....+|++|+|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++.+- ..
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 688999999997643 357899999999999999999999999999999999999999999999999998652 22
Q ss_pred Hhh-cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r-~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..| +++|+++|...|.|+||..||+..-..++|-...+....+.+.|+.+||. +..+.++++||||++|||+||||+
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHHh
Confidence 333 67999999999999999999999999999877777788899999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+..|+|+|-|
T Consensus 162 a~~P~vLfAD 171 (228)
T COG4181 162 AGRPDVLFAD 171 (228)
T ss_pred cCCCCEEecc
Confidence 9999999999
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=274.37 Aligned_cols=148 Identities=21% Similarity=0.343 Sum_probs=129.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~ 700 (800)
+|++ ||+|.|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 3667 99999963 22 3 89999999999999999999999999999999999999999999988531 2
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
...++.+||+||+..+++++|++||+.+... ...+++++++++.++|. +..++++++||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999986422 12346788999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 144 ~~~p~llLLD 153 (352)
T PRK11144 144 LTAPELLLMD 153 (352)
T ss_pred HcCCCEEEEc
Confidence 9999999999
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=259.60 Aligned_cols=159 Identities=25% Similarity=0.377 Sum_probs=133.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~-- 698 (800)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6889999999963 56999999999999999999999999999999999999874 8999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++.+|++||+.+.....+.. .++..+.+++.++.+++.+ .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23355778999999999999999999998754433332 2334566777788887631 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 158 ~laral~~~p~llllD 173 (252)
T PRK14272 158 CIARALAVEPEILLMD 173 (252)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=260.70 Aligned_cols=159 Identities=20% Similarity=0.270 Sum_probs=133.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCcc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~~ 699 (800)
.+++++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 46999999999963 469999999999999999999999999999999999999999999999998 6431
Q ss_pred -HHH----hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -~~~----~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
..+ .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++.+.++++.+++.+ ...++.+.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 211 245799999997 467788999998753222221 22345667889999999962 367899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+|+|||
T Consensus 158 qrl~laral~~~p~llllD 176 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMD 176 (258)
T ss_pred HHHHHHHHHhcCCCEEEEc
Confidence 9999999999999999999
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=274.29 Aligned_cols=148 Identities=22% Similarity=0.355 Sum_probs=129.1
Q ss_pred eEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHHhhc
Q 003716 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 705 (800)
Q Consensus 631 nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~~r~ 705 (800)
||+|.|++ +. + ++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999963 33 4 99999999999999999999999999999999999999999999998532 224567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+..... ...+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998754322 2334456789999999997 48899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 152 lllLD 156 (354)
T TIGR02142 152 LLLMD 156 (354)
T ss_pred EEEEc
Confidence 99999
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=261.53 Aligned_cols=160 Identities=25% Similarity=0.381 Sum_probs=136.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 457999999999963 469999999999999999999999999999999999987 489999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++.. ....+++++++++.+++.+ .+..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 234567889999999999886 9999998765554432 2334567888999999852 12568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|++++||
T Consensus 176 rv~laral~~~p~lllLD 193 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLD 193 (272)
T ss_pred HHHHHHHHHCCCCEEEEe
Confidence 999999999999999999
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=258.76 Aligned_cols=158 Identities=24% Similarity=0.383 Sum_probs=134.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+.+| ++|+|+++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 5889999999963 4699999999999999999999999999999999999986 59999999998842
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
.....++.+||+||++.+++ .|++||+.+.....+.. ....++++++.++.+++.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456778999999999987 89999998754433332 2344567788899888742 13568899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 156 laral~~~p~llllD 170 (249)
T PRK14253 156 IARTIAMEPDVILMD 170 (249)
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999999999
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=259.59 Aligned_cols=159 Identities=28% Similarity=0.408 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
..++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 46899999999963 4699999999999999999999999999999999999985 58999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++ .++.+..+.++++++.+++.+ .+..++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23455678999999999987 899999987544433 233445567888999998842 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 159 v~laral~~~p~lllLD 175 (259)
T PRK14260 159 LCIARALAIKPKVLLMD 175 (259)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=252.78 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=122.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~~ 702 (800)
.+.++||+|.|+.+. .++.+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 467999999998642 24679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.+||+||++.+++.+|++||+.+..... .++++.+||||||||+++|+||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999998653211 356788999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 136 ~p~llllD 143 (202)
T cd03233 136 RASVLCWD 143 (202)
T ss_pred CCCEEEEc
Confidence 99999999
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=285.47 Aligned_cols=158 Identities=23% Similarity=0.257 Sum_probs=136.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH-H
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-R 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-~ 702 (800)
.+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 46899999999963 4699999999999999999999999999999999999999999999999998642 22 2
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~----lkg~---~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.++.+||+||++.+++.+|++||+.+... ..+. +..+..++++++++.++|. +..++++++|||||||||+
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999976321 1222 2234566789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+|+|||
T Consensus 156 ia~al~~~p~lllLD 170 (510)
T PRK09700 156 IAKTLMLDAKVIIMD 170 (510)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=257.13 Aligned_cols=159 Identities=25% Similarity=0.404 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ | ++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 47899999999963 469999999999999999999999999999999999875 5 59999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
+....++.+||+||++.+++ .|++||+.+....++... +..++++.+.++.+++.. .+..++.+++||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23455678999999999888 699999987655444332 233456778888887631 135688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 157 v~laral~~~p~llllD 173 (252)
T PRK14255 157 VCIARVLAVKPDVILLD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=269.22 Aligned_cols=163 Identities=20% Similarity=0.213 Sum_probs=133.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCcceEEECCeecCc-cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~----ptsG~I~i~G~~i~~-~~ 700 (800)
+|+++||+|.|+.+++ .+.||+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDG--WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCC--CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 6899999999964322 3579999999999999999999999999999999999997 589999999999854 22
Q ss_pred HH---h-hcceEEecCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-ccccccCCCCC
Q 003716 701 DR---I-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 767 (800)
Q Consensus 701 ~~---~-r~~IGycpQ~~~--L~~~LTv~E~L~~~~~l---kg~---~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LS 767 (800)
.+ . ++.|||+||++. +.+.+|+.+++...... ++. ...+.++++.++|+.++|.+. +..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 22 2 347999999975 67889999999753221 111 113446678999999999631 24689999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
|||||||+||+||+.+|++||||
T Consensus 161 gG~~QRv~iArAL~~~P~llilD 183 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=263.31 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=134.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
.+.|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 457899999999963 459999999999999999999999999999999999864 499999999998853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++.. ....++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223457789999999998875 9999999765544443 2334567888899988741 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|+++|||
T Consensus 190 rv~LAraL~~~p~lllLD 207 (286)
T PRK14275 190 RLCVARTLAVEPEILLLD 207 (286)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=283.87 Aligned_cols=155 Identities=24% Similarity=0.349 Sum_probs=136.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~ 702 (800)
.++|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..+
T Consensus 9 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 9 PPLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred CceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 347999999999963 4699999999999999999999999999999999999999999999999998642 222
Q ss_pred h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
. ++.+||+||++.+++.+|++||+.+.... ..+.+++++++++.++|. +..++++++|||||||||+||+||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHH
Confidence 2 35799999999999999999999874321 234456789999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~lllLD 165 (510)
T PRK15439 157 RDSRILILD 165 (510)
T ss_pred cCCCEEEEE
Confidence 999999999
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=249.00 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=128.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++ +||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++... . ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~--~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-A--KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-h--hh
Confidence 3789999999953 34555 9999999999999999999999999999999999999999999988532 1 35
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|++|+..+++.+|++||+.+....++ ..+.++++++.+++. +..++++++||||||||+++|+|++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 69999999888888999999987654432 244678889999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 144 ~lllD 148 (195)
T PRK13541 144 LWLLD 148 (195)
T ss_pred EEEEe
Confidence 99999
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=289.11 Aligned_cols=166 Identities=26% Similarity=0.324 Sum_probs=140.0
Q ss_pred CCcEEEEeEEEEcCCCCC-----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~-----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
.++|+++||+|.|+.+.+ ...+.+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999963211 012469999999999999999999999999999999999999999999999999854
Q ss_pred c----HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 699 D----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ~----~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
. ....++.|||+||++ .+++.+|+.|++.+....++. ...+..++++++|+.++|.. +..++++++||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqr 469 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQR 469 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHH
Confidence 2 223467899999996 589999999999875544443 23455678899999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||+|||||+.+|++||||
T Consensus 470 QRv~iAraL~~~p~llllD 488 (623)
T PRK10261 470 QRICIARALALNPKVIIAD 488 (623)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=261.26 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=133.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------cceEEECCeecC
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 697 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt--------sG~I~i~G~~i~ 697 (800)
+|+++||+|.|++ +.+++++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999963 46999999999999999999999999999999999999998 999999999985
Q ss_pred c-cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 698 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 698 ~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
. ...+.++.++|+||++.++..+|++||+.+.... .+....+..+.++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 3345566799999998766679999999874211 1111233456788999999997 4789999999999999
Q ss_pred HHHHHHHHc---------CCCcEEEEc
Q 003716 773 RLSVAISLI---------GNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALi---------g~P~vlLLD 790 (800)
|++||+||+ .+|+++|||
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLD 179 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLD 179 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEc
Confidence 999999999 599999999
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=259.80 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=132.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
++|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 9 ~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 47999999999963 469999999999999999999999999999999999986 489999999998842
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++. |++||+.+....++.. .+.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 234567789999999988884 9999998765444332 234556777888888742 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 161 ~laral~~~p~lllLD 176 (264)
T PRK14243 161 CIARAIAVQPEVILMD 176 (264)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=258.25 Aligned_cols=160 Identities=24% Similarity=0.388 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECC------eecCc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIRT 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G------~~i~~ 698 (800)
+++.++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++..
T Consensus 9 ~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 9 DVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 57999999999974 5699999999999999999999999999999999999999997777666 44432
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++.+|++||+.+....++.. ..+..+.++++++.+++.+ .+..++.+.+||||||||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 33456788999999999999999999998865444432 3455567899999999852 0256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 163 ~laral~~~P~llllD 178 (257)
T PRK14246 163 TIARALALKPKVLLMD 178 (257)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999999
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=260.15 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=134.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
..++++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47899999999963 5799999999999999999999999999999999999986 69999999998854
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRL 774 (800)
.....++.++|+||++.+++ +|++||+.+.....+ ....+..+.+.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23356778999999999888 799999987543322 2334455667888999998521 235788999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 173 ~LAral~~~p~lllLD 188 (276)
T PRK14271 173 CLARTLAVNPEVLLLD 188 (276)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=257.86 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~- 698 (800)
..|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36899999999963 36999999999999999999999999999999999999986 8999999998742
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
....+++.++|+||+..+++ +|++||+.+.....+. +..+..+.+.++++.+++.+ .+..++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999998888 8999999876544443 33344567889999999842 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|+|++||
T Consensus 159 v~laral~~~p~vllLD 175 (261)
T PRK14258 159 LCIARALAVKPKVLLMD 175 (261)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=258.25 Aligned_cols=155 Identities=23% Similarity=0.413 Sum_probs=125.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++. .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999641 2469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+... +.......+ .+++.++.+ ++. ...++++.+|||||||||+|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998875 699999987432 212111111 123445555 443 3568899999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 152 al~~~p~llllD 163 (237)
T cd03252 152 ALIHNPRILIFD 163 (237)
T ss_pred HHhhCCCEEEEe
Confidence 999999999999
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=282.13 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=137.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~ 702 (800)
++++++||+|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 46899999999963 469999999999999999999999999999999999999999999999999853 2234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
.++.|||+||++.+++.+|++||+.+... ..+ ....+.+++++++++.++|. +..++++.+||||||||++||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987432 122 23345567889999999996 36799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+|+|||
T Consensus 155 l~~~p~lllLD 165 (501)
T PRK11288 155 LARNARVIAFD 165 (501)
T ss_pred HHhCCCEEEEc
Confidence 99999999999
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=259.22 Aligned_cols=160 Identities=23% Similarity=0.367 Sum_probs=133.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 457999999999963 459999999999999999999999999999999999997 699999999999842
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+..+.++... ...++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234557789999999988874 99999987554444322 233456777888775421 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 175 rv~laraL~~~p~lllLD 192 (271)
T PRK14238 175 RLCIARCLAIEPDVILMD 192 (271)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999999
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=255.10 Aligned_cols=155 Identities=23% Similarity=0.431 Sum_probs=127.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|+++ ++.+++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999642 2369999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+..... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||+
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999998887 69999998754321 1122221 235556665 554 3678889999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 152 al~~~p~lllLD 163 (234)
T cd03251 152 ALLKDPPILILD 163 (234)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=258.51 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=136.4
Q ss_pred cEEEEeEEEEcCCC---CCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---
Q 003716 626 AIISDNLRKIYPGR---DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~---~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--- 699 (800)
+|+++||+|.|++. .++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 000135799999999999999999999999999999999999999999999999988532
Q ss_pred -HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 -~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++ .+++..|+.|++.+... ..+....+..+.++++++.+++.+ ...++++.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 134567899999997 46778999999876432 233444445567899999999952 3679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 162 laral~~~p~lllLD 176 (268)
T PRK10419 162 LARALAVEPKLLILD 176 (268)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=287.46 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=139.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----- 698 (800)
.++|+++||++.|++.. +.+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 35799999999996421 13579999999999999999999999999999999999999999999999975421
Q ss_pred ------c---HHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CccccccCC
Q 003716 699 ------D---MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 764 (800)
Q Consensus 699 ------~---~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~ 764 (800)
. ..+.+ +.|||++|++ .+++.+||+||+.+..+.+ +.+..+.+++++++++.+||.+ +...++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11233 4799999997 6889999999999865553 5666667788999999999953 135799999
Q ss_pred CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 765 KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 765 ~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|||||||||+||+||+.+|+|||||
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999999999
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=256.75 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=130.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCccHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~~~~ 701 (800)
.++++|++|.| + +.+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++.. .+
T Consensus 4 ~l~~~~l~~~~-~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQA-A------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEe-c------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 68999999999 2 3599999999999999999999999999999999999999 99999999999853 22
Q ss_pred HhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 702 ~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..++.+||+||++. +.+.+|+.+++.+.....+... .++.++++++.++|.+. ...++.+.+||||||||++|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4566899999876554444322 24678899999999631 1468999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 154 al~~~p~lLlLD 165 (254)
T PRK10418 154 ALLCEAPFIIAD 165 (254)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=252.72 Aligned_cols=151 Identities=26% Similarity=0.438 Sum_probs=126.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|++|.|+++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999642 2469999999999999999999999999999999999999999999999998753 2334567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccccc-----------CCCCChhHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 774 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~-----------~~~LSGG~KrRL 774 (800)
.+||+||++.+++ .|++||+.+..... ..+.++++++.+++. +..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPLA------DDERILRAAELAGVT--DFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCCC------CHHHHHHHHHHcCcH--HHHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 69999997643211 134566778888885 245554 469999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 150 ~la~al~~~p~llllD 165 (220)
T cd03245 150 ALARALLNDPPILLLD 165 (220)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=256.24 Aligned_cols=157 Identities=24% Similarity=0.379 Sum_probs=131.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc---
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 698 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~--- 698 (800)
-+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 368999999963 569999999999999999999999999999999999986 479999999998753
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
....+++.+||+||++.+++. |++||+.+....++. ...+.++.++++++.+++.+ ....++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 223457789999999988886 999999875444443 22345567888999999953 1245788999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 159 ~laral~~~p~llllD 174 (251)
T PRK14244 159 CIARAIAVKPTMLLMD 174 (251)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=255.17 Aligned_cols=159 Identities=19% Similarity=0.356 Sum_probs=131.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
..+++++|+++.|++++ .+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 46799999999997521 2469999999999999999999999999999999999999999999999998753 3344
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHc--CCCCCccccccCCCCChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~-----~~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.++.+||+||++.+++ .|++||+.+..... ...+.. ..++++++.+ |+. ...++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998886 59999998643211 111111 1256778888 775 3678899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 161 laral~~~p~llllD 175 (226)
T cd03248 161 IARALIRNPQVLILD 175 (226)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=254.75 Aligned_cols=158 Identities=26% Similarity=0.416 Sum_probs=134.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~-- 698 (800)
.++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|+++|+++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999963 469999999999999999999999999999999999864 489999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 244567889999999999885 9999998754433322 3345677889999999842 1346889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 156 ~laral~~~p~llllD 171 (250)
T PRK14266 156 CIARTIAVSPEVILMD 171 (250)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999999
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=255.74 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=130.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~- 698 (800)
++|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|++ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 36899999999963 468999999999999999999999999999999999999999999999987 532
Q ss_pred cHH----HhhcceEEecCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 699 DMD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ~~~----~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
... ..++.+||++|++. +...+|+.|++.+... .......+.++.++++++.+++.+ ...++.+.+||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQ 154 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHH
Confidence 111 12457999999974 5566799999865321 111112234567889999999962 378999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 155 qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred HHHHHHHHHhcCCCEEEEc
Confidence 9999999999999999999
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=255.38 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=134.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..++.++++++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 357899999999963 5799999999999999999999999999999999999986 79999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.++ .+|++||+.+....++.. .+..+.++++++.+++.+. ...++++++||||||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred cccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 2234567899999999888 589999998765544332 3445678999999998531 24467889999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 158 v~laral~~~p~llllD 174 (261)
T PRK14263 158 LCIARAIATEPEVLLLD 174 (261)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=257.23 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=132.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 347999999999963 4699999999999999999999999999999999999863 69999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |+.||+.+....++.. ...++.++++++.+++.+ .+..++++.+||||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 223457789999999988875 9999998754444332 223456777888888741 135688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 170 v~LAraL~~~p~lllLD 186 (274)
T PRK14265 170 LCIARAIAMKPDVLLMD 186 (274)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 99999999999999999
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=283.98 Aligned_cols=154 Identities=27% Similarity=0.470 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||++.|++ ++.+|+|+||++++||.++|+||||||||||+|+|.|+++|++|+|.++|.|+++-.+..|
T Consensus 333 ~~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 333 PTLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred ceEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence 35999999999974 2359999999999999999999999999999999999999999999999999975566688
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++|||+||++.+|+. |++||+.+.. + +..+++++++++..++.+ +....+...+||||||||++
T Consensus 408 ~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 408 RRISVFAQDAHLFDT-TVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred hheEEEccCcccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 999999999999987 9999998742 1 122455677777777642 01112344579999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 481 iARall~~~~iliLD 495 (529)
T TIGR02868 481 LARALLADAPILLLD 495 (529)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=252.39 Aligned_cols=155 Identities=22% Similarity=0.403 Sum_probs=124.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2459999999999999999999999999999999999999999999999998854 344567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 789999999988886 9999998753221 1111111 122333333 443 245777899999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+++|||
T Consensus 152 ~al~~~p~llllD 164 (229)
T cd03254 152 RAMLRDPKILILD 164 (229)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=270.14 Aligned_cols=158 Identities=25% Similarity=0.363 Sum_probs=143.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
+.+++++++|+|++ .+|.++|||+|++|||.||||+||||||||+|||.|+++||+|+|+++|+.+. ...+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 57899999999984 78999999999999999999999999999999999999999999999999985 34566
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l---kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++..||++.||..|++.+||.||+.+...- ..+..++.+++++++.++.||. --.|+++.+||=|+||||.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~--vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP--VDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC--CCccceeecCCcchhHHHHHHHH
Confidence 778899999999999999999999986532 2345678889999999999997 35799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|..+|++|+||
T Consensus 155 Lyr~a~iLILD 165 (501)
T COG3845 155 LYRGARLLILD 165 (501)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=278.57 Aligned_cols=157 Identities=22% Similarity=0.400 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeecCcc-H-HH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i~~~-~-~~ 702 (800)
++++||+|.|++ +.+++++||++++||++||+||||||||||+++|+|+++| ++|+|+++|+++... . ..
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 789999999963 4699999999999999999999999999999999999987 799999999998642 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++||+.+..... + ...++..++++++++.++|.+ ...++++++|||||||||+||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998754322 1 233445667899999999963 2236789999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 155 al~~~p~lllLD 166 (500)
T TIGR02633 155 ALNKQARLLILD 166 (500)
T ss_pred HHhhCCCEEEEe
Confidence 999999999999
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=280.76 Aligned_cols=160 Identities=26% Similarity=0.442 Sum_probs=131.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||++.|+.| ++..+++|+||+|++||+++|+||||+||||+.++|-.++.|++|+|.+||+||++ +...+
T Consensus 464 G~IeF~~VsFaYP~R---p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR---PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCC---CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 469999999999986 46789999999999999999999999999999999999999999999999999986 66778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~-----~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
|++||++-|+|.||.. |++||+.+... +.+.+++...++ +.+..+.-.-+..-+++..+||||||||++|||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 9999999999999997 99999996433 334344333322 222222211112334566689999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.||+|+|||
T Consensus 618 ALlr~P~VLILD 629 (716)
T KOG0058|consen 618 ALLRNPRVLILD 629 (716)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-28 Score=257.40 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=128.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 46899999999963 2569999999999999999999999999999999999999999999999998742 1123
Q ss_pred cceEEecCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 705 ~~IGycpQ~~~L~--~~LTv~E~L~~~~~----lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
+.+||+||++.+. ...+++|++.+... ..+......++.++++++.++|. +..++++++||||||||++||+
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478888764211 11112234456788899999997 4789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 156 aL~~~p~llllD 167 (272)
T PRK15056 156 AIAQQGQVILLD 167 (272)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=258.70 Aligned_cols=161 Identities=25% Similarity=0.388 Sum_probs=134.4
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
...+|.++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4457999999999964 469999999999999999999999999999999999986 68999999999885
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--Cccc
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 759 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk------------g~~~-~~~~~~v~~~L~~l~L~~--~~~~ 759 (800)
. .....++.+||+||++.+++ .|++||+.+....+ +... ...++.++++++.+++.+ .+..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 23456778999999998887 49999998753321 1111 223567889999998842 1356
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 760 DKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 760 d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++.+||||||||++||+||+.+|+|+|||
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD 225 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMD 225 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8899999999999999999999999999999
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=280.49 Aligned_cols=156 Identities=26% Similarity=0.343 Sum_probs=133.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEEC------------
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 692 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~------------ 692 (800)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|++ +|++|+|+++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 46999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeecC-------c-c---HHHhhcceEEecCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 003716 693 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749 (800)
Q Consensus 693 -----------G~~i~-------~-~---~~~~r~~IGycpQ~-~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~ 749 (800)
|.++. . . ....++.+||+||+ +.+++.+|++||+.+.....+.+.++.+++++++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33321 0 0 12346779999997 688899999999987555556555566778999999
Q ss_pred HcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 750 ~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++|. +..++++++|||||||||+||+||+.+|+++|||
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLD 193 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLAD 193 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEee
Confidence 99996 4789999999999999999999999999999999
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=240.96 Aligned_cols=153 Identities=26% Similarity=0.417 Sum_probs=133.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++.+++++..|+. .==..+++|+.||+++|+||+|||||||+|+|+|++.|.+|+|.|+|+|.... ....|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~-~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS-PPAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC-CcccC
Confidence 3567899999964 23468899999999999999999999999999999999999999999998643 23456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
-+++++|++.||.+|||.+|+.+... -|++ ..+.+++++.++.++||. ++.++.+.+||||||||+++||+|+.+-
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccC
Confidence 79999999999999999999987422 2222 355678899999999997 5999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 149 PilLLD 154 (231)
T COG3840 149 PILLLD 154 (231)
T ss_pred CeEEec
Confidence 999999
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=249.99 Aligned_cols=153 Identities=22% Similarity=0.384 Sum_probs=125.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ...+.+
T Consensus 2 ~l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 37899999999742 2469999999999999999999999999999999999999999999999998854 344567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.+||+||++.+++ .|++||+.++.. .. .+++.+.++.+++.+ +...++.+.+||||||||++
T Consensus 78 ~~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 78 SRISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred hhEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 88999999998876 599999975432 11 234555566665542 01235689999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 150 laral~~~p~llllD 164 (221)
T cd03244 150 LARALLRKSKILVLD 164 (221)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=251.65 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=131.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCcceEEECCeecCcc-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--~~ptsG~I~i~G~~i~~~-~~ 701 (800)
.+++++||++.|++ +.+++++||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 46999999999963 4699999999999999999999999999999999998 589999999999998642 22
Q ss_pred Hhhc-ceEEecCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHH
Q 003716 702 RIYT-SMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 772 (800)
Q Consensus 702 ~~r~-~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~---~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~Kr 772 (800)
..++ .++|+||++.+++.+|++|++.+....+ +. ...+..+.++++++.+++.+ ...++.+. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 2222 5899999999999999999998643321 11 11233466788999999962 35788887 59999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+|++||
T Consensus 159 rv~la~al~~~p~llllD 176 (252)
T CHL00131 159 RNEILQMALLDSELAILD 176 (252)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999999
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-29 Score=248.22 Aligned_cols=156 Identities=28% Similarity=0.452 Sum_probs=143.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++|++|.|++ +.+++++|++|++|.+++++||||||||||+.|++.++++++|+|+++|+++.. ..++..
T Consensus 1 MI~i~nv~K~y~~------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhCC------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 5789999999974 789999999999999999999999999999999999999999999999999964 566778
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh---hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR---LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~---lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.+++.-|.+.+-..+||+|-+.| +| -+|-..++.+..++++++.++|+ +..|+...+||||||||.-||+.++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~F-GRfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhc-CCCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeee
Confidence 889999999999999999998876 33 35667788889999999999997 5999999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
++.+.+|||
T Consensus 152 QdTdyvlLD 160 (252)
T COG4604 152 QDTDYVLLD 160 (252)
T ss_pred ccCcEEEec
Confidence 999999999
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-28 Score=250.88 Aligned_cols=143 Identities=23% Similarity=0.267 Sum_probs=122.0
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCccHHHhhcceEEecCCCC--CCCCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 720 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~--L~~~L 720 (800)
+++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... +..++.+||+||++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999998542 223367999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|++|++.+.....+....+.+++++++++.+++.+. +..++++.+|||||||||+||+||+.+|+|++||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999876544443334456678999999999621 2678999999999999999999999999999999
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-28 Score=277.53 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=132.8
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHhhcc
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 706 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~r~~ 706 (800)
++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999963 5699999999999999999999999999999999999999999999999998532 2345678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~--~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+||+||++.+++.+|++||+.+... .++. ...+..++++++++.+++. ...++++++|||||||||+||+||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999986421 2222 2334456789999999997 378999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 153 p~lllLD 159 (491)
T PRK10982 153 AKIVIMD 159 (491)
T ss_pred CCEEEEe
Confidence 9999999
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=252.83 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=133.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecC--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR-- 697 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~-- 697 (800)
..|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 46899999999963 4699999999999999999999999999999999999875 7999999998763
Q ss_pred -c--cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 -T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 -~--~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~-~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++. |++||+.+.....+.... ..++.++++++.+++.+ .+..++.+.+||||||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 1 233557789999999999986 999999875444444332 33567888888888741 1356889999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 168 qrv~laral~~~p~llllD 186 (265)
T PRK14252 168 QRLCIARALATDPEILLFD 186 (265)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=259.80 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=135.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
...|+++|+++.|.+. .+.+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999631 3569999999999999999999999999999999999986 579999999999963
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~-~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
....+++.+||+||++.+++ .|++||+.+.....+...++ .++.++++++.++|.+ ....++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 22456788999999999886 79999999754444443332 3445788899988742 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|+|+|||
T Consensus 233 Rl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 233 RLCIARAIALEPEVLLMD 250 (329)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 999999999999999999
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=248.12 Aligned_cols=145 Identities=30% Similarity=0.401 Sum_probs=124.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
+.+++++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----~--- 89 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----L--- 89 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----h---
Confidence 678888888864 579999999999999999999999999999999999999999999999987631 1
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
.+...+++.+|++||+.+....++....+.+++++++++.+++. +..++++++||||||||+++|+||+.+|++
T Consensus 90 ----~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 90 ----GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ----cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11233456789999998876555555555566788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 164 lllD 167 (224)
T cd03220 164 LLID 167 (224)
T ss_pred EEEe
Confidence 9999
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=276.87 Aligned_cols=164 Identities=29% Similarity=0.354 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC-Cee---cCc--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT-- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~-G~~---i~~-- 698 (800)
.+++++||+|.|++.+ .+.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 4799999999996311 013569999999999999999999999999999999999999999999996 643 221
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---ccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~---~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++.+|++||+.+...+ +.+.++.+++++++++.++|.+. +..++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1123456799999999999999999999875333 23333345678899999999631 25789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+|+|||
T Consensus 436 v~laral~~~p~lLllD 452 (520)
T TIGR03269 436 VALAQVLIKEPRIVILD 452 (520)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=250.02 Aligned_cols=137 Identities=33% Similarity=0.465 Sum_probs=119.9
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.... ...+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999985421 12489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 728 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 728 ~~~~--lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+... ..+....+..+.++++++.++|. +..++++++||||||||++||+||+.+|+++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7532 22344445566789999999996 4789999999999999999999999999999999
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=271.78 Aligned_cols=167 Identities=26% Similarity=0.371 Sum_probs=143.0
Q ss_pred CCCcEEEEeEEEEcCCCC-----CCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~-----~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+.++++||+|.|..++ ..+...||+||||+|++||++||+|++|||||||.|+|+|+++|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 346789999999998532 123568999999999999999999999999999999999999999999999998832
Q ss_pred ---ccHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 698 ---TDMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ---~~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
.+..+.|+++-+++|++ .|.|.+||++.+.--..+++. ...+.++++.++++.++|.+ +++++++++||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 12345667788888875 699999999999876665543 34566678999999999985 689999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++|++|
T Consensus 436 QRvaIARALa~~P~lli~D 454 (539)
T COG1123 436 QRVAIARALALEPKLLILD 454 (539)
T ss_pred HHHHHHHHHhcCCCEEEec
Confidence 9999999999999999999
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=248.49 Aligned_cols=154 Identities=23% Similarity=0.438 Sum_probs=123.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2459999999999999999999999999999999999999999999999998864 3445677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+.... ....+..+ .+.+.++.+ ++. ...++++.+||||||||++||+
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999874321 11111111 122333333 333 2456778999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 151 aL~~~p~llllD 162 (236)
T cd03253 151 AILKNPPILLLD 162 (236)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=249.78 Aligned_cols=156 Identities=27% Similarity=0.477 Sum_probs=123.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++.+ ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999996421 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.+.++.+ ++. ...++++.+||||||||+++|+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 7999999998886 69999998743221 1111111 122333333 443 3567889999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 153 al~~~p~llllD 164 (238)
T cd03249 153 ALLRNPKILLLD 164 (238)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=276.71 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=132.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ...
T Consensus 264 ~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4799999998762 289999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEecCC---CCCCCCCCHHHHHHHHhhh-----c---CC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 703 IYTSMGVCPQE---DLLWETLTGREHLLFYGRL-----K---NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 703 ~r~~IGycpQ~---~~L~~~LTv~E~L~~~~~l-----k---g~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
.++.+||+||+ ..+++.+|++||+.+.... + +. ...+.++.++++++.+++.. +..++++++|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChHH
Confidence 56789999998 4688999999999864221 1 11 12233456889999999952 36899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||+||+||+.+|+|+|||
T Consensus 415 ~qrv~lAral~~~p~lLlLD 434 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFD 434 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEC
Confidence 99999999999999999999
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=229.42 Aligned_cols=130 Identities=34% Similarity=0.577 Sum_probs=115.6
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
|+|+||+|++||+++|+|+||||||||+++|+|..+|++|+|.++|.++.. .....++.++|++|++.+++.+|++|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 689999999999999999999999999999999999999999999999987 455678899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++.++++++.+++.+ ....++++.+|||||||||+||+||+.+|++++||
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34556888889888763 12334444999999999999999999999999999
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=274.99 Aligned_cols=164 Identities=19% Similarity=0.300 Sum_probs=136.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCcc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~~ 699 (800)
++++++|+++.|++.+ ..+.+++++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 4699999999996311 125799999999999999999999999999999999999986 799999999998542
Q ss_pred -H---HHhh-cceEEecCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhH
Q 003716 700 -M---DRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 770 (800)
Q Consensus 700 -~---~~~r-~~IGycpQ~~~--L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~ 770 (800)
. ...+ +.+||+||++. +++.+|++|++.+.... .+.+..+..++++++++.++|.+. +..++++++|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1 1233 57999999974 67788999998765433 245555667889999999999631 14689999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||+||+||+.+|+++|||
T Consensus 162 ~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-28 Score=232.56 Aligned_cols=157 Identities=27% Similarity=0.402 Sum_probs=143.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec--Cc-----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i--~~----- 698 (800)
.|+++++++.||. ..+|.||+|+.++||.+.|+||+|||||||+|.|.-++.|.+|+..|.|... .+
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 5889999999974 5799999999999999999999999999999999999999999999988654 22
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~-~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
...+.|+.+|+++|.-.|||+|||.|||.- -.+..|+++++...++.++|+++.|. +++|+.+-+|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 235678999999999999999999999865 45778999999999999999999997 599999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|+|++.|
T Consensus 154 ralmmkpqvllfd 166 (242)
T COG4161 154 RALMMEPQVLLFD 166 (242)
T ss_pred HHHhcCCcEEeec
Confidence 9999999999999
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=248.06 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=128.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCc-cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~-~~~~ 702 (800)
+++++||+|.|++ +.+++++||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|+++.. ....
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999963 46999999999999999999999999999999999995 6999999999998854 2222
Q ss_pred -hhcceEEecCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHH
Q 003716 703 -IYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 773 (800)
Q Consensus 703 -~r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lk---g---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrR 773 (800)
.++.+||++|++.+++.+|+.+++.+.. .+. . ....+..+.+++.++.+++.+ +..++++. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 3457999999999988888777765421 111 1 112234567788999999953 46677775 899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 154 v~laral~~~p~illLD 170 (248)
T PRK09580 154 NDILQMAVLEPELCILD 170 (248)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=254.70 Aligned_cols=150 Identities=23% Similarity=0.431 Sum_probs=129.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++||++.|++. ...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....++
T Consensus 2 ~i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 37899999999631 2469999999999999999999999999999999999998 79999999999864 455678
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCC-----------CChhHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRR 773 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~-----------LSGG~KrR 773 (800)
+.|+|+||++.+++. |++||+..+.. .. ++++.+.++.++|. ++.++.+.. ||||||||
T Consensus 77 ~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHH
Confidence 899999999999985 99999975432 11 34677888899996 467777766 99999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++||||+.+|+|++||
T Consensus 147 l~LaRall~~p~illlD 163 (275)
T cd03289 147 MCLARSVLSKAKILLLD 163 (275)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 99999999999999999
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=238.34 Aligned_cols=122 Identities=30% Similarity=0.483 Sum_probs=111.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---HHHh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 703 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---~~~~ 703 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999988642 3456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|+||++.+++.+|++|++.+. ||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999988642 999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 119 p~llilD 125 (178)
T cd03229 119 PDVLLLD 125 (178)
T ss_pred CCEEEEe
Confidence 9999999
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=274.92 Aligned_cols=162 Identities=19% Similarity=0.308 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeecCc--cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i~~--~~~ 701 (800)
.+|+++|+++.|++. +++.+++++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 469999999999421 124599999999999999999999999999999999999995 89999999999853 224
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhc---CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++++||+||+. .+++.+|++|++.+.. ... +....+.+++++++++.+++.+ ...++++++||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 4577899999995 5899999999998632 121 1222334567899999999963 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 412 v~la~al~~~p~lllLD 428 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILD 428 (500)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=238.76 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=143.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
+.++++||.|+|+. ..+|++||++..+|+++.|+|.+|+||||+++||.=++.|+.|.|.++|++|+.
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 57899999999974 679999999999999999999999999999999999999999999999998841
Q ss_pred --------cHHHhhcceEEecCCCCCCCCCCHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 699 --------~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~-~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
+..++|.++|+++|+..||.+||+.||+.-. -..-|.++.+..++++.+|.++|+. +..|.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--ek~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--EKADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--hhhhcCccccCch
Confidence 2345678899999999999999999998753 2344788889999999999999998 4789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
|+||++|||||+.+|+++|.|
T Consensus 157 QQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred HHHHHHHHHHHhcCCceEeec
Confidence 999999999999999999999
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=241.75 Aligned_cols=145 Identities=24% Similarity=0.389 Sum_probs=121.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. .+.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 358999999999742 2469999999999999999999999999999999999999999999999998853 33456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||+||++.+++ .|++||+.++.. .. .+.+.+.++ .++++.+||||||||+++||||+.+
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~~~l~~~~~---~~----~~~~~~~l~---------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFS-GTIRSNLDPFDE---YS----DEEIYGALR---------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccC-ccHHHHhcccCC---CC----HHHHHHHhh---------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 778999999998887 499999975421 11 122334433 2567899999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 144 p~llllD 150 (207)
T cd03369 144 PRVLVLD 150 (207)
T ss_pred CCEEEEe
Confidence 9999999
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=275.81 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=136.0
Q ss_pred CcEEEEeEEEEcCCCCC-----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc
Q 003716 625 HAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~-----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~ 699 (800)
.+++++||++.|+...+ ...+.+++++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 46999999999963110 012569999999999999999999999999999999999995 899999999988531
Q ss_pred -H---HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -~---~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
. ...++.+||+||++ .+++.+|++||+.+....++ .+..+.+++++++++.++|.+ +..++++++||||||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQR 431 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHHH
Confidence 1 22356799999996 58889999999987543332 344455677899999999962 367999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||+||+||+.+|+++|||
T Consensus 432 qrv~la~al~~~p~llllD 450 (529)
T PRK15134 432 QRIAIARALILKPSLIILD 450 (529)
T ss_pred HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999999
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=239.93 Aligned_cols=132 Identities=30% Similarity=0.489 Sum_probs=115.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.++++||+|.|++..+...+.+++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 478999999997421111256999999999999999999999999999999999999 9999999999999864 256
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|+||++.+++.+|++||+.+..+++ +||||||||+++||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 778999999999999999999997642210 7999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 130 p~illlD 136 (194)
T cd03213 130 PSLLFLD 136 (194)
T ss_pred CCEEEEe
Confidence 9999999
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=249.68 Aligned_cols=141 Identities=26% Similarity=0.392 Sum_probs=122.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 36899999999963 4699999999999999999999999999999999999999999999986 2
Q ss_pred cceEEecCCCCCCCCC--CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETL--TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~L--Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..+||+||++.+++.+ |++|++.+.. +. .++++.++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999998887764 7777765421 11 134678899999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 138 ~p~lllLD 145 (251)
T PRK09544 138 RPQLLVLD 145 (251)
T ss_pred CCCEEEEe
Confidence 99999999
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=235.21 Aligned_cols=120 Identities=42% Similarity=0.694 Sum_probs=110.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.....+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 36999999999999999999999999999999999999999999999999886433456778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+. ||||||||++||+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999974 999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 117 lllD 120 (173)
T cd03230 117 LILD 120 (173)
T ss_pred EEEe
Confidence 9999
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=278.84 Aligned_cols=152 Identities=23% Similarity=0.383 Sum_probs=125.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++|+++.|.+ ++.+++|+||++++||.++|+|+||||||||+++|+|++ |++|+|.++|+++.+ +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5999999976643 256999999999999999999999999999999999999 999999999999975 567789
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++||||||++.+|+. |++||+.+.. ...+ +++++++++..++.+ +....+...+||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999987 9999999742 1223 334445555444421 01234456679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 496 lARAll~~~~IliLD 510 (588)
T PRK11174 496 LARALLQPCQLLLLD 510 (588)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=266.42 Aligned_cols=158 Identities=23% Similarity=0.319 Sum_probs=141.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~-~~ 702 (800)
+.++++|++|.|++ .+||+++||++++||++||+|.||||||||+|+|+|.++|++|+|+++|+.+.. .. +.
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 46889999999985 689999999999999999999999999999999999999999999999999863 33 44
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
....|+.++|+..|.|+|||.||+.+....+ -+.++...++++++|+.+++.. + .+.++++||+||||.|.|||
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998654332 2566788899999999999963 3 89999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||..+++||+||
T Consensus 159 Al~~~arllIlD 170 (500)
T COG1129 159 ALSFDARVLILD 170 (500)
T ss_pred HHhcCCCEEEEc
Confidence 999999999999
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=235.73 Aligned_cols=143 Identities=27% Similarity=0.418 Sum_probs=132.0
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 722 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv 722 (800)
+..+|+++||++.+||..+|.||+|||||||+|+++-+++||+|++++.|+++.+ ..+..|++|+||-|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 3579999999999999999999999999999999999999999999999999976 667889999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++||.|--++++-.. .+.+..++|+++++.+ ..+++++.+||||||||++++|-|.-.|+|+|||
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 999999877775332 4567888999999986 6899999999999999999999999999999999
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=282.86 Aligned_cols=156 Identities=22% Similarity=0.424 Sum_probs=129.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...++++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...
T Consensus 469 ~g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 469 QGEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred CceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHH
Confidence 3469999999999853 2369999999999999999999999999999999999999999999999999975 7788
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
+|++|||++|++.||.. |++||+.+.... .+ .+++.++++..|..+ +....+....||||||||
T Consensus 545 lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 545 LRRQVGYVLQDPFLFSG-SIRENIALGNPE--AT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HHhheeEEcccchhhcC-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 99999999999999987 999999974321 11 233333333333321 123345667899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+|++||
T Consensus 618 lalARaLl~~P~ILlLD 634 (709)
T COG2274 618 LALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHHhccCCCEEEEe
Confidence 99999999999999999
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=281.59 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=129.6
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--cceEEECCeecCccHHHhhcc
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt--sG~I~i~G~~i~~~~~~~r~~ 706 (800)
++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. +.+++
T Consensus 71 ~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~ 141 (659)
T PLN03211 71 ISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKR 141 (659)
T ss_pred cccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccc
Confidence 456677775 357999999999999999999999999999999999999985 8999999998743 34567
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCccc-----cccCCCCChhHHHHHHHHH
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~-----d~~~~~LSGG~KrRLsiA~ 778 (800)
+||++|++.+++.+||+|++.+.+.++ ....++.+++++++++.+||.+ .+ ++.+++||||||||++||+
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHHH
Confidence 999999999999999999999877654 2233455677899999999963 44 4567889999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+|++||
T Consensus 220 aL~~~P~iLlLD 231 (659)
T PLN03211 220 EMLINPSLLILD 231 (659)
T ss_pred HHHhCCCEEEEe
Confidence 999999999999
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=239.27 Aligned_cols=158 Identities=28% Similarity=0.372 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECC-eecCc--cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRT--DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G-~~i~~--~~~ 701 (800)
..+.+++|+..|++ ..||+++||+|.+||.-+|+|||||||||++.+|+|..+|+.|+++++| .|+.. +.+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46899999999985 6799999999999999999999999999999999999999999999999 88865 334
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.+|..||--+|.+..|+.+||+|||.+..+ +..-...+.+.+++++|+..+|. +.+|..++.||.||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~--~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG--DERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc--hhhhhhhhhhccchhhh
Confidence 456778999999999999999999997432 22222345567899999999998 48999999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|.|++-++++|++++||
T Consensus 156 LEIGMll~Q~P~lLLlD 172 (249)
T COG4674 156 LEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhheeeccCCcEEEec
Confidence 99999999999999999
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=248.00 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=131.3
Q ss_pred CcEEEEeEEEEcCCCC--------------CCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE
Q 003716 625 HAIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~--------------~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~ 690 (800)
..|+++||+|.|.... .+..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4688999999997531 12346799999999999999999999999999999999999999999999
Q ss_pred ECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 691 i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
++|. +++++|...+.+.+|++||+.+.....+...++..+.++++++.+++. +..++++++|||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq 148 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGM 148 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence 9984 457788877888899999998765555555556666778899999996 47899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||+++|+||+.+|+++|||
T Consensus 149 ~qrv~Laral~~~p~iLlLD 168 (264)
T PRK13546 149 RAKLGFSINITVNPDILVID 168 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEe
Confidence 99999999999999999999
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=272.06 Aligned_cols=162 Identities=20% Similarity=0.348 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCcceEEECCeecCcc--HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--MD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-ptsG~I~i~G~~i~~~--~~ 701 (800)
.+|+++||+|.|+.. +.+.+++|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|+++|+++... .+
T Consensus 258 ~~l~~~~l~~~~~~~---~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTAWDPVN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCccccccc---cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 469999999999521 12469999999999999999999999999999999999998 5999999999998532 23
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++.+||+||++ .+++.+|+.||+.+.. .+.+ ....+.+++++++++.+++.+ +..++++++||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHHH
Confidence 4567799999995 5888999999998642 2221 123344567899999999952 36899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 414 v~lA~al~~~p~lllLD 430 (506)
T PRK13549 414 AVLAKCLLLNPKILILD 430 (506)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=280.55 Aligned_cols=154 Identities=25% Similarity=0.411 Sum_probs=130.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||++.|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||++++. +.+.+
T Consensus 450 ~~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred ceEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence 369999999999642 3569999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||||||++.+|+. |++||+.+... . .++++.++++..++.+ +....+...+||||||||+
T Consensus 526 r~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSG-SIFENIAGGAP---L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred HhccEEEccCCccCcc-cHHHHHhcCCC---C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987422 2 2445667777776642 0112234567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 598 alARAll~~p~iLiLD 613 (686)
T TIGR03797 598 LIARALVRKPRILLFD 613 (686)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=242.46 Aligned_cols=150 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHH
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 702 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~ 702 (800)
.+.|+.+.|++ .+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 57899999974 24699999999999999999999999999999999999999999999999987531 123
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||++|++.++ ..|++||+.+.... . .+..++.++.+++.+ +...++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---N----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---C----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 456799999999888 57999999874321 1 122344455555431 012456789999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 149 v~laral~~~p~illlD 165 (218)
T cd03290 149 ICVARALYQNTNIVFLD 165 (218)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 99999999999999999
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=235.79 Aligned_cols=123 Identities=27% Similarity=0.471 Sum_probs=109.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|+++ ++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999642 136999999999999999999999999999999999999999999999999875433445678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++ .|++||+ +.+||||||||++||||++.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 120 lllD 123 (178)
T cd03247 120 VLLD 123 (178)
T ss_pred EEEE
Confidence 9999
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=247.76 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=121.6
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
+|+|+||++++||++||+|+||||||||+++|+|++++ +|+|+++|+++.. ...+.++.+||+||++.+++.+|++||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 79999999999999999999999999999999999864 9999999999854 334556679999999988888999999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC-------CCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig-------~P~vlLLD 790 (800)
+.+.... +....+..+.++++++.++|. +..++++++||||||||++||+||+. +|+++|||
T Consensus 90 l~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 90 LTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9876322 223344566789999999996 47899999999999999999999998 67999999
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-27 Score=234.62 Aligned_cols=122 Identities=23% Similarity=0.338 Sum_probs=110.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++|++|.| +++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... .+.
T Consensus 3 ~~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH
Confidence 368999999987 79999999999999999999999999999999999999999999999998653 234
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
.++.+||+||+. .+++.+|++||+.+... ||||||||+++|+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHH
Confidence 567899999984 58888999999976421 99999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 119 l~~~p~llllD 129 (182)
T cd03215 119 LARDPRVLILD 129 (182)
T ss_pred HccCCCEEEEC
Confidence 99999999999
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=272.65 Aligned_cols=154 Identities=25% Similarity=0.444 Sum_probs=130.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++|+++.|++. ++++++|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.+ +.+..|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 69999999999752 2469999999999999999999999999999999999999999999999999975 557788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+++||+||++.+|+. |++||+.+... .. .+++++++++..++.+ +....+...+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP--DA----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999985 99999987431 11 2345666777766642 01223456789999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 469 laRal~~~~~ililD 483 (529)
T TIGR02857 469 LARAFLRDAPLLLLD 483 (529)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=282.98 Aligned_cols=155 Identities=21% Similarity=0.361 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++++|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.. +.+.+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 469999999999752 3569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.++.. ..+ ++++.++++..++.+ +....+....||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122 344555566555532 0123345577999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 625 aLARall~~p~iliLD 640 (710)
T TIGR03796 625 EIARALVRNPSILILD 640 (710)
T ss_pred HHHHHHhhCCCEEEEE
Confidence 9999999999999999
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=239.59 Aligned_cols=143 Identities=24% Similarity=0.379 Sum_probs=114.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||+|.|+++.+ ..+.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 468999999974210 013699999999999999999999999999999999999999999999998 5
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCccccccCCCCChhHHHHHHHH
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~---------~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
|||+||++.+++ +|++||+.+.... ..+ ...+.++.+++. .+...++++.+||||||||++||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CHH----HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999884 6999999874322 111 122223222221 01245678899999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 140 ral~~~p~llllD 152 (204)
T cd03250 140 RAVYSDADIYLLD 152 (204)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=281.35 Aligned_cols=156 Identities=23% Similarity=0.445 Sum_probs=130.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|+++ +++.+++|+||+|++||.++|+|||||||||++|+|.|+++|++|+|++||+++++ +.+..
T Consensus 477 ~~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR---PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCC---CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 359999999999753 23579999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++|||.+... ..+ ++++.++++..++.+ +...++...+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999986421 112 445666677666542 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 627 alARALl~~p~ILILD 642 (711)
T TIGR00958 627 AIARALVRKPRVLILD 642 (711)
T ss_pred HHHHHHhcCCCEEEEE
Confidence 9999999999999999
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=274.57 Aligned_cols=153 Identities=26% Similarity=0.413 Sum_probs=132.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++++ +.+..
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 459999999999742 2469999999999999999999999999999999999999999999999999976 56678
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc----------ccCCCCChhHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 773 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d----------~~~~~LSGG~KrR 773 (800)
|+.|||+||++.+|+. |++||+.+... +..+++++++++.+++.+ ..+ +...+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987431 123557788888888863 322 2566799999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||||++.+|++++||
T Consensus 484 ialARall~~~~ililD 500 (574)
T PRK11160 484 LGIARALLHDAPLLLLD 500 (574)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=262.44 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=131.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|++..|+. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|+|||+|+++ ..+.
T Consensus 349 ~~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES 422 (591)
T ss_pred CCcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH
Confidence 346999999999984 3569999999999999999999999999999999999999 99999999999976 6677
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---------ccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---------GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~---------~~~d~~~~~LSGG~KrR 773 (800)
.|+.|||+||+..||++ |+.+|+.+. ... ...++|.+..++.++.+. ....++...||||||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YG-n~s-----as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr 495 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYG-NPS-----ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR 495 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcC-CCC-----cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH
Confidence 89999999999999998 999999853 221 224566777777777530 11344566899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|++|||++.||+|+++|
T Consensus 496 vslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 496 VSLARAFLKDAPILLLD 512 (591)
T ss_pred HHHHHHHhcCCCeEEec
Confidence 99999999999999999
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=247.62 Aligned_cols=162 Identities=24% Similarity=0.360 Sum_probs=139.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CcceEEECCeecCcc--
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTD-- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-p----tsG~I~i~G~~i~~~-- 699 (800)
++++||+..|...++ ...||+||||+|++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|+++..-
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999976433 4689999999999999999999999999999999999998 4 679999999998542
Q ss_pred --HHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHH
Q 003716 700 --MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (800)
Q Consensus 700 --~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg-~-~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~K 771 (800)
+.++| +.|+++||++ .|.|-+|+.+.+.-..+.++ . .+++..+++.++|+.++|.+. ...+.++.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 22444 5799999995 68999999999987666543 3 456778899999999999852 377999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||.||+||+.+|++|+.|
T Consensus 160 QRV~IAmala~~P~LlIAD 178 (316)
T COG0444 160 QRVMIAMALALNPKLLIAD 178 (316)
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 9999999999999999999
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-27 Score=274.80 Aligned_cols=155 Identities=19% Similarity=0.381 Sum_probs=128.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++. ++.+++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..+
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3569999999999999999999999999999999999999999999999999975 556788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.|||+||++.+|+. |++||+.+.. +.+..+++++++++..++.+ +....+...+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999986 9999998642 11112445666666666431 01223344679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 491 LARall~~~~ililD 505 (582)
T PRK11176 491 IARALLRDSPILILD 505 (582)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999999999999999
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=281.94 Aligned_cols=155 Identities=19% Similarity=0.344 Sum_probs=128.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|+++|.++.+ +.+..
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 46999999999963 2469999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.+... ...+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999997532 1222 334455555554421 1123445678999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 621 alARall~~p~iliLD 636 (708)
T TIGR01193 621 ALARALLTDSKVLILD 636 (708)
T ss_pred HHHHHHhhCCCEEEEe
Confidence 9999999999999999
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=246.77 Aligned_cols=144 Identities=28% Similarity=0.391 Sum_probs=133.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEec-CCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycp-Q~~~L~~~LTv~ 723 (800)
..||+||||+|++||++|++|+||||||||+|||+|++.|++|.|.++|++...+.++.-+++|++. |.-.+|-++.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 4699999999999999999999999999999999999999999999999998776666667888875 777888888899
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|.+..-..++.++.++-+++.+.+.+.++|+ +..+.+++.||-|||+|+.+|.||+++|+|+|||
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLD 181 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD 181 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 9999888889999999999999999999997 5899999999999999999999999999999999
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=247.15 Aligned_cols=156 Identities=17% Similarity=0.267 Sum_probs=125.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. .+.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 569999999999642 2469999999999999999999999999999999999999999999999999864 34556
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
++.+||+||++.+++. |++||+..... .......+ .+++.++.+ ++. ...++.+.+||||||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999988874 99999864211 01111111 133444444 454 35677889999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|++++||
T Consensus 168 aral~~~p~llllD 181 (257)
T cd03288 168 ARAFVRKSSILIMD 181 (257)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=273.55 Aligned_cols=153 Identities=20% Similarity=0.323 Sum_probs=130.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++ ++.+++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+..
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.++. ..+ +++++++++.+|+.+ +....+....||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999998 9999999853 222 345666777766542 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 486 alARaLl~~~~illlD 501 (592)
T PRK10790 486 ALARVLVQTPQILILD 501 (592)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 9999999999999999
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-27 Score=268.78 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 5899999999964 459999999999999999999999999999999999999999999999987743 233445
Q ss_pred cceEEecCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 705 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 705 ~~IGycpQ~~~L--~-~-----~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.++|. ++.++++++|||||||||+|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998643 1 1 46888877531 12356788999999996 47899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|+||+.+|+++|||
T Consensus 147 a~al~~~p~lllLD 160 (490)
T PRK10938 147 CQALMSEPDLLILD 160 (490)
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999999
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=272.24 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=141.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~- 702 (800)
.+++++|+++.|++.+ +.+.+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 3689999999996421 135699999999999999999999999999999999999999999999999998652 222
Q ss_pred --h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 --I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 --~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
. ++.+||+||+..+++++|+.||+.+.....+...++.++++.++++.++|. +..|+++++||||||||++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2 468999999999999999999998765555555566677889999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|++++||
T Consensus 159 L~~~P~lLllD 169 (648)
T PRK10535 159 LMNGGQVILAD 169 (648)
T ss_pred HhcCCCEEEEE
Confidence 99999999999
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=233.87 Aligned_cols=129 Identities=25% Similarity=0.382 Sum_probs=113.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.++++|+++.|++.. .++.+++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 588999999996421 1256999999999999999999999999999999999986 489999999999885 455
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|++|++.+++.+|++||+.+....+ +||||||||+++|+||+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------cCCHHHhHHHHHHHHHhcC
Confidence 678999999999999999999998632100 7999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 127 p~vlllD 133 (192)
T cd03232 127 PSILFLD 133 (192)
T ss_pred CcEEEEe
Confidence 9999999
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=230.28 Aligned_cols=120 Identities=33% Similarity=0.626 Sum_probs=108.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++. ++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999642 2469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|++|++.+++. |++||+ ||||||||++||+||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988874 999987 99999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 117 ~lllD 121 (173)
T cd03246 117 ILVLD 121 (173)
T ss_pred EEEEE
Confidence 99999
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=268.00 Aligned_cols=157 Identities=28% Similarity=0.503 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999865 45667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHH-----HHHHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-----VEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~-----v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
|+.+||+||++.+++. |++||+.++.. ..+.++..+. +++.++.+ |+. ...++...+||||||||+++
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8899999999999987 99999986431 1222332222 23445554 343 34567788999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|||++.+|++++||
T Consensus 466 ARall~~~~ililD 479 (544)
T TIGR01842 466 ARALYGDPKLVVLD 479 (544)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=229.64 Aligned_cols=120 Identities=31% Similarity=0.622 Sum_probs=107.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|++|.|+++ ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998854 3345567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++ .|++||+ ||||||||+++|+||+.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998886 5999887 99999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 117 llllD 121 (171)
T cd03228 117 ILILD 121 (171)
T ss_pred EEEEE
Confidence 99999
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=268.62 Aligned_cols=148 Identities=27% Similarity=0.330 Sum_probs=126.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
++|+++||+|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 57999999999962 256999999999999999999999999999999999999999999999751
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 748 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~-lk-------------g~~~----------------------~~~~~~v~~~L 748 (800)
..|||+||++.+++.+|++|++.+... ++ +... .+.++++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999986321 10 1110 11245688899
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.++|. ..++++++|||||||||+||+||+.+|+++|||
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 999994 368999999999999999999999999999999
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=237.17 Aligned_cols=135 Identities=30% Similarity=0.452 Sum_probs=121.3
Q ss_pred CcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCH
Q 003716 643 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722 (800)
Q Consensus 643 ~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv 722 (800)
..+.||+||||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|+--. - + .+| -.+-+++|+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-l---i--~lg-----~Gf~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-L---I--ELG-----AGFDPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-h---h--hcc-----cCCCcccch
Confidence 3578999999999999999999999999999999999999999999999986321 0 0 011 124567899
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+||+.+.+.+.|++++++++.++++.+.-+|. ++.|+++++||.||+-||++|+|...+|+|+|||
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD 172 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe
Confidence 99999999999999999999999999999996 5999999999999999999999999999999999
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=269.32 Aligned_cols=156 Identities=26% Similarity=0.487 Sum_probs=128.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ ++++++|+||++++||.+||+||+||||||+++.|.|+++|++|+|++||+|++. +.+..
T Consensus 327 ~~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 327 GSIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CeEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34999999999974 3679999999999999999999999999999999999999999999999999976 66788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH-----HHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE-----SLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~-----~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
|++|||+||++.||. -|++||+.+...- .+++++.++++. .++.+ |++ ....+....||||||||++|
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~d--t~vge~G~~LSgGQrQrlai 476 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYD--TIVGERGVNLSGGQRQRLAI 476 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccc--ceecCCCccCCHHHHHHHHH
Confidence 999999999999999 5999999975321 233333333222 23333 232 23344556899999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|||++.+|+|++||
T Consensus 477 ARall~~~~ILILD 490 (567)
T COG1132 477 ARALLRNPPILILD 490 (567)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=275.69 Aligned_cols=155 Identities=24% Similarity=0.435 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+++|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+..
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 469999999999742 3569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||||||++.+|+. |++|||.+... ..+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122 344555555555431 0123345668999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 611 alARall~~p~iliLD 626 (694)
T TIGR03375 611 ALARALLRDPPILLLD 626 (694)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=265.75 Aligned_cols=148 Identities=22% Similarity=0.330 Sum_probs=125.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. +
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999963 46999999999999999999999999999999999999999999999873 3
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 753 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~-l----------kg~~---------------------~~~~~~~v~~~L~~l~L 753 (800)
.+||+||++.+++.+|++|++.+... . .+.+ ..+.+++++++++.++|
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999875210 0 0100 11234578899999999
Q ss_pred CCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 754 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 754 ~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+ ...++++++|||||||||+||+||+.+|+|+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLD 180 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLD 180 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 63 2346789999999999999999999999999999
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=258.60 Aligned_cols=149 Identities=26% Similarity=0.350 Sum_probs=127.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.++.++||++.|+++ ..+.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--------
Confidence 468899999888652 135799999999999999999999999999999999999999999999999752
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
.++ +...+.+.+|++||+.+.....+....+..+.++++++.+++. +..++++++||||||||++|||||+.+|
T Consensus 89 -~i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIA---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEE---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 122 2345677799999998866555555556667788999999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 163 ~LLLLD 168 (549)
T PRK13545 163 DILVID 168 (549)
T ss_pred CEEEEE
Confidence 999999
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=231.94 Aligned_cols=121 Identities=31% Similarity=0.560 Sum_probs=108.8
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcc
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~ 706 (800)
+++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 36899999963 469999999999999999999999999999999999999999999999999864 33455667
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+|| +++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998 67778886 367889999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 119 lllD 122 (180)
T cd03214 119 LLLD 122 (180)
T ss_pred EEEe
Confidence 9999
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=263.53 Aligned_cols=160 Identities=20% Similarity=0.208 Sum_probs=128.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeecCc--cH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 700 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i~~--~~ 700 (800)
..+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 357999999999963 4699999999999999999999999999999999998876 79999999987632 22
Q ss_pred HHhhcceEEecCCCCCCC--CCCHHHHHHHHh----hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWE--TLTGREHLLFYG----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~--~LTv~E~L~~~~----~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
...++.+||++|++.++. ..+++|++.+.. ..++....+.++.++++++.++|.+ +..++++++|||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 345678999999876544 346766654321 1111112334567899999999962 268999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|+||+.+|+++|||
T Consensus 411 ~la~al~~~p~lllLD 426 (490)
T PRK10938 411 LIVRALVKHPTLLILD 426 (490)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=279.42 Aligned_cols=157 Identities=32% Similarity=0.552 Sum_probs=127.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|+.++|+.| ++..+++|+||.|++||+++|+|||||||||++++|.+++.|++|+|+|||.|+++ +.+.
T Consensus 348 ~g~ief~nV~FsYPsR---pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR---PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred ccceEEEEEEecCCCC---CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence 3469999999999986 35789999999999999999999999999999999999999999999999999986 6677
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~-------~--~~~~d~~~~~LSGG~KrR 773 (800)
.|++||.|.|+|.||.. |++||+.+.. +. ..+++++++.+..+.. + +....++.-+||||||||
T Consensus 425 lr~~iglV~QePvlF~~-tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLFAT-TIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred HHhhcCeeeechhhhcc-cHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 89999999999998875 9999998632 11 1223333333332211 0 012233444699999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+|||||
T Consensus 498 IAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLD 514 (1228)
T ss_pred HHHHHHHHhCCCEEEec
Confidence 99999999999999999
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=278.34 Aligned_cols=155 Identities=28% Similarity=0.502 Sum_probs=132.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++||++.|+.| |+.++++|+||+|++||.+||+||+||||||.+.+|-..+.|++|+|.|||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 57889999999999999999999999999999999999999999999999999987 778899
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-------CCC--CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-------LFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~-------L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
++||.|.|+|.||.. |++||+.+. ..+ ++. +++.++++..+ |.+ +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs~----~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VSE----EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CCH----HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999997 999999964 222 443 34444444443 322 12334456689999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||||++.||||||||
T Consensus 1137 IARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLD 1151 (1228)
T ss_pred HHHHHHcCCCeeeee
Confidence 999999999999999
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=262.90 Aligned_cols=154 Identities=25% Similarity=0.365 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
..++++|+++ .+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .+.
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4688999874 269999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L~~~~~--lk---g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||+||++ .+++.+|++||+.+... .. + ...++.+++++++++.++|.+ +..++++++||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999995 58889999999986321 11 1 222344567899999999952 36899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 404 v~lA~al~~~p~lllLD 420 (501)
T PRK10762 404 VAIARGLMTRPKVLILD 420 (501)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=225.90 Aligned_cols=116 Identities=28% Similarity=0.355 Sum_probs=104.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +.
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 57
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||++|++.++ .+|++||+.+. ++.+||||||||+++||||+.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998765 57999998752 2478999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 113 lllD 116 (166)
T cd03223 113 VFLD 116 (166)
T ss_pred EEEE
Confidence 9999
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=256.49 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=141.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----cceEEECCeecCc--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt----sG~I~i~G~~i~~-- 698 (800)
..++++||++.|....+ ...||+||||+|.+||++||+|.+||||||+.++|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~--~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCc--ceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 47999999999986522 367999999999999999999999999999999999999987 8999999998853
Q ss_pred --cHHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 699 --DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 --~~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
.+.++| +.|+|+||++ .|.|-+|+.+++.-..++++ ..+++.++++.++|+.++|.+.+..++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 233344 6799999996 46777999999987666654 45788899999999999998643336799999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|+.||+||+.+|++|++|
T Consensus 162 Rv~iAmALa~~P~LLIaD 179 (539)
T COG1123 162 RVMIAMALALKPKLLIAD 179 (539)
T ss_pred HHHHHHHHhCCCCEEEEC
Confidence 999999999999999999
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-26 Score=268.18 Aligned_cols=156 Identities=20% Similarity=0.371 Sum_probs=129.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..
T Consensus 329 ~~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CeEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999865 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
+++++||||++.+|+. |++|||.++. .+.. .+++++++++.+++.+ +.........||||||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAYGR-TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HhhceEEccCcccccc-cHHHHHhcCC-CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 8899999999999987 9999998753 1112 2445666677666532 0112233457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 479 aLARall~~~~illLD 494 (571)
T TIGR02203 479 AIARALLKDAPILILD 494 (571)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=270.21 Aligned_cols=143 Identities=29% Similarity=0.454 Sum_probs=127.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|+++.. ...++.+|||||+|.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998753 35678899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC------CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 721 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 721 Tv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~------~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||+|||.|.+.++. ..+++.+++++++++.+||.+ .+|++++ .|||||||||+||+||+.+|+|++||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 99999999887653 334566778999999999974 6788876 49999999999999999999999999
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-26 Score=264.05 Aligned_cols=148 Identities=28% Similarity=0.355 Sum_probs=124.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ .+++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47899999999962 24699999999999999999999999999999999999999999999875 2
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 748 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~-lk-------------g~~~~~----------------------~~~~v~~~L 748 (800)
..|||+||++.+++.+|++||+.+... .+ +.+..+ ..+++++++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999986311 10 111111 224567788
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.+++. ..++++++|||||||||+||+||+.+|+++|||
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888884 368999999999999999999999999999999
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=225.70 Aligned_cols=164 Identities=26% Similarity=0.339 Sum_probs=140.1
Q ss_pred cEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHH
Q 003716 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~ 701 (800)
.++++||+|.|..+.+ +....||+.|||++++|+..|++|.||+|||||.|||+|+++||+|+|.+||+.+.- +..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 5788999999976432 234679999999999999999999999999999999999999999999999999864 333
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++|-+++|++ .+.|.+.+-+-|..-.++. .+...+..+++.+.|+.+||.+ ++++-+++.||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 3346799999997 4778888777777654442 4556777888999999999986 7999999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+|++.|
T Consensus 163 ALIL~P~iIIaD 174 (267)
T COG4167 163 ALILRPKIIIAD 174 (267)
T ss_pred HHhcCCcEEEeh
Confidence 999999999999
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=266.57 Aligned_cols=156 Identities=23% Similarity=0.466 Sum_probs=128.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++.+ ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.+ +....
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3699999999997521 2569999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
++.||||||++.+++. |++||+.+... .. .++++++.++.+++.+ +....+....||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLFAA-SVMENIRYGRP--DA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 8899999999999986 99999986421 11 2345666666665531 0122344567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|||++.+|++++||
T Consensus 486 ~laRal~~~~~ililD 501 (576)
T TIGR02204 486 AIARAILKDAPILLLD 501 (576)
T ss_pred HHHHHHHhCCCeEEEe
Confidence 9999999999999999
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-26 Score=264.69 Aligned_cols=148 Identities=27% Similarity=0.364 Sum_probs=126.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 357999999999963 4699999999999999999999999999999999999999999999843 2
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||+||+. .+++.+|++|++.+.....+.... ...++++++.+++.+ ...++++++|||||||||+||+||+.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1599999996 788999999999876433332221 234567899999962 35799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 463 ~p~lllLD 470 (556)
T PRK11819 463 GGNVLLLD 470 (556)
T ss_pred CCCEEEEc
Confidence 99999999
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-26 Score=260.84 Aligned_cols=157 Identities=19% Similarity=0.296 Sum_probs=130.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+|+++||++.+ +.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|+++|.++... .+.
T Consensus 249 ~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 478999999874 2489999999999999999999999999999999999999999999999998642 233
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L-----~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||+||+. .+++++|+.+|. .++....+. .....++.++++++.+++.+ +..++++.+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHHH
Confidence 467799999984 478889888773 322222232 23445667889999999952 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+|++.+|+|+|||
T Consensus 400 v~la~al~~~p~illLD 416 (491)
T PRK10982 400 VIIGRWLLTQPEILMLD 416 (491)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=262.55 Aligned_cols=154 Identities=21% Similarity=0.335 Sum_probs=129.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~ 703 (800)
.+++++++. +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....
T Consensus 257 ~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 578888862 138999999999999999999999999999999999999999999999998853 23345
Q ss_pred hcceEEecCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~---~L~~~LTv~E~L~~~~~lk----g--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++.+||+||++ .+++.+|+.||+.+....+ + .+....++.++++++.+++.+ +..++++++|||||||||
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQKA 405 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHHH
Confidence 67899999985 4889999999998633211 1 122233457889999999942 468999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+|+|||
T Consensus 406 ~la~al~~~p~lllLD 421 (501)
T PRK11288 406 ILGRWLSEDMKVILLD 421 (501)
T ss_pred HHHHHHccCCCEEEEc
Confidence 9999999999999999
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-26 Score=230.92 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=108.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCcceEEECCeecCcc-HHH-
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--~~ptsG~I~i~G~~i~~~-~~~- 702 (800)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999963 4699999999999999999999999999999999999 589999999999998652 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|+||+.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999888888766 11235799999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 122 ~p~illlD 129 (200)
T cd03217 122 EPDLAILD 129 (200)
T ss_pred CCCEEEEe
Confidence 99999999
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-26 Score=262.51 Aligned_cols=144 Identities=25% Similarity=0.321 Sum_probs=125.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred cceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
+.+||+||+.. +++.+|++|++.++.. . ...+++++++++.+++.. +..++++++||||||||++||+||+.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 6678999999875421 1 122456889999999952 36899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 456 ~p~lllLD 463 (530)
T PRK15064 456 KPNVLVMD 463 (530)
T ss_pred CCCEEEEc
Confidence 99999999
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=264.52 Aligned_cols=154 Identities=21% Similarity=0.385 Sum_probs=127.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ .+.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+..
T Consensus 333 ~~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 333 GAVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred CeEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 35999999999964 2358999999999999999999999999999999999999999999999999975 45678
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+++. |++||+.+.. ...+ ++++.++++.+++.+ +....+....||||||||+
T Consensus 408 r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 408 RRNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred HhheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 8999999999999986 9999998742 1122 334555555555421 0122344567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 481 alARall~~~~iliLD 496 (588)
T PRK13657 481 AIARALLKDPPILILD 496 (588)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=228.26 Aligned_cols=157 Identities=25% Similarity=0.349 Sum_probs=135.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+.+||+..-.+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 4788999999875 579999999999999999999999999999999999999999999999999865 445556
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~--~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++-++.||+..+-...||+|-+.+...-++...+ +..+.++++|...++. .++.+...+|||||||||.+||.|++
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 7789999998886667999999986544433233 5556689999999997 48999999999999999999999975
Q ss_pred ------CCcEEEEc
Q 003716 783 ------NPKVRLSL 790 (800)
Q Consensus 783 ------~P~vlLLD 790 (800)
+++++|||
T Consensus 153 l~~~v~~~r~L~LD 166 (259)
T COG4559 153 LWPPVPSGRWLFLD 166 (259)
T ss_pred ccCCCCCCceEEec
Confidence 56689999
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=263.53 Aligned_cols=156 Identities=21% Similarity=0.343 Sum_probs=126.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+..
T Consensus 333 ~~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 333 GAVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CeEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 35999999999974 2458999999999999999999999999999999999999999999999999865 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~-----~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
++.+||+||++.+++. |++||+.++.. ..+.++..+..+ +.+..+ |+. ...++...+||||||||++|
T Consensus 408 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~l 482 (585)
T TIGR01192 408 RKSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAI 482 (585)
T ss_pred HhheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHH
Confidence 8899999999999974 99999987531 122233322221 122222 232 24556778899999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|++++||
T Consensus 483 ARall~~p~ililD 496 (585)
T TIGR01192 483 ARAILKNAPILVLD 496 (585)
T ss_pred HHHHhcCCCEEEEE
Confidence 99999999999999
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=262.82 Aligned_cols=148 Identities=27% Similarity=0.347 Sum_probs=126.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 357999999999963 4699999999999999999999999999999999999999999999843 2
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||+||+. .+++.+|++|++.+.....+.... +..++++++.+++.+ ...++++++|||||||||+||+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588899999999876433333221 234567899999952 35799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 461 ~p~lllLD 468 (552)
T TIGR03719 461 GGNVLLLD 468 (552)
T ss_pred CCCEEEEe
Confidence 99999999
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-26 Score=264.41 Aligned_cols=154 Identities=19% Similarity=0.353 Sum_probs=127.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++++++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. +.+..|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 58999999999742 2469999999999999999999999999999999999999999999999999865 456778
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.+||+||++.+++. |++||+.+... ..+ ++++++.++..++.+ +...++...+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 899999999999986 99999986421 112 334555555555431 01334556789999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 462 lARall~~~~illlD 476 (569)
T PRK10789 462 IARALLLNAEILILD 476 (569)
T ss_pred HHHHHhcCCCEEEEE
Confidence 999999999999999
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-26 Score=255.89 Aligned_cols=152 Identities=28% Similarity=0.430 Sum_probs=129.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
+..+||++.|++. +++++|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.+.++ +.+.+|+
T Consensus 321 i~~~~l~~~y~~g-----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPDG-----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCCC-----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 4455999999852 379999999999999999999999999999999999999999999999999976 5677899
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC----ccccccCC----CCChhHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG----GVADKQAG----KYSGGMKRRLSVA 777 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~----~~~d~~~~----~LSGG~KrRLsiA 777 (800)
+++|++|++.+++. |++||+.++.. +..++++.+.+++.++.+. +=.|..++ .|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 99999998632 2335667777777777531 11233344 4999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+++++|+|
T Consensus 469 RAll~~~~l~llD 481 (559)
T COG4988 469 RALLSPASLLLLD 481 (559)
T ss_pred HHhcCCCCEEEec
Confidence 9999999999999
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=237.12 Aligned_cols=129 Identities=29% Similarity=0.459 Sum_probs=114.1
Q ss_pred CcEEEEeEEEEcCCCCC-CC--cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH
Q 003716 625 HAIISDNLRKIYPGRDG-NP--EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~-~~--~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~ 701 (800)
..++++||+|.|+.+.+ .. ...||+||||+|++||++||+|+|||||||+-|+|+|+++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46899999999975431 11 248999999999999999999999999999999999999999999999999874311
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.+..+++.++|+.+|+.. +++++.++++||||+||+.|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3455678999999999975 6999999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++++|
T Consensus 126 l~P~liV~D 134 (268)
T COG4608 126 LNPKLIVAD 134 (268)
T ss_pred hCCcEEEec
Confidence 999999999
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-26 Score=288.23 Aligned_cols=156 Identities=21% Similarity=0.322 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--------------------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-------------------- 684 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-------------------- 684 (800)
..|+++||++.|+++. ++++|+|+||+|++||++||+|++||||||++++|.|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~---~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP---NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred ceEEEEEEEEECCCCC---CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 3599999999998532 35799999999999999999999999999999999999998
Q ss_pred ----------------------------------CcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHHHHHH
Q 003716 685 ----------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFY 729 (800)
Q Consensus 685 ----------------------------------tsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~ 729 (800)
++|+|+++|.|+++ +.+.+|++||||||++.||+. |++|||.+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcC
Confidence 69999999999976 567889999999999999974 999999975
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 730 GRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 730 ~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.. .. .+++++++++..++.+ +.........||||||||++|||||+.+|+|||||
T Consensus 1320 ~~--~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1320 KE--DA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CC--CC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21 12 2345666666655532 01223345679999999999999999999999999
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-26 Score=270.78 Aligned_cols=155 Identities=25% Similarity=0.460 Sum_probs=128.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+..
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|+.||||||++.+++. |++||+.+... ..+ ++++.++++..++.+ +...++...+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999986421 122 233444444444321 1234556778999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++||||+.+|++++||
T Consensus 603 ~lARall~~~~ililD 618 (694)
T TIGR01846 603 AIARALVGNPRILIFD 618 (694)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 9999999999999999
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-26 Score=225.00 Aligned_cols=153 Identities=27% Similarity=0.411 Sum_probs=137.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++.+||+-..+ +...+.++||++.+||.+-|.||||||||||+|||+|+.+|++|+|+++|..+...++..++.
T Consensus 3 L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 3 LEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76 (209)
T ss_pred chhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH
Confidence 45566666554 357999999999999999999999999999999999999999999999999998888777888
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+-|.--.+.+=..||+.|||.||.++.+- .....+.++++.+||. ++.|.++++||-|||||+++||-.+..+++
T Consensus 77 l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 77 LLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 88888899999999999999999998764 2245788999999997 599999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 152 WiLD 155 (209)
T COG4133 152 WILD 155 (209)
T ss_pred eeec
Confidence 9999
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-26 Score=227.94 Aligned_cols=164 Identities=26% Similarity=0.328 Sum_probs=134.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r- 704 (800)
++.++|++|.|..... .++.|++++|++|++||.+.++|.|||||||++++|+|.++||+|+|.|+|.|+.+.....|
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 3567888898865322 36789999999999999999999999999999999999999999999999999976443333
Q ss_pred cceEEecCCC--CCCCCCCHHHHHHHHhh---hcCCCc---hhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 705 TSMGVCPQED--LLWETLTGREHLLFYGR---LKNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 705 ~~IGycpQ~~--~L~~~LTv~E~L~~~~~---lkg~~~---~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
..++-++|++ ...+.||+.||+.+... -+|+.. ...++.-.+.++.+++.-+...+.+++-|||||||-||+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4588899997 47999999999998542 233332 334445566677776653468899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
++|.++.|+|+|||
T Consensus 160 ~MAtl~~pkiLLLD 173 (263)
T COG1101 160 LMATLHPPKILLLD 173 (263)
T ss_pred HHHhcCCCcEEEec
Confidence 99999999999999
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=260.67 Aligned_cols=147 Identities=21% Similarity=0.315 Sum_probs=126.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.+ +.+.+|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999974 2469999999999999999999999999999999999999999999999999975 556788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc---c--cCCCCChhHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---K--QAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d---~--~~~~LSGG~KrRLsiA~A 779 (800)
++++|+||++.+++. |++|| + ....++.+++.++.+++.+ ..+ . ...+||||||||++||||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n--------~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE--------G--KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc--------c--CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999886 77776 1 1233556788899998863 222 1 145899999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++.+|++++||
T Consensus 464 l~~~~~ililD 474 (547)
T PRK10522 464 LAEERDILLLD 474 (547)
T ss_pred HhcCCCEEEEE
Confidence 99999999999
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=257.53 Aligned_cols=155 Identities=19% Similarity=0.304 Sum_probs=128.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-H
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-D 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~ 701 (800)
..+++++|+++ .+++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... . .
T Consensus 266 ~~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34789999983 159999999999999999999999999999999999999999999999988542 2 2
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
..++.+||+||+. .+++.+|+.|++.... ... .......++.++++++.++|.. +..++++++|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHH
Confidence 2456799999984 5888999999986431 111 1112334456889999999952 3689999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+|||||
T Consensus 414 la~al~~~p~lLlLD 428 (510)
T PRK15439 414 IAKCLEASPQLLIVD 428 (510)
T ss_pred HHHHHhhCCCEEEEC
Confidence 999999999999999
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=259.91 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=128.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|+++++. ++.+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.. ..++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~-~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGS-EGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCC-cCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 469999999999753211 2469999999999999999999999999999999999999999999999999975 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc------cCCCCChhHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~------~~~~LSGG~KrRLsiA 777 (800)
|+.++|++|++.+|+. |++||+. .+..+++++++++.+++.+ ..++ ...+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8899999999999986 7888731 1234567888999999863 3222 2367999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
||++.+|++++||
T Consensus 483 Rall~~~~ililD 495 (555)
T TIGR01194 483 CAWLEDRPILLFD 495 (555)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999999
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=230.28 Aligned_cols=132 Identities=31% Similarity=0.430 Sum_probs=111.5
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCC--CCCHHHHHHHHh
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 730 (800)
Q Consensus 653 l~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~--~LTv~E~L~~~~ 730 (800)
|++++||++||+|+||||||||+++|+|+++|++|+|.++|+++. +.++.+||+||++.++. .+|++|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578999999999999999999999999999999999999998763 24578999999987643 479999998642
Q ss_pred hh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 731 RL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 731 ~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.. .+......+++++++++.+++. +..++++++||||||||++||+||+.+|++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilD 138 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLD 138 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11 1112223456789999999997 4789999999999999999999999999999999
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=261.76 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=126.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 457999999999963 56999999999999999999999999999999999999999999998 5432
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.|||++|+. .+++.+|+.|++.+........ .....+.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 599999985 6889999999998643211111 12456788999999953 36799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++||||
T Consensus 458 ~p~lLlLD 465 (635)
T PRK11147 458 PSNLLILD 465 (635)
T ss_pred CCCEEEEc
Confidence 99999999
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=284.72 Aligned_cols=154 Identities=19% Similarity=0.310 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+.+ +.+.+
T Consensus 1233 g~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CcEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 359999999999531 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+|+. |+||||..+. .. .++++.++++..++.+ +....+...+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999987 9999998642 12 2345666666666542 0122344568999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 1381 aLARALLr~~~ILILD 1396 (1495)
T PLN03232 1381 SLARALLRRSKILVLD 1396 (1495)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 9999999999999999
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=284.78 Aligned_cols=154 Identities=23% Similarity=0.349 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+|||.|+++ ..+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 369999999999641 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||++||++.||+. |+||||..+. .. .++++.++++..++.+ +....+...+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999987 9999998642 11 2445666666666531 0122334568999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1384 aLARALLr~p~ILILD 1399 (1622)
T PLN03130 1384 SLARALLRRSKILVLD 1399 (1622)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999999999
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=229.21 Aligned_cols=128 Identities=23% Similarity=0.367 Sum_probs=107.1
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-ECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|..+. +| |.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~---~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LG---ANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cc---cccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7775431 22 4566889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.+....++....+.. +.+.+.++|. +..++++++||||||||+++|+||+.+|+++|||
T Consensus 69 nl~~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD 129 (213)
T PRK15177 69 NARMMASLYGLDGDEFS---HFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD 129 (213)
T ss_pred HHHHHHHHcCCCHHHHH---HHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99987776655433322 3344556775 4678999999999999999999999999999999
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-26 Score=248.29 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|+++.|.. .|++++||||++++|+.++|+||+||||||++|+|-.+...++|.|.|||+||+. ....
T Consensus 535 ~G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S 609 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS 609 (790)
T ss_pred CCeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH
Confidence 346999999999964 5789999999999999999999999999999999999999999999999999976 4567
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHH--HH-HcCCCCCccc---cccCCCCChhHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES--LK-SVNLFHGGVA---DKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~--L~-~l~L~~~~~~---d~~~~~LSGG~KrRLsi 776 (800)
.|++||++||+..||++ |+..|+++ ++.. -+.+++.++++.+ =+ .+++.+ ++. .++.-+|||||||||+|
T Consensus 610 LRs~IGVVPQDtvLFNd-TI~yNIry-ak~~-AsneevyaAAkAA~IHdrIl~fPe-gY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLFND-TILYNIRY-AKPS-ASNEEVYAAAKAAQIHDRILQFPE-GYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHhcCcccCcceeecc-eeeeheee-cCCC-CChHHHHHHHHHhhHHHHHhcCch-hhhhhhhhcccccCCcchhhHHH
Confidence 89999999999999998 99999985 4332 1222222222111 11 133432 221 23445799999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||+++.+|.+++||
T Consensus 686 ARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 686 ARTILKAPSIILLD 699 (790)
T ss_pred HHHHhcCCcEEEEc
Confidence 99999999999999
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=233.47 Aligned_cols=127 Identities=25% Similarity=0.303 Sum_probs=109.3
Q ss_pred eeeeeEEEEc-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCC
Q 003716 647 AVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 721 (800)
Q Consensus 647 al~~lsl~I~-----~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LT 721 (800)
.+++++|+++ +||++||+||||||||||+++|+|+++|++|+|.++|. .|+|+||+......+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCCC
Confidence 5667777775 79999999999999999999999999999999999884 5899999988778899
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 722 v~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++|++.+.....+ . ....++++++.++|. +..++++++|||||||||+||+||+.+|+++|||
T Consensus 78 v~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD 140 (246)
T cd03237 78 VRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLD 140 (246)
T ss_pred HHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999976433221 1 123467889999996 4789999999999999999999999999999999
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=229.10 Aligned_cols=160 Identities=25% Similarity=0.363 Sum_probs=136.3
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH-
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 700 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~- 700 (800)
+.+.|+++|++.+|++ |++|++||++|++||-.+|+||||||||||+++++|.++|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999975 689999999999999999999999999999999999999999999999998853 34
Q ss_pred HHhhcceEEecC--CCCCCCCCCHHHHHH--HHhhhc--C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 701 DRIYTSMGVCPQ--EDLLWETLTGREHLL--FYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 701 ~~~r~~IGycpQ--~~~L~~~LTv~E~L~--~~~~lk--g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++|++||+|.- +..+.+..+++|-+. +|+.+- . ...++..+++..+++.+++.+ .+|++.++||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 789999999964 344555678888664 333321 1 234566778999999999974 8999999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+-|||||+.+|+++|||
T Consensus 180 vLiaRALv~~P~LLiLD 196 (257)
T COG1119 180 VLIARALVKDPELLILD 196 (257)
T ss_pred HHHHHHHhcCCCEEEec
Confidence 99999999999999999
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=216.84 Aligned_cols=105 Identities=27% Similarity=0.446 Sum_probs=96.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHhh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~r 704 (800)
++++|++|.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... .+..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 23456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+|| ||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 102 ~illlD 107 (163)
T cd03216 102 RLLILD 107 (163)
T ss_pred CEEEEE
Confidence 999999
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=280.71 Aligned_cols=161 Identities=24% Similarity=0.388 Sum_probs=130.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-CCeecCc-cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-~G~~i~~-~~~~~ 703 (800)
.|+++||++.|+++ +++++++|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR---KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCC---CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 59999999999753 2356999999999999999999999999999999999999999999999 5688854 45667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhh-cCC-----------------------------------------------
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL----------------------------------------------- 735 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-kg~----------------------------------------------- 735 (800)
|++|||+||++.||+. |++||+.+.... ++.
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8899999999999985 999999874210 000
Q ss_pred ---CchhHHHHHHHHHHHcCCCCC---------ccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 736 ---KGPALTQAVEESLKSVNLFHG---------GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 736 ---~~~~~~~~v~~~L~~l~L~~~---------~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.....++++.++++.+++.+. ...++...+||||||||++|||||+.+|+|||||
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD 604 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 001123567778888776420 1135678899999999999999999999999999
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-25 Score=261.25 Aligned_cols=148 Identities=22% Similarity=0.370 Sum_probs=123.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++|+++.|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 46999999999963 24699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCcccccc---------CCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~~~~~d~~---------~~~LSGG~KrRL 774 (800)
+++||+||++.+++. |++||+.+.....+.. ....+++++++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999887 9999998643222111 1122456788999999863 44443 379999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 592 ~iARal~~~p~illLD 607 (659)
T TIGR00954 592 AMARLFYHKPQFAILD 607 (659)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 9999999999999999
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=233.19 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=117.3
Q ss_pred eeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHHhhcceEEecCCCCCCCCCCHHH
Q 003716 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 650 ~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+++|+.+.--+++|-|++||||||++|||+|+++|++|.|.++|.-+... ...-+++|||+||+..||+++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68899988789999999999999999999999999999999999876431 2234678999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||.|. +.+. .....+++.+.+|+.| .+++++.+|||||||||+|+|||+.+|+++|||
T Consensus 96 NL~YG-~~~~-----~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 96 NLRYG-MWKS-----MRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred chhhh-hccc-----chHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99964 2221 3456788999999985 899999999999999999999999999999999
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=240.31 Aligned_cols=125 Identities=27% Similarity=0.447 Sum_probs=111.8
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 003716 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742 (800)
Q Consensus 663 LLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~ 742 (800)
|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++.+||+||+..+++.+|++||+.+..+.++.+..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999985422 23578999999999999999999999876655555556677
Q ss_pred HHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 743 ~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+++++++.++|. ++.++++.+||||||||++|||||+.+|+++|||
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD 125 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLD 125 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 899999999997 4789999999999999999999999999999999
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=279.20 Aligned_cols=154 Identities=20% Similarity=0.340 Sum_probs=130.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. ...+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|+|||.|+.+ ..+++
T Consensus 1307 G~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred CeEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 359999999999642 2459999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----cccc----ccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-----~~~d----~~~~~LSGG~KrRL 774 (800)
|++|||+||++.||+. |++|||..+. . ..++++.++++.+++.+. +-.| ....+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---E----ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---C----CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999999987 9999997532 1 124567888888877520 0123 33457999999999
Q ss_pred HHHHHHcCC-CcEEEEc
Q 003716 775 SVAISLIGN-PKVRLSL 790 (800)
Q Consensus 775 siA~ALig~-P~vlLLD 790 (800)
+|||||+++ |+||+||
T Consensus 1455 aLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMD 1471 (1560)
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 999999995 9999999
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-25 Score=233.03 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=122.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-----------ECCeecCc
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-----------i~G~~i~~ 698 (800)
.+|+|.|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 478999964 235999999 4999999999999999999999999999999999996 78888754
Q ss_pred cHHHhh---cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 699 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 699 ~~~~~r---~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
...+.+ ..++|++|+..+++. ++.+++.... .....++.++++++.+++. +..++.+.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 247999999888874 7888876532 2233456788999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+|+||+.+|++++||
T Consensus 150 laral~~~p~illlD 164 (255)
T cd03236 150 IAAALARDADFYFFD 164 (255)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999999999999999
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=254.43 Aligned_cols=140 Identities=23% Similarity=0.233 Sum_probs=123.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------ 399 (590)
T ss_pred eEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------
Confidence 47999999999963 24999999999999999999999999999999999999999999885
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
..+||+||+..+.+.+||+|++.+..... . ....++++++.++|. +..++++.+|||||||||+||+||+.+|
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 15999999988889999999998743211 1 123578899999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 473 ~llLLD 478 (590)
T PRK13409 473 DLYLLD 478 (590)
T ss_pred CEEEEe
Confidence 999999
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=233.32 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=112.1
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
....|+++|+++. . +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------- 98 (282)
T ss_pred CCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------
Confidence 3457999999985 1 3599999999999999999999999999999999999999999999988
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
.+||+||++.+++. |++||+.+..... . ..+.+.++.+++.+ ....++.+.+||||||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSYD---E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhcccccC---H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 39999999988875 9999998632211 1 11222333333321 012345678999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|++++||
T Consensus 168 v~lAraL~~~p~iLiLD 184 (282)
T cd03291 168 ISLARAVYKDADLYLLD 184 (282)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 99999999999999999
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=254.48 Aligned_cols=160 Identities=29% Similarity=0.415 Sum_probs=141.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p---tsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++..-+++.+ +.+++|+|||..+++||+.||+||+|||||||+++|+|.... .+|+|.+||+.. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4667788887765432 358899999999999999999999999999999999999874 799999999653 3456
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC-----CCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-----~LSGG~KrRL 774 (800)
.++..||+.|+|.+++.|||+|+|.+.+.+|- ++.++.+++|+++++++||. ..+|+.++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 78889999999999999999999999998863 35588899999999999997 48888887 4999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||.-|+.||+|++||
T Consensus 180 sia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 180 SIALELLTDPSILFLD 195 (613)
T ss_pred HHHHHHHcCCCEEEec
Confidence 9999999999999999
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=279.39 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=130.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++.+|++. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+++ ..+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---ccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~------~---~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.||+. |+||||..+. .. .++++.++++..++.+ + ........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999997 9999997543 12 2445666777766642 0 122234457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1431 ~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1431 CLARALLRKTKILVLD 1446 (1522)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999999999
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=208.33 Aligned_cols=155 Identities=26% Similarity=0.425 Sum_probs=136.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~ 702 (800)
++.++|++.+-++ .-.|-++|++|.+|||+.|+||+|||||||+.-+.|.+.++ +|+++++++++..-. .
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-a 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-A 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-h
Confidence 4678899977764 46899999999999999999999999999999999999875 799999999986533 3
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++++|+.+|++.||++++|.+||.|. .-..+++...+..++..|++.+|. +..++.+.+||||||-|+++-|+|+.
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fA-lp~~~KG~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFA-LPATLKGNARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhhheeeeecccccccccccccceEEe-cCcccccHHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHHHh
Confidence 467899999999999999999999873 222344556778899999999997 58899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
.||.++||
T Consensus 152 ~Pk~lLLD 159 (213)
T COG4136 152 QPKALLLD 159 (213)
T ss_pred CcceeeeC
Confidence 99999999
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=254.29 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=117.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4789999999974 569999999999999999999999999999999999999999999998742
Q ss_pred ceEEecCCCCCCCCCCHHHHHH-----------------------HHhhhc----CCCchhHHHHHHHHHHHcCCCCCcc
Q 003716 706 SMGVCPQEDLLWETLTGREHLL-----------------------FYGRLK----NLKGPALTQAVEESLKSVNLFHGGV 758 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~-----------------------~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~ 758 (800)
.+||++|+.... ..|+.+.+. .+..+. .....+.+.+++++++.+|+.+ +.
T Consensus 65 ~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 377777754332 234444321 111111 1122344567899999999962 36
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 759 ~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++++++|||||||||+||+||+.+|+|||||
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD 174 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 79999999999999999999999999999999
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=274.44 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=123.0
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCcceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~----~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998854333456679999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCcccccc-----CCCCChhHHHHHHHHHHHcCCCcE
Q 003716 720 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 720 LTv~E~L~~~~~lkg-------~~~~~~~~~-v~~~L~~l~L~~~~~~d~~-----~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+|+|.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999776552 233333333 567899999974 55554 567999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 231 lllD 234 (1394)
T TIGR00956 231 QCWD 234 (1394)
T ss_pred EEEe
Confidence 9999
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=235.98 Aligned_cols=160 Identities=28% Similarity=0.486 Sum_probs=125.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...+.++++...=++. ++++|+++||++.+||.+||+||+|||||||.|+|.|..+|++|.|.+||-+++. +.++
T Consensus 332 ~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 332 QGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 4568999999876542 4789999999999999999999999999999999999999999999999999975 7788
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.-++|||.||+-.||+. |+.||+.=|.. ..+.+.+-+ .+.+++-.+--..+.....--..||||||||+.+|
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLA 484 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484 (580)
T ss_pred hccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHH
Confidence 88999999999999998 99999964431 111111111 13333333222100112223347999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||.|+|.+++||
T Consensus 485 RAlYG~P~lvVLD 497 (580)
T COG4618 485 RALYGDPFLVVLD 497 (580)
T ss_pred HHHcCCCcEEEec
Confidence 9999999999999
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=253.39 Aligned_cols=144 Identities=24% Similarity=0.365 Sum_probs=122.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999963 56999999999999999999999999999999999999999999999641
Q ss_pred hcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..+||++|+. .+.+..|+.+++.-. ......+.++++|+.+++.. +..++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2599999974 455667888776421 11233567889999999962 3679999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|+|||
T Consensus 447 ~~p~lLlLD 455 (638)
T PRK10636 447 QRPNLLLLD 455 (638)
T ss_pred cCCCEEEEc
Confidence 999999999
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=229.91 Aligned_cols=165 Identities=27% Similarity=0.382 Sum_probs=146.5
Q ss_pred CCcEEEEeEEEEcCCCCCC-----CcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGN-----PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~-----~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
...++.++++..|+-+.|- ....||+++||++++||.+||+|.+|||||||=.+|.++++++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3568899999999865431 2357999999999999999999999999999999999999887 999999999963
Q ss_pred ----cHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 699 ----DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 699 ----~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
++..+|++|-+|||++ .|-|.|||.|-+.-....++ .+..+.++++.++|+++||+. .-++++++++||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcch
Confidence 5566789999999997 58999999999887666653 567888999999999999986 68899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||++||||++.+|++++||
T Consensus 432 RQRIAIARAliLkP~~i~LD 451 (534)
T COG4172 432 RQRIAIARALILKPELILLD 451 (534)
T ss_pred hhHHHHHHHHhcCCcEEEec
Confidence 99999999999999999999
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-25 Score=244.17 Aligned_cols=154 Identities=25% Similarity=0.395 Sum_probs=133.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r 704 (800)
.++++||+++|++. +.+|++|+||++++||.++|+|++||||||+++.|+|..+|++|+|.++|.++..- ..++|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 78999999999863 35799999999999999999999999999999999999999999999999999763 34578
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---C------ccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---G------GVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---~------~~~d~~~~~LSGG~KrRLs 775 (800)
+.|++++|...+|.. |+|+||.+.. ....++++.++++++||++ + ...+.-...|||||||||+
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 899999999999997 9999998742 2244677888899988864 0 1334455689999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||+|+.|.++++||
T Consensus 485 lAR~LL~dapl~lLD 499 (573)
T COG4987 485 LARALLHDAPLWLLD 499 (573)
T ss_pred HHHHHHcCCCeEEec
Confidence 999999999999999
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=245.08 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=137.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCcceEEECCeecCccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--ptsG~I~i~G~~i~~~~~~ 702 (800)
+....+|+.+.-+.+. ..+..|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+|+|....+ +.
T Consensus 786 ~V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ET 861 (1391)
T ss_pred ceEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hh
Confidence 3455667766654332 35789999999999999999999999999999999999754 358999999998753 45
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCCC----CChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~----LSGG~KrRLs 775 (800)
.+|.+|||-|+|.-.+.+||||-|.|.|.+|. ++.++..+.|+++++.++|. +++|.-++. ||.+||+||+
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceee
Confidence 67889999999999999999999999998873 44455567899999999997 488888887 9999999999
Q ss_pred HHHHHcCCC-cEEEEc
Q 003716 776 VAISLIGNP-KVRLSL 790 (800)
Q Consensus 776 iA~ALig~P-~vlLLD 790 (800)
||.-|+.+| .||+||
T Consensus 940 IgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLD 955 (1391)
T ss_pred EEEEEecCCceeEEec
Confidence 999999999 999999
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=271.12 Aligned_cols=153 Identities=22% Similarity=0.332 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|+|||.|+.+ ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999997 89999999999976 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----ccccc----cCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-----~~~d~----~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+|+. |+||||..+.. ..++++.++++.++|.+. +-.|. ....||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~~-------~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYEQ-------WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCcccC-------CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 99999975421 125577788888877420 01222 2347999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1363 ~LARALLr~~~ILlLD 1378 (1490)
T TIGR01271 1363 CLARSILSKAKILLLD 1378 (1490)
T ss_pred HHHHHHhCCCCEEEEe
Confidence 9999999999999999
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=248.14 Aligned_cols=144 Identities=25% Similarity=0.350 Sum_probs=120.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999963 24699999999999999999999999999999999999999999999865 2
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHH-hh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFY-GR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~-~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||++|+. .+.+++.++..++ .. ..+. .++.++++|+.+++.+ +..++++.+|||||||||+||+||+.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 4699999985 3455666664432 22 1121 2456889999999963 36789999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 645 ~p~lLLLD 652 (718)
T PLN03073 645 KPHILLLD 652 (718)
T ss_pred CCCEEEEc
Confidence 99999999
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=206.68 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=140.8
Q ss_pred CcEEEEeEEEEcCCC-CCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec----Cc-
Q 003716 625 HAIISDNLRKIYPGR-DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~-~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i----~~- 698 (800)
..+.++|++|+|--. .+.-.-++++++||+|+.|||++|-||+|+||||++|+|-|-+.|++|+|++.-..- ..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 368899999998421 112346799999999999999999999999999999999999999999999975432 11
Q ss_pred c---HHHh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 699 D---MDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 ~---~~~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+ .-++ |+-|||+.|+-...|.....|-+.--..-+|++.+....++.++|.++++.+ ...+-.+.++|||+|||+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRV 161 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheeh
Confidence 1 1223 4569999999988898888888777667789999999999999999999985 688999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
.|||.++.|-+|+|||
T Consensus 162 NIaRgfivd~pILLLD 177 (235)
T COG4778 162 NIARGFIVDYPILLLD 177 (235)
T ss_pred hhhhhhhccCceEEec
Confidence 9999999999999999
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-24 Score=248.41 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=118.7
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-----------ECCeecCc
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-----------i~G~~i~~ 698 (800)
++++++|++ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 77 ~~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 77 EEPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred cCceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence 348999964 346999999 9999999999999999999999999999999999997 89998854
Q ss_pred cHHHh---hcceEEecCCCCCCCCC---CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 699 DMDRI---YTSMGVCPQEDLLWETL---TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ~~~~~---r~~IGycpQ~~~L~~~L---Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
...+. +..+++.+|.....+.+ |++|++... +..+.++++++.++|. ...|+++++|||||||
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHH
Confidence 32222 23467777754443332 999988631 2345789999999996 4789999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+||+||+.+|+++|||
T Consensus 220 rv~ia~al~~~p~lllLD 237 (590)
T PRK13409 220 RVAIAAALLRDADFYFFD 237 (590)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 999999999999999999
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=244.09 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=113.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6899999999964 469999999999999999999999999999999999999999999998731
Q ss_pred ceEEecCCCCCCCCCCHHHH------------------------------HHHHhhh----cCCCchhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRL----KNLKGPALTQAVEESLKSV 751 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~------------------------------L~~~~~l----kg~~~~~~~~~v~~~L~~l 751 (800)
.+++++|++......++.++ +..+..+ ......+.+.+++++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 25666665432222333332 2222211 1111223456789999999
Q ss_pred CCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 752 ~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+. .++++++|||||||||+||+||+.+|+|+|||
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLD 181 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLD 181 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 995 38899999999999999999999999999999
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=266.70 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=122.7
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
++.+|+|+|+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.... .++.+||++|+|.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 467999999999999999999999999999999999999998 999999999885321 267899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCC---ccccccC
Q 003716 721 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHG---GVADKQA 763 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~~----------~~~~------------------------~~~v~~~L~~l~L~~~---~~~d~~~ 763 (800)
||+|+|.|.++.++.. .++. +..++++++.+||.+. ...|+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999987766421 1110 1135779999999741 1236678
Q ss_pred CCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 764 GKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 764 ~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.|||||||||+||++|+++|++++||
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllD 361 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMD 361 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEe
Confidence 899999999999999999999999999
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-23 Score=201.05 Aligned_cols=95 Identities=35% Similarity=0.552 Sum_probs=89.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|. +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999964 36999999999999999999999999999999999999999999999984 46
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+|| ||+|||||+++||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999999 999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 92 lllD 95 (144)
T cd03221 92 LLLD 95 (144)
T ss_pred EEEe
Confidence 9999
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-23 Score=207.92 Aligned_cols=160 Identities=22% Similarity=0.324 Sum_probs=139.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCc--cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~--~~ 700 (800)
.+++++||+..-.+ ++.+|+++||+|++||+.+|+||||||||||.++|+|.. ++|+|+|.++|+||.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 46899999999864 157999999999999999999999999999999999985 7899999999999975 34
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCC--chhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLK--GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 776 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~--~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrRLsi 776 (800)
+++|..|..-+|.|.=++..|+.+.|......+ +-. ..+..+.+++.++.+++.+ +++++.+. .+|||+|+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 567888999999999999999999998755432 211 2466788999999999985 68888887 599999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
+.+++.+|++.+||
T Consensus 156 lQ~~~lePkl~ILD 169 (251)
T COG0396 156 LQLLLLEPKLAILD 169 (251)
T ss_pred HHHHhcCCCEEEec
Confidence 99999999999999
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-23 Score=235.46 Aligned_cols=147 Identities=29% Similarity=0.378 Sum_probs=124.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|.++++++.|++ +.+++++|+++.+|+++||+|+||||||||||+|+|.+.|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 46899999999964 68999999999999999999999999999999999999999999987642
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHh-hhc-----------------------------CCCchhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYG-RLK-----------------------------NLKGPALTQAVEESLKSVNLF 754 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~-~lk-----------------------------g~~~~~~~~~v~~~L~~l~L~ 754 (800)
-++||++|+..+.+..||.+.+.... .+. .+...+.+.+++.+|..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 25999999999999999998765421 000 011123456788899999997
Q ss_pred CCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 755 ~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+ . ++++++||||||+||++|+||+.+|++||||
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLD 178 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLD 178 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 3 9999999999999999999999999999999
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=216.65 Aligned_cols=165 Identities=22% Similarity=0.320 Sum_probs=141.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
.+.+.++||+..|+..+ ....||++|||+|++||.++|+|++|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 4 ~~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 35789999999997543 357899999999999999999999999999999999999875 37999999999853
Q ss_pred ----cHHHhh-cceEEecCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCC-CccccccCCCCChh
Q 003716 699 ----DMDRIY-TSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGG 769 (800)
Q Consensus 699 ----~~~~~r-~~IGycpQ~~~--L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LSGG 769 (800)
.+..+| .+|+++||++. |.|-.|+...+.-..+ -+|+.+++.++++.++|+.+|+.+ +...+.++++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 233444 46999999974 7888888887765444 468888999999999999999975 34668999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
||||+.||+||+.+|++++-|
T Consensus 162 qRQRVMIAMALan~P~lLIAD 182 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIAD 182 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeec
Confidence 999999999999999999999
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=202.69 Aligned_cols=93 Identities=28% Similarity=0.338 Sum_probs=85.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy 709 (800)
.||+|.|++ +.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999964 5688885 9999999999999999999999999999999999999999853 789
Q ss_pred ecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 710 cpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
+||+.. ||||||||+++||||+.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988542 999999999999999999999999
Q ss_pred c
Q 003716 790 L 790 (800)
Q Consensus 790 D 790 (800)
|
T Consensus 96 D 96 (177)
T cd03222 96 D 96 (177)
T ss_pred E
Confidence 9
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=195.10 Aligned_cols=103 Identities=35% Similarity=0.649 Sum_probs=95.1
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcce
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 707 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~I 707 (800)
++++++.|++ +.++++++|++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 5789999964 469999999999999999999999999999999999999999999999998864 244566789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEE
Q 003716 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787 (800)
Q Consensus 708 GycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vl 787 (800)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
+||
T Consensus 103 ilD 105 (157)
T cd00267 103 LLD 105 (157)
T ss_pred EEe
Confidence 999
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-22 Score=253.92 Aligned_cols=144 Identities=24% Similarity=0.352 Sum_probs=117.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|+++.|++++ ++++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. .++
T Consensus 613 ~~I~~~~vsF~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~ 678 (1495)
T PLN03232 613 PAISIKNGYFSWDSKT---SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIR 678 (1495)
T ss_pred CcEEEEeeEEEcCCCC---CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------Eec
Confidence 3699999999997421 35699999999999999999999999999999999999999998763 246
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++|+||||++.+++. |++||+.|... .. +++.+++++..+|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lf~g-TIreNI~fg~~---~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 679 GSVAYVPQVSWIFNA-TVRENILFGSD---FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred CcEEEEcCccccccc-cHHHHhhcCCc---cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 789999999999986 99999998532 12 345555666555532 01223445679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||||+..+|+|+|||
T Consensus 751 LARAly~~~~IlLLD 765 (1495)
T PLN03232 751 MARAVYSNSDIYIFD 765 (1495)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-22 Score=252.71 Aligned_cols=146 Identities=23% Similarity=0.374 Sum_probs=116.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 699 (1522)
T TIGR00957 635 NSITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------- 699 (1522)
T ss_pred CcEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------
Confidence 369999999999742 24699999999999999999999999999999999999999999999987
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CccccccCCCCChhHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~--~~L~~l~L~~---~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+||||||++.+++ .|++||+.+.... ..+..++.++ ++.+.++..+ +...+++..+||||||||++||||
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 4999999999875 6999999974321 2222222111 1122233221 123467788999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++.+|++++||
T Consensus 775 l~~~~~illLD 785 (1522)
T TIGR00957 775 VYSNADIYLFD 785 (1522)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=253.54 Aligned_cols=143 Identities=24% Similarity=0.368 Sum_probs=118.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-ceEEECCeecCccHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-G~I~i~G~~i~~~~~~~ 703 (800)
..|+++|+++.|+.++ ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------ 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA---ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677 (1622)
T ss_pred CceEEEeeEEEccCCC---CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------
Confidence 3699999999997421 3569999999999999999999999999999999999999999 89974
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
+++|+||||++.+++. |++||+.|.... .+++.+++++..+|.+ ......+..+||||||||+
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI 749 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV 749 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH
Confidence 4579999999999986 999999985321 2445566666655532 0122345567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||+..+|+|+|||
T Consensus 750 aLARAly~~~~IlLLD 765 (1622)
T PLN03130 750 SMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHHHHhCCCCEEEEC
Confidence 9999999999999999
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=250.00 Aligned_cols=130 Identities=20% Similarity=0.323 Sum_probs=104.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999988 39999999999985 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~-----v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.|.... .....++. .++.++.+...+....+++..+||||||||++||||++.+|+++|||
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD 573 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 573 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99975322 11111111 22233333222111345678899999999999999999999999999
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-22 Score=236.18 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=117.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCcceEEECCeecCc--
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIRT-- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~---~ptsG~I~i~G~~i~~-- 698 (800)
...|.++|++|.|++ +.+|+|+||+|.+||++||+|+||||||||+|+|+|.. .|++|+|.+.++++..
T Consensus 175 ~~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 346999999999964 45999999999999999999999999999999999964 6889999865554211
Q ss_pred --c--------H---HHhhcceEEecCCCCCCCC-C---------------CHHHHHH-HHhhhcCCCchhHHHHHHHHH
Q 003716 699 --D--------M---DRIYTSMGVCPQEDLLWET-L---------------TGREHLL-FYGRLKNLKGPALTQAVEESL 748 (800)
Q Consensus 699 --~--------~---~~~r~~IGycpQ~~~L~~~-L---------------Tv~E~L~-~~~~lkg~~~~~~~~~v~~~L 748 (800)
. . ...++.+|+++|.+.+... . ...+.+. .+.++........+++++++|
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 0 1123457888876433211 0 0111111 111221122335567788899
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.+|+.+ +..++++++|||||||||+||+||+.+|+++|||
T Consensus 329 ~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLD 369 (718)
T PLN03073 329 AGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLD 369 (718)
T ss_pred HHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999963 3678999999999999999999999999999999
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=191.07 Aligned_cols=156 Identities=24% Similarity=0.363 Sum_probs=123.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~ 698 (800)
.+.+.+++|+|.|+++ ...+++||++++||+.||+|++|+|||||+++|+|-+.|+.|+|...-.+ +-.
T Consensus 4 ~PLL~V~~lsk~Yg~~------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGPG------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCCC------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 3578999999999863 46899999999999999999999999999999999999999999886432 211
Q ss_pred --cHH---HhhcceEEecCCCC--CCCCC----CHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCC
Q 003716 699 --DMD---RIYTSMGVCPQEDL--LWETL----TGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766 (800)
Q Consensus 699 --~~~---~~r~~IGycpQ~~~--L~~~L----Tv~E~L~~~-~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~L 766 (800)
+.+ -.|..-|++.|++. |-... .+-|-+.-. .+-+ -.+++.+.++|+++++.. ...|..+.++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~-~RiDD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDL-DRIDDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCc-ccccCccccc
Confidence 111 13456899999964 33322 233443322 2222 356778899999999985 5789999999
Q ss_pred ChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 767 SGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 767 SGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||+|||.|||-|+..|+++|+|
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMD 176 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMD 176 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEec
Confidence 999999999999999999999999
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=191.68 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=89.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
.+.|++|+||++++||+++|+||||||||||+|++. +++|++.++|..-. ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----cccccEEEEhH-----------
Confidence 467999999999999999999999999999999995 37999999876321 11345888877
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC--CcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~--P~vlLLD 790 (800)
.+.++.++|.+ ...++++.+||||||||+++|+||+.+ |+++|||
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlD 114 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILD 114 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 24678888863 247899999999999999999999999 9999999
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-21 Score=209.63 Aligned_cols=154 Identities=25% Similarity=0.454 Sum_probs=123.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..+..+++++.|.. .+++++++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|++. ..+.+
T Consensus 261 g~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 261 GAVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred ceEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 45889999999974 5789999999999999999999999999999999999999999999999999976 34567
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CccccccCC----CCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQAG----KYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~-----~~~~d~~~~----~LSGG~KrRL 774 (800)
|+.||.+||+..||.+ |...|+.+. +.. .. ++++...++...+.+ .+-.|..++ .|||||||||
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~yg-r~~-at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYG-RPD-AT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhcc-Ccc-cc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 8999999999999987 888888753 221 11 223333333332221 012233443 6999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||+++.+|+|++||
T Consensus 409 aiar~ilk~p~il~~d 424 (497)
T COG5265 409 AIARTILKNPPILILD 424 (497)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=216.24 Aligned_cols=146 Identities=28% Similarity=0.314 Sum_probs=126.5
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-------- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-------- 384 (530)
T ss_pred CCeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------
Confidence 3567899999999975 267999999999999999999999999999999999999999999987531
Q ss_pred hhcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
-++||.+|+. .+.++.|+.|++.-... ...+..+..+|..+++.. +...++++.||||||.||.+|+.++
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhc
Confidence 3599999986 45577899998875431 111678999999999985 5779999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|.+||||
T Consensus 456 ~~pNvLiLD 464 (530)
T COG0488 456 QPPNLLLLD 464 (530)
T ss_pred cCCCEEEEc
Confidence 999999999
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=242.24 Aligned_cols=129 Identities=26% Similarity=0.423 Sum_probs=105.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHH
Confidence 3569999999999999999999999999999999999999999999863 46999999999875 6999
Q ss_pred HHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||+.++... ..+..++ .+++.++.+ |+. ...+++..+||||||||++|||||+.+|+|+|||
T Consensus 739 enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 739 GNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999985321 1111111 233445555 553 3567889999999999999999999999999999
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=232.91 Aligned_cols=154 Identities=23% Similarity=0.397 Sum_probs=130.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++.+|... -..+|+||||+|++||.+||+|..|||||||+++|-.+..|++|+|.|||.||.+ ...+.
T Consensus 1137 G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 469999999999752 3479999999999999999999999999999999999999999999999999976 67889
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----Ccccc----ccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVAD----KQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~-----~~~~d----~~~~~LSGG~KrRL 774 (800)
|++++++||+|.||.. |+|+||.=+... .++++-++||..+|.+ ...+| +-..++|-||||-+
T Consensus 1213 RsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred HhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 9999999999999998 999999754332 2445556666665542 01122 23457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++||||+.++||++||
T Consensus 1285 CLARALLr~skILvLD 1300 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLD 1300 (1381)
T ss_pred HHHHHHhccCCEEEEe
Confidence 9999999999999999
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=221.51 Aligned_cols=145 Identities=22% Similarity=0.338 Sum_probs=121.0
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++|.+...... .....|+||||+|++||.+|++|+-|||||+|+.+|.|.++..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 2345999999999999999999999999999999999999999999999884
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
++||||.+.++.. |+|||+.|...+ .+++-++.++...|.+ .....++.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999985433 2445555566555542 112345667899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|||+-.|++|+|||
T Consensus 652 IsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLD 668 (1381)
T ss_pred HHHHHHHhccCCEEEEc
Confidence 99999999999999999
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=189.09 Aligned_cols=150 Identities=23% Similarity=0.369 Sum_probs=123.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
-..|+++|+++.|.. +.--|..||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. ..++
T Consensus 320 ~~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 320 WKTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred ccceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence 346999999999975 2246899999999999999999999999999999999999999999999999975 5678
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-cccccc--CCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQ--AGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~--~~~LSGG~KrRLsiA~A 779 (800)
.|+-++-++-+-.||+.+ .|.+.....+.++..|+++.|.+. ...|.. .-+||.|||+||++-.|
T Consensus 395 YR~LfSavFsDyhLF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A 462 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA 462 (546)
T ss_pred HHHHHHHHhhhHhhhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH
Confidence 888888777777666653 233333456788888888888641 233333 34799999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++-+.+|+++|
T Consensus 463 llEeR~Ilv~D 473 (546)
T COG4615 463 LLEERDILVLD 473 (546)
T ss_pred HHhhCCeEEee
Confidence 99999999999
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-19 Score=183.46 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=97.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCcc--------eEEECCeec----
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--------TAYVQGLDI---- 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt----------------Gl~~ptsG--------~I~i~G~~i---- 696 (800)
+.++++++ |++++|+||||||||||+++|. +++.+++| ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 46788876 8999999999999999999998 55666666 666655321
Q ss_pred CccHHHhhcceEEecCCCCCCC-CCCHHHHHHHHhhhcCCCchhHHH--HHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 697 RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 697 ~~~~~~~r~~IGycpQ~~~L~~-~LTv~E~L~~~~~lkg~~~~~~~~--~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..+...+++.+|++||+..+++ ..|..|...+.... |+....... ...+..+.+++. +..++++.+||||||||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~--~~~~~~~~~lS~G~~~r 166 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK--QDEQQEMQQLSGGQKSL 166 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc--ccccccccccCHHHHHH
Confidence 1122345678999999988887 46777766665543 544321000 011233334454 35788999999999999
Q ss_pred HHHHHHHc----CCCcEEEEc
Q 003716 774 LSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALi----g~P~vlLLD 790 (800)
+++|+||+ .+|++++||
T Consensus 167 ~~la~~l~~~~~~~~~illlD 187 (243)
T cd03272 167 VALALIFAIQKCDPAPFYLFD 187 (243)
T ss_pred HHHHHHHHHhccCCCCEEEEE
Confidence 99999996 368999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-18 Score=177.60 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=92.7
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---------ceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---------G~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
+++++++++| +++|+||||||||||+++|.|+.++.. |++.+.|+++... ..++++|++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCCc--
Confidence 6789999999 999999999999999999999987653 4677778776432 2357899999998766
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc----CCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi----g~P~vlLLD 790 (800)
+. .. ..++++++++. . +..++++.+||||||||+++|++++ .+|++++||
T Consensus 89 ---------~~----~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 ---------YS----II---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred ---------ee----EE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 11 10 13466677776 2 3678999999999999999999987 567999999
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-18 Score=175.14 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=89.1
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCcceEEEC-C------ee---cC-ccHHHhh-cceEEe
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQ-G------LD---IR-TDMDRIY-TSMGVC 710 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLl-k~LtGl~~ptsG~I~i~-G------~~---i~-~~~~~~r-~~IGyc 710 (800)
...+|+++||+|++||++||+|+||||||||+ ..+.+ +|++.+. + .. +. .+..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 55432 3432211 0 00 10 0111111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC-
Q 003716 711 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 784 (800)
Q Consensus 711 pQ~~~--L~~~LTv~---E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P- 784 (800)
.|++. +.+..++. |...++..+. ......++ .+.++.++|.+ ...++++.+||||||||+++|+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55543 23344543 3333332221 12222333 56899999963 3579999999999999999999999998
Q ss_pred -cEEEEc
Q 003716 785 -KVRLSL 790 (800)
Q Consensus 785 -~vlLLD 790 (800)
++++||
T Consensus 158 ~~llllD 164 (226)
T cd03270 158 GVLYVLD 164 (226)
T ss_pred CCEEEEe
Confidence 599999
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-19 Score=186.83 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=105.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r- 704 (800)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|. ++.|.+.. ..+
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 46777776 7753 568999987 899999999999999999997 34554432 223
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHH--HHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--------g~~~~~~~~--~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+++|+++|+..+++.+|++|++.+++... |+..++... ..+++++.++|. +..++++..||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 57999999999999999999988877543 332221111 125666778886 467889999999999999
Q ss_pred HHHHHHcC----CCcEEEEc
Q 003716 775 SVAISLIG----NPKVRLSL 790 (800)
Q Consensus 775 siA~ALig----~P~vlLLD 790 (800)
++|+|++. +|++++||
T Consensus 137 ~la~al~~~~~~~p~ililD 156 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred HHHHHHHhcccCCCCEEEEc
Confidence 99999963 58999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=186.19 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=132.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
..+++++++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+.
T Consensus 262 ~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 262 PVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred cEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 45677777542 1589999999999999999999999999999999999999999999999875 34566
Q ss_pred hhcceEEecCC---CCCCCCCCHHHHHHHHh--hhc---CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 703 IYTSMGVCPQE---DLLWETLTGREHLLFYG--RLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~---~~L~~~LTv~E~L~~~~--~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++..|+|||.+ +.++..++++||+.+.. +.. -+.....++.++++.+.+++.. .-.+.++.+||||+|||+
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhhH
Confidence 78899999987 67999999999998752 111 1455666778899999999974 467899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
.||+.|..+|+|||||
T Consensus 411 vlarwL~~~p~vLilD 426 (500)
T COG1129 411 VLARWLATDPKVLILD 426 (500)
T ss_pred HHHHHHhcCCCEEEEC
Confidence 9999999999999999
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-17 Score=175.30 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=100.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC-cceEEECCe-ecCcc--H-HHhhcceEEecCCC---------CCCCCCCHH
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 723 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~pt-sG~I~i~G~-~i~~~--~-~~~r~~IGycpQ~~---------~L~~~LTv~ 723 (800)
..+++|+|||||||||++++|.|++.++ .|++...|. ++... . ...+.++++.+|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999999887 468888776 43211 1 11235799999985 356688888
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------ccccccCCCCChhHHHHHHHHHHHc--
Q 003716 724 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 781 (800)
Q Consensus 724 E~L~~~~~lkg-~-~~~~~~~~v~~~L~~l~L~~~------------------~~~d~~~~~LSGG~KrRLsiA~ALi-- 781 (800)
+++......+. + .+....+++.++|+.+++..+ +..++++.+||||||||+++|+||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88764322111 1 123345789999999998521 2457889999999999999999997
Q ss_pred --CCCcEEEEc
Q 003716 782 --GNPKVRLSL 790 (800)
Q Consensus 782 --g~P~vlLLD 790 (800)
.+|++++||
T Consensus 185 ~~~~~~illlD 195 (251)
T cd03273 185 LFKPAPMYILD 195 (251)
T ss_pred hccCCCEEEEe
Confidence 688999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=180.95 Aligned_cols=145 Identities=26% Similarity=0.306 Sum_probs=119.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.|.++||+..-++ .+..|++++|+|++||-+-|.|+||||||||+|+|+|+-|--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 478999999999875 24799999999999999999999999999999999999999999886531
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc------cCCCCChhHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~------~~~~LSGG~KrRLsiA 777 (800)
-..+-|+||.+.+... |.||-+.+-.... +-.++++.+.|.++||.+ ..++ =-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP----DFSDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC----CCChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1347899999998777 9999887543221 123567888999999963 3322 2346999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|.|+++|++++||
T Consensus 528 RilL~kP~~v~LD 540 (604)
T COG4178 528 RLLLHKPKWVFLD 540 (604)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999999
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-17 Score=179.97 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=118.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+.++|+++.|.+ +-.+.++++|.|..++.++++||||||||||+|+++|++.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------- 452 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------
Confidence 467899999999975 237899999999999999999999999999999999999999999864432
Q ss_pred hcceEEecCC--CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ~--~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
-.+++--|| +.+.-+.++.|++.= .. ++....+.+..+|.++||.. +..+.+.++||+|||+||.+|++++
T Consensus 453 -~~~~~y~Qh~~e~ldl~~s~le~~~~--~~---~~~~~~e~~r~ilgrfgLtg-d~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 453 -NKLPRYNQHLAEQLDLDKSSLEFMMP--KF---PDEKELEEMRSILGRFGLTG-DAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred -ccchhhhhhhHhhcCcchhHHHHHHH--hc---cccchHHHHHHHHHHhCCCc-cccccchhhcccccchhHHHHHHHh
Confidence 234555555 344445567666542 11 22334678899999999983 6889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
..|.+|+||
T Consensus 526 kqP~lLlLD 534 (614)
T KOG0927|consen 526 KQPHLLLLD 534 (614)
T ss_pred cCCcEEEec
Confidence 999999999
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=167.83 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=106.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCc-----------ceEEECCeecCcc----
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTS-----------GTAYVQGLDIRTD---- 699 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt--------Gl--~~pts-----------G~I~i~G~~i~~~---- 699 (800)
...|+|++++|+.|+.+++.|++|||||||++.+. +. ..|.. --|.|+..+|...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 11 01211 1467777666321
Q ss_pred -------HHHhhc----------------ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 003716 700 -------MDRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 756 (800)
Q Consensus 700 -------~~~~r~----------------~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~ 756 (800)
.+++|+ .++|..++...+..||+.|++.|+..+++ .+++.++|+.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 122222 25666677777789999999999877642 245678999999962
Q ss_pred ccccccCCCCChhHHHHHHHHHHHcCC---CcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~ALig~---P~vlLLD 790 (800)
...++++.+||||||||+.+|+||+.+ |++++||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD 197 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD 197 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 247999999999999999999999996 7999999
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=169.27 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=135.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec-Cc-cH-
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RT-DM- 700 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i-~~-~~- 700 (800)
...+++++|+..=.. ...+|+++||+|.+|||+||.|..|-|.+.|+.+|+|+.+|.+|+|.++|+++ .. ..
T Consensus 255 ~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 457899999986532 25789999999999999999999999999999999999999999999999997 21 33
Q ss_pred HHhhcceEEecCC---CCCCCCCCHHHHHHHHhhh------cC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 701 DRIYTSMGVCPQE---DLLWETLTGREHLLFYGRL------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 701 ~~~r~~IGycpQ~---~~L~~~LTv~E~L~~~~~l------kg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
+..+..+||+|.+ ..+..++|+.||+.+...- +| +....+.+.++++++++++.. .-.+.++++||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 3345679999997 4688999999999874321 12 456778888999999999963 34677899999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
+||+-+||-|..+|++|+..
T Consensus 409 qQK~IlaREl~~~p~lLI~~ 428 (501)
T COG3845 409 QQKLILARELARRPDLLIAA 428 (501)
T ss_pred eehhhhhhhhccCCCEEEEc
Confidence 99999999999999999986
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-16 Score=168.86 Aligned_cols=139 Identities=25% Similarity=0.303 Sum_probs=108.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.+.-.+++|.|++. .|+-=.=++..||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~F-------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGDF-------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCce-------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 45667788888742 333334567889999999999999999999999999999997 222 3
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+++|=||.-.--.+.||++.|.-..+-. ... .....++++-++|+ ...++++.+||||+.|||+||.||..+++
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhccccC
Confidence 4889999865556679999776432211 111 22345677888886 58999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+.+||
T Consensus 476 lYllD 480 (591)
T COG1245 476 LYLLD 480 (591)
T ss_pred EEEec
Confidence 99999
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=168.96 Aligned_cols=155 Identities=24% Similarity=0.277 Sum_probs=121.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
+.+|++++|+..=+.. ...+++|+||+|++|+-+-|.||||||||+|+|+|.|+-+-++|++.--...-
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------- 499 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------
Confidence 4689999999988752 35789999999999999999999999999999999999999999986543211
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCC----Ccccccc-----CCCCChhHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFH----GGVADKQ-----AGKYSGGMKRR 773 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~----~~~~d~~-----~~~LSGG~KrR 773 (800)
-+.+-|+||.|..-.. |.||.+.+-. ......+...++.+.+.|+.++|.| .+-.|.+ ...||+|||||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 1458899999987665 9999988752 2222233344567788888888764 0112222 24699999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++.||-+..+|++-+||
T Consensus 579 La~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILD 595 (659)
T ss_pred HHHHHHHhcCCceEEee
Confidence 99999999999999999
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-15 Score=167.75 Aligned_cols=160 Identities=20% Similarity=0.338 Sum_probs=112.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE--CCeecCccHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV--QGLDIRTDMD 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i--~G~~i~~~~~ 701 (800)
...+.++++++.|.+ +..++|++|++.+||-+||+|+|||||||+|++|+|-+.|..-++-+ -.+++.....
T Consensus 73 s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 446899999999975 67999999999999999999999999999999999999886554433 3333322111
Q ss_pred Hh-----------hcceEEecCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 702 RI-----------YTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 702 ~~-----------r~~IGycpQ~~~L~-~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.. ++++-|--.+-... ++---.+-...|.++-.+..+..+.++.++|..++... +..++++.++|||
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCch
Confidence 11 11111111000000 11011122223444444455666777888888888774 6889999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
+++|+++||||..+|+++|||
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLD 246 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLD 246 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999999999
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-16 Score=152.90 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=114.2
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
-+-.+|.++..||+.-++||||||||||+-.|+|+++ -+|+|.++|+++.. ...+..++-.|..|+..-...|.|.+.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 3667899999999999999999999999999999975 68999999999864 344556667899888766666788887
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC-------CCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig-------~P~vlLLD 790 (800)
|.++ .+.++....++++...++|. ++..+.+.+|||||-|||-+|...+. ..++++||
T Consensus 93 L~L~-----qP~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 93 LTLH-----QPDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhc-----CchHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 7765 25567788899999999997 48899999999999999999987765 45688888
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-16 Score=158.92 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=92.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEc-CCcEEEEEcCCCCcHHHHHHHHhCC-CCCCcceEEECC-eecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQG-LDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~-~GEi~gLLGpNGAGKTTLlk~LtGl-~~ptsG~I~i~G-~~i~~~~~~ 702 (800)
.|+++|+. .|.+ -++++|... +||+++|+|||||||||++++|++. ..+..+....+. .+.. ...+
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888887 6643 156677654 5999999999999999999999964 344444444320 0110 1122
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.+..|++.+|++... .++.. ..+++.++..+.+ .++..++. ++.++++.+||||||||+++|+||+.
T Consensus 74 ~~~~v~~~f~~~~~~--~~~~r-------~~gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGKK--YRVER-------SRGLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCeE--EEEEE-------ecCCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 345699999986321 11111 1144433322222 24444454 47799999999999999999999974
Q ss_pred ----------CCcEEEEc
Q 003716 783 ----------NPKVRLSL 790 (800)
Q Consensus 783 ----------~P~vlLLD 790 (800)
+|++++||
T Consensus 141 ~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 141 SEVLQNRGGARLEALFID 158 (213)
T ss_pred HHHhhhccCCCCCEEEEe
Confidence 67999999
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-15 Score=183.52 Aligned_cols=145 Identities=26% Similarity=0.336 Sum_probs=121.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CcceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p---tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
...+++|++.-+++||.+-++||.|||||||++.++|-++- ..|+|..+|++.+.... ++.++|++|+|..+++|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999998753 35799999999876444 67899999999999999
Q ss_pred CHHHHHHHHhhhcCC----CchhHHH----HHHHHHHHcCCCCC---ccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 721 TGREHLLFYGRLKNL----KGPALTQ----AVEESLKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~----~~~~~~~----~v~~~L~~l~L~~~---~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
||+|.|.|.++.++. ++-+.++ ..+.+++.+||.+. .+-|.-.+-.|||||+||++|-+++++++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999999998865 1111122 46789999999851 233444557999999999999999999999999
Q ss_pred c
Q 003716 790 L 790 (800)
Q Consensus 790 D 790 (800)
|
T Consensus 285 D 285 (1391)
T KOG0065|consen 285 D 285 (1391)
T ss_pred e
Confidence 9
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-15 Score=155.99 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=84.5
Q ss_pred EEEEcCCcEEEEEcCCCCcHHHHHHHH----hCCCCCCcceEEECCeecCccHHHhhcceEEecCCC-----CCCCCCCH
Q 003716 652 SLALPSGECFGMLGPNGAGKTTFISMM----IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 722 (800)
Q Consensus 652 sl~I~~GEi~gLLGpNGAGKTTLlk~L----tGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~-----~L~~~LTv 722 (800)
++++.+| +++|+||||||||||+++| .|..+|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 3556677 9999999999999999999 49999988877622222222 22356799999998 34455677
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH------HHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR------LsiA~ALig~P~vlLLD 790 (800)
.|++.+. + ++.+++ ..++++++||+||||| +++|+|++.+|++++||
T Consensus 94 ~~~~~~~------~----~~~~~~-----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFC------H----QGESNW-----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeee------c----hHHHHH-----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 7776531 1 112222 2367789999999996 78999999999999999
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-15 Score=164.38 Aligned_cols=144 Identities=24% Similarity=0.359 Sum_probs=101.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..-|.+.+.+..|++ +..|++-++++..|..+||+|+||+|||||||+|+. |.|.+-. +..+ +
T Consensus 78 ~~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~--veqE---~ 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH--VEQE---V 140 (582)
T ss_pred ccceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC--chhh---e
Confidence 345888999999985 679999999999999999999999999999999987 4443322 2111 1
Q ss_pred hcceEEecC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ-~~~L~~~LTv~E~L~~~~~lkg~~~~-~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+. -+++- .+.+-.++.+.+-+ .+-+.+... +.++...++|..+|.++ +...+++++||||.|-||++||||.
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl---~~e~~l~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFL---AEEKELLAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHH---HhhhhhhccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHh
Confidence 00 01111 11222332222222 222112112 33444555999999986 6889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++||||
T Consensus 215 ~~pDlLLLD 223 (582)
T KOG0062|consen 215 AKPDLLLLD 223 (582)
T ss_pred cCCCEEeec
Confidence 999999999
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-14 Score=141.02 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=111.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH-H
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-R 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~-~ 702 (800)
+.+|++.++++.|+.. -+++-|+|++++.|...-|+|.||||||||+|+|+|-.-.-.|.|.+.|.+--.+.. .
T Consensus 11 ~~aievsgl~f~y~~~-----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccC-----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4689999999999863 379999999999999999999999999999999999877777999999987632110 0
Q ss_pred hhcceEEecC----------CCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 703 IYTSMGVCPQ----------EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 703 ~r~~IGycpQ----------~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
-.....|.-- +-.+-.++++.+ +.| |+.+.+ .++-+++++.+++. ..-+.+.+|-||||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mif-----gV~g~d-p~Rre~LI~iLDId----l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIF-----GVGGDD-PERREKLIDILDID----LRWRMHKVSDGQRR 154 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHH-HHh-----hccCCC-hhHhhhhhhheecc----ceEEEeeccccchh
Confidence 0111233211 222334555544 433 222222 25566777777774 45678899999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||.|++.|+..=+|+|||
T Consensus 155 RVQicMGLL~PfkVLLLD 172 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLD 172 (291)
T ss_pred hhHHHHhcccceeEEEee
Confidence 999999999999999999
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-14 Score=159.88 Aligned_cols=144 Identities=25% Similarity=0.372 Sum_probs=108.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
+.|.++|+-..-+. ...++..++|+|++|-.+-|+||||||||+|+|+|.|+-|...|...+- -+
T Consensus 480 ~gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----------~~ 544 (728)
T KOG0064|consen 480 NGIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----------RP 544 (728)
T ss_pred cceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC----------CC
Confidence 46889998888775 3568999999999999999999999999999999999999877766431 13
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHh-----hhcCCCchhHHHHHHHHHHHcCCCCCccccccC---------CCCChhH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYG-----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQA---------GKYSGGM 770 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~-----~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~---------~~LSGG~ 770 (800)
.+|-|+||.|..= .=|.||.+.+-- +-||..++ ..+.+|+.++|+| .+.+-. ..||||+
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGe 617 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGE 617 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHH--HHHhccChhhhccHHhhccchH
Confidence 4599999997643 235566554321 12455543 4455666666642 222222 3699999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||+.+||.+-++|+..+||
T Consensus 618 kQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred HHHHHHHHHHhcCcchhhhh
Confidence 99999999999999999999
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=140.90 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
.++++++++.+| +.+|+|||||||||++..|........+ ....|..+.. ........|++.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 457788888887 8899999999999999998754332211 1111321110 001113568899988776651
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH----cCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL----ig~P~vlLLD 790 (800)
. .....++.++++++. . +..++++++||+|||||++||+|+ +.+|++++||
T Consensus 84 ------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 0 111123567777776 3 467999999999999999999999 6999999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=165.87 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC---cEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P---~vlLLD 790 (800)
.||+.|++.|+..++++ ....+.|+.+||.+ ...++++.+||||||||+.||++|+.+| ++++||
T Consensus 791 ~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 791 DMTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred cCcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 37999999998776432 23467899999963 2479999999999999999999999999 999999
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-13 Score=172.06 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=103.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCcc----e----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSG----T---- 688 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk---------~LtGl~~ptsG----~---- 688 (800)
.+++++++. ..|+++|++|++||++||.|+||||||||++ .|.|...+-.+ .
T Consensus 600 ~L~l~~~~~-----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKATK-----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEecccc-----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 467777641 2699999999999999999999999999999 67776433111 1
Q ss_pred EEECCeecCc-----------cHHHhh---------cceE-----EecCC------------------------------
Q 003716 689 AYVQGLDIRT-----------DMDRIY---------TSMG-----VCPQE------------------------------ 713 (800)
Q Consensus 689 I~i~G~~i~~-----------~~~~~r---------~~IG-----ycpQ~------------------------------ 713 (800)
|.|+-..+.. -.+++| +..| +.++.
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 2333322211 011222 1111 11111
Q ss_pred --------CCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCcc-ccccCCCCChhHHHHHHHHHHHc
Q 003716 714 --------DLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 714 --------~~L~~~LTv~E~L~~~~~l---kg~~~~~~~~~v~~~L~~l~L~~~~~-~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
...|..+||.|+|.+...- .+...++..+++ +.|+.+||. +. .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~--~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD--YLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc--chhhcCccccCCHHHHHHHHHHHHHh
Confidence 1256788999999875431 122344556666 588999996 34 69999999999999999999997
Q ss_pred ---CCCcEEEEc
Q 003716 782 ---GNPKVRLSL 790 (800)
Q Consensus 782 ---g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 826 ~~~~~P~LLILD 837 (1809)
T PRK00635 826 APSKKPTLYVLD 837 (1809)
T ss_pred hcCCCCCEEEEe
Confidence 699999999
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=149.53 Aligned_cols=143 Identities=26% Similarity=0.324 Sum_probs=116.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+-++++++.|++ .++.+++++|.|.-...++|+||||.|||||+++|+|-+.|+.|+..-+ -
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 356789999999986 4689999999999999999999999999999999999999999976432 2
Q ss_pred hcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc-ccCCCCChhHHHHHHHHHHH
Q 003716 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 704 r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d-~~~~~LSGG~KrRLsiA~AL 780 (800)
|-+||+--|+. .|-..-|..|.|. +..+++. +.+++.|-.+||.. +++ -++..||||||-||++|---
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpy----q~ARK~LG~fGL~s--HAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQ---RKFNLPY----QEARKQLGTFGLAS--HAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHH---HhcCCCh----HHHHHHhhhhhhhh--ccceEeeeecCCcchHHHHHHHHh
Confidence 34699999984 3555556666553 4445554 34567788899973 444 57899999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
++.|+|||||
T Consensus 720 l~~PDvlILD 729 (807)
T KOG0066|consen 720 LGGPDVLILD 729 (807)
T ss_pred cCCCCEEEec
Confidence 9999999999
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-13 Score=150.87 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=123.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+++.++++.|... .-..+.+++++++.-+..+++|+||+||||++|++.|...|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------- 425 (582)
T ss_pred CCeeEEEeeeccCCCc----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------
Confidence 4568999999999642 11689999999999999999999999999999999999999999987754
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
|.+|+|-.|+..=+-++.+-+--.+.+..-|. .++++++.+..+||.. +.+.+.+.+||||||-||.+|.....+
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g-~la~~si~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG-ELALQSIASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc-hhhhccccccCCcchhHHHHHHHhcCC
Confidence 57799999997766555555533333333344 4677889999999984 788888999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|.+|+||
T Consensus 501 PhlLVLD 507 (582)
T KOG0062|consen 501 PHLLVLD 507 (582)
T ss_pred CcEEEec
Confidence 9999999
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=142.88 Aligned_cols=129 Identities=29% Similarity=0.389 Sum_probs=99.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--------CCCCcceEEECCeecCccHHHhhcceEEecCC-C
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--------TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-D 714 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--------~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~-~ 714 (800)
...+++|+||+|++||+++++|++||||||+++||.|. ++|++|.|.+--..+ -..+|-. +
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~----------~a~iPge~E 464 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV----------SALIPGEYE 464 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch----------hhccCcccc
Confidence 45799999999999999999999999999999999984 468999887643221 1223332 1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.-+..-|+.||+.- . .+ ....+.++|+..||.+.-....+.++||-|||-|+.||.++...|.+++.|
T Consensus 465 p~f~~~tilehl~s--~----tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 465 PEFGEVTILEHLRS--K----TG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cccCchhHHHHHhh--c----cC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 22335688888742 1 11 123567899999998755667788999999999999999999999999998
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-13 Score=134.58 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=117.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCc-cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~-~~ 700 (800)
.+.++||+..+....| ...||+++|+++.+||+-||+|++|+|||-.-|.|+|..+- |.....+++.|+.. ..
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 4568899988876544 57799999999999999999999999999999999998763 55666777777643 12
Q ss_pred HH----hhcceEEecCCCC--CCCCCCHHHHHHHH---hhhcCCCc---hhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 003716 701 DR----IYTSMGVCPQEDL--LWETLTGREHLLFY---GRLKNLKG---PALTQAVEESLKSVNLFH-GGVADKQAGKYS 767 (800)
Q Consensus 701 ~~----~r~~IGycpQ~~~--L~~~LTv~E~L~~~---~~lkg~~~---~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LS 767 (800)
.+ +-+.|++++|++. |.+.-++-..|.-- -..+|.-. .=.+.++-++|.++|+.+ .+....++.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 2356889999975 44433332222110 00111100 012446678999999973 234557899999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
.|+-|||.||+|++..|++++.|
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred cCcceeeeeehhhccCCceEecc
Confidence 99999999999999999999999
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-12 Score=121.55 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=63.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH-HhhcceEEecCCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~-~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
+.++++++|++++||+++|+||||||||||++++. +|++.++|.|+..... +.++.++++||+ ++. -|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46999999999999999999999999999999986 8999999999865333 345567788777 444 3899
Q ss_pred HHHHH
Q 003716 724 EHLLF 728 (800)
Q Consensus 724 E~L~~ 728 (800)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.5e-13 Score=139.18 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee--cCccH---
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD--IRTDM--- 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~--i~~~~--- 700 (800)
.|+++|. |.|.+ .. ++...++ +.+|+|||||||||++.+|.+.+.++.|++...+.+ +....
T Consensus 3 ~i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 3 RLELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCcccc
Confidence 3667776 66642 11 1222334 999999999999999999999998887877654421 11110
Q ss_pred ---HHhhcceEEecCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 003716 701 ---DRIYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 756 (800)
Q Consensus 701 ---~~~r~~IGycpQ~~~L-~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-------------------- 756 (800)
....-.+.+..|++.. .-..++++....| .+.| .....+.++++++.+++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEEEEEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1112234454444321 0001111111101 1122 12234556788888888421
Q ss_pred ccccccCCCCChhHHHHHHHHHHHcCC----CcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~ALig~----P~vlLLD 790 (800)
...++++.+||||||||+++|+|++.+ |++++||
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllD 184 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLD 184 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 122445689999999999999999864 9999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=151.10 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC---CCcEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig---~P~vlLLD 790 (800)
+||+.|.+.|+..++++ ....++|+.+||.+ ...++++.+||||||||+.||++|+. +|++++||
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILD 856 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILD 856 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 57888988888766432 13457889999963 24699999999999999999999997 59999999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-12 Score=142.51 Aligned_cols=142 Identities=23% Similarity=0.313 Sum_probs=91.4
Q ss_pred eEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-----------CCeecCcc
Q 003716 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-----------QGLDIRTD 699 (800)
Q Consensus 631 nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-----------~G~~i~~~ 699 (800)
++..+|+.. --.|.++- ...+|+++||+|+||-||||.+|+|+|.+.|.=|+--= .|.++..-
T Consensus 79 e~vHRYg~N-----gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y 152 (591)
T COG1245 79 EVVHRYGVN-----GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152 (591)
T ss_pred cceeeccCC-----ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH
Confidence 456777631 12222222 34689999999999999999999999999998775410 11111100
Q ss_pred HHHhhc---ceEEecCCCCC----CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 700 MDRIYT---SMGVCPQEDLL----WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 700 ~~~~r~---~IGycpQ~~~L----~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
..++.. ++..=||.--+ +.. ||.|-|.- .+.+...+++.++++|. ...|+.+++||||+-|
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQ 220 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKVVKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQ 220 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHH
Confidence 011110 12222332111 111 33333321 11123567889999997 5899999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||.|+..++++++.|
T Consensus 221 r~aIaa~l~rdADvY~FD 238 (591)
T COG1245 221 RVAIAAALLRDADVYFFD 238 (591)
T ss_pred HHHHHHHHhccCCEEEEc
Confidence 999999999999999999
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-11 Score=128.83 Aligned_cols=158 Identities=21% Similarity=0.337 Sum_probs=118.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCcceEEECCeecCcc----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD---- 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--l~~ptsG~I~i~G~~i~~~---- 699 (800)
-|.++|.+.+-.+ +..+.+-|+.|--|..+||+||||-|||||++-|+. +--|..=++++..+++..+
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888877654 568999999999999999999999999999999986 3345566777877776321
Q ss_pred HHHh----hcceEEecCCC-----CCCCCCCHHHHHH-HHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 700 MDRI----YTSMGVCPQED-----LLWETLTGREHLL-FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 700 ~~~~----r~~IGycpQ~~-----~L~~~LTv~E~L~-~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.+.+ .++....-..+ .--.+.|+.|.|. .+..++.+.....+.+++++|.-+|... +..+++...+|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 1100 01111111111 1123568888875 3556666655666778999999999985 6889999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
.|-|+|+||||...|.++.||
T Consensus 417 WRMRvSLARALflEPTLLMLD 437 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLD 437 (807)
T ss_pred eeeehhHHHHHhcCceeeeec
Confidence 999999999999999999999
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-11 Score=120.42 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=65.2
Q ss_pred eeeeeEEEEcCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCC
Q 003716 647 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 717 (800)
Q Consensus 647 al~~lsl~I~~GE-i~gLLGpNGAGKTTLlk~Lt--------Gl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~ 717 (800)
.+-++|+++.+|+ +++|.||||+||||++|+|. |...|....+ .++|+.|.-
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~~--- 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENIF--- 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEEE---
Confidence 4567999999995 89999999999999999998 5444421111 133333321
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 718 ~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++.. +..++..+++|+||||++.++++ +.+|+++++|
T Consensus 77 -------------------------------~~lg~~--~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllD 115 (200)
T cd03280 77 -------------------------------ADIGDE--QSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLD 115 (200)
T ss_pred -------------------------------EecCch--hhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEc
Confidence 111221 23456678999999999999988 4899999999
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-10 Score=124.18 Aligned_cols=128 Identities=29% Similarity=0.381 Sum_probs=97.8
Q ss_pred ceeeeeeEEEEcCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 645 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~G-----Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
+.-+-+..|.|+.| |++..+|.||.||||+++|++|.++|++|. ++. .-.++|=||.-.-=..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 44567788888877 588999999999999999999999998762 111 1247777887554445
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
-|||+.+. ..++. .-...+-+.+.++-+.++ ...|+.+.+||||++||+++|.+|-..+++.+.|
T Consensus 417 ~tvR~ll~--~kIr~--ay~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 417 GTVRQLLH--TKIRD--AYMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred chHHHHHH--HHhHh--hhcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence 58888654 23332 112245577778888886 4789999999999999999999999999999999
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-10 Score=120.15 Aligned_cols=97 Identities=22% Similarity=0.177 Sum_probs=75.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE-EecCCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG-ycpQ~~~L~~~LTv~ 723 (800)
+.+.+|++++..+|++++|.||||+||||+++++.- ..+..++| ++|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12344566 6776543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH--cCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL--ig~P~vlLLD 790 (800)
.++++++.+++. |...+.+|+||++++.+++++ +.+|+++|||
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLD 116 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIID 116 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 123455566664 334688999999999999999 9999999999
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-11 Score=128.62 Aligned_cols=166 Identities=22% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHH
Q 003716 367 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIAL 446 (800)
Q Consensus 367 ~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ 446 (800)
+...+++|||+|.++.|+++|++...||++.++++++.+++..++++++ +++...+...++...++++++|+++.+++
T Consensus 178 ~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 178 IAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999888776665544433332 33322233345666778899999999999
Q ss_pred HHHHHHhhCchhHHHHHHHHHHH-HhHHHHHHHHHHhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCC
Q 003716 447 AFLVAALFSNVKTASVIGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDG 525 (800)
Q Consensus 447 ayllS~fFs~~~tA~v~~~i~~~-~~~ll~~~l~~~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g 525 (800)
++++|.+|++.+.|..++.++.+ ..++.+.+.. .+.. +..+..+..++|.+.+..++..+.. |
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~i~~~~P~~~~~~~~~~~~~-----------~ 319 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFP---LSSL--PSFLQWISSFLPFYWFIQGLRNIIY-----------G 319 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh---HHhh--HHHHHHHHHHhhHHHHHHHHHHHHH-----------h
Confidence 99999999999988765544333 2222111111 1111 1222334557899988888765541 1
Q ss_pred CccccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 003716 526 MSWADLSDSENGMKEVLIIMFVEWLLLLGIAYY 558 (800)
Q Consensus 526 ~~w~~l~~~~~gi~~~li~m~i~~ilyllL~~y 558 (800)
- |. .+...++++++.+++++++++|
T Consensus 320 ~-~~-------~~~~~~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 320 D-WS-------EIWISLIILLLFAVVYLLLAIL 344 (344)
T ss_dssp ---------------------------------
T ss_pred c-HH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 11 1234677888888899888775
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-10 Score=116.76 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=74.6
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|+++++++|++++|.||||+||||++++++|+. +..++|. +- ++....+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~-~v-pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGC-FV-PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCC-Cc-chhhcCccChh
Confidence 57999999999999999999999999999999998873 2333442 11 33444555555
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++. ..++.. +..++..+++|+||||+ +.+.+++.+|++++||
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllD 115 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLID 115 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEec
Confidence 552 223332 24567788999999975 6778889999999999
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-10 Score=116.93 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=84.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|++++. |++++|+|||||||||++|+|+|... +...|.++.. -.+.+|++.++..+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------CccCcccceEEEeccchh
Confidence 45788887776 79999999999999999999987543 1234555432 136677888999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHHH--HHHHHcC-CCcEEE
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRLS--VAISLIG-NPKVRL 788 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRLs--iA~ALig-~P~vlL 788 (800)
++.+.... ...+. +++.++++.+++.+. -..|++...++-..++.+. +...+.. ++.+++
T Consensus 79 ~l~~~~s~---~~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiii 143 (199)
T cd03283 79 DLRDGISY---FYAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGII 143 (199)
T ss_pred ccccccCh---HHHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99763211 12233 568888988884211 2568888888877776553 3344433 334443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-09 Score=111.51 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=28.7
Q ss_pred ccccccCCCCChhHHHHHHHHHH----HcCCCcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAIS----LIGNPKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~A----Lig~P~vlLLD 790 (800)
++.+..+++||||||||+.+|.+ ++.+|+++++|
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllD 155 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVD 155 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEe
Confidence 35677899999999999887754 46899999999
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-09 Score=114.34 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.1
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt 679 (800)
-++++.+++.+| ..+|+|||||||||++.+|.
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 456778888776 89999999999999998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=106.15 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=79.6
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----------------c-----------------------c
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------S-----------------------G 687 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt----------------s-----------------------G 687 (800)
.+++.++++.+| +.+|+|||||||||++.+|.-+.... . |
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 456677777776 78899999999999998875443211 0 1
Q ss_pred --eEEECCeecCccHHHhh---cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhH---HHHHHHHHHHcCCC-CCcc
Q 003716 688 --TAYVQGLDIRTDMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL---TQAVEESLKSVNLF-HGGV 758 (800)
Q Consensus 688 --~I~i~G~~i~~~~~~~r---~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~---~~~v~~~L~~l~L~-~~~~ 758 (800)
.+++||..+.. ..++. ..|.+.|++..|.. .+..++..|.-.+-+....+. .++.++++++.+-. .+.+
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22344444322 12222 23566666666652 355677666544322111111 11222222211100 0011
Q ss_pred c---------cccCCCCChhHHHHHHHHHHHc---------CCCcEEEEc
Q 003716 759 A---------DKQAGKYSGGMKRRLSVAISLI---------GNPKVRLSL 790 (800)
Q Consensus 759 ~---------d~~~~~LSGG~KrRLsiA~ALi---------g~P~vlLLD 790 (800)
+ ....+.+|+||||++++|++|+ ++|++++||
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlD 217 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLD 217 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 1 1234568999999999999985 899999999
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-09 Score=121.43 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=87.8
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
++++.+..+++|++++|+||||+||||++..|++.+....|. ++|+++.++. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHHH
Confidence 445556667789999999999999999999999887665553 2478888875 447899999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH-HHHHHHHHcCCC-----cEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr-RLsiA~ALig~P-----~vlLLD 790 (800)
.+|+.+.|++........+..++..++.+ +....+.+...+++- .+.-..+++.++ .++.||
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLd 373 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLN 373 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEe
Confidence 99999988875544445555666667753 456677775444432 234555666655 678888
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-09 Score=123.33 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=53.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc-eEEECCeecCccHHHhhcceEEecCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG-~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
+.||++||+++++||+++|+||||||||||++ .|+..|++| +|.++|.++....+.....+-+++|+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDG 86 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999 788888888 79999999964221111111177775
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=109.87 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
.-++|+||||||||||+++|+|+++|++|++.++|+++.. +..++.+.++++||++ +...++|.|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 5689999999999999999999999999999999999863 3455666788999976 3455555553
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.7e-09 Score=116.45 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=70.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc---eEEECCeecCccH-------HHhhcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG---TAYVQGLDIRTDM-------DRIYTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG---~I~i~G~~i~~~~-------~~~r~~IGycpQ~~ 714 (800)
..|++++ +.+.+||++||+|+||+|||||+++|+|..+++.+ .|-.+|.++..-. ...|..+++.||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 99999999999999999999999999999998864 3333444443211 11245799999999
Q ss_pred CCCCCCCHHHHHHHHhhhc
Q 003716 715 LLWETLTGREHLLFYGRLK 733 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lk 733 (800)
..+..+++.|++...+...
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877553
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=99.67 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=60.0
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE-ecCCCCCCCCCCHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHL 726 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy-cpQ~~~L~~~LTv~E~L 726 (800)
....++.+.++.+..|+||||+||||+++.+....-..+|.+... .++ +.|+ +|+...-+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~--------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL--------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE---------
Confidence 344555666667999999999999999999877665555544331 110 1111 12211110
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC----CCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig----~P~vlLLD 790 (800)
+. ...+||+||+||+++|++|.. +|++++||
T Consensus 72 --------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllD 106 (162)
T cd03227 72 --------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILD 106 (162)
T ss_pred --------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 10 012299999999999999986 88999999
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-08 Score=99.06 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHc----CCCcEEEEc
Q 003716 766 YSGGMKRRLSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 766 LSGG~KrRLsiA~ALi----g~P~vlLLD 790 (800)
||||||||+++|++++ .+|+++++|
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilD 123 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLD 123 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999999999996 799999999
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-08 Score=100.00 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.9
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl 681 (800)
-..++++.+|++++|+|||||||||++++|++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 344556668999999999999999999999954
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-08 Score=102.10 Aligned_cols=128 Identities=18% Similarity=0.116 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CcceEEECCeecCccHHHhhcceEEecCCCCC--CCC
Q 003716 660 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL--WET 719 (800)
Q Consensus 660 i~gLLGpNGAGKTTLl-k~LtGl~~p-----------------tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L--~~~ 719 (800)
.++|+|+||+|||||+ +.++|..++ +.|.+.+++.|+....+......+|..+.+.+ .-+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 3789999999999999 689998764 46788888888753211111112333333221 111
Q ss_pred CCH---HHHHHHH-hhh----cCC-------C----chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 720 LTG---REHLLFY-GRL----KNL-------K----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 720 LTv---~E~L~~~-~~l----kg~-------~----~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+|- .+++..+ ..+ .++ + ..+......+..+..++. +....+.+-.|-+++++.||+++
T Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 91 VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EEEEeCCCCCCHHHHHHHHHHHH
Confidence 221 1222111 000 111 1 111111222334444432 33333333344499999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 168 ~~~p~~~~ld 177 (215)
T PTZ00132 168 TNDPNLVFVG 177 (215)
T ss_pred hhcccceecC
Confidence 9999999999
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=108.33 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC---CeecCc--
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ---GLDIRT-- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~---G~~i~~-- 698 (800)
...+..+++++.|.. ...+++.++ .|.+||+++|+|+||+|||||+++|+|+.+|+.|.+.+. |.++..
T Consensus 137 p~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 457899999999974 257999996 999999999999999999999999999999999999885 455542
Q ss_pred --cHHHh-hcceEEecCCCC
Q 003716 699 --DMDRI-YTSMGVCPQEDL 715 (800)
Q Consensus 699 --~~~~~-r~~IGycpQ~~~ 715 (800)
..... ++.|++++|.+.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 11222 357999999864
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-08 Score=98.54 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=62.7
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCC--CCCCCCCCHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--DLLWETLTGRE 724 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~--~~L~~~LTv~E 724 (800)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+..-... ..+..+++..|. +...+..+..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 34455677899999999999999999999999999999999999977432211 112345665544 44567789999
Q ss_pred HHHHHhhh
Q 003716 725 HLLFYGRL 732 (800)
Q Consensus 725 ~L~~~~~l 732 (800)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88765554
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=104.80 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=89.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
+++..+.+++.|.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35667778888853 25688885 99999999999999999999999999999999998887666432
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc---
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi--- 781 (800)
.+++|.+....... ++.+ ...=....+.|.|+|+|+..+.+.+
T Consensus 195 ---------------~ev~e~~~~~l~~~------------------gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ---------------REVKDFIRKELGEE------------------GMRK-SVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ---------------ccHHHHHHHHhhhc------------------ccce-eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 24455433211111 1211 1112446778999999999999888
Q ss_pred ----CCCcEEEEccCCc
Q 003716 782 ----GNPKVRLSLSSNR 794 (800)
Q Consensus 782 ----g~P~vlLLD~~~~ 794 (800)
|++-++++|.=-|
T Consensus 241 fr~~G~~VLlilDslTr 257 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHcCCcEEEEecchHH
Confidence 9999999994333
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-07 Score=103.41 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=80.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc-ceEEecCC---CCCCCCCCHHHHHHHHhh
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGR 731 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~-~IGycpQ~---~~L~~~LTv~E~L~~~~~ 731 (800)
.+||+.||+|.||-||||-+++++|-++|.-|.- .++-+-.+-....|. .+---+|. +.+-......+-..+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999987743 111111110000000 00000111 111111111111122222
Q ss_pred hcCC-----CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 732 LKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 732 lkg~-----~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+|. ...+.++..+++++.++|. ...++.+.+||||+-||.++|.+.+.+.++...|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEec
Confidence 2221 1122233566777888886 4789999999999999999999999999999999
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-07 Score=101.51 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEE---CCeecCccHHH-h---hcceEEe-----c
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV---QGLDIRTDMDR-I---YTSMGVC-----P 711 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i---~G~~i~~~~~~-~---r~~IGyc-----p 711 (800)
..|++++ +.+.+||.++|+|+||+|||||+++|+|..++ +.|.+.+ .|.++..-.++ . ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5699998 99999999999999999999999999999854 4466666 44555321111 1 1234555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCccccccCCCCC
Q 003716 712 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYS 767 (800)
Q Consensus 712 Q~~~--L~~~LTv~E~L~~~~~lkg~~---~~~~~~~v~~~L~~l~L~---~~~~~d~~~~~LS 767 (800)
|.+. +.+.+ +...+.-+.+.+|.. ..+...++.++++.++|. .......+++.+|
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 8753 34444 444454444445533 256678899999999994 1135677777776
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-07 Score=93.60 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=64.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~ 739 (800)
++||.|++||||||+.++|.+++ ..|.+.+-+. ++. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~------------------D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ------------------DSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe------------------ccc-ccccccccHHHhccCCCCCCCcc
Confidence 57999999999999999999988 3344433333 221 11122222222111112222222
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++++|
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~e 105 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILE 105 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEe
Confidence 233445566666554 35678888999999876655 57889999999
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-07 Score=91.82 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
+||+++|+|+|||||||++++|+|++.+ +.++|.++.......+...|+.+|+...++.+++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999887 6889988854322222346777777666666666666653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=110.50 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=93.7
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCcceEEECCeecCc-----------cHHHhh
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRT-----------DMDRIY 704 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt----------Gl~~ptsG~I~i~G~~i~~-----------~~~~~r 704 (800)
.=|+|++.+|+-|..+++.|.+|||||||++=.. |.. .-+--|.|+-.+|.. -.+++|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 3489999999999999999999999999996433 322 223347777666521 112222
Q ss_pred cc----------------------eEEe----------------cCCC-----------------CCC--------CCCC
Q 003716 705 TS----------------------MGVC----------------PQED-----------------LLW--------ETLT 721 (800)
Q Consensus 705 ~~----------------------IGyc----------------pQ~~-----------------~L~--------~~LT 721 (800)
+- =|-| |.-. .-| -+||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 11 1222 2110 001 2578
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC---CcEEEEc
Q 003716 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVRLSL 790 (800)
Q Consensus 722 v~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~---P~vlLLD 790 (800)
|.|-+.||... .. -.+.-+.|+.+||.. -.+.++..+|||||.||+-+|.-|..+ +.+++||
T Consensus 1663 v~ea~~~F~~~-----~~-i~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1663 IEEVAETFPFL-----KK-IQKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred HHHHHHHhhcc-----HH-HHHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 88888887432 11 234467888999974 356899999999999999999999865 7899999
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.5e-07 Score=92.01 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=50.4
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|++++..+ ++++|+||||+||||++|++++..-.. + .|..+.. .+..++++.| ++..+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp~----~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVPA----SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeecc----ccceecceee---EeccCCchh
Confidence 4689999999987 999999999999999999998754221 1 1222211 1245677654 567788888
Q ss_pred HHHH
Q 003716 725 HLLF 728 (800)
Q Consensus 725 ~L~~ 728 (800)
++..
T Consensus 85 ~ls~ 88 (216)
T cd03284 85 DLAG 88 (216)
T ss_pred hhcc
Confidence 7753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-07 Score=109.59 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=62.3
Q ss_pred eeEEEEcCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCcceEEECCeecCccHHHhhcceEEecCCCC-CCCCCCHHHHH
Q 003716 650 GLSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHL 726 (800)
Q Consensus 650 ~lsl~I~~G-Ei~gLLGpNGAGKTTLlk~LtGl-~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~-L~~~LTv~E~L 726 (800)
.+++.+.++ ++++|.||||+||||++|+|+|. +.+..| .++|.+.. .++ ..+.+
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~~~~---~~d~i 369 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHSEIP---YFEEI 369 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCcccccc---chhhe
Confidence 478888877 99999999999999999999986 233222 14444431 111 11111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+..+ +.. +......+++|+||+|+..+++++ .+|+++|||
T Consensus 370 --~~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlD 409 (771)
T TIGR01069 370 --FADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFD 409 (771)
T ss_pred --eeec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEec
Confidence 1111 000 122344678999999999998876 899999999
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-06 Score=91.90 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcce----EEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~----I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l 732 (800)
+..++||.|+||||||||.+.|++++++++|. +.+++.... ...++..|++++.+. .+.+++.+.+.++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~---~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD---NAVLDAHGLRPRKGA-PETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC---HHHHHhcccccccCC-CCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999998 444443322 223445788887543 4677888888887776
Q ss_pred c
Q 003716 733 K 733 (800)
Q Consensus 733 k 733 (800)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 5
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.7e-07 Score=95.70 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceE--EEC--CeecCccHHHhhcc---eEEecCCCCCCCCCCHHHH
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQ--GLDIRTDMDRIYTS---MGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 653 l~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I--~i~--G~~i~~~~~~~r~~---IGycpQ~~~L~~~LTv~E~ 725 (800)
+.+.+||..+|+|++|+||||++++|.+......+++ ++. |.. ..+..++.+. +-++-+.+. ...++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 5788999999999999999999999999988764433 222 111 1123333332 233334332 12222
Q ss_pred HHH-H------h--hhcCCC----chhHHHHHHHHHHHcCCCCCccccccCCCCChhH--------HHHHHHHHHHcCCC
Q 003716 726 LLF-Y------G--RLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVAISLIGNP 784 (800)
Q Consensus 726 L~~-~------~--~lkg~~----~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~--------KrRLsiA~ALig~P 784 (800)
... + . +-.|.. -+++. +..+..+.+.+ .....+|||+ +||+++|+++..++
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~-r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSIT-RLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHH-Hhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 211 0 0 111211 01221 22223333333 2334579999 99999999998999
Q ss_pred cEEEE
Q 003716 785 KVRLS 789 (800)
Q Consensus 785 ~vlLL 789 (800)
+|.+|
T Consensus 157 sIt~l 161 (249)
T cd01128 157 SLTII 161 (249)
T ss_pred ceEEe
Confidence 99876
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-06 Score=98.64 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=58.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec---Cc------cHHHhhcceEEecCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RT------DMDRIYTSMGVCPQEDL 715 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i---~~------~~~~~r~~IGycpQ~~~ 715 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.|.+.|++- .. ....+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999965443 21 12235678999987543
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-06 Score=95.29 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC--CCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~--ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk 733 (800)
.++||.|+||||||||.++|.+++. |++|+|.+-+.|--......++..|+. |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 4899999999999999999999998 788998876655432222334456654 6666778889998888877765
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=88.32 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.0
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~ 682 (800)
-++++++++.+| +.+|+|+|||||||++.+|..+.
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 456788898887 99999999999999999987544
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=95.31 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC---cEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P---~vlLLD 790 (800)
+|||.|-..||..... + .+.-+.|..+||.- -.+.+++.+|||||.||+-+|.-|.... .+++||
T Consensus 783 ~MTveEA~~FF~~~p~-----I-~rkLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcchH-----H-HHHHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 5888998888865421 2 23345677799963 3568999999999999999999999877 999999
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.2e-06 Score=84.48 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=36.9
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCcceEEECCeecCccHHHhhcceEEecCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--l~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
+=+|++++=..+.++.|.||||+||||++|.+.. .+ +..|...... .-.++|..|.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i 75 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKI 75 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeee
Confidence 4456665422237899999999999999999984 33 4455543321 1346777775
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=91.62 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=61.0
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
++.+.-.+++|++++++|+||+|||||++.|+|...++.|+|.+++..... ...++.+++++|...+++. .+..++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhhc
Confidence 555666678999999999999999999999999999999999998754322 1235679999998777764 4554444
Q ss_pred H
Q 003716 728 F 728 (800)
Q Consensus 728 ~ 728 (800)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 3
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.4e-06 Score=83.46 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNL 735 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~ 735 (800)
|++++|+|||||||||++++|++...+ .+.+.+..+... ....+..+++.+|+.. ..+.-...|.-.+++..+|.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 789999999999999999999999876 577877777542 2234467888888732 11221223333445555666
Q ss_pred C
Q 003716 736 K 736 (800)
Q Consensus 736 ~ 736 (800)
+
T Consensus 79 ~ 79 (186)
T PRK10078 79 G 79 (186)
T ss_pred c
Confidence 5
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.2e-06 Score=91.80 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=62.7
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE---CCeecCccHHHhhc-ceEEecCCCCC---C-CC
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 719 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i---~G~~i~~~~~~~r~-~IGycpQ~~~L---~-~~ 719 (800)
++.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+.....++. ..|++.+.+.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444454 5899999999999999999999999999999976 45544443333332 37899998877 3 46
Q ss_pred CCHHHHHHHHhhhc
Q 003716 720 LTGREHLLFYGRLK 733 (800)
Q Consensus 720 LTv~E~L~~~~~lk 733 (800)
++..|....|..++
T Consensus 231 ~~~~~~~~~f~~~~ 244 (287)
T cd01854 231 IDPEELAHYFPEFR 244 (287)
T ss_pred CCHHHHHHHhHHHH
Confidence 88888888766543
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.1e-06 Score=93.29 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=57.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCccHHHh-----hcceEEecCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDRI-----YTSMGVCPQE 713 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~~~~~~-----r~~IGycpQ~ 713 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++. |.|..+|.++..-.++. ++++++++..
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 5799999 9999999999999999999999999999999987 99999999886422222 3567777654
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.1e-06 Score=95.11 Aligned_cols=95 Identities=22% Similarity=0.390 Sum_probs=56.1
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 003716 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN 734 (800)
Q Consensus 655 I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg 734 (800)
+++|++++|+||||+|||||++.|+|...-..| ...+|++..+.. .....|.+..++++.|
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------------~~~v~~i~~d~~---rigalEQL~~~a~ilG 248 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------------ADKVALLTTDSY---RIGGHEQLRIYGKLLG 248 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecCCc---chhHHHHHHHHHHHcC
Confidence 368999999999999999999999985311000 012344443332 1356788888998888
Q ss_pred CCchhHHHH--HHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 735 LKGPALTQA--VEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 735 ~~~~~~~~~--v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++....... ....+. ++. +.....+.+ .|+.||.
T Consensus 249 vp~~~v~~~~dl~~al~--~l~--~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 249 VSVRSIKDIADLQLMLH--ELR--GKHMVLIDT--VGMSQRD 284 (420)
T ss_pred CceecCCCHHHHHHHHH--Hhc--CCCEEEecC--CCCCcch
Confidence 764322222 222333 333 233444554 4777654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-06 Score=88.17 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRT 684 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~p 684 (800)
++|+++||.|+||||||||.+.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.3e-06 Score=90.30 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=57.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H--HHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M--DRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~--~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
++|++++++||||+||||++..|++.+.+..|+|.+-+.|.... . ...+..+++++|.....+..++.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999889999988887421 1 1224568999997666665667777654
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-06 Score=92.26 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=56.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+..+.+++.+.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|...++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 35777788888853 36799999 9999999999999999999999999999999999988776654
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=88.04 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=46.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 5799999 9999999999999999999999999999999999888776643
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-06 Score=88.20 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH----cCCCcEEEEc
Q 003716 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVRLSL 790 (800)
Q Consensus 741 ~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL----ig~P~vlLLD 790 (800)
.+.+.+.++.+++.. ..+|||||..++||.-| .++.++++||
T Consensus 120 ~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilD 165 (220)
T PF02463_consen 120 LKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLILD 165 (220)
T ss_dssp HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEE
T ss_pred ccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence 356677777777752 19999999999998654 4688999999
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-06 Score=84.41 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=24.2
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 758 ~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++..+++|+|++|...++ ..+.+|+++|+|
T Consensus 54 ~~~~~~s~fs~~~~~l~~~l-~~~~~~~llllD 85 (185)
T smart00534 54 SLAQGLSTFMVEMKETANIL-KNATENSLVLLD 85 (185)
T ss_pred chhccccHHHHHHHHHHHHH-HhCCCCeEEEEe
Confidence 56778889999998743333 335699999999
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=93.68 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=55.3
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
+++++.|+. +.+++++++.+..|+.++|+|+||+||||+++.|.|+++|.+|++.+++..|
T Consensus 188 ~d~~~v~Gq------~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQ------EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECc------HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 478888863 4699999999999999999999999999999999999999999998887665
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.7e-05 Score=90.52 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=56.4
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCccHHHh----hcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDRI----YTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~~~~~~----r~~IGycpQ~~ 714 (800)
..|++.+ +.+.+||+++|+|+||+|||||+++|+|+.+|+. |.|.++|.++..-.+.. .+..++++|..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 4577777 9999999999999999999999999999999986 99999999985422221 24577787764
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.82 E-value=7e-06 Score=91.83 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCC--Cc-ceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRT--TS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--ts-G~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l 732 (800)
++|..+.+.||+|||||||++.|.+.+.+ .. +.|...+.++.-..+..++..+.+.|...--...+-.+-+.- .+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~--aL 209 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN--AL 209 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH--Hh
Confidence 58899999999999999999999998843 33 456555544433333344456788887532112233333332 12
Q ss_pred cCCC------chhHHHHHHHHHHHcCCCC-----------CccccccCCCCChhHHHHH
Q 003716 733 KNLK------GPALTQAVEESLKSVNLFH-----------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 733 kg~~------~~~~~~~v~~~L~~l~L~~-----------~~~~d~~~~~LSGG~KrRL 774 (800)
+.-+ +-...+.++.+++...-.| .+..++....+|+|+|--+
T Consensus 210 R~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 210 RRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred ccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 2111 1222344555666532221 0234556677999887543
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.5e-05 Score=88.01 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=57.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHh----hcceEEecCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI----YTSMGVCPQEDLLW 717 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~----r~~IGycpQ~~~L~ 717 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+...|.+-+. -.++. ....+++.|.....
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 5699999 9999999999999999999999999999999999998885543321 11111 12356777776665
Q ss_pred CCC
Q 003716 718 ETL 720 (800)
Q Consensus 718 ~~L 720 (800)
+.+
T Consensus 212 p~~ 214 (422)
T TIGR02546 212 PSL 214 (422)
T ss_pred CHH
Confidence 554
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=8e-05 Score=78.39 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=41.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCcceEEECC
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTL-lk~LtGl~~ptsG~I~i~G 693 (800)
+.+++|.+.+++ .+++|+++.|.|+|||||||+ ++++.+..++....+++..
T Consensus 8 ~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 8 LSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred EEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 567778877753 278999999999999999999 7999998776555566553
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=88.58 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=55.0
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
.++++.++.+++|++++|+||||+|||||+..|++......| +++++++..+.. .....|+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G----------------~~~V~lit~D~~---R~ga~Eq 185 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG----------------ASKVALLTTDSY---RIGGHEQ 185 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecccc---cccHHHH
Confidence 467788888999999999999999999999999885422111 134666665443 2367899
Q ss_pred HHHHhhhcCCCc
Q 003716 726 LLFYGRLKNLKG 737 (800)
Q Consensus 726 L~~~~~lkg~~~ 737 (800)
|..|+++.|++-
T Consensus 186 L~~~a~~~gv~~ 197 (374)
T PRK14722 186 LRIFGKILGVPV 197 (374)
T ss_pred HHHHHHHcCCce
Confidence 999998888753
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=66.73 Aligned_cols=40 Identities=35% Similarity=0.620 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-ceEEECCeec
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDI 696 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-G~I~i~G~~i 696 (800)
+++.+.|.||+|+||||+++.|+..+.... +-++++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 467899999999999999999999987765 5666665443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=88.51 Aligned_cols=51 Identities=27% Similarity=0.446 Sum_probs=47.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|...++.|.+...|+.-
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 5699999 99999999999999999999999999999999999998888543
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.1e-05 Score=88.08 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=47.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+++ .++.+.+||.++|+|+||+|||||+++|+|..+|+.|.+.+.|+.-+
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 45776 69999999999999999999999999999999999999998887654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9e-05 Score=89.44 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=49.1
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
++++.++.+++|++++++||||+||||++..|++.+....|. ++|+++..+. ......|.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt---~RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDS---FRIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCcc---cchHHHHHH
Confidence 455666777889999999999999999999999987655541 1233333332 112346777
Q ss_pred HHHhhhcCCC
Q 003716 727 LFYGRLKNLK 736 (800)
Q Consensus 727 ~~~~~lkg~~ 736 (800)
..|+.+.|++
T Consensus 235 ~~~a~~~gvp 244 (767)
T PRK14723 235 RIYGRILGVP 244 (767)
T ss_pred HHHHHhCCCC
Confidence 7777766654
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.8e-05 Score=87.37 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=56.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH---------HHhhcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---------DRIYTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~---------~~~r~~IGycpQ~~ 714 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++..+++.|.+...|+..++-. +..++.+-++.+.|
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd 202 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD 202 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC
Confidence 5699999 999999999999999999999999999999999999988887653211 11234566777765
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.5e-05 Score=81.71 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEE
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRT--TSGTAYV 691 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i 691 (800)
++||.|+||||||||.+.|.+.+.+ .+|+|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 4455544
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=5e-05 Score=82.99 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE---CCeecCccHHHh-hcceEEecCCCCCC----CCCCHHHHHHH
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRI-YTSMGVCPQEDLLW----ETLTGREHLLF 728 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i---~G~~i~~~~~~~-r~~IGycpQ~~~L~----~~LTv~E~L~~ 728 (800)
+|++++++|+||+|||||+|.|.|...+..|+|.. .|+..++..... ....|++.+.+.+. ..++..|....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 58999999999999999999999999999999987 455444322211 12467888887776 45777766555
Q ss_pred Hhh
Q 003716 729 YGR 731 (800)
Q Consensus 729 ~~~ 731 (800)
|..
T Consensus 243 f~~ 245 (298)
T PRK00098 243 FPE 245 (298)
T ss_pred HHH
Confidence 543
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.1e-05 Score=87.74 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=46.1
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 5799999 99999999999999999999999999999999998777765543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.8e-05 Score=89.74 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
-++||.|||||||||+.++|.|.+ |..|.|.++|+.-. .+.+++.+|++.+++..++.|||.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~------~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS------SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc------hhhhCccCCChhhcchhHHHHHHHH
Confidence 389999999999999999999997 57899999998521 1236788999888888889998864
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.6e-05 Score=85.93 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=52.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
++.-+.+++.|.. ...+++.+ +.+.+||+++|+|+||+|||||+++|++..+|+.|.+...|+.
T Consensus 111 ~~~R~~~~~~~~t-----Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 111 PLKRAPIDEPLDV-----GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred HHhccCcceEeee-----eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 3444556666653 25799999 9999999999999999999999999999999998877666654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.3e-05 Score=63.61 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=30.2
Q ss_pred eeeeEEEEcC-CcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 648 VNGLSLALPS-GECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 648 l~~lsl~I~~-GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
.++-.+++.+ |+++.|.|+|||||||++.+|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677775 6799999999999999999887666554
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.5e-05 Score=78.81 Aligned_cols=39 Identities=31% Similarity=0.573 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCC------------CCcceEEECCeec
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDI 696 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~------------ptsG~I~i~G~~i 696 (800)
++|++++|+||+|||||||+++|.+..+ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999985 77788 577775
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.1e-05 Score=87.56 Aligned_cols=52 Identities=27% Similarity=0.539 Sum_probs=44.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~ 697 (800)
..|++++ +.+.+||+++|+|+||+|||||+++|+|...|+- |.|-..|.+++
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~ 210 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVK 210 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHH
Confidence 6799999 9999999999999999999999999999988863 55555555543
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.3e-05 Score=80.96 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=41.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCcceEEE
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYV 691 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG-l~~ptsG~I~i 691 (800)
+.+.+|+++++.+|++++|.||||+||||++++++| .+.+..|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999999999999999 66777886543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.7e-05 Score=92.13 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCcc-ccccCCCCChhHHHHHHHHHHHcCCC--
Q 003716 718 ETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 784 (800)
Q Consensus 718 ~~LTv~E~L~~~~~lkg~~~----------~~~~~~v~~~L~~l~L~~~~~-~d~~~~~LSGG~KrRLsiA~ALig~P-- 784 (800)
-.+||.|.+.|...+ +.+. +++.++++ .|+.+||.+ . +|+++.+|||||||||.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 457888888886554 2222 13344454 688899963 4 79999999999999999999999997
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 511 ~llILD 516 (943)
T PRK00349 511 VLYVLD 516 (943)
T ss_pred cEEEec
Confidence 999999
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=5e-05 Score=86.64 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=48.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++.+.+...|+.-+.
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergre 197 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGRE 197 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchh
Confidence 4589999 9999999999999999999999999999999999999888877643
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=91.21 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC--cEE
Q 003716 719 TLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVR 787 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~---------~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P--~vl 787 (800)
.||+.|.+.|+..+.--+. +++.+++ +.|+.+||.+ -.+++.+.+|||||+|||.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~-l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY-LTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 5789999888876531110 1122222 2367788852 1269999999999999999999999986 899
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
+||
T Consensus 512 ILD 514 (924)
T TIGR00630 512 VLD 514 (924)
T ss_pred EEc
Confidence 999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=73.43 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-----------CCeecCc----cHH-Hh-hcceEEecCCCCCCCCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-----------QGLDIRT----DMD-RI-YTSMGVCPQEDLLWETL 720 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-----------~G~~i~~----~~~-~~-r~~IGycpQ~~~L~~~L 720 (800)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+... +.. .. .+.++..+|...++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 54444 4444321 111 12 23488888887776666
Q ss_pred CHH
Q 003716 721 TGR 723 (800)
Q Consensus 721 Tv~ 723 (800)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 653
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.56 E-value=9e-05 Score=81.32 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=55.8
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCC-CCCCCCHHHHHH
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHLL 727 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~-L~~~LTv~E~L~ 727 (800)
+=+++.++.|+.+++.|++||||||++++|+|++++..|.+.++. ..+-....+..+++..+... -....|..+.+.
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCHHHHHH
Confidence 336788999999999999999999999999999999999988863 21100011234555444321 134567877776
Q ss_pred HHhh
Q 003716 728 FYGR 731 (800)
Q Consensus 728 ~~~~ 731 (800)
...+
T Consensus 213 ~~Lr 216 (308)
T TIGR02788 213 SCLR 216 (308)
T ss_pred HHhc
Confidence 5433
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.3e-05 Score=77.58 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=43.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-cceEEECCeecCccHHHhhcceEEecCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQED 714 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-sG~I~i~G~~i~~~~~~~r~~IGycpQ~~ 714 (800)
++|++++|+|+|||||||+.+.|.+.+.+. .|.++++|.++... ....+||.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~---~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG---LCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh---hhhcCCcCcccH
Confidence 367899999999999999999999977654 46899999877532 223578877764
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0001 Score=84.02 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=45.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+..-|..
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 4588887 9999999999999999999999999999999999988766654
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=2.9e-05 Score=77.69 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=28.0
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 760 DKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 760 d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+....+||+++.+..+++..+.+|+++++|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllD 103 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIID 103 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEE
Confidence 4556679999999999999999999999999
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.6e-05 Score=81.10 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=39.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED 714 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~ 714 (800)
++||.|+|||||||+.++|+|++++..|.+...+ ++.......++..|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKGRKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence 4799999999999999999999999877655433 44332222345577777654
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.3e-05 Score=75.49 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=41.4
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--------CCCCCcceEEECCeec
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--------ITRTTSGTAYVQGLDI 696 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--------l~~ptsG~I~i~G~~i 696 (800)
+++++++..+++++ +++|++|||||||++.+++ ...|+.|++.++|.++
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 68888999888888 9999999999999999998 4556678888887654
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=97.52 E-value=3e-05 Score=73.87 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC--------------CCCCcceEEECCeecC
Q 003716 661 FGMLGPNGAGKTTFISMMIGI--------------TRTTSGTAYVQGLDIR 697 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~LtGl--------------~~ptsG~I~i~G~~i~ 697 (800)
++|+|++|||||||++.|+|. ..++.|.+.+...|+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 52 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG 52 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence 589999999999999999998 3333455566666653
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.9e-05 Score=76.39 Aligned_cols=56 Identities=29% Similarity=0.365 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhhcceEEecCCCCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLL 716 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r~~IGycpQ~~~L 716 (800)
.++|+|++|||||||++.+.+.+++..| +.+-..++... ..+..+..|+++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 5799999999999999999999888756 44444555432 23334567888887653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.6e-05 Score=85.13 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=43.0
Q ss_pred eeeeeeEEEE---cCCcE-----EEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCc
Q 003716 646 VAVNGLSLAL---PSGEC-----FGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT 698 (800)
Q Consensus 646 ~al~~lsl~I---~~GEi-----~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~ 698 (800)
.+++++++.+ ++|+. +||.|++|||||||.+.|.+++++. .|.|.++|..+..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence 3556666665 45665 9999999999999999999999875 6889999988754
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00022 Score=80.41 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=49.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeee-----------eeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVN-----------GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~-----------~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
..+.++||+..|++ ++.+|+ |+.+.|.+||..+|+||.|+||||++++|...+...
T Consensus 129 ~ri~Fe~LTf~YP~-----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 129 NRVLFENLTPLYPN-----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCeEEEEeeecCCC-----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 35899999999985 246786 999999999999999999999999999999976543
|
Members of this family differ in the specificity of RNA binding. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.47 E-value=6.6e-05 Score=72.23 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHh--CCCCCCcceE
Q 003716 661 FGMLGPNGAGKTTFISMMI--GITRTTSGTA 689 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~Lt--Gl~~ptsG~I 689 (800)
++|+|++|||||||++.|+ +..++.+|+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 6899999999999999999 6777777664
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.7e-05 Score=91.32 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE-EecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG-ycpQ~~~L~~~LTv~E~ 725 (800)
+=+|+++. ..+.++.|.|||++||||++|.+.... +-.++| +||-... ..+.+.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccce
Confidence 33445543 346789999999999999999995321 112333 4554421 01111121
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+ +. .+|-. +-..+..+++|+||+|++.+++++ .+|+++|||
T Consensus 374 i--~~-------------------~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlD 414 (782)
T PRK00409 374 I--FA-------------------DIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFD 414 (782)
T ss_pred E--EE-------------------ecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEec
Confidence 1 11 12221 234567889999999999999998 899999999
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=93.78 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHH----hCCCCCC-cceEEECCeecCccHHHhhcceEEecCC
Q 003716 658 GECFGMLGPNGAGKTTFISMM----IGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~L----tGl~~pt-sG~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
..+++|+|||||||||++.+| +|..+|. .|.++|.|.++... ...+..|.+.+++
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~-~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE-TDVRAQIRLQFRD 87 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc-HhhhheeEEEEEc
Confidence 349999999999999999999 6999996 79999988776543 2445667777753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00028 Score=67.94 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~ 739 (800)
++.|.|++|+||||+++.+++...+..|.+.+-+.+.... ..+ +.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~--~~~-------------------~~~~---~~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE--ELT-------------------ERLI---GES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH--HHH-------------------HHHh---hhh------
Confidence 3679999999999999999998877666665544332111 000 1000 000
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.....+.. ..........+.+..++...+++...+|+++++|
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviD 92 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILD 92 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00000111 1223333445566777888999999999999999
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=4.2e-05 Score=76.16 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=45.2
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-cceEEecCCCCCCCCCCHHHHHHHH
Q 003716 664 LGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY-TSMGVCPQEDLLWETLTGREHLLFY 729 (800)
Q Consensus 664 LGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r-~~IGycpQ~~~L~~~LTv~E~L~~~ 729 (800)
+|++||||||+.++|.+.+ |.++++|..+.. ...++ ...|+.+|+....+.++..++..+-
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP-RRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCc-hhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 5999999999999999987 678999854432 22233 3568888887666777777777653
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00019 Score=92.73 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=41.9
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
+.+..|.+.+| +++|+|+|||||||+|++|.|++.|+.|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 45667888876 999999999999999999999999999999988765
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00018 Score=82.00 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=37.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|+|...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 5688888 999999999999999999999999999988775
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00028 Score=69.43 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC----CCCCcc----eEEECCeec
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI----TRTTSG----TAYVQGLDI 696 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl----~~ptsG----~I~i~G~~i 696 (800)
.++++|+||||||||++.|+|. ..|+.| .+.++|.++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 4889999999999999999997 568889 888888765
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00015 Score=84.52 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=49.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+++.+++.+..|+.+.|+||||+||||++++|.|+++|.+|++.+++..+.
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 56889999999999999999999999999999999999999999998877663
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00054 Score=76.57 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=25.2
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMM 678 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~L 678 (800)
+++.++++.+| +.+|+|+|||||||++..|
T Consensus 14 ~~~~~l~f~~g-~nvi~G~NGsGKT~lLeAI 43 (349)
T PRK14079 14 LAPPTLAFPPG-VTAVVGENAAGKTNLLEAI 43 (349)
T ss_pred cccceEEeCCC-eEEEECCCCCCHHHHHHHH
Confidence 45667777776 8899999999999999884
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00032 Score=72.27 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=25.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~ 682 (800)
.++.++||.|++|||||||.+.|.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999987
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.21 E-value=5e-05 Score=76.11 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---CCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 658 GECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~Lt---Gl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
..+++++|++||||||+.+.|+ |+..++.|++.......... ..+.++.+.|...+.+..++.+++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE---RGKQLQAIMESGDLVPLDTVLDLLK 72 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 4689999999999999999999 98888888765442111111 1123444445545555555555554
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK06820 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00043 Score=79.23 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=42.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~ 694 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|++...++.+-+-.-|+
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 5799999 999999999999999999999999999999998754433343
|
|
| >PRK06936 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0004 Score=79.34 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=38.6
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|++...++-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 5699999 9999999999999999999999999999998864
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00095 Score=79.99 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc--------eEEECCeec
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--------TAYVQGLDI 696 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG--------~I~i~G~~i 696 (800)
...+.+.|+||||+||||+.+++.++.++..| -+.++|.++
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 34567999999999999999999998865544 367776554
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00025 Score=71.39 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl 681 (800)
.++|+|++|+|||||++.++|.
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3889999999999999999994
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=67.41 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeec
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDI 696 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i 696 (800)
++.+.||+||||||+++.|.+.+.+ ..|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6789999999999999998888764 356766654443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00056 Score=69.98 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~ 694 (800)
++++|++|+|||||+|+|+|...+++|.+..+..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~ 37 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV 37 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCcc
Confidence 6899999999999999999999888888877643
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00057 Score=68.30 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ 683 (800)
|++++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00058 Score=68.48 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=26.4
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG 680 (800)
.++++++++.+| +.+|.|+||+||||++.+|.-
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 457888888777 999999999999999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 800 | ||||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-12 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-11 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-08 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-04 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-04 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-04 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-04 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 8e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-04 |
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 3e-51
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
A++ +LRK +K + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 15 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + L G + YS GM R+L +A +L+ NP++
Sbjct: 129 RATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 8e-45
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 16/167 (9%)
Query: 620 EPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679
+ +L Y +K + +++ + G GPNG GKTT + +
Sbjct: 4 HHHHGSKLEIRDLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56
Query: 680 GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739
+ G G+ I +I P+E ++ ++ ++L L +K
Sbjct: 57 TYLKPLKGEIIYNGVPITKVKGKI----FFLPEEIIVPRKISVEDYLKAVASLYGVKV-- 110
Query: 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ ++L+SV + K+ G+ S G RR+ +A +L+ N ++
Sbjct: 111 NKNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLASTLLVNAEI 154
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 18/189 (9%)
Query: 608 TQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 666
+ L P SH +I D + ++ G+ + +S + G+ + + G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQLDQIGRMKQGK------TILKKISWQIAKGDKWILYGL 55
Query: 667 NGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIYTSMGVCPQE--DLLWETLT 721
NGAGKTT ++++ TSGT + G + + +G + E
Sbjct: 56 NGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGER 115
Query: 722 GREHLL--FYGRLKNLK--GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
+ ++ + + + + + LK V + A + G S G K+R+ +A
Sbjct: 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--KAQQYIGYLSTGEKQRVMIA 173
Query: 778 ISLIGNPKV 786
+L+G P+V
Sbjct: 174 RALMGQPQV 182
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ G E+ ++ ++L + GE +LGPNG+GKTT + + G+ SG
Sbjct: 5 KNVGITLSG--KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNI 60
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
++ G+++ + P+ + T+ + + Y LK L E LK
Sbjct: 61 FINGMEV-RKIRNYIRYSTNLPEAYEIGVTV--NDIVYLYEELKGLDR----DLFLEMLK 113
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
++ L + ++ K S G + +++L P++
Sbjct: 114 ALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 624 SHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682
I+ + L Y DG A+ G+++ + GE +LG NG GK+T GI
Sbjct: 4 EDYILKVEELNYNYS--DGTH---ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 683 RTTSGTAYVQGLDIRTD---MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKG 737
+ +SG I + ++ S+G+ Q ++ L+ + + + F G N+K
Sbjct: 59 KPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSF-G-AVNMKL 115
Query: 738 PA--LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
P + + V+ +LK + H + DK S G K+R+++A L+ PKV
Sbjct: 116 PEDEIRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 626 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
I N+ I+ G P EK A+ +SL + GEC + G G+GK+T + ++ G+
Sbjct: 2 RIEVVNVSHIFH--RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 685 TSGTAYVQGLDIRTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA-LT 741
TSG G I ++G+ Q ED + + + F +KN
Sbjct: 60 TSGDVLYDGER--KKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAF-A-VKNFYPDRDPV 114
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V+++++ V L D+ SGG KRR+++A ++ P +
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 5e-17
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIY 704
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI + +
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL- 79
Query: 705 TSMGVCP--QEDLLWETLTGREHLL--FYGRLKNLKGPAL-----------TQAVEESLK 749
G+ Q + +T E+LL ++ + + L+
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ L H + D++AG+ SGG + + + +L+ NPK+ +
Sbjct: 140 FLKLSH--LYDRKAGELSGGQMKLVEIGRALMTNPKMIV 176
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 22/179 (12%)
Query: 611 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 670
+ ++ +L E + + + + GE G+LGPNG G
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIG 306
Query: 671 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ---EDLLWETLTGREHLL 727
KTTF +++G G+ + + RI+ + Q E+ + L+
Sbjct: 307 KTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSS--- 363
Query: 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
EE K +NL + + SGG ++L +A +L +
Sbjct: 364 --------------WFFEEVTKRLNLHR--LLESNVNDLSGGELQKLYIAATLAKEADL 406
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 25/158 (15%)
Query: 645 KVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIGITRTTSGT-----------AYVQ 692
L P + G+LG NG GKTT + ++ G G +
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFR 70
Query: 693 GLDIRTDMDRIYTS----MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
G +I +Y++ + + + L G + + L +E
Sbjct: 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI-------LTKIDERGKKDEVK 123
Query: 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ +N+ + + +K A SGG +RL VA SL+ V
Sbjct: 124 ELLNMTN--LWNKDANILSGGGLQRLLVAASLLREADV 159
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 5e-16
Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 28/224 (12%)
Query: 572 LYFLQNF---------KKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPG 622
L L + F KP R F+ D R R ++
Sbjct: 288 LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDE-NVRFRPYEIRFTKL 346
Query: 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682
+ + YP + + + GE G++GPNG GKTTF+ M+ G+
Sbjct: 347 SERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406
Query: 683 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742
T G + D+ Y PQ T E L K
Sbjct: 407 EPTEGK-------VEWDLTVAYK-----PQYIKAEYEGTVYELLSKIDSSKLNSN----F 450
Query: 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E LK + + + D+ SGG +R+++A +L+ + +
Sbjct: 451 YKTELLKPLGIID--LYDRNVEDLSGGELQRVAIAATLLRDADI 492
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR------TTSGTAYVQGLD-- 695
V + G G++GPNG GKTT + ++ G S ++
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 696 -IRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
++ +R+ + + DLL + + G+ L LK EE +K
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL-------LKKVDEVGKFEEVVKE 215
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ L + V D++ + SGG +R+++A +L+
Sbjct: 216 LELEN--VLDRELHQLSGGELQRVAIAAALLRKAHF 249
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 606 DVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLG 665
++ H I N+ K++ A+N +SL +P+G+ +G++G
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIG 61
Query: 666 PNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLT 721
+GAGK+T I + + R T G+ V G ++ +++ + +G+ Q L + T
Sbjct: 62 ASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121
Query: 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVA 777
++ L N + + V E L V L DK Y SGG K+R+++A
Sbjct: 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----GDK-HDSYPSNLSGGQKQRVAIA 175
Query: 778 ISLIGNPKVRLS 789
+L NPKV L
Sbjct: 176 RALASNPKVLLC 187
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-15
Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 32/183 (17%)
Query: 611 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 670
R R ++ I YP + + + GE G++GPNG G
Sbjct: 265 RFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 671 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY----TSMGVCPQ---EDLLWETLTGR 723
KTTF+ M+ G+ T G I D+ Y + +LL + +
Sbjct: 325 KTTFVKMLAGVEEPTEGK-------IEWDLTVAYKPQYIKA--DYEGTVYELLSKIDASK 375
Query: 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783
+ E LK + + + D++ + SGG +R+++A +L+ +
Sbjct: 376 LN--------------SNFYKTELLKPLGIID--LYDREVNELSGGELQRVAIAATLLRD 419
Query: 784 PKV 786
+
Sbjct: 420 ADI 422
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT------R 683
+ L + R G V + G G++GPNG GK+T + ++ G
Sbjct: 21 EQLEEDCVHRYG--VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78
Query: 684 TTSGTAYVQGL---DIRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGRLKNLK 736
S ++ +++ +++ + + DL+ + + G+ L LK
Sbjct: 79 NDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL-------LK 131
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
T +EE +K++ L + V +++ SGG +R+++A +L+ N
Sbjct: 132 KADETGKLEEVVKALELEN--VLEREIQHLSGGELQRVAIAAALLRNATF 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
I + KIYPG +V G+S + GE G+LGP+G+GKTT + ++ G+ R T
Sbjct: 14 TIEFVGVEKIYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 686 SGTAYVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742
G ++ G + TD+ R ++G+ Q L++ +T +++ F R K + +
Sbjct: 69 KGDVWIGGKRV-TDLPPQKR---NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V E L+ + L A++ + SGG ++R+++A +L P+V L
Sbjct: 125 RVRELLRFMRL--ESYANRFPHELSGGQQQRVALARALAPRPQVLL 168
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 683
+ A+ +NL Y L+ L G+ +LG NG GK+T + +++GI R
Sbjct: 2 NKALSVENLGFYYQAE-----NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
Query: 684 TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF--YGRLKNLKGPALT 741
G +Y S+G PQ + + +L + P
Sbjct: 57 PIQGKI------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104
Query: 742 --QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
Q ++L +NL H +A ++ SGG ++ + +A ++ K+
Sbjct: 105 DYQVAMQALDYLNLTH--LAKREFTSLSGGQRQLILIARAIASECKL 149
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 18/176 (10%)
Query: 611 RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAG 670
E ++ + + S + YP +N E M+G NG G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 671 KTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 730
KTT I ++ G + G + L++ +I L ++ + G+
Sbjct: 391 KTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPKFP-GTVRQLFFKKIRGQ------- 441
Query: 731 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
P Q + +K + + + D++ SGG +R+++ ++L +
Sbjct: 442 ----FLNP---QFQTDVVKPLRIDD--IIDQEVQHLSGGELQRVAIVLALGIPADI 488
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 27/182 (14%)
Query: 625 HAIISDNLRKIYPGR-----DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679
AI NL N K+ G+ G++G NG GK+T + ++
Sbjct: 68 DAIQIINLPTNLEAHVTHRYSANSFKLHR---LPTPRPGQVLGLVGTNGIGKSTALKILA 124
Query: 680 GITRTTSG-----------TAYVQGLDIRTDMDRIYT---SMGVCPQE-DLLWETLTGRE 724
G + G Y +G +++ ++ + PQ D + + G
Sbjct: 125 GKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG-- 182
Query: 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784
+ G L L+ + V+ +K + L + V + K SGG +R ++ +S +
Sbjct: 183 PVQKVGELLKLRMEKSPEDVKRYIKILQLEN--VLKRDIEKLSGGELQRFAIGMSCVQEA 240
Query: 785 KV 786
V
Sbjct: 241 DV 242
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 702
E + LS + +GE ++GPNGAGK+T ++ M G+T G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSAT 69
Query: 703 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVAD 760
+ Q+ L + T+ + + ++ L
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-YLTLHQH-----DKTRTELLNDVAGALALDD--KLG 121
Query: 761 KQAGKYSGGMKRRLSVA 777
+ + SGG +R+ +A
Sbjct: 122 RSTNQLSGGEWQRVRLA 138
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++L + + + +++ LSL + SGE F +LGP GAGKT F+ ++ G SG
Sbjct: 5 ESLSRKW-------KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 690 YVQGLDIRTDM---DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
+ G D+ TD+ + Q L+ + +++L F G ++ +K + V +
Sbjct: 58 LLDGKDV-TDLSPEKH---DIAFVYQNYSLFPHMNVKKNLEF-G-MR-MKKIKDPKRVLD 110
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + + + D+ SGG ++R+++A +L+ NPK+ L
Sbjct: 111 TARDLKI--EHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
YP P + GL+ L G+ ++GPNG+GK+T ++ + T G +
Sbjct: 26 YPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL---LQNLYQPTGGKVLLD 79
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 751
G + D ++T + QE LL+ + RE++ YG + +
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGL----TRTPTMEEITAVAMES 133
Query: 752 N-------LFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
G V + + SGG ++ +++A +LI P++ +
Sbjct: 134 GAHDFISGFPQGYDTEVGET-GNQLSGGQRQAVALARALIRKPRLLI 179
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---DRIYTSMGVCPQED 714
+ +LGP GAGK+ F+ ++ GI + G + G DI T + R +G PQ+
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERR---GIGFVPQDY 79
Query: 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774
L+ L+ ++ + G L+N++ + V E + + + + D++ + SGG ++R+
Sbjct: 80 ALFPHLSVYRNIAY-G-LRNVERVERDRRVREMAEKLGI--AHLLDRKPARLSGGERQRV 135
Query: 775 SVAISLIGNPKVRL 788
++A +L+ P++ L
Sbjct: 136 ALARALVIQPRLLL 149
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+L K + +N +SL+L GE ++G +G GKTT + + G + SG
Sbjct: 8 GHLSKSFQNT------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 690 YVQGLDIRTDMDRIYT---SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA--LTQAV 744
+ G I + + +G QE +L+ LT ++ + G L N KG Q +
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY-G-LGNGKGRTAQERQRI 119
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
E L+ + +A + + SGG ++R ++A +L +P++ L
Sbjct: 120 EAMLELTGI--SELAGRYPHELSGGQQQRAALARALAPDPELIL 161
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-10
Identities = 37/166 (22%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
YP R P + GLSL + G+ ++G +G GK+T + + + R +G+ ++
Sbjct: 1040 YPTR---PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQL---LERFYDPMAGSVFLD 1093
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 750
G +I+ ++ + +G+ QE +L++ + E++ YG ++ + + K
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIA-YGD----NSRVVSYEEIVRAAKE 1147
Query: 751 VNLFHGGVA------DKQAG----KYSGGMKRRLSVAISLIGNPKV 786
N+ H + + + G + SGG K+R+++A +L+ P +
Sbjct: 1148 ANI-HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 30/166 (18%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
YP R E + GL+L + SG+ ++G +G GK+T + + + R G +
Sbjct: 397 YPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL---MQRLYDPLDGMVSID 450
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKS 750
G DIRT ++ + +GV QE +L+ T T E++ YGR +T +E+++K
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIR-YGR------EDVTMDEIEKAVKE 502
Query: 751 VNL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
N F V ++ + SGG K+R+++A +L+ NPK+
Sbjct: 503 ANAYDFIMKLPHQFDTLVGER-GAQLSGGQKQRIAIARALVRNPKI 547
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 8e-10
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 24/159 (15%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT 698
+ + + +S GP+G GK+T S+ + R T+G + G I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSL---LERFYQPTAGEITIDGQPIDN 68
Query: 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
++ + +G Q+ + T RE+L YG +G + + + L
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAG-TIRENLT-YGL----EGDYTDEDLWQVLDLAFA-RSF 121
Query: 758 VADKQAG----------KYSGGMKRRLSVAISLIGNPKV 786
V + K SGG ++RL++A + + NPK+
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 640 DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIR 697
+ ++ +PSG ++G G+GK+T + + R G + G ++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL---LYRFYDAEGDIKIGGKNVN 84
Query: 698 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 756
+ + I + +G+ PQ+ +L+ T + ++L YG+L A + V ++ KS L +
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNE-TIKYNIL-YGKLD-----ATDEEVIKATKSAQL-YD 136
Query: 757 GVA------DKQAG----KYSGGMKRRLSVAISLIGNPKV 786
+ D G K SGG ++R+++A L+ +PK+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 37/158 (23%)
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIY 704
+ ++L++ GE G++G +G+GK+T + I R +G + G D+ D + +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKL---IQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-VEESLKSVN-------LFHG 756
+GV Q+++L + +++ P ++ V + K L G
Sbjct: 83 RQVGVVLQDNVLLNR-SIIDNIS-LAN------PGMSVEKVIYAAKLAGAHDFISELREG 134
Query: 757 --------GVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G SGG ++R+++A +L+ NPK+
Sbjct: 135 YNTIVGEQGA------GLSGGQRQRIAIARALVNNPKI 166
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 40/168 (23%), Positives = 84/168 (50%), Gaps = 20/168 (11%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K++ VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++G
Sbjct: 7 KNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQE-DL--------LWETLTGREHLLFYGRLKNLKGPAL 740
Y + ++ V P++ + L+ LT E++ F + +
Sbjct: 63 YFDDRLV-ASNGKLI----VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ VEE K +++ V + + SG ++R+++A +L+ +P + L
Sbjct: 118 RKRVEEVAKILDI--HHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 38/261 (14%), Positives = 78/261 (29%), Gaps = 31/261 (11%)
Query: 529 ADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRK 588
D+S + + E+L V + + Y Q + +
Sbjct: 341 GDVSTTLQVVNELLKDETVAPRFKIVVEYIAAI---GADLIDERIIDQQAWFTHITPYMT 397
Query: 589 PSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAV 648
L + +K + + E + + Y + +
Sbjct: 398 IFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKIL------L 451
Query: 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708
N L L +G+ GPNG GK+T + + V G + + +Y
Sbjct: 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQVDGFPTQEECRTVY---- 499
Query: 709 VCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767
+ D + + + G +A+++ L F + S
Sbjct: 500 -VEHDIDGTHSDTSVLDFV-------FESGVGTKEAIKDKLIEFG-FTDEMIAMPISALS 550
Query: 768 GGMKRRLSVAISLIGNPKVRL 788
GG K +L++A +++ N + L
Sbjct: 551 GGWKMKLALARAVLRNADILL 571
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 608 TQERERVEQLLLEPGTSHAIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGE 659
+E EPG + + N+ YPG K + ++
Sbjct: 645 ELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG----TSKPQITDINFQCSLSS 700
Query: 660 CFGMLGPNGAGKTTFISMMIGITRTTSGT 688
++GPNGAGK+T I+++ G TSG
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGE 729
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700
+ + +S + G+ ++GP+GAGK+T + ++ +SG + G DI
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA- 759
+ + +GV PQ+ +L+ T +++ YGR+ A VE + ++ + H +
Sbjct: 124 ASLRSHIGVVPQDTVLFND-TIADNIR-YGRVT-----AGNDEVEAAAQAAGI-HDAIMA 175
Query: 760 -----DKQAG----KYSGGMKRRLSVAISLIGNPKV 786
Q G K SGG K+R+++A +++ P +
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 705
A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G G DI I
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI-N 79
Query: 706 SMGVC--PQEDLLWETLTGREHLL 727
MG+ P+ ++ LT E+L+
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLM 103
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 31/166 (18%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
Y ++G++ ++ G +LG G+GK+T +++ I R G V
Sbjct: 351 YFE----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL---IPRLIDPERGRVEVD 403
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTG--REHLLFYGRLKNLKGPALTQAVEESLK 749
LD+RT + + + PQE +L +G +E+L +G + A + E+ K
Sbjct: 404 ELDVRTVKLKDLRGHISAVPQETVL---FSGTIKENLK-WG-----REDATDDEIVEAAK 454
Query: 750 S------VNLFHGGVADK--QAGK-YSGGMKRRLSVAISLIGNPKV 786
+ G + + G+ +SGG K+RLS+A +L+ PKV
Sbjct: 455 IAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 77/574 (13%), Positives = 152/574 (26%), Gaps = 196/574 (34%)
Query: 6 APEPASFCTQTNALLRKNLTFQKRNV-----KTNIRLILF-----PFILCVII------- 48
+ + Q + L N F K NV +R L V+I
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSG 162
Query: 49 --VL-LQVLLD-RVVSNSDD--Y--KCGCNCVRKSGSDCVEEKCGIEYSTPQQA------ 94
+ L V L +V D + NC S +E Q
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLK-NC--NSPETVLE---------MLQKLLYQID 210
Query: 95 -QFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPDLPN--------ESCRI----DGSCP 141
+ + +A L N ++ + + SC
Sbjct: 211 PNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC- 266
Query: 142 ATILLTGNNQSFGQTLNKDMFKDTFSENPSDVMASLADNVLGSDSKTEITNYVEPAFVSD 201
ILLT + L+ ++ S + + K+ + Y++
Sbjct: 267 -KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-------DEVKSLLLKYLD------ 312
Query: 202 SPIYTIQSQCRPDSSFVVPVKVASIN---ISLVIRCLQ-GLNLWRKSSSEINDELYRGFR 257
CRP +P +V + N +S++ ++ GL W ++
Sbjct: 313 ---------CRPQD---LPREVLTTNPRRLSIIAESIRDGLATW------------DNWK 348
Query: 258 KGNSKRESNEILAAYDFLNSDLEK--------F--NVNI--------WYNSTYKNDTGNV 299
N + + I ++ + L + F + +I W++ +D V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVV 407
Query: 300 PIGLLRVPRS-INLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDVSSIIGTLFFTW 358
L + S + S+ I + ++
Sbjct: 408 VNKLHK--YSLVEKQPKESTISIPS----IYLELKVKLEN-------------------- 441
Query: 359 VVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSV 418
L I+ Y + L P +L Y Y
Sbjct: 442 -EYALHRSIVDH--YNIPKTF----DSDDL--IPPYLDQYFYSH---------------- 476
Query: 419 IGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFL 478
IG + +F +++++ + FL K I T +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR----FLEQ------K-------IRHDSTAWNASGS 519
Query: 479 LQSFVEDPSFPRRWITAMELYPGF-ALYRGLYEF 511
+ + ++ F + +I + P + L + +F
Sbjct: 520 ILNTLQQLKFYKPYICDND--PKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 54/359 (15%), Positives = 115/359 (32%), Gaps = 88/359 (24%)
Query: 423 FFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSF 482
F+TL S + V + L+I FL++ + + + S++ T + + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-------TRMYIEQRDRLY 120
Query: 483 VEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRG-HSMGTDGMSW--ADLSDSENGMK 539
++ F + ++ ++ Y L + L E + G +W D+ S
Sbjct: 121 NDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---- 174
Query: 540 EVLIIMF--VEWLLLLGIAYYVDKILSSGGAKGP---LYFLQNFKKKSRSSFRKPSLGRQ 594
+V M + WL + P L LQ + ++ S
Sbjct: 175 KVQCKMDFKIFWL-------------NLKNCNSPETVLEMLQKLLYQIDPNWT--SRSDH 219
Query: 595 DSKVFVSMEKPDVTQERERVEQLLLEPGTSHA-IISDNLRKIYPGRDGNPEKVAVNGLSL 653
S + + + + + +LL + ++ N++ N + A N +L
Sbjct: 220 SSNIKLRIH-----SIQAELRRLLKSKPYENCLLVLLNVQ--------NAK--AWNAFNL 264
Query: 654 ALPSGEC-----------FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702
C L + + +T + ++ LD R
Sbjct: 265 -----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL- 318
Query: 703 IYTSMGVCPQE---------DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN 752
P+E ++ E++ R+ L + K++ LT +E SL +
Sbjct: 319 --------PREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 48/323 (14%), Positives = 95/323 (29%), Gaps = 119/323 (36%)
Query: 530 DLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFL-------------- 575
D D ++ K +L +D I+ S A L
Sbjct: 34 DCKDVQDMPKSILS------------KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 576 -------QNFK---KKSRSSFRKPSLGRQ-----------DSKVFVSMEKPDVTQERERV 614
N+K ++ R+PS+ + D++VF K +V+ R+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVS----RL 134
Query: 615 EQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF 674
+ L + L ++ P + V + G+L G+GKT
Sbjct: 135 QPYL--------KLRQALLELRPA-----KNVLI------------DGVL---GSGKTWV 166
Query: 675 ISMMIGITRTTSGTAYVQGLDIRTDMD-RIY-TSMGVCPQEDLLWETLTGREHLL---FY 729
+ ++ MD +I+ ++ C + + E L + + +
Sbjct: 167 ALDV------------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 730 GRLKNLKGPAL-TQAVEESLKSVNLFHG-----------GVADKQAGK-YSGGMK----- 771
R + L +++ L+ L V + +A ++ K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 772 RRLSVAISLIGNPKVRLSLSSNR 794
R V L +SL +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHS 295
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 82/535 (15%), Positives = 143/535 (26%), Gaps = 162/535 (30%)
Query: 189 EITNYVEPAFVSDSPIYTIQSQCRP-------DSSFVVPVKVASINISLVIRCLQGLNLW 241
+I + E AFV + +Q + D + V+ + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 242 RKSSSEINDELYRGFRKGNSKRESNEILAAYDFLNSDLEKFNVNIWYNSTYKNDTGNVPI 301
+K E+ Y F K E + ++ YN NV
Sbjct: 80 QKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRL-----YNDNQVFAKYNVS- 132
Query: 302 GLLRVPRSINLASNAY-LRS--------LLGPGTQIL-------FDFVKEMPKTDSKLKL 345
R+ + L LR +LG G + + +M
Sbjct: 133 ---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-------- 181
Query: 346 DVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKL--RIMMKMHGLGDGPY-------WLI 396
+F W L L V E QKL +I D +
Sbjct: 182 ------FKIF--W--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 397 SYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSN 456
+ S Y C +V +V + N++ + + Q+ FL AA ++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAK--AWNAFNLSCKILLTTRFKQVT-DFLSAATTTH 288
Query: 457 VKTASVIGYICVFGT----GLLGAFLLQSFVEDPS-------------------FPRRW- 492
+ S+ + LL +L + P W
Sbjct: 289 I---SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 493 ----------ITAME-----LYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLS---DS 534
T +E L P A YR +++ LS S
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEP--AEYRKMFD-------------------RLSVFPPS 384
Query: 535 ENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQ 594
+ +L ++ W + I V ++ + K SL +
Sbjct: 385 AHIPTILLSLI---WFDV--IKSDVMVVV--------------------NKLHKYSLVEK 419
Query: 595 DSKVFVSMEKPDVTQE-RERVEQLLLEPGTSHAIISD--NLRKIYPGRDGNPEKV 646
K ++ P + E + ++E H I D N+ K + D P +
Sbjct: 420 QPKES-TISIPSIYLELKVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYL 469
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 608 TQERERVEQLLLEPGTSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGP 666
L+ +I L+K + G+ E + G+++ + GE ++GP
Sbjct: 5 HHHHHHSSGLVPRGSHMLQMIDVHQLKKSF----GSLE--VLKGINVHIREGEVVVVIGP 58
Query: 667 NGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIYTSMGVCPQEDLLWETLTGR 723
+G+GK+TF+ + + G + G+++ T+++++ +G+ Q L+ +T
Sbjct: 59 SGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118
Query: 724 EHLLFYGRLKNLKGP---ALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSV 776
++ +K K P A +A+E L V G+ D +A Y SGG +R+++
Sbjct: 119 NNITL-APMKVRKWPREKAEAKAMEL-LDKV-----GLKD-KAHAYPDSLSGGQAQRVAI 170
Query: 777 AISLIGNPKVRL 788
A +L PK+ L
Sbjct: 171 ARALAMEPKIML 182
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 41/182 (22%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K Y + G A+ ++L + GE ++GP+G+GK+T ++++ + + T G
Sbjct: 5 KNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDL----------------LWETLTGREHL---LFYG 730
Y+ + D+D ++L L LT E++ L +
Sbjct: 63 YIDNIKT-NDLDD----------DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111
Query: 731 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKV 786
+ G + E LK + ++ A SGG ++R+++A +L NP +
Sbjct: 112 YRGAMSGEERRKRALECLKMA-----ELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 787 RL 788
L
Sbjct: 167 IL 168
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 35/188 (18%)
Query: 623 TSHAIIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681
S + +L K Y G E + G+SL +G+ ++G +G+GK+TF+ + +
Sbjct: 2 MSENKLHVIDLHKRY----GGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55
Query: 682 TRTTSGTAYVQGLDIR--------------TDMDRIYTSMGVCPQEDLLWETLTGREHLL 727
+ + G V G +I + + T + + Q LW +T E+++
Sbjct: 56 EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 115
Query: 728 FYGRLKNLKGP---ALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISL 780
++ L A +A + L V G+ ++ GKY SGG ++R+S+A +L
Sbjct: 116 E-APIQVLGLSKHDARERA-LKYLAKV-----GIDERAQGKYPVHLSGGQQQRVSIARAL 168
Query: 781 IGNPKVRL 788
P V L
Sbjct: 169 AMEPDVLL 176
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 25/157 (15%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDM 700
E + ++L++ GE +G +G GK+T I++ I R TSG + G +I+ D
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINL---IPRFYDVTSGQILIDGHNIK-DF 408
Query: 701 DRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--- 755
+G+ Q+++L+ T +E++L GR A + V E+ K N
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENIL-LGRPT-----ATDEEVVEAAKMANAHDFIM 461
Query: 756 ---GG---VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G ++ K SGG K+RLS+A + NP +
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 39/199 (19%), Positives = 82/199 (41%), Gaps = 39/199 (19%)
Query: 603 EKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFG 662
EK + + +R + N+ YPGR E A+ ++L +P+G+
Sbjct: 327 EKDEGKRVIDRAT---------GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVA 373
Query: 663 MLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWE 718
++G +G+GK+T S+ ITR G + G D+R + + + + Q L+
Sbjct: 374 LVGRSGSGKSTIASL---ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 719 TLTGREHLLFYGRLKNLKGPALTQA-VEESLKSVNL----------FHGGVADKQAGKYS 767
T ++ Y R + ++ +EE+ + + + S
Sbjct: 431 D-TVANNIA-YARTE-----EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLS 482
Query: 768 GGMKRRLSVAISLIGNPKV 786
GG ++R+++A +L+ + +
Sbjct: 483 GGQRQRIAIARALLRDSPI 501
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ K + A+N ++L + GE +LGP+G+GK+T + + GI + TSG
Sbjct: 7 ENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 690 YVQGLDIRTDM---DR 702
Y D+ T++ DR
Sbjct: 61 YFDEKDV-TELPPKDR 75
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT 698
+ +K + ++ + G+ ++GP G+GKTT +++ + R G V G+DIR
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL---LMRFYDVDRGQILVDGIDIR- 420
Query: 699 DMDR--IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH- 755
+ R + +S+G+ Q+ +L+ T T +E+L YG A + ++E+ K + H
Sbjct: 421 KIKRSSLRSSIGIVLQDTILFST-TVKENLK-YGNPG-----ATDEEIKEAAKLTHSDHF 473
Query: 756 -----GG---VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G V S G ++ L++ + + NPK+
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQ 692
Y G+ EK A++ +S ++P G+ ++G +G+GK+T ++ TR SG+ +
Sbjct: 351 YQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL---FTRFYDVDSGSICLD 403
Query: 693 GLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 751
G D+R + + + Q L+ T ++ Y +G + +E++ +
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIA-YAA----EGEYTREQIEQAARQA 457
Query: 752 NL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + + SGG ++R+++A +L+ + V
Sbjct: 458 HAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVAIARALLRDAPV 501
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+ ++N++K+ R + G+SL++ GE ++G +G+GK+T + ++ + T
Sbjct: 5 LRAENIKKVI--RGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 687 GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE--------HLLFYGR---LKNL 735
G +++G ++ + E L L R+ +L+ L+N+
Sbjct: 59 GKVFLEGKEV-DYTN-----------EKELSL-LRNRKLGFVFQFHYLI--PELTALENV 103
Query: 736 KGPAL---------TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
P L + E L + L G ++ + SGG ++R+++A +L P +
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPIL 161
Query: 787 RL 788
Sbjct: 162 LF 163
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL K + AVN L+L + GE +LGP+G GKTT + M+ G+ T G
Sbjct: 15 ENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 690 YVQGLDIRTDM---DR 702
Y D+ T + DR
Sbjct: 69 YFGDRDV-TYLPPKDR 83
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 49/153 (32%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ +NG++ ++P G ++G G GK++ +S ++ G ++G
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------- 66
Query: 704 YTSMGVCPQEDLLW-ETLTGREHLLF--------YGR----------LKNLKGPALTQAV 744
S+ PQ+ W + + RE++LF Y L+ L T+
Sbjct: 67 --SVAYVPQQA--WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
E K VNL SGG K+R+S+A
Sbjct: 123 E---KGVNL-------------SGGQKQRVSLA 139
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++ K++ AV +SL + GE +LGP+G GKTT + M+ G+ + G
Sbjct: 7 VDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 690 YVQG 693
Y+
Sbjct: 61 YIGD 64
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 600 VSMEKPDVTQERERVEQLLLEP---GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 656
V ME +VT E L E ++ S+ + + ++ +
Sbjct: 5 VVME--NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693
G+ + G GAGKT+ + M++G + G G
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 49/153 (32%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+ ++ + G+ + G GAGKT+ + M++G + G G
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 704 YTSMGVCPQEDLLW-ETLTGREHLLF--------YGR----------LKNLKGPALTQAV 744
+ C Q W T +E+++F Y +
Sbjct: 70 --RISFCSQFS--WIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
E + L SGG + R+S+A
Sbjct: 126 E---GGITL-------------SGGQRARISLA 142
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 800 | ||||
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-31 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-28 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-23 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-19 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-19 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-18 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-07 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 1e-31
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
A++ +LRK K + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 2 AVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 55
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 56 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 115
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + L + YS GM R+L +A +L+ NP++ +
Sbjct: 116 RATEIAGLGE--KIKDRVSTYSKGMVRKLLIARALMVNPRLAI 156
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 121 bits (304), Expect = 2e-31
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+NL K + AVN L+L + GE +LGP+G GKTT + M+ G+ T G
Sbjct: 10 ENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
Y D T + ++ + Q +W +T E++ F ++K + + V + +
Sbjct: 64 YFGDRD-VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + + ++ + SGG ++R++VA +++ P V
Sbjct: 123 LLQI--EELLNRYPAQLSGGQRQRVAVARAIVVEPDV 157
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 2e-30
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R T G+
Sbjct: 5 SNITKVFH--QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 62
Query: 690 YVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
V G ++ +++ + +G+ Q L + T ++ L N + + V
Sbjct: 63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT 122
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E L V L G D SGG K+R+++A +L NPKV
Sbjct: 123 ELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKV 161
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 112 bits (281), Expect = 1e-28
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K + E V ++L + GE +GP+G GK+T + M+ G+ TSG
Sbjct: 4 QNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
++ D +G+ Q L+ L+ E++ F +L K + Q V + +
Sbjct: 58 FIGEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ L + D++ SGG ++R+++ +L+ P V
Sbjct: 117 VLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (262), Expect = 5e-26
Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++ K++ E AV +SL + GE +LGP+G GKTT + M+ G+ + G
Sbjct: 7 VDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 690 YVQG-----LDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
Y+ + + + + Q L+ +T +++ F +L+ + + Q V
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
E + + L + +++ + SGG ++R+++ +++ P+V
Sbjct: 121 REVAELLGL--TELLNRKPRELSGGQRQRVALGRAIVRKPQV 160
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 102 bits (257), Expect = 3e-25
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ K Y G A+ ++L + GE ++GP+G+GK+T ++++ + + T G
Sbjct: 5 KNVTKTYK--MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 690 YVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV 744
Y+ + D T +G Q+ L LT E++ K + +
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 745 EESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
+ +L+ + + + ++ A SGG ++R+++A +L NP + L
Sbjct: 123 KRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 101 bits (253), Expect = 1e-24
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+L Y A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G
Sbjct: 10 QSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 690 YVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES 747
G DI + + P+ ++ LT E+L+ + K + + +E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK-EGIKRDLEWI 122
Query: 748 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ G SGG ++ L++ +L+ PK+ +
Sbjct: 123 FSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM 162
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99.5 bits (248), Expect = 6e-24
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+L K Y G + G+SL +G+ ++G +G+GK+TF+ + + + + G
Sbjct: 6 IDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 690 YVQGLDI--------------RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKN 734
V G +I + + + T + + Q LW +T E+++ ++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 735 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785
L + + L V + K SGG ++R+S+A +L P
Sbjct: 120 LSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQRVSIARALAMEPD 169
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 98.1 bits (244), Expect = 2e-23
Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
+N+ K + A++G+S+++ G+ ++GPNG+GK+T I+++ G + G
Sbjct: 8 ENIVKYFGEF------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 690 YVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLTGREHLLF-------------YGRLKN 734
Y + DI + + + Q + +T E+LL + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 735 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
K + + + L+ + L H + D++AG+ SGG + + + +L+ NPK+ +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSH--LYDRKAGELSGGQMKLVEIGRALMTNPKMIV 173
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.5 bits (240), Expect = 2e-23
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+L Y +K + +++ + G GPNG GKTT + + + G
Sbjct: 7 DLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS 750
G+ I +I P+E ++ ++ ++L L +K + ++L+S
Sbjct: 60 YNGVPITKVKGKI----FFLPEEIIVPRKISVEDYLKAVASLYGVKVNK--NEIMDALES 113
Query: 751 VNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
V + K+ G+ S G RR+ +A +L+ N ++ +
Sbjct: 114 VEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYV 148
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.1 bits (241), Expect = 3e-23
Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
II N+ K++ VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ +
Sbjct: 3 RIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 686 SGTAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT 741
+G Y + + + +G+ Q L+ LT E++ F + +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ VEE K +++ H V + + SG ++R+++A +L+ +P + L
Sbjct: 119 KRVEEVAKILDIHH--VLNHFPRELSGAQQQRVALARALVKDPSLLL 163
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 88.6 bits (219), Expect = 2e-20
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++L + + +++ LSL + SGE F +LGP GAGKT F+ ++ G SG
Sbjct: 5 ESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ G TD+ + Q L+ + +++L F R+K +K P + V ++ +
Sbjct: 58 LLDG-KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTAR 113
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + H + D+ SGG ++R+++A +L+ NPK+ L
Sbjct: 114 DLKIEH--LLDRNPLTLSGGEQQRVALARALVTNPKILL 150
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 86.1 bits (213), Expect = 2e-19
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702
E + LS + +GE ++GPNGAGK+T ++ M G+T G+ G + +
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 69
Query: 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+ Q+ +L + K T+ + + ++ L +
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGALALDD--KLGRS 122
Query: 763 AGKYSGGMKRRLSVAISLI 781
+ SGG +R+ +A ++
Sbjct: 123 TNQLSGGEWQRVRLAAVVL 141
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.3 bits (216), Expect = 2e-19
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 600 VSMEKPDVTQERERVEQLLLE------PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSL 653
+ ME +VT E LLE H+ +N+ + GNP + ++L
Sbjct: 3 IIME--NVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP---VLKNINL 57
Query: 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE 713
+ GE + G G+GKT+ + +++G + G G + C Q
Sbjct: 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQF 105
Query: 714 DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMK 771
+ T +E+++F + ++ +A + V + SGG +
Sbjct: 106 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQR 164
Query: 772 RRLSVAISLIGNPKVRL 788
R+S+A ++ + + L
Sbjct: 165 ARISLARAVYKDADLYL 181
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 84.2 bits (208), Expect = 9e-19
Identities = 32/161 (19%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+R Y V ++ ++L++ GE G++G +G+GK+T ++ +G
Sbjct: 5 RNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 690 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+ G D+ D + + +GV Q+++L + +++ +++ + +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 749 KSVNLFHGG---VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
++ G + +Q SGG ++R+++A +L+ NPK+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 84.5 bits (209), Expect = 1e-18
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
D++ Y E + ++L++ GE +G +G GK+T I+++ TSG
Sbjct: 20 DHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 690 YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ G +I+ + + Q+D + + T +E++L GR A + V E+ K
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-GRPT-----ATDEEVVEAAK 129
Query: 750 SVNLFH-----GGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
N D + G+ SGG K+RLS+A + NP + +
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 177
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (207), Expect = 1e-18
Identities = 32/164 (19%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
++ YP R P+ + + GL+ L GE ++GPNG+GK+T +++ + + T G
Sbjct: 15 QDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 690 YVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF----YGRLKNLKGPALTQAV 744
+ G + + ++ + QE ++ + +E++ + ++ + A+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 745 EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + D+ + SGG ++ +++A +LI P V +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLI 174
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 82.2 bits (203), Expect = 4e-18
Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
++ Y + + +S GP+G GK+T S++ + T+G
Sbjct: 6 HVDFAYDDS-----EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 691 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749
+ G I ++ + +G Q+ + T RE+L + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 750 SVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
S + + G+ SGG ++RL++A + + NPK+ +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 82.2 bits (203), Expect = 5e-18
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
N+ YPGR E A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 17 RNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 690 YVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--E 746
+ G D+R + + + Q L+ Y R + + +A
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA--YARTEEYSREQIEEAARMAY 130
Query: 747 SLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
++ +N G+ D G+ SGG ++R+++A +L+ + + +
Sbjct: 131 AMDFINKMDNGL-DTIIGENGVLLSGGQRQRIAIARALLRDSPILI 175
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.3 bits (182), Expect = 2e-15
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVC 710
+ + + +LGP GAGK+ F+ ++ GI + G + G DI T + +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFV 75
Query: 711 PQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770
PQ+ L+ L+ ++ + R N++ + V E + + + D++ + SGG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLG--IAHLLDRKPARLSGGE 131
Query: 771 KRRLSVAI 778
++R+++A
Sbjct: 132 RQRVALAR 139
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 9/79 (11%), Positives = 24/79 (30%)
Query: 662 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 721
+ G G GKTT + ++ + + + + R + + ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 722 GREHLLFYGRLKNLKGPAL 740
L N++
Sbjct: 64 FTSKKLVGSYGVNVQYFEE 82
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 800 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.96 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.87 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.79 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.47 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.39 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.91 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.65 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.47 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.42 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.32 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.2 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.12 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.08 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.03 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.9 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.42 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.23 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.14 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.07 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.98 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.96 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.84 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.78 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.78 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.7 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.61 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.6 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.48 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.34 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.12 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.97 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.93 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.68 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.5 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.4 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.27 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.07 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.05 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.01 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.99 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.9 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.89 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.89 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.84 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.41 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.38 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.36 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.28 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.27 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.2 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.9 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.87 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.84 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.57 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.54 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.54 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.51 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.45 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.42 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.36 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.34 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.25 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.2 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.09 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.09 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.91 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.56 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.4 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.3 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.23 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.2 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.89 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.83 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.79 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.78 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.75 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.69 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.68 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.65 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.42 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.4 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.3 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.17 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 88.0 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.9 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 87.82 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.8 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.78 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.71 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.66 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.66 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.57 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.44 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 87.41 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.39 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.24 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.2 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.13 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.01 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.79 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.77 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.69 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.38 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.34 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.32 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.21 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.15 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.11 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.06 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.97 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.81 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.78 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.67 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.16 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 84.03 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.9 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.59 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.46 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.1 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 83.08 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 82.98 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.81 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.78 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.52 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.39 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.32 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.0 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.95 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.7 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.62 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.39 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.98 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.84 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.49 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 80.06 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.3e-43 Score=282.89 Aligned_cols=156 Identities=26% Similarity=0.403 Sum_probs=147.0
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
.|.++||+|.|+ ++.|++++||+|++||++||+|||||||||+++||+|+++|++|+|+++|.++.... ..++
T Consensus 6 ~I~v~nlsk~yg------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r 78 (239)
T d1v43a3 6 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 78 (239)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred EEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-CCCC
T ss_conf 499987999999------999981306788799899999999982999999997589998787999164135477-0001
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+||+||++.|++.+|++|++.+..++++.++++..+.++++++.++|. +++++++.+||||||||+++|+||+.+|+
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 5899800335342220999999999873999999999999999875985--56609954699999889999766404998
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
|++||
T Consensus 157 iLllD 161 (239)
T d1v43a3 157 VLLMD 161 (239)
T ss_dssp EEEEE
T ss_pred CEEEC
T ss_conf 24306
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.1e-43 Score=281.93 Aligned_cols=157 Identities=27% Similarity=0.452 Sum_probs=150.5
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
+|+++||+|.|++ +.|++|+||++++||++||+|||||||||++++|+|+++|++|++.++|.++.....+.++
T Consensus 2 aI~v~nl~k~yg~------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 75 (238)
T d1vpla_ 2 AVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 75 (238)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CEEEEEEEEEECC------EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHH
T ss_conf 7899958999999------9998062568848979999999999999999999669887888799986724468398872
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+|||||.+.+++.+|+.|++.+++.+++.++++..+.++++++.+++. ...++++++||||||||+++|+||+++|+
T Consensus 76 ~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred HEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 1867500154687866778889899861799899999999999867978--88850453379989899999999865999
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 154 illLD 158 (238)
T d1vpla_ 154 LAILD 158 (238)
T ss_dssp EEEEE
T ss_pred EEEEC
T ss_conf 88733
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-42 Score=279.70 Aligned_cols=157 Identities=23% Similarity=0.387 Sum_probs=146.3
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHH----
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676588----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD---- 701 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~---- 701 (800)
.|.++|++|.|+ ++.|++++||++++||++||+|||||||||++++|+|+++|++|+++++|.++.....
T Consensus 3 ~i~v~nl~k~yg------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 189986999989------99998560668869989999999998099999999648788989899999980356644424
Q ss_pred -HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -8622438864888889999999999998560499915699999999998499987612366898896699999999999
Q 003716 702 -RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 -~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiAL 780 (800)
..++.+||+||++.|++.+|++|++.+..++++.+..+.++.++++++.++|. +..++++.+||||||||+++|+||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~--~~~~~~p~~LSGGqkQRv~IAraL 154 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 532255120022122231011667633068772999899999999999875996--676299334999999999999998
Q ss_pred CCCCCEEEEC
Q ss_conf 0899579982
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~VvlLD 790 (800)
+.+|+|++||
T Consensus 155 ~~~P~iLllD 164 (240)
T d1g2912 155 VRKPQVFLMD 164 (240)
T ss_dssp HTCCSEEEEE
T ss_pred HCCCCEEEEC
T ss_conf 2699889825
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-43 Score=283.03 Aligned_cols=155 Identities=25% Similarity=0.411 Sum_probs=145.6
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCC
Q ss_conf 99994899919988898630133227877199599998699993889999983999899216999786367658886224
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~ 706 (800)
|.++|++|.|+ ++.|++++||++++||++||+|||||||||+++||+|+++|++|+++++|.++... ...++.
T Consensus 1 Iev~nv~k~yg------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~-~~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT-PPAERG 73 (232)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS-CGGGTC
T ss_pred CEEEEEEEEEC------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCC-CHHHCE
T ss_conf 99999999989------99998111778869989999989998299999999658788888899999977888-644432
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 38864888889999999999998560499915699999999998499987612366898896699999999999089957
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~V 786 (800)
+||+||++.|++.+|++|++.+..+++|.++++..+.++++++.++|. ++.++++.+||||||||+++|+||+.+|++
T Consensus 74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp EEEECSSCCC---------------------CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHHCCHHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 223433420264333788978999875998899999999999757886--566489656999999999999997039988
Q ss_pred EEEC
Q ss_conf 9982
Q 003716 787 RLSL 790 (800)
Q Consensus 787 vlLD 790 (800)
++||
T Consensus 152 lllD 155 (232)
T d2awna2 152 FLLD 155 (232)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 9975
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-41 Score=273.18 Aligned_cols=160 Identities=29% Similarity=0.412 Sum_probs=147.7
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC----CHHH
Q ss_conf 999948999199888986301332278771995999986999938899999839998992169997863676----5888
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMDR 702 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~----~~~~ 702 (800)
|.++||+|.|+.. .....||+|+||++++||++||+|||||||||+++||.|+.+|++|++.++|.++.. ++.+
T Consensus 2 i~v~nlsk~y~~~--~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQG--TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECS--SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCC--CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 7998279996999--81489861505788699799998999898889999875886366773288676852087555115
Q ss_pred HHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 62243886488888999999999999856049991569999999999849998761236689889669999999999908
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig 782 (800)
.|+.+||+||+..|++.+|++|++.+..+++|.++++..+.++++++.++|.+ +.++.+.+||||||||+++|+||+.
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~--~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD--KHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT--TTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH--HHHCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 54166430225222799649999999999849998999999999999769903--5548943499999989998640105
Q ss_pred CCCEEEEC
Q ss_conf 99579982
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~VvlLD 790 (800)
+|++++||
T Consensus 158 ~P~lLllD 165 (240)
T d3dhwc1 158 NPKVLLCD 165 (240)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEC
T ss_conf 89868744
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-41 Score=273.84 Aligned_cols=159 Identities=26% Similarity=0.448 Sum_probs=147.0
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC----HH
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765----88
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~----~~ 701 (800)
.|.++|++|.|+. +++.|++|+||+|++||++||+|||||||||+++||+|+++|++|+++++|.++... ..
T Consensus 3 ~i~v~nlsk~y~~----g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECC----CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 8999757999889----998998040789879989999989998099999999758688874599999995137311153
Q ss_pred HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 86224388648888899999999999985604999156999999999984999876123668988966999999999990
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALi 781 (800)
..++.+||+||+..|++.+|++|++.+..+.++.++++.++.++++++.++|. ++.|+.+.+||||||||+++|+||+
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH--HHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 12045147730433466665777766556761379999999999998665917--6664895459999985899875776
Q ss_pred CCCCEEEEC
Q ss_conf 899579982
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~VvlLD 790 (800)
.+|++++||
T Consensus 157 ~~P~llllD 165 (242)
T d1oxxk2 157 KDPSLLLLD 165 (242)
T ss_dssp TCCSEEEEE
T ss_pred HCCCCEEEC
T ss_conf 046614544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.9e-41 Score=269.57 Aligned_cols=151 Identities=28% Similarity=0.487 Sum_probs=139.2
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCC
Q ss_conf 99994899919988898630133227877199599998699993889999983999899216999786367658886224
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~ 706 (800)
|.++||+|.|+. .|++++||+|++||++||+|||||||||+++||+|+++|++|+++++|.++.. ....++.
T Consensus 2 i~v~nlsk~y~~-------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~-~~~~~r~ 73 (229)
T d3d31a2 2 IEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHD 73 (229)
T ss_dssp EEEEEEEEECSS-------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT-SCHHHHT
T ss_pred EEEEEEEEEECC-------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CCHHHHC
T ss_conf 899989999499-------78843378987998999998999829999999964768887889995673465-2165740
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 38864888889999999999998560499915699999999998499987612366898896699999999999089957
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~V 786 (800)
+||+||+..|++.+|++|++.+..++++.+. .+.+++.++.+++.+ ..|+++.+||||||||+++|+||+.+|++
T Consensus 74 ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~--~~~~~~~~LSGG~~QRvaiAraL~~~P~i 148 (229)
T d3d31a2 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEH--LLDRNPLTLSGGEQQRVALARALVTNPKI 148 (229)
T ss_dssp CEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTT--TTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHCCCCH---HHHHHHHHHHHCCHH--HHHCCHHHCCHHHHCCHHHHHHHHCCCCC
T ss_conf 5615121111746657788888776405538---999999999825655--57589554799984014030434436771
Q ss_pred EEEC
Q ss_conf 9982
Q 003716 787 RLSL 790 (800)
Q Consensus 787 vlLD 790 (800)
++||
T Consensus 149 LllD 152 (229)
T d3d31a2 149 LLLD 152 (229)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 4434
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-39 Score=260.00 Aligned_cols=161 Identities=25% Similarity=0.406 Sum_probs=140.8
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-C---HHH
Q ss_conf 999948999199888986301332278771995999986999938899999839998992169997863676-5---888
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-D---MDR 702 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~---~~~ 702 (800)
|.++|++|.|+.. +....|++|+||++++||++||+|||||||||+++||+|+++|++|+|+++|.++.. + ..+
T Consensus 2 I~i~nlsk~y~~~--~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG--EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCC--CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 8999079994899--82089871337788499799998899998216557506887777662699999857688555123
Q ss_pred H-HCCEEEECCCCCCCCCCCHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6-224388648888899999999999985604---999156999999999984999876123668988966999999999
Q 003716 703 I-YTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~-~~~iGycPQ~d~L~~~LT~~EhL~~ya~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAi 778 (800)
. ++.+||++|+..|++.+|++|++.+...++ +.+..+..+.+.+.++.++|.+ ..+++.+.+||||||||+++|+
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHH-HHHCCCHHHCCHHHHHHHHHHH
T ss_conf 125557788041241768668887757888722478999999999999887624234-5534880238999999999875
Q ss_pred HHCCCCCEEEEC
Q ss_conf 990899579982
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~VvlLD 790 (800)
||+.+|++++||
T Consensus 159 aL~~~P~lLllD 170 (230)
T d1l2ta_ 159 ALANNPPIILAD 170 (230)
T ss_dssp HHTTCCSEEEEE
T ss_pred HHHCCCCEEEEC
T ss_conf 652278889946
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.6e-39 Score=259.30 Aligned_cols=158 Identities=23% Similarity=0.374 Sum_probs=136.9
Q ss_pred CCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHH--
Q ss_conf 770999948999199888986301332278771995999986999938899999839998992169997863676588--
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-- 701 (800)
Q Consensus 624 ~~~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~-- 701 (800)
+..+.++||+|.|++ +.|++|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.....
T Consensus 4 d~~Lev~~l~k~yg~------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp SEEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred CEEEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf 607999618999899------88883025788899799999999985999999996788888038984244344660888
Q ss_pred HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86224388648888899999999999985604999156999999999984-99987612366898896699999999999
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l-~L~~~~~~d~~~~~lSGG~KRrLSiAiAL 780 (800)
..+..++|+||...+++.||++||+.+.+..+ .......+.+++.++.+ ++. +..++.+++||||||||+++|+||
T Consensus 78 ~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCHH--HHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 88742355676554577636999999888732-788899999999998741768--887585433899999999999999
Q ss_pred CCCCCEEEEC
Q ss_conf 0899579982
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~VvlLD 790 (800)
+.+|++++||
T Consensus 155 ~~~P~lLllD 164 (240)
T d1ji0a_ 155 MSRPKLLMMD 164 (240)
T ss_dssp TTCCSEEEEE
T ss_pred HHCCCEEEEC
T ss_conf 8299874003
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.6e-39 Score=255.79 Aligned_cols=158 Identities=24% Similarity=0.347 Sum_probs=142.4
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-------
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676-------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~------- 698 (800)
.|.++||+|.|++ +.|++++||++++||++||+|||||||||++++|+|+++|++|+|+++|.++..
T Consensus 2 ~Lev~nl~k~yg~------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899------9988150668869979999989998299999999747667899779999993367752000
Q ss_pred -------CHHHHHCCEEEECCCCCCCCCCCHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf -------5888622438864888889999999999998-56049991569999999999849998761236689889669
Q 003716 699 -------DMDRIYTSMGVCPQEDLLWETLTGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 699 -------~~~~~~~~iGycPQ~d~L~~~LT~~EhL~~y-a~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~ 770 (800)
.....++.+||+||+..+++.+|+.|++.+. .+.++.+..+..+.+.+.++.+++.+ ...++.+.+|||||
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQ 154 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHH
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-HHHCCCCCCCCHHH
T ss_conf 02351767999745448998332314110102136565787629998999999999999829952-44306822056778
Q ss_pred HHHHHHHHHHCCCCCEEEEC
Q ss_conf 99999999990899579982
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KRrLSiAiALig~P~VvlLD 790 (800)
|||+++|+||+.+|++++||
T Consensus 155 ~QRv~iAraL~~~P~llilD 174 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFD 174 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEC
T ss_conf 88989999984399878852
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-38 Score=253.53 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=137.6
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHH-H
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676-5888-6
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR-I 703 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~-~ 703 (800)
.+.++||+|.|++ +.|++|+||++++||++||+|||||||||++++|+|+++|++|+++++|.++.. ...+ .
T Consensus 4 iL~v~nlsk~yg~------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799------6887121799889979999999998499999999779768873799999966405699999
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 224388648888899999999999985604-------------9991569999999999849998761236689889669
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-------------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 704 ~~~iGycPQ~d~L~~~LT~~EhL~~ya~lk-------------g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~ 770 (800)
+..+||+||...+++.+|++||+.+....+ ....++..+.+.+.++.+++.+ ..++++++|||||
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~ 155 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH--LYDRKAGELSGGQ 155 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG--GTTSBGGGSCHHH
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH--HCCCCHHHCCCHH
T ss_conf 83387257764247887423214301333034504566542135328999999999987619630--2059535699188
Q ss_pred HHHHHHHHHHCCCCCEEEEC
Q ss_conf 99999999990899579982
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KRrLSiAiALig~P~VvlLD 790 (800)
|||+.+|+||+.+|++++||
T Consensus 156 ~Qrv~iAraL~~~P~llilD 175 (254)
T d1g6ha_ 156 MKLVEIGRALMTNPKMIVMD 175 (254)
T ss_dssp HHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHHHHCCCCHHHC
T ss_conf 88999999997592723243
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.9e-37 Score=246.57 Aligned_cols=149 Identities=22% Similarity=0.414 Sum_probs=132.2
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCC
Q ss_conf 99994899919988898630133227877199599998699993889999983999899216999786367658886224
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~ 706 (800)
+.+ +..|.|+. .. + |+||++. +|++||+|||||||||++++|+|+++|++|+++++|.++.. ....++.
T Consensus 3 l~v-~~~k~~g~------~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~-~~~~~r~ 71 (240)
T d2onka1 3 LKV-RAEKRLGN------FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-LPPERRG 71 (240)
T ss_dssp EEE-EEEEEETT------EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT-SCTTTSC
T ss_pred EEE-EEEEEECC------EE-E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC-CCHHHCC
T ss_conf 999-99999899------99-9-9999749-97999997999809999999973999896289999999886-9989928
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 38864888889999999999998560499915699999999998499987612366898896699999999999089957
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~V 786 (800)
+||+||++.|++.+|++|++.+. +++.++.+.++.++++++.++|. ++.++.+.+||||||||+++|+||+.+|++
T Consensus 72 ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~--~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 72 IGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred CEEECCCHHHCCCCHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCH--HHHHCCHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 52252314435220155766653--23367788999999999863837--566579444899998999998777516770
Q ss_pred EEEC
Q ss_conf 9982
Q 003716 787 RLSL 790 (800)
Q Consensus 787 vlLD 790 (800)
++||
T Consensus 148 lllD 151 (240)
T d2onka1 148 LLLD 151 (240)
T ss_dssp BEEE
T ss_pred EEEC
T ss_conf 6752
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.1e-35 Score=231.04 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=133.9
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
-+.++||++.|. +.+++++||++++||++||+|||||||||++++|+|+++|++|++.++|.++. +.+.
T Consensus 2 ~lev~~ls~~y~-------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~ 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKG 70 (200)
T ss_dssp EEEEEEEEEESS-------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGG
T ss_pred EEEEEEEEEEEC-------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH----HHCC
T ss_conf 599998999939-------92884208898599899999999971999999996620567788999989626----7367
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.++|+||...+.+.+|++|++.+.+.+++.+.. .+++.+.++.+++.+ .++++++||||||||+++|+|++.+|+
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~---~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCC---TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 089995013578882899999999975488637--999999998748856---301268689718888999998864998
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 146 llllD 150 (200)
T d1sgwa_ 146 IYVLD 150 (200)
T ss_dssp EEEEE
T ss_pred EEEEC
T ss_conf 99986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-34 Score=227.70 Aligned_cols=161 Identities=21% Similarity=0.354 Sum_probs=128.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHH
Q ss_conf 70999948999199888986301332278771995999986999938899999839998992169997863676-58886
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~ 703 (800)
..|.++|+++.|+++ +++.+++++||++++||++|++|||||||||++++|+|+++|++|+++++|.++.. +....
T Consensus 10 g~I~~~nvsf~Y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCEEEEEEEECCTTS---TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CEEEEEEEEEECCCC---CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 369999989988999---99976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2243886488888999999999999856049991569999-----99999984999876123668988966999999999
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 704 ~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~-----v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAi 778 (800)
++.+||+||++.+|+. |++|++.+....+ .......+. ..+.++.+........+....+||||||||+++|+
T Consensus 87 r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HHHEEEECSSCCCCSS-BHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCC-CHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEE
T ss_conf 8776540456500276-3465545421013-0278899999999899999856121113675167668954704899860
Q ss_pred HHCCCCCEEEEC
Q ss_conf 990899579982
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~VvlLD 790 (800)
||+.+|+|++||
T Consensus 165 al~~~p~ililD 176 (251)
T d1jj7a_ 165 ALIRKPCVLILD 176 (251)
T ss_dssp HHTTCCSEEEEE
T ss_pred CCCCCCCEEEEC
T ss_conf 445687078716
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-34 Score=225.86 Aligned_cols=153 Identities=22% Similarity=0.401 Sum_probs=124.9
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHC
Q ss_conf 999948999199888986301332278771995999986999938899999839998992169997863676-5888622
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~~~ 705 (800)
|.++|+++.|++. .+.+++++||++++||+.|++|+|||||||++++|+|+++|++|+|.|+|.++.. +.+..|+
T Consensus 2 I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77 (241)
T ss_dssp EEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEEEEEECCC----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHC
T ss_conf 2999999990899----960374248998499999999999998999999997357888889999999944002465535
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC------CC---CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 438864888889999999999998560499915699999999998499------98---761236689889669999999
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNL------FH---GGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L------~~---~~~~d~~~~~lSGG~KRrLSi 776 (800)
.+||+||++.+++. |++|++.+... ....++ +.+.++..++ .. ....+.....||||||||+++
T Consensus 78 ~i~~v~Q~~~lf~~-Ti~eNi~~~~~--~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRval 150 (241)
T d2pmka1 78 QVGVVLQDNVLLNR-SIIDNISLANP--GMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150 (241)
T ss_dssp HEEEECSSCCCTTS-BHHHHHCTTST--TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHH
T ss_pred EEEEEECCCCCCCC-CCCCCCCCCCC--CCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 28898244655784-00035223575--543888----999999975578887632013443278788669889898754
Q ss_pred HHHHCCCCCEEEEC
Q ss_conf 99990899579982
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 AiALig~P~VvlLD 790 (800)
|+||+.+|+|++||
T Consensus 151 ARal~~~p~ililD 164 (241)
T d2pmka1 151 ARALVNNPKILIFD 164 (241)
T ss_dssp HHHHTTCCSEEEEC
T ss_pred HHHHHCCCCHHHHH
T ss_conf 43444165135564
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-34 Score=230.74 Aligned_cols=153 Identities=20% Similarity=0.319 Sum_probs=123.0
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHC
Q ss_conf 999948999199888986301332278771995999986999938899999839998992169997863676-5888622
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~~~ 705 (800)
+.++|+++.|++ .+.+++|+||++++||++|++|||||||||++++|+|+++|++|++.++|.++.. +..+.|+
T Consensus 2 le~knvsf~Y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCC-----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 799988998799-----984142258998599999999999997999999999960989877988998844246788874
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----C----CCCCCCCCCCHHHHHHHHH
Q ss_conf 438864888889999999999998560499915699999999998499987-----6----1236689889669999999
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----G----VADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~-----~----~~d~~~~~lSGG~KRrLSi 776 (800)
.+||+||++.+|+. |++|++.+... .... .+.+.+.++..++.+. . .......+||||||||+++
T Consensus 77 ~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~i 150 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAG-TIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (242)
T ss_dssp TCCEECCSSCCCCE-EHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred HEEEECCCCCCCCC-CHHHHEECCCC-CCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 36797566545785-34543012445-5542----356778999997555420374210152368789879999999999
Q ss_pred HHHHCCCCCEEEEC
Q ss_conf 99990899579982
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 AiALig~P~VvlLD 790 (800)
|+||+.+|+|++||
T Consensus 151 ARal~~~p~ililD 164 (242)
T d1mv5a_ 151 ARAFLRNPKILMLD 164 (242)
T ss_dssp HHHHHHCCSEEEEE
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99985299899965
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-33 Score=222.13 Aligned_cols=157 Identities=20% Similarity=0.407 Sum_probs=129.5
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHH
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676-588862
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~~ 704 (800)
.|.++|+++.|+++ .+.+++++||.|++||++||+|||||||||++++|+|+++|++|+++++|.++.. +....+
T Consensus 13 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 79999889992999----97635332899859999999999998599999998621688846898788012111066542
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2438864888889999999999998560499915699999-----9999984--99987612366898896699999999
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV-----EESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 705 ~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v-----~~~L~~l--~L~~~~~~d~~~~~lSGG~KRrLSiA 777 (800)
+.+||+||.+.+++. |+++++.+ ++......+++.++. .+.++.+ ++. ...+....+||||||||+++|
T Consensus 89 ~~i~~v~Q~~~l~~~-ti~~n~~~-~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~--t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 89 NQVALVSQNVHLFND-TVANNIAY-ARTEEYSREQIEEAARMAYAMDFINKMDNGLD--TIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHT-TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGG--SBCCTTSCSSCHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCC-CHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH--HHHCCCCCCCCHHHHHHHHHH
T ss_conf 068799502544786-20243320-57220899999999999817999973554410--143488898499999999999
Q ss_pred HHHCCCCCEEEEC
Q ss_conf 9990899579982
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 iALig~P~VvlLD 790 (800)
+||+.+|+|++||
T Consensus 165 Ral~~~p~ililD 177 (253)
T d3b60a1 165 RALLRDSPILILD 177 (253)
T ss_dssp HHHHHCCSEEEEE
T ss_pred HHHHCCCCEEEEC
T ss_conf 9995499889951
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-33 Score=223.63 Aligned_cols=154 Identities=26% Similarity=0.419 Sum_probs=127.8
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHH
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676-588862
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~~ 704 (800)
.|.++|+++.|++. .+.+++++||.|++||+++++|+|||||||++++|+|+++|++|++.++|.+++. +.+..|
T Consensus 16 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 79999889995999----97606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC---------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 243886488888999999999999856049991569999999999849998---------76123668988966999999
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~lSGG~KRrLS 775 (800)
+.+||+||++.+++. |++|++.+. +- ... .+.+.+.++..++.+ .........+||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~-Ti~eNi~~g-~~-~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~ 164 (255)
T d2hyda1 92 NQIGLVQQDNILFSD-TVKENILLG-RP-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 164 (255)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGG-CS-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred HEEEEEECCCCCCCC-CHHHHHHCC-CC-CCC----HHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 414565101568998-799998515-86-799----99999999996979999736242010333888984999999999
Q ss_pred HHHHHCCCCCEEEEC
Q ss_conf 999990899579982
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iAiALig~P~VvlLD 790 (800)
+|+||+.+|+|++||
T Consensus 165 iARal~~~p~ililD 179 (255)
T d2hyda1 165 IARIFLNNPPILILD 179 (255)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 999985599899983
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.2e-30 Score=200.55 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=123.9
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHH
Q ss_conf 0999948999199888986301332278771995999986999938899999839998992169997863676-588862
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~-~~~~~~ 704 (800)
.+.++|+.+.| +++++||+|++||++||+|||||||||++++|+|+. |++|++.++|.++.. ...+.+
T Consensus 3 il~~~dv~~~~----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~ 71 (231)
T d1l7vc_ 3 VMQLQDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71 (231)
T ss_dssp EEEEEEECCTT----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHH
T ss_pred EEEEECCCCCC----------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHH
T ss_conf 99998741571----------555888899489899999899980999999994887-9955999999999869989998
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 243886488888999999999999856049991569999999999849998761236689889669999999999908--
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-- 782 (800)
Q Consensus 705 ~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig-- 782 (800)
...+|.+|........++++.+.++..- ....+.+++.++.+++. ++.++++.+||||||||+.+|+|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~--~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 72 LHRAYLSQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp HHEEEECSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCT--TTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHCEEEECCCCCCCCCCHHHHHHHCCCH-----HHHHHHHHHHHHHCCCH--HHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 6402451213577442098876410014-----66899999999865987--6767684456998899999999998517
Q ss_pred -----CCCEEEEC
Q ss_conf -----99579982
Q 003716 783 -----NPKVRLSL 790 (800)
Q Consensus 783 -----~P~VvlLD 790 (800)
+|+|++||
T Consensus 145 p~~~p~p~llllD 157 (231)
T d1l7vc_ 145 PQANPAGQLLLLD 157 (231)
T ss_dssp TTTCTTCCEEEES
T ss_pred CCCCCCCCEEEEC
T ss_conf 1338998899971
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.3e-30 Score=201.92 Aligned_cols=130 Identities=19% Similarity=0.335 Sum_probs=101.4
Q ss_pred CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHH
Q ss_conf 30133227877199599998699993889999983999899216999786367658886224388648888899999999
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~E 724 (800)
+++++|+||+|++||++||+|||||||||++++|+|+++|++|++.++| +++|+||+..+++. |++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC------------EEEEEECCCCCCCC-EEEC
T ss_conf 7677375999859999999989998299999999579747882899999------------99998164302676-0321
Q ss_pred HHHHHHHHCCCCCHHHHHHHHH---HHHHCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9999856049991569999999---999849998--76123668988966999999999990899579982
Q 003716 725 HLLFYGRLKNLKGPALTQAVEE---SLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 hL~~ya~lkg~~~~~~~~~v~~---~L~~l~L~~--~~~~d~~~~~lSGG~KRrLSiAiALig~P~VvlLD 790 (800)
++.+... .........++. ......+.+ ....++...+||||||||+++|+||+.+|+|++||
T Consensus 116 ni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 116 NIIFGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHTTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 4203334---5605799999997769999846123323555542377999999999999998696351333
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.80 E-value=8.3e-11 Score=81.88 Aligned_cols=99 Identities=10% Similarity=-0.084 Sum_probs=63.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCC-----CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99986999938899999839998992169997863676588862243886488-----8889999999999998560499
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-----DLLWETLTGREHLLFYGRLKNL 735 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~-----d~L~~~LT~~EhL~~ya~lkg~ 735 (800)
++|.||||+||||++++++|+++++.|.+++.+.+..... ...++..+. ..+... +..+ ..+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSK-FFTS----KKLV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEET-TCCC----SSEE---
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHH----HHHH---
T ss_conf 9999899938999999998148888646998771328888----76531123366777887541-1345----5443---
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9156999999999984999876123668988966999999999990899579982
Q 003716 736 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 736 ~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~VvlLD 790 (800)
. ....+.....+++|++++..++.++..+|+++++|
T Consensus 71 ------------------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllD 106 (178)
T d1ye8a1 71 ------------------G-SYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106 (178)
T ss_dssp ------------------T-TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred ------------------H-HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf ------------------0-23037625665320137899999974099742302
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.00046 Score=39.92 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9959999869999388999998399989921699
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~ 690 (800)
+|++..++|++|+||||+++.|.|....-.|++.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.79 E-value=0.00041 Score=40.20 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 6036876432105888
Q 003716 170 PSDVMASLADNVLGSD 185 (800)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (800)
.|..+.+++ +++|..
T Consensus 37 KS~iL~Ai~-~~lg~~ 51 (308)
T d1e69a_ 37 KSNIIDAIK-WVFGEQ 51 (308)
T ss_dssp STHHHHHHH-HTSCC-
T ss_pred HHHHHHHHH-HHHCCC
T ss_conf 899999999-984778
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.00075 Score=38.57 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 6036876432105888
Q 003716 170 PSDVMASLADNVLGSD 185 (800)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (800)
.|..+++++ +|||..
T Consensus 38 KS~ileAi~-~~lg~~ 52 (427)
T d1w1wa_ 38 KSNMMDAIS-FVLGVR 52 (427)
T ss_dssp HHHHHHHHH-HHTTC-
T ss_pred HHHHHHHHH-HHHCCC
T ss_conf 899999999-985778
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.47 E-value=0.00098 Score=37.86 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999986999938899999839998
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 658 Gei~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
|.++.|.||+||||||+.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.00034 Score=40.73 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99599998699993889999983999899216999
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I 691 (800)
+|.+..++|++|+||||+++.|.|......|++.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=5.3e-05 Score=45.74 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 133227877199599998699993889999983
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 647 av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLt 679 (800)
.+++.++.+.+| ++.|.|+|||||||++..|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.20 E-value=0.0014 Score=36.86 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=37.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 19959999869999388999998399989921699978636765888622438864888889999999999998560499
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 735 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~ 735 (800)
+++.++.|+||+|+|||||+-=|+....- . .++++..--+ . ...-+.|.|..|+++-|+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~-----------------g~kV~lit~D-t--~R~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-L-----------------GKKVMFCAGD-T--FRAAGGTQLSEWGKRLSI 62 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-T-----------------TCCEEEECCC-C--SSTTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-C-----------------CCCEEEEEEC-C--CCCCCHHHHHHCCCCCCC
T ss_conf 99779999899999889999999999997-7-----------------9907999813-6--665402667640545682
Q ss_pred C
Q ss_conf 9
Q 003716 736 K 736 (800)
Q Consensus 736 ~ 736 (800)
+
T Consensus 63 ~ 63 (207)
T d1okkd2 63 P 63 (207)
T ss_dssp C
T ss_pred E
T ss_conf 3
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.00086 Score=38.21 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999388999998399989
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRT 684 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~p 684 (800)
++++.|++||||||+++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0016 Score=36.48 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1995999986999938899999839
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG 680 (800)
.+-.++.|+||+|+||||++-=|+-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999988999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0037 Score=34.27 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9959999869999388999998399
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~ 681 (800)
+|.++.|.||+|+||||+++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0021 Score=35.77 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999986999938899999839998
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 658 Gei~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
-.++.|+||+|+||||++-=|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.0083 Score=32.07 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=26.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCEEC
Q ss_conf 999986999938899999839998------------9921699978636
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDI 696 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~------------ptsG~v~I~G~~i 696 (800)
-.|++|+.|+||||+++.|+|... ...|...++|.++
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 58 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 58 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEE
T ss_conf 8999999999999999999778762242256543332001220499234
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.47 E-value=0.0022 Score=35.71 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEE
Q ss_conf 599998699993889999983999899---2169997863
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLD 695 (800)
Q Consensus 659 ei~gLLG~NGAGKTTll~mLtG~~~pt---sG~v~I~G~~ 695 (800)
.++|+.|.+||||||+++-|...+... -|.+.-++++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 0999980999989999999999998679837999831676
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0055 Score=33.18 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199599998699993889999983999
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..+.++.|.|+.||||||+-+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.32 E-value=0.0058 Score=33.05 Aligned_cols=11 Identities=55% Similarity=0.918 Sum_probs=3.3
Q ss_pred CCCCCCHHHHH
Q ss_conf 69999388999
Q 003716 665 GPNGAGKTTFI 675 (800)
Q Consensus 665 G~NGAGKTTll 675 (800)
||-||||||++
T Consensus 7 G~~GsGKTTLl 17 (244)
T d1yrba1 7 GTAGSGKTTLT 17 (244)
T ss_dssp CSTTSSHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 18998399999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.20 E-value=0.0052 Score=33.32 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..+|+|+-|+||||+++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.12 E-value=0.0076 Score=32.33 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99599998699993889999983999
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+..++.|+||+|+||||++-=|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98689998999998899999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.10 E-value=0.005 Score=33.45 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99599998699993889999983999899216999786367658886224388648888899999999999985604999
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~ 736 (800)
.-.+..|+||+|+||||++-=|+..+.-. .+++++.--+ ....-+.|.|..|+.+-|++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~------------------g~kV~lit~D---t~R~ga~eQL~~~a~~l~v~ 69 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKK------------------GFKVGLVGAD---VYRPAALEQLQQLGQQIGVP 69 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHT------------------TCCEEEEECC---CSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC------------------CCCEEEEEEE---CCCCCHHHHHHHHCCCCCCC
T ss_conf 99899998999999899999999999977------------------9936999720---23551567898740146842
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.015 Score=30.45 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=23.6
Q ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 133227877199599998699993889999983
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 647 av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLt 679 (800)
+-++++++ +.+.+.-|-|||.+||||++|.+.
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 64057988-995399995467313689999879
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0017 Score=36.40 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 99998699993889999983999899216999786
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~ 694 (800)
+..|.||+|+||||+++.+...+....+.+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99998899971999999999999977997999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.90 E-value=0.013 Score=30.93 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9959999869999388999998399989921699978
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
.|++..|.|+.||||||+-+.|...+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.42 E-value=0.021 Score=29.60 Aligned_cols=28 Identities=43% Similarity=0.581 Sum_probs=21.2
Q ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3227877199599998699993889999983
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 649 ~~lsl~i~~Gei~gLLG~NGAGKTTll~mLt 679 (800)
+++.++ +++.-|-|||.+||||++|.+.
T Consensus 29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 29 NDLEMA---HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEES---SCEEEEESCSSSSHHHHHHHHH
T ss_pred CEEEEC---CCEEEEECCCCCCCCHHHHHHH
T ss_conf 558847---8679997887345323455658
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.23 E-value=0.012 Score=31.00 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=34.1
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 2787719959999869999388999998399989921699978
Q 003716 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 651 lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
+...+..+.-..+.|+-|+||||+++.|.+..++..--+.|..
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd 201 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 201 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCC
T ss_conf 9999983788899940356625789998653014562331132
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.14 E-value=0.019 Score=29.84 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938899999839998
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
+.+++|+-|+||||+++-|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.07 E-value=0.021 Score=29.56 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 1995999986999938899999839998992169997
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 692 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~ 692 (800)
|+|-...|.|+.||||||+-+.|.-.+. |..++.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~---~~~~~~ 36 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD---GFQHLE 36 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST---TEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC---CCCEEE
T ss_conf 9988899982899988999999999858---990874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.01 E-value=0.013 Score=30.76 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938899999839998
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
-.+|+|..|+||||+++.+++...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.018 Score=30.02 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|+||+||||||+.+.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.96 E-value=0.022 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 5999986999938899999839998992169
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689 (800)
Q Consensus 659 ei~gLLG~NGAGKTTll~mLtG~~~ptsG~v 689 (800)
.+.++-|+.||||||+.+.|.-.+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.021 Score=29.54 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
.+++|.-|+||||+++.|+|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.024 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=16.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999869999388999998399
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 659 ei~gLLG~NGAGKTTll~mLtG~ 681 (800)
..+.|+||+|+||+|+++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.78 E-value=0.023 Score=29.31 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..+|+|+.|+||||+++.|+|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.78 E-value=0.025 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199599998699993889999983999
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.+|.+.-|.|+.||||||+-+.|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.74 E-value=0.013 Score=30.91 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
.||+|+-++||||+++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.70 E-value=0.03 Score=28.58 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9998699993889999983999899
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~pt 685 (800)
..++|+.|+||||+++.+.+....+
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~~~ 29 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDVDT 29 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCCSS
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 9999999989999999980899873
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.61 E-value=0.023 Score=29.34 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..|.||+|+||||+.+.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.026 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..+++|+.|+||||+++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.48 E-value=0.019 Score=29.81 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 999869999388999998-3999899216
Q 003716 661 FGMLGPNGAGKTTFISMM-IGITRTTSGT 688 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mL-tG~~~ptsG~ 688 (800)
..|||..|+||||+++-+ .+...||-|-
T Consensus 9 illlG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 99998999988999998950982788886
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.34 E-value=0.017 Score=30.09 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.||+|.-|+||||+++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.024 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.+.|+|+-||||||+++-|+|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.083 Score=25.86 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=3.8
Q ss_pred CCCCHHHHHHH
Q ss_conf 99915699999
Q 003716 734 NLKGPALTQAV 744 (800)
Q Consensus 734 g~~~~~~~~~v 744 (800)
|+..+++.+-|
T Consensus 231 gMs~eqv~~FV 241 (286)
T d1odfa_ 231 GMTDEQVHAFV 241 (286)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 99999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.12 E-value=0.04 Score=27.80 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999986999938899999839998
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 658 Gei~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
..+..|-|+.||||||+-+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.97 E-value=0.033 Score=28.33 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=4.8
Q ss_pred EEECCCCEEEEEC
Q ss_conf 8771995999986
Q 003716 653 LALPSGECFGMLG 665 (800)
Q Consensus 653 l~i~~Gei~gLLG 665 (800)
...+..+++.+-|
T Consensus 120 ~~~~~~~ivi~e~ 132 (198)
T d1rz3a_ 120 VYLSDSDMIMIEG 132 (198)
T ss_dssp EECTTCSEEEEEE
T ss_pred CCCCCCCCCCCCC
T ss_conf 0246644322224
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.93 E-value=0.035 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 59999869999388999998399989921699978636
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 659 ei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i 696 (800)
+++.+.|+.||||||+.+-|... ..|...+...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEECHHHH
T ss_conf 79999899999999999999995---799799603999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.038 Score=27.97 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC----CCCCC
Q ss_conf 9998699993889999983999----89921
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT----RTTSG 687 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~----~ptsG 687 (800)
.+|+|+.|+||||+++.+++.. .||.|
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~~~~~~t~~ 33 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWH 33 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEECEEE
T ss_conf 9999999999999999995899871502462
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.68 E-value=0.03 Score=28.64 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=8.0
Q ss_pred EECCCCEEEEECCCCCCHHHH
Q ss_conf 771995999986999938899
Q 003716 654 ALPSGECFGMLGPNGAGKTTF 674 (800)
Q Consensus 654 ~i~~Gei~gLLG~NGAGKTTl 674 (800)
++.+||++.+.|+.|+||||+
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~ 51 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTF 51 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHH
T ss_conf 978980899994799979999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.50 E-value=0.035 Score=28.19 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999388999998399
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~ 681 (800)
+.+++||-+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.047 Score=27.36 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=10.6
Q ss_pred EEEEEECCCCEEEEECCCCCCH
Q ss_conf 2278771995999986999938
Q 003716 650 GLSLALPSGECFGMLGPNGAGK 671 (800)
Q Consensus 650 ~lsl~i~~Gei~gLLG~NGAGK 671 (800)
.....+.+.++.-+.|.-....
T Consensus 103 ~~~~~~~~~~~iiveg~~~l~~ 124 (213)
T d1uj2a_ 103 EETVTVYPADVVLFEGILAFYS 124 (213)
T ss_dssp EEEEEECCCSEEEEECTTTTSS
T ss_pred CCEEEECCCCEEEECCHHHHCC
T ss_conf 7618953665477422344236
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.35 E-value=0.042 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|+|..|+||||+++.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999986999999985898
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.27 E-value=0.042 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.++.|+.|+||||+.+.|+..+
T Consensus 10 I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998999999999984
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.057 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999856049-99156999999999984999
Q 003716 719 TLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLF 754 (800)
Q Consensus 719 ~LT~~EhL~~ya~lkg-~~~~~~~~~v~~~L~~l~L~ 754 (800)
.+...||+.....+|. +..-...+..+.+++.++..
T Consensus 242 ~l~~~~~~~~~~~lRr~l~~~~~~~~~e~Li~~l~~t 278 (289)
T d1xpua3 242 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 278 (289)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTS
T ss_pred HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 0089999999999999998416299999999987037
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.054 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
-.+++|+-|+||||+++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.01 E-value=0.05 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938899999839998
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
+..+.|+.||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.99 E-value=0.039 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
-..++|+.|+||||+++.+++-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.96 E-value=0.043 Score=27.64 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+-|.||.|+||||+.+++...+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.11 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 99986999938899999839-----998992169
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v 689 (800)
..++|..|+||||+++-+.+ ...||.|..
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~ 38 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT 38 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 9999989979899999997099987637613310
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.89 E-value=0.059 Score=26.76 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999869999388999998399989921699978
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 659 ei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
.++.|.|+.|+||||+.+.|...+. +..++.|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.89 E-value=0.052 Score=27.11 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.+++|+-+||||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.84 E-value=0.058 Score=26.83 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8879999998999
Q 003716 369 TALVYEKQQKLRI 381 (800)
Q Consensus 369 ~~iV~EKe~klK~ 381 (800)
...+.+|...++.
T Consensus 255 ~~~i~~K~~~~~~ 267 (400)
T d1tq4a_ 255 DSVIEKKRQFLKQ 267 (400)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.085 Score=25.78 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 999986999938899999839998992169997863
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~ 695 (800)
.+-|.||.|+||||+.+.++....-+ -..++..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~ 87 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASD 87 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCCC
T ss_conf 49998799998889999999998751--20134432
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.41 E-value=0.059 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 71995999986999938899999839998992169997863
Q 003716 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 655 i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~ 695 (800)
+.++.++.|+||-||||||.-+.|+-.+ |-.+|+.-+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~ 41 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD 41 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH
T ss_conf 4678289998999998799999999986----984683347
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.40 E-value=0.066 Score=26.46 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999869999388999998399989
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRT 684 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~p 684 (800)
.+++|..|+||||+++-+++....
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~~ 31 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEVV 31 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999999998999999999679876
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.032 Score=28.40 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+.|+-|+.||||||+-+.|...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99996899998768999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.069 Score=26.35 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|.||.|+||||+-+.|.-.+
T Consensus 5 I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999996
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.09 Score=25.62 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 199599998699993889999983999899216999786367
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~ 697 (800)
++-++.-+.|+.||||||+.+-+... .|-+.|+.-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~~ 49 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTLG 49 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECHHHHH
T ss_conf 99989999899999899999999976----597897607777
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.20 E-value=0.071 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.317 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 999869999388999998399989921699978
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
..|.|+.||||||+-++|+..+ |-.+++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 9998999998899999999983----9987836
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.12 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEEE
Q ss_conf 99986999938899999839-----9989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v~ 690 (800)
..++|..|+||||+++-+++ ...||.|+..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99999999799999999973998854576645200
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.02 E-value=0.057 Score=26.88 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999938899999839998
Q 003716 661 FGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
..++|+.|+||||+++.+++...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999965988
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.90 E-value=0.077 Score=26.04 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|.|+.||||||+-+.|.-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.88 E-value=0.07 Score=26.32 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=43.4
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 87719959999869999388999998399-989921699978636765888622438864888889999999999998
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFY 729 (800)
Q Consensus 653 l~i~~Gei~gLLG~NGAGKTTll~mLtG~-~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL~~y 729 (800)
=+++.|.+.-+-||+|+||||+.-.+... .....--+||+...-- +.+. .+.+|.=+..-.....-+++|-+...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~-~~e~-a~~~GvD~d~il~~~~~~~E~~~~~~ 130 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL-DPDY-AKKLGVDTDSLLVSQPDTGEQALEIA 130 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC-CHHH-HHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHH-HHHHCCCHHHEEEECCCCHHHHHHHH
T ss_conf 9866633699964887488999999999875489889999897667-9999-99809988995896699899999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.87 E-value=0.069 Score=26.35 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 999869999388999998399989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ptsG~v~ 690 (800)
..|+|..|+||||+++.+.....||.|...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 999999998889999988408979724799
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.84 E-value=0.079 Score=26.00 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938899999839
Q 003716 660 CFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG 680 (800)
+.|+.|..||||||.-++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.82 E-value=0.084 Score=25.80 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++|+.|+||||+++.+++.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.11 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9959999869999388999998399989921699978
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
+-.+..|+||-||||||.-+.|+..+ |-.+|+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~ 39 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSA 39 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEH
T ss_conf 97289998999999899999999985----9908853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.54 E-value=0.047 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938899999839998
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
-.+|+|+-++||||+++.|+|.-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.54 E-value=0.11 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=23.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77199599998699993889999983999
Q 003716 654 ALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 654 ~i~~Gei~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|.++.|-|+=||||||+.|-+..-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 57998299996687765889999987642
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.053 Score=27.06 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99599998699993889999983999
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+|-+.-|.|+.||||||+-+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.45 E-value=0.075 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993889999983999
Q 003716 660 CFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+.++-|+-||||||+.+.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.45 E-value=0.096 Score=25.44 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|..|+||||+++.+++..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.42 E-value=0.1 Score=25.29 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9959999869999388999998399989921699978
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 657 ~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
+..++.++||-||||||+-+.|+-.+ |-.+++.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~~ 37 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEECH
T ss_conf 99489998999998899999999997----9926721
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=0.1 Score=25.35 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=40.0
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 8771995999986999938899999839-99899216999786367658886224388648888899999999999
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 653 l~i~~Gei~gLLG~NGAGKTTll~mLtG-~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL~ 727 (800)
=.+++|.++-+-|+.|+||||+.-.++. ...+..--+||+...-.. .+ ..+.+|+-+..-...+.-+++|-+.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~-~~-~a~~~Gvd~d~v~~~~~~~~E~~~~ 122 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI-YARKLGVDIDNLLCSQPDTGEQALE 122 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH-HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HH-HHHHHCCCHHHEEEECCCCHHHHHH
T ss_conf 99667358998057774789999999999870898799986544548-99-9998399879979962898999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.097 Score=25.43 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++|..|+||||+++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.29 E-value=0.087 Score=25.73 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 999869999388999998399989921699978
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
..|.|+.||||||+-+.|+-.+ |-.++++
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 8998899998899999999994----9987865
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.25 E-value=0.12 Score=24.81 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.|++||=+||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.20 E-value=0.092 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|..|+||||+++-+.+..
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996688
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.066 Score=26.48 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=6.0
Q ss_pred HCCCCHHHHHHH
Q ss_conf 041416799999
Q 003716 496 MELYPGFALYRG 507 (800)
Q Consensus 496 l~l~P~~~l~~g 507 (800)
+.+-|..++-|.
T Consensus 159 Ld~~pe~~~~Ri 170 (241)
T d1p5zb_ 159 LQATPETCLHRI 170 (241)
T ss_dssp EECCHHHHHHHH
T ss_pred ECCCHHHHHHHH
T ss_conf 145889999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.099 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCEE
Q ss_conf 999869999388999998399-----98992169
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~v 689 (800)
..++|..|+||||+++.+++. ..|+.|..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~ 39 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS 39 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 9999979989999999998098898657741001
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.91 E-value=0.12 Score=24.84 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999388999998399
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~ 681 (800)
++.|.|..|+||||+.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999999999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.56 E-value=0.12 Score=24.81 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCC
Q ss_conf 999869999388999998399-----989921
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSG 687 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG 687 (800)
..++|..|+||||+++.+.+. ..|+.|
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999198999999973988865145555
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.42 E-value=0.14 Score=24.37 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECCC
Q ss_conf 199599998699993889999983999899--2169997863676
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRT 698 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~~~pt--sG~v~I~G~~i~~ 698 (800)
.+|-+.=|.|..||||||+-+.|.-.+.-. .-.+.++|.+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.40 E-value=0.12 Score=24.91 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|..|+||||+++.+++..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.38 E-value=0.092 Score=25.57 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=12.5
Q ss_pred EECCCCEEEEECCCCCCHHHHH
Q ss_conf 7719959999869999388999
Q 003716 654 ALPSGECFGMLGPNGAGKTTFI 675 (800)
Q Consensus 654 ~i~~Gei~gLLG~NGAGKTTll 675 (800)
++++|+++-+.|+.|+||||+-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~ 53 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLA 53 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHH
T ss_conf 9558879999858989889999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.25 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 99986999938899999839-----998992169
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v 689 (800)
..++|..|+||||+++-+.+ ...||.|..
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~ 38 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 38 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECC
T ss_conf 9999989978999999997398987637731001
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.26 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
.+++|..|+||||+++-+.+
T Consensus 8 i~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999971
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.23 E-value=0.22 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHH-HHHCC----CCCCCCEEEEC
Q ss_conf 9998699993889999-98399----98992169997
Q 003716 661 FGMLGPNGAGKTTFIS-MMIGI----TRTTSGTAYVQ 692 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~-mLtG~----~~ptsG~v~I~ 692 (800)
..++|..|+||||+++ .+.|. ..||.|.....
T Consensus 5 ivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~ 41 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 41 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 9999999959899999997299998658720101122
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.17 Score=23.86 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEE-----EECCEEC
Q ss_conf 99986999938899999839-----998992169-----9978636
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTA-----YVQGLDI 696 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v-----~I~G~~i 696 (800)
..++|..|+||||+++.+++ ...||.|.. .++|..+
T Consensus 7 v~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 9999989929899999997198885447542113103883176798
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.13 E-value=0.13 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|+|+.|+||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.89 E-value=0.15 Score=24.23 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938899999839
Q 003716 660 CFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG 680 (800)
+.|+.|.-||||||..+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.83 E-value=0.13 Score=24.69 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999938899999839998
Q 003716 661 FGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
..++|+.|+||||+++.+.+...
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999964877
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.81 E-value=0.09 Score=25.63 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999938899999839998
Q 003716 661 FGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
..++|..|+||||+++.+.+...
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~~ 42 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGEV 42 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999988999988733877
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.79 E-value=0.07 Score=26.32 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q ss_conf 4349979999
Q 003716 306 VPRSINLASN 315 (800)
Q Consensus 306 ~p~~lN~i~n 315 (800)
+|.+++++.+
T Consensus 242 ~~~l~~~~~~ 251 (288)
T d1a7ja_ 242 FPYLTSMIHG 251 (288)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHHCC
T ss_conf 7999976366
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.16 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938899999839
Q 003716 660 CFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG 680 (800)
+.|+.|.-||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.27 Score=22.69 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCEE
Q ss_conf 999869999388999998399-----98992169
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~v 689 (800)
..++|..|+||||+++.+++. ..+|.|..
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~ 42 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 42 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCC----CCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9999999979999999998497887656632321
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.24 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCE
Q ss_conf 999869999388999998399-----9899216
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGT 688 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~ 688 (800)
..++|..|+||||+++-+.+. ..||.|.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~ 38 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA 38 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999991989999999729998654653010
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.74 E-value=0.24 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEEE
Q ss_conf 99986999938899999839-----9989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v~ 690 (800)
+.++|..|+||||+++-+.+ ...||.|.-+
T Consensus 7 i~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~ 41 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 99999899598999999970988854576312010
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.22 Score=23.24 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|..|+||||+++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.69 E-value=0.27 Score=22.65 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.6
Q ss_pred CHHHHHHHHH
Q ss_conf 6036876432
Q 003716 170 PSDVMASLAD 179 (800)
Q Consensus 170 ~~~~~~~~~~ 179 (800)
.|-++.+|+.
T Consensus 15 KSTlf~~lt~ 24 (278)
T d1jala1 15 KSTLFNALTK 24 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 8999999977
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.69 E-value=0.12 Score=24.89 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=4.8
Q ss_pred EECCCCCCHHHHHH
Q ss_conf 98699993889999
Q 003716 663 MLGPNGAGKTTFIS 676 (800)
Q Consensus 663 LLG~NGAGKTTll~ 676 (800)
+-||-|+|||||+.
T Consensus 163 vtGpTGSGKSTTl~ 176 (401)
T d1p9ra_ 163 VTGPTGSGKSTTLY 176 (401)
T ss_dssp EECSTTSCHHHHHH
T ss_pred EECCCCCCCCHHHH
T ss_conf 87678777447799
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.68 E-value=0.095 Score=25.48 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99986999938899999839998992
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~pts 686 (800)
..++|..|+||||+++.+.+...++.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~~~~ 40 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQSVTT 40 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999878999999844888874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.65 E-value=0.21 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCEEE
Q ss_conf 999869999388999998399-----989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~v~ 690 (800)
..++|..|+||||+++.+++. ..||.|...
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~ 39 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 99999899388999999971999887288224411
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=0.17 Score=23.93 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 771995999986999938899999839
Q 003716 654 ALPSGECFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 654 ~i~~Gei~gLLG~NGAGKTTll~mLtG 680 (800)
++++|++.-+.|+-|+||||+.--+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.15 Score=24.21 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
.-|-||.|.||||+.+.++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.42 E-value=0.15 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCC
Q ss_conf 999869999388999998399-----989921
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSG 687 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG 687 (800)
..++|.-|+||||+++.+++. ..||.|
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~ 40 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 40 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999098999999961988887288543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=0.12 Score=24.75 Aligned_cols=11 Identities=36% Similarity=0.253 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 99799999975
Q 003716 309 SINLASNAYLR 319 (800)
Q Consensus 309 ~lN~i~naiLk 319 (800)
.++++.|+...
T Consensus 54 alq~~~~~~~~ 64 (258)
T d1v5wa_ 54 SHTLCVTAQLP 64 (258)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHH
T ss_conf 99999999744
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.30 E-value=0.096 Score=25.45 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=41.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 771995999986999938899999839998-992169997863676588862243886488888999999999999
Q 003716 654 ALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 654 ~i~~Gei~gLLG~NGAGKTTll~mLtG~~~-ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL~~ 728 (800)
.++.|.++-+-|+.|+||||+.-.++.... +..--+||+...--+ . +..+.+|+=+..-...+.-+++|-+..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~-~-~~a~~~Gvd~d~i~~~~~~~~E~~~~~ 126 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-P-VYARALGVNTDELLVSQPDNGEQALEI 126 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-H-HHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-H-HHHHHHCCCCHHEEEECCCCHHHHHHH
T ss_conf 8667547898058765227999999999970799899998876589-9-999982898123799748999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=0.33 Score=22.13 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCEEEE
Q ss_conf 999869999388999998399-----9899216999
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTAYV 691 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~v~I 691 (800)
..++|..|+||||+++-+++. ..|+.|+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~ 41 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR 41 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 999998993999999999719998766886113553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.00 E-value=0.033 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
.+|+|.-|+||||+++.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.91 E-value=0.16 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|.||-||||||+-+.|.--+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.90 E-value=0.36 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEEE
Q ss_conf 99986999938899999839-----9989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v~ 690 (800)
..++|.-|+||||+++-+++ ...||.|..+
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~ 41 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999899588999999972999865477534310
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=87.82 E-value=0.23 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHHHHHCHHHCCCCHHHH
Q ss_conf 989998467099946899
Q 003716 377 QKLRIMMKMHGLGDGPYW 394 (800)
Q Consensus 377 ~klK~lm~i~GL~~~~YW 394 (800)
..++..|...|.+..--+
T Consensus 239 ~~l~~al~~lg~~~~e~~ 256 (684)
T d1lkxa_ 239 KIIVKAMETLGLKESDQN 256 (684)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999997699999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.82 E-value=0.3 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 99986999938899999839-----998992169
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG~v 689 (800)
..++|..|+||||+++-+.. ...||.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~ 40 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS 40 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999989949999999997398886446530012
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.80 E-value=0.25 Score=22.86 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=20.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19959999869999388999998399
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTll~mLtG~ 681 (800)
|+|--..|+||-|+||||.-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.78 E-value=0.18 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699993889999983
Q 003716 660 CFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLt 679 (800)
-.|++||=+||||||+..|+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999478984999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.71 E-value=0.31 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|..|+||||+++.+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.19 Score=23.56 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++|..|+||||+++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.66 E-value=0.24 Score=23.03 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938899999839998
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
-+|++||=.||||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=87.66 E-value=0.23 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=10.0
Q ss_pred HHHHHHCHHHCCCCHHHH
Q ss_conf 989998467099946899
Q 003716 377 QKLRIMMKMHGLGDGPYW 394 (800)
Q Consensus 377 ~klK~lm~i~GL~~~~YW 394 (800)
.+++..|...|.+.---+
T Consensus 254 ~~l~~Al~~lGf~~~e~~ 271 (710)
T d1br2a2 254 QETLEAMTIMGFTEEEQT 271 (710)
T ss_dssp HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999987499999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.58 E-value=0.2 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++|..|+||||+++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=0.2 Score=23.47 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|.-|+||||+++.+++..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.21 Score=23.34 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999938899999839998
Q 003716 661 FGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ 683 (800)
..++|..|+||||+++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.44 E-value=0.16 Score=24.11 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEC
Q ss_conf 9998699993889999983999899---21699978636
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDI 696 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~pt---sG~v~I~G~~i 696 (800)
.-|.||.|.||||+.+++...+... .....++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~ 77 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 77 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 999889998705469999999725664322111113455
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.41 E-value=0.25 Score=22.92 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHHCHHHCCCCHHHH
Q ss_conf 989998467099946899
Q 003716 377 QKLRIMMKMHGLGDGPYW 394 (800)
Q Consensus 377 ~klK~lm~i~GL~~~~YW 394 (800)
..++..|.+.|.+.---.
T Consensus 278 ~~~~~al~~lgfs~~e~~ 295 (712)
T d1d0xa2 278 KITRQAMDIVGFSQEEQM 295 (712)
T ss_dssp HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999987599899999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=0.18 Score=23.71 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|..|+||||+++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999972
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.13 Score=24.63 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=5.1
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 986999938899999
Q 003716 663 MLGPNGAGKTTFISM 677 (800)
Q Consensus 663 LLG~NGAGKTTll~m 677 (800)
|.||.|+||||+.+.
T Consensus 38 l~Gp~G~GKTt~~~~ 52 (252)
T d1sxje2 38 LYGPNGTGKKTRCMA 52 (252)
T ss_dssp EECSTTSSHHHHHHT
T ss_pred EECCCCCCHHHHHHH
T ss_conf 889999988999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.27 Score=22.67 Aligned_cols=22 Identities=27% Similarity=0.674 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..++|..|+||||+++.+++..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.16 E-value=0.23 Score=23.13 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 9998699993889999983-99----989921
Q 003716 661 FGMLGPNGAGKTTFISMMI-GI----TRTTSG 687 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLt-G~----~~ptsG 687 (800)
..++|..|+||||+++-++ +. ..||.|
T Consensus 5 v~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~ 36 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 36 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999899598999999982988864354321
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.24 Score=23.00 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999986999938899999839998992169997
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 692 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~ 692 (800)
+..|+||-||||||.-+.|+-.+ |-.+|+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~ 31 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLS 31 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99997999999899999999986----992676
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.01 E-value=0.19 Score=23.58 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 8996036876432
Q 003716 167 SENPSDVMASLAD 179 (800)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (800)
.+-.|-++.+|..
T Consensus 20 n~GKSTlfnalT~ 32 (296)
T d1ni3a1 20 NVGKSTFFRAITK 32 (296)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC
T ss_conf 9989999999977
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.95 E-value=0.55 Score=20.75 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=28.7
Q ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 013322787719959999869999388999998399989921699978
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 646 ~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G 693 (800)
..++.-.+.+ .|.-.-+.|++|+||||+--.+.. .|..++.+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaD 45 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD 45 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH-----CCCCEECC
T ss_conf 3178999999-999999981899998999999998-----59741658
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.79 E-value=0.2 Score=23.44 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=8.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999388999998
Q 003716 661 FGMLGPNGAGKTTFISMM 678 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mL 678 (800)
+|++||-++|||||...|
T Consensus 6 i~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999944799999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.77 E-value=0.51 Score=20.92 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHH-CC----CCCCCCEE
Q ss_conf 9998699993889999983-99----98992169
Q 003716 661 FGMLGPNGAGKTTFISMMI-GI----TRTTSGTA 689 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLt-G~----~~ptsG~v 689 (800)
..++|..|+||||+++-+. |. ..|+.|.-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~ 42 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999999949899999998598885434420220
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.69 E-value=0.25 Score=22.90 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=27.9
Q ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 13322787719959999869999388999998399
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 647 av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~ 681 (800)
++ |.-+.+.+||..++.|+.|.||||++.++.--
T Consensus 58 aI-D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 58 VV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HH-HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EE-EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 03-10256367887776679998989999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.32 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|..|+||||+++-+++
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.38 E-value=0.27 Score=22.65 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=5.3
Q ss_pred HCCCCHHHHHHH
Q ss_conf 041416799999
Q 003716 496 MELYPGFALYRG 507 (800)
Q Consensus 496 l~l~P~~~l~~g 507 (800)
+.+-|..++-|.
T Consensus 139 L~~~~e~~~~Ri 150 (208)
T d1gsia_ 139 LAVSAELAGERS 150 (208)
T ss_dssp ECCCHHHHHHHH
T ss_pred ECCCHHHHHHHH
T ss_conf 635678999998
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.34 E-value=0.35 Score=21.95 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|.-|+||||+++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.32 E-value=0.28 Score=22.54 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=13.1
Q ss_pred HHHHHHHCHHHCCCCHHHHH
Q ss_conf 99899984670999468999
Q 003716 376 QQKLRIMMKMHGLGDGPYWL 395 (800)
Q Consensus 376 e~klK~lm~i~GL~~~~YWl 395 (800)
-.+++..|.+.|.+..--+.
T Consensus 282 f~~~~~al~~lg~s~~e~~~ 301 (794)
T d2mysa2 282 LMATDSAIDILGFSADEKTA 301 (794)
T ss_dssp HHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999980999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.24 E-value=0.26 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|.-|+||||+++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.24 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|..|+||||+++.+++
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899098999999984
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.38 Score=21.77 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHH-HCC
Q ss_conf 999869999388999998-399
Q 003716 661 FGMLGPNGAGKTTFISMM-IGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mL-tG~ 681 (800)
..++|..|+||||+++-+ .|.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~ 30 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGA 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999929999999997199
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.11 E-value=0.25 Score=22.89 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHC--CCCCCCCE
Q ss_conf 99986999938899999839--99899216
Q 003716 661 FGMLGPNGAGKTTFISMMIG--ITRTTSGT 688 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG--~~~ptsG~ 688 (800)
..+||..|+||||+++.+.- ...||.|-
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 999989999989999988468988872414
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.06 E-value=0.28 Score=22.56 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 99986999938899999839-----9989921
Q 003716 661 FGMLGPNGAGKTTFISMMIG-----ITRTTSG 687 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-----~~~ptsG 687 (800)
..++|..|+||||+++.+.+ ...||.|
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~ 37 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 37 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999398999999982998864454200
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.97 E-value=0.14 Score=24.35 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 99869999388999998399989921699978636
Q 003716 662 GMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 662 gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i 696 (800)
-+.||.|.||||+.+.+........+ .++|.+.
T Consensus 39 L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~ 71 (238)
T d1in4a2 39 LLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL 71 (238)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCC--CCCCCCC
T ss_conf 98799997388999999850388853--3257442
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=85.81 E-value=0.37 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=8.8
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 689889669999999
Q 003716 762 QAGKYSGGMKRRLSV 776 (800)
Q Consensus 762 ~~~~lSGG~KRrLSi 776 (800)
....|||+.-+.+.-
T Consensus 212 ~t~G~s~adi~~l~~ 226 (256)
T d1lv7a_ 212 GTPGFSGADLANLVN 226 (256)
T ss_dssp TCTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
T ss_conf 689989999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.49 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHC-C----CCCCCCEEE
Q ss_conf 99986999938899999839-9----989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIG-I----TRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG-~----~~ptsG~v~ 690 (800)
..++|..|+||||+++-+.+ . ..||.|...
T Consensus 6 vvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~ 40 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 99999999699999999971999987588310210
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.54 E-value=0.3 Score=22.34 Aligned_cols=10 Identities=10% Similarity=-0.250 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q ss_conf 9979999997
Q 003716 309 SINLASNAYL 318 (800)
Q Consensus 309 ~lN~i~naiL 318 (800)
.++++.|+..
T Consensus 51 ~l~~a~~~~~ 60 (258)
T d2i1qa2 51 MHQSCVNLQN 60 (258)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.24 E-value=0.23 Score=23.04 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=8.4
Q ss_pred EECCCCCCHHHHHHHHHC
Q ss_conf 986999938899999839
Q 003716 663 MLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 663 LLG~NGAGKTTll~mLtG 680 (800)
|.||.|.||||+.++++.
T Consensus 40 l~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 40 FYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp EECSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 988998775589999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.67 E-value=0.46 Score=21.19 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCE
Q ss_conf 9999869999388999998399-----9899216
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI-----TRTTSGT 688 (800)
Q Consensus 660 i~gLLG~NGAGKTTll~mLtG~-----~~ptsG~ 688 (800)
-..++|..|+||||+++.+.+. ..||.|+
T Consensus 7 KivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~ 40 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999997999999999749898544663110
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.53 Score=20.82 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCCEEE
Q ss_conf 999869999388999998399-----989921699
Q 003716 661 FGMLGPNGAGKTTFISMMIGI-----TRTTSGTAY 690 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~-----~~ptsG~v~ 690 (800)
..++|..|+||||+++.+.+. ..|+.|..+
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~ 40 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 40 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999899899999999970989875587502111
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=0.24 Score=23.03 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
+.++|..|+||||+++.+++..
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999908899999998498
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.34 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
..++|..|+||||+++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999899999999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.59 E-value=0.29 Score=22.44 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=6.0
Q ss_pred EECCCCCCHHHHHHHH
Q ss_conf 9869999388999998
Q 003716 663 MLGPNGAGKTTFISMM 678 (800)
Q Consensus 663 LLG~NGAGKTTll~mL 678 (800)
+-|.=||||||+++-+
T Consensus 8 itGFLGaGKTTll~~l 23 (222)
T d1nija1 8 LTGFLGAGKTTLLRHI 23 (222)
T ss_dssp EEESSSSSCHHHHHHH
T ss_pred EEECCCCCHHHHHHHH
T ss_conf 8648889999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.46 E-value=0.4 Score=21.62 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=13.6
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99869999388999998399
Q 003716 662 GMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 662 gLLG~NGAGKTTll~mLtG~ 681 (800)
.|+||-||||||.-+.|+-.
T Consensus 4 ~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 4 VLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99889999989999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=0.38 Score=21.76 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++||-||||||.-+.|.-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999879999989999999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.10 E-value=0.26 Score=22.80 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.0
Q ss_pred CCCCCCHHHHHHHHHCC
Q ss_conf 69999388999998399
Q 003716 665 GPNGAGKTTFISMMIGI 681 (800)
Q Consensus 665 G~NGAGKTTll~mLtG~ 681 (800)
-||-....-+++.+.+.
T Consensus 177 ~p~~~~R~~il~~~l~~ 193 (265)
T d1r7ra3 177 LPDEKSRVAILKANLRK 193 (265)
T ss_dssp CCCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 60788899999999605
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=83.08 E-value=0.4 Score=21.56 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=10.9
Q ss_pred HHHHHHCHHHCCCCHHHH
Q ss_conf 989998467099946899
Q 003716 377 QKLRIMMKMHGLGDGPYW 394 (800)
Q Consensus 377 ~klK~lm~i~GL~~~~YW 394 (800)
..+++.|...|.+..--.
T Consensus 281 ~~~~~al~~lg~~~~e~~ 298 (789)
T d1kk8a2 281 KLCDEAFDILGFTKEEKQ 298 (789)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999875399899999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=82.98 E-value=0.47 Score=21.13 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=10.5
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99869999388999998399
Q 003716 662 GMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 662 gLLG~NGAGKTTll~mLtG~ 681 (800)
.|+||-||||||.-+.|+-.
T Consensus 4 ~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 4 VLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99889999879999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.81 E-value=0.74 Score=19.93 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=7.0
Q ss_pred EECCCCCCHHHHH
Q ss_conf 9869999388999
Q 003716 663 MLGPNGAGKTTFI 675 (800)
Q Consensus 663 LLG~NGAGKTTll 675 (800)
++.+||..++..-
T Consensus 257 ~~~~~g~~~~~~~ 269 (333)
T d1p6xa_ 257 LLDDRGVILEVHA 269 (333)
T ss_dssp GBCTTSCBCHHHH
T ss_pred HCCCCCCCHHHHH
T ss_conf 5486786047899
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.78 E-value=0.34 Score=22.04 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999938899999839
Q 003716 661 FGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG 680 (800)
.|++||=++|||||.+.|++
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.52 E-value=0.56 Score=20.70 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCC
Q ss_conf 999869999388999998---39998
Q 003716 661 FGMLGPNGAGKTTFISMM---IGITR 683 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mL---tG~~~ 683 (800)
++.+||-.+|||||++.| +|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g~i~ 37 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSKMIY 37 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99993789898999999999869835
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.39 E-value=0.47 Score=21.14 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|+||-||||||.-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.32 E-value=0.3 Score=22.40 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=11.6
Q ss_pred EECCCCCCHHHHHHHHHCCC
Q ss_conf 98699993889999983999
Q 003716 663 MLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 663 LLG~NGAGKTTll~mLtG~~ 682 (800)
|.||-|.||||+.+.+++..
T Consensus 40 l~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 40 LFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 88979987888999999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=0.59 Score=20.53 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.9
Q ss_pred CEEEEECCCC
Q ss_conf 5179732698
Q 003716 141 PATILLTGNN 150 (800)
Q Consensus 141 ~~~~~~tg~~ 150 (800)
...+|+.|..
T Consensus 52 ~~~~lf~Gp~ 61 (315)
T d1r6bx3 52 VGSFLFAGPT 61 (315)
T ss_dssp SEEEEEECST
T ss_pred CEEEEEECCC
T ss_conf 6589997787
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.95 E-value=0.5 Score=20.97 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 999869999388999998399989921699978636
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i 696 (800)
..++||-||||||.-+.|+-.+ |-.+|..-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~----g~~~i~~~d~ 36 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF----HAAHLATGDM 36 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH----CCEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCEEECCCC
T ss_conf 9998999999899999999996----9945834420
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.70 E-value=0.47 Score=21.13 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=12.2
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 1058888887545447777799980784279999
Q 003716 180 NVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRP 213 (800)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 213 (800)
.++|.|...|..+ -+|.+...|..
T Consensus 37 ~ligDDe~~w~~~----------gv~n~EggcYa 60 (313)
T d2olra1 37 RLIGDDEHGWDDD----------GVFNFEGGCYA 60 (313)
T ss_dssp EEEESSCEEEETT----------EEEESCSEEEE
T ss_pred CEECCCEEEECCC----------CEEEECCCCEE
T ss_conf 2145865563588----------73640364220
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=81.65 E-value=0.64 Score=20.34 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 6999999999984999
Q 003716 739 ALTQAVEESLKSVNLF 754 (800)
Q Consensus 739 ~~~~~v~~~L~~l~L~ 754 (800)
+.++.++.+|+.+++.
T Consensus 661 ~~k~~~~~lL~~l~~~ 676 (730)
T d1w7ja2 661 DRKQTCKNVLEKLILD 676 (730)
T ss_dssp CHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHCCCC
T ss_conf 8789999999976999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.62 E-value=0.53 Score=20.86 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993889999983999
Q 003716 661 FGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~~ 682 (800)
..|+||=||||||.-+.|+-.+
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.39 E-value=0.3 Score=22.37 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999388999998399
Q 003716 661 FGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 661 ~gLLG~NGAGKTTll~mLtG~ 681 (800)
..++|.-|+||||+++-+++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.98 E-value=0.49 Score=21.04 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=12.0
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 1058888887545447777799980784279999
Q 003716 180 NVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRP 213 (800)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 213 (800)
.++|.|...|. +.-+|.+...|..
T Consensus 37 ~ligDDe~~w~----------~~gv~~~EgGcya 60 (318)
T d1j3ba1 37 PLIGDDEHGWS----------EDGVFNFEGGCYA 60 (318)
T ss_dssp CEEESSEEEEC----------SSCEEESCSEEEE
T ss_pred EEECCCCEEEC----------CCCEEEECCCEEE
T ss_conf 57737623675----------8873651264144
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.84 E-value=0.4 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=30.1
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 227877199599998699993889999983999899216999
Q 003716 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691 (800)
Q Consensus 650 ~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I 691 (800)
|.-+.+.+||..++.|+.|.|||+++..+.-....+...+-+
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 501454677667600677888579999977654046753555
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.49 E-value=0.59 Score=20.56 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=5.5
Q ss_pred HCCCCHHHHHHH
Q ss_conf 041416799999
Q 003716 496 MELYPGFALYRG 507 (800)
Q Consensus 496 l~l~P~~~l~~g 507 (800)
+.+-|..+.-|.
T Consensus 156 Ld~~~~~~~~Ri 167 (241)
T d2ocpa1 156 LQASPQVCLKRL 167 (241)
T ss_dssp EECCHHHHHHHH
T ss_pred ECCCHHHHHHHH
T ss_conf 337899999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.06 E-value=0.5 Score=20.98 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHH-HHHHHHCCCCCH
Q ss_conf 8999998399989921699978636765888622438864888889999999999-998560499915
Q 003716 672 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL-LFYGRLKNLKGP 738 (800)
Q Consensus 672 TTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~~iGycPQ~d~L~~~LT~~EhL-~~ya~lkg~~~~ 738 (800)
++++..+-+......+-+.|.--+-...+++... .+ +.+....++++..++.+ ....+.......
T Consensus 128 ~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~-~~-rF~~~i~~P~~~~r~~il~~l~~~~~~~~~ 193 (246)
T d1d2na_ 128 QALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM-LN-AFSTTIHVPNIATGEQLLEALELLGNFKDK 193 (246)
T ss_dssp HHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC-TT-TSSEEEECCCEEEHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHCCCHHH-CC-CCCEEEECCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 9999986077765450145532488322561020-18-663388559910599999999742689868
|