Citrus Sinensis ID: 003723

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHcHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHcccc

ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccHEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEEHHHHHEcccHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccccccccEEcccHHHccHHHHHHHHHHHHccHHHEcccccHHHHHHHHHHccHHHHHEccc

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVletgpgwrlvsphfsvlldkaifpalvlnekdisEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGvisvskgppmgtpsncssvsskrkkgekskrnsmrstmgellvlpflsrfpipcdanashsriqKDYFGVLMAYGGLQEFLREQKSEFTANlvrsrvlplysvsVCLPYLVASANWILGELasclpedisADVYSSLLKALQMldkgdtscypvrASAAGAIVGLlendymppewypLLQVIVGRIGYEDEENSILFELLSSVVGaanenvadhIPYIVSSLVAAISkhmhpssepwpQVVERGFAALALMAQSWENFLREEVEldqssgkweSGQAAIAKAFSALLQQAWLThiqplecevsappsciddssMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWhaweetedlsvFDCIKEIVNLHSKYELKNFIvrqmppppappvppqsiIEGIGAFLSEAILqypsatwracscvhtllhvpkysfetegvkqSLTISFSCAAFSRfraiqskpsslwkPVVLAISSCYLCYPAVVEGILkkdedggfaLWGSALAFLcsssleprlslESEIKLAVLTLAKVVERLLglgnpgsslLQDCYASLMEAAVQLKEvqedeendegddeeaedkeddneesedddedsegdeceeTEEEFLERYAKAAVNLenntlveegdvedqehdielgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVisvskgppmgtpsncssvsskrkkgekskrnsmrstmGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKevqedeendegddeeaedkeddneesedddedsegdeCEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIelgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCssvsskrkkgekskRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMppppappvppQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCsssleprlsleseIKLAVLTLAKVVERllglgnpgssllQDCYASLMEAAVQLKEVQedeendegddeeaedkeddneesedddedsegdeceeteeeFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

*****NSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISV***********************************ELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH***EPWPQVVERGFAALALMAQSWENFLREEVELD***GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV***************IIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV***************************************************YAKAAVNL*****************IELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLL**

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCS**************NSMRSTMGELLVLPFLSRFP************QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHP******QVVERGFAALALMAQSW****************WESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVR*************SIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV****************************************CEETEEEFLERYAKAAV****************EHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPP*************************RSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS*********WPQVVERGFAALALMAQSWENFLREEV***********GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLK********************************************FLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG****************************STMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR*****DQSSGKWESGQAAIAKAFSALLQQAWLTHIQP**CEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQE*********************************CEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQxxxxxxxxxxxxxxxxxxxxxEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
449441658		1085	PREDICTED: uncharacterized protein LOC10	0.987	0.728	0.612	0.0
356565000		1104	PREDICTED: uncharacterized protein LOC10	0.982	0.711	0.617	0.0
356521695		1094	PREDICTED: uncharacterized protein LOC10	0.982	0.718	0.606	0.0
255556524		965	protein transporter, putative [Ricinus c	0.793	0.658	0.684	0.0
297834642		1091	protein transporter [Arabidopsis lyrata	0.983	0.721	0.561	0.0
145338625		1090	armadillo/beta-catenin-like repeats-cont	0.982	0.721	0.556	0.0
110738031		1090	hypothetical protein [Arabidopsis thalia	0.982	0.721	0.556	0.0
334185410		1093	armadillo/beta-catenin-like repeats-cont	0.982	0.719	0.552	0.0
357155759		1092	PREDICTED: uncharacterized protein LOC10	0.973	0.713	0.527	0.0
326530652		1098	predicted protein [Hordeum vulgare subsp	0.98	0.714	0.5	0.0

>gi\|449441658\|ref\|XP_004138599.1\| PREDICTED: uncharacterized protein LOC101205180 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/797 (61%), Positives = 622/797 (78%), Gaps = 7/797 (0%)

Query: 1    MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKA 60
            MPDI+   L IV YS N  KLD L ERIISLAFDVISHVLETG GWRLVSPHFS L+   
Sbjct: 292  MPDIIKCALNIVNYSKNAHKLDSLSERIISLAFDVISHVLETGRGWRLVSPHFSTLIHSG 351

Query: 61   IFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG 120
            IFP L++NEKDI EWEED DEYIRKN PS+LEE+SGW+EDL+TARKSAINLLGVI++SKG
Sbjct: 352  IFPTLIMNEKDIYEWEEDPDEYIRKNLPSDLEEVSGWKEDLYTARKSAINLLGVIAMSKG 411

Query: 121  PPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 180
            PP  T +N SS SSKRKKG K + N+  +TMGEL+VLPFL ++ IP DANAS + I   Y
Sbjct: 412  PPTVTHTNGSSASSKRKKGNK-RTNNQCATMGELVVLPFLLKYSIPSDANASQTSIVNSY 470

Query: 181  FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE 240
            +GVL+ YGGL +FLREQ+  + A L+R+RVLPLY+++ CLPYL+AS+NW+LGELASCLPE
Sbjct: 471  YGVLIGYGGLLDFLREQQPGYVAFLIRTRVLPLYAMTTCLPYLIASSNWVLGELASCLPE 530

Query: 241  DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIG 300
            ++ A+ YSSL+KAL M DK + S YPVR SAAGAI  LLENDY+PPEW PLLQV++G +G
Sbjct: 531  EVCAETYSSLVKALSMPDK-EVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGVG 589

Query: 301  YEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAA 360
             +DEENSILF+LLSS+V A NEN+  HIP++V SLV AISK + P+ EPWPQVVE GFAA
Sbjct: 590  QDDEENSILFQLLSSIVEAGNENIGIHIPHVVLSLVGAISKSIPPNLEPWPQVVEHGFAA 649

Query: 361  LALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPS 420
            L++MAQSWENF+ E++E D S  +  S QA I+++FS+LLQ+   +     + E   PPS
Sbjct: 650  LSVMAQSWENFILEKIEQDASYERSTSDQATISRSFSSLLQEK--SEEMDDDREFLPPPS 707

Query: 421  CIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIV 480
            CID SS LL+ I+LSV+E N I ELK+SEL+ VWADLI DWH+WEE+ED SVF+CI E+V
Sbjct: 708  CIDHSSRLLQFIMLSVTESNTIVELKISELVSVWADLIADWHSWEESEDFSVFNCIMEVV 767

Query: 481  NLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLH 540
             L+SKY LKNF V+  P PPAPPVP +SI+E IGAF+++AI +Y SATW+ACSC+H LL+
Sbjct: 768  RLNSKYALKNFFVKSAPSPPAPPVPRRSIVENIGAFINQAISKYTSATWKACSCIHVLLN 827

Query: 541  VPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGIL 600
            VP YSFE EGVK+SL ++FS  +FSRFR IQ KPS+LWKP++L+IS+CY+C+P  VE IL
Sbjct: 828  VPNYSFEVEGVKESLVVTFSQTSFSRFREIQGKPSALWKPLLLSISTCYICHPDTVERIL 887

Query: 601  KKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQD 660
            +K + GGF +W SAL +LCSSS  P LS ESEIKL V+T AKV+ER++ LG P    L  
Sbjct: 888  EKFDGGGFTVWVSALGYLCSSSFAPGLSAESEIKLIVMTFAKVLERIIELGKPRDDFLWK 947

Query: 661  CYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLE 720
            C+ SLMEA++QLKEV+E++E +  ++EE E+ + D  E ++D +  E    EETEEEFL+
Sbjct: 948  CFGSLMEASIQLKEVREEKEEESDENEEEEEDDGDETEDDEDSDADEL---EETEEEFLD 1004

Query: 721  RYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSS 780
            RYAKAA+ LEN++ +EEG+VED++ DIELG  +EVD+ +++ + +E+YH +++QGQ   S
Sbjct: 1005 RYAKAAIELENSSFIEEGNVEDEDQDIELGCFEEVDEGRIIYTLLEKYHPILIQGQGWPS 1064

Query: 781  QLISKFLKAYPQLTYLL 797
             L  +FL AYP  T  L
Sbjct: 1065 DLPMRFLNAYPDYTAFL 1081

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356565000\|ref\|XP_003550733.1\| PREDICTED: uncharacterized protein LOC100782006 [Glycine max]	Back alignment and taxonomy information

>gi\|356521695\|ref\|XP_003529487.1\| PREDICTED: uncharacterized protein LOC100783023 [Glycine max]	Back alignment and taxonomy information

>gi\|255556524\|ref\|XP_002519296.1\| protein transporter, putative [Ricinus communis] gi\|223541611\|gb\|EEF43160.1\| protein transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297834642\|ref\|XP_002885203.1\| protein transporter [Arabidopsis lyrata subsp. lyrata] gi\|297331043\|gb\|EFH61462.1\| protein transporter [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|145338625\|ref\|NP_188360.3\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642419\|gb\|AEE75940.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110738031\|dbj\|BAF00950.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334185410\|ref\|NP_001189916.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642420\|gb\|AEE75941.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357155759\|ref\|XP_003577228.1\| PREDICTED: uncharacterized protein LOC100846341 [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326530652\|dbj\|BAK01124.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
TAIR\|locus:2077715		1030	AT3G59020 "AT3G59020" [Arabido	0.112	0.087	0.275	2.6e-07
UNIPROTKB\|E2R703		1036	IPO8 "Uncharacterized protein"	0.082	0.063	0.257	4.4e-05
UNIPROTKB\|O15397		1037	IPO8 "Importin-8" [Homo sapien	0.082	0.063	0.257	5.6e-05
UNIPROTKB\|F1SGB6		900	IPO8 "Uncharacterized protein"	0.082	0.073	0.257	6.9e-05
UNIPROTKB\|E1B8Q9		1039	IPO8 "Uncharacterized protein"	0.082	0.063	0.257	9.5e-05
MGI\|MGI:2444611		1010	Ipo8 "importin 8" [Mus musculu	0.082	0.065	0.257	0.00025
TAIR\|locus:2065939		1040	SAD2 "AT2G31660" [Arabidopsis	0.112	0.086	0.285	0.00036
CGD\|CAL0002327		1002	orf19.5834 [Candida albicans (	0.112	0.089	0.290	0.00056

TAIR\|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 128 (50.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
 Identities = 27/98 (27%), Positives = 54/98 (55%)

Query:    23 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 82
             +L +R+I+L    +S+ +     + L+ PH + LL + +FP +  N+ D   W+ED  EY
Sbjct:   313 YLPDRVINLILQYLSNSISKSSMYNLLQPHLNTLLFEIVFPLMCFNDNDQMLWDEDPHEY 372

Query:    83 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG 120
             +RK +     +I    EDL++ R ++++ +  +   +G
Sbjct:   373 VRKGY-----DII---EDLYSPRTASMDFVTELVRKRG 402

GO:0000059 "protein import into nucleus, docking" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O15397 IPO8 "Importin-8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SGB6 IPO8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B8Q9 IPO8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2444611 Ipo8 "importin 8" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

TAIR\|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0002327 orf19.5834 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		800
COG5656		970	COG5656, SXM1, Importin, protein involved in nucle	9e-08
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	1e-05
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	2e-05
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	7e-05
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	8e-05
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	9e-05
pfam09026		101	pfam09026, Cenp-B_dimeris, Centromere protein B di	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam03344		715	pfam03344, Daxx, Daxx Family	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	3e-04
pfam04546		211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	3e-04
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	3e-04
TIGR01651		600	TIGR01651, CobT, cobaltochelatase, CobT subunit	4e-04
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	5e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	6e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	6e-04
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	6e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04
pfam05285		317	pfam05285, SDA1, SDA1	9e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
pfam12253		76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	0.001
pfam08553		794	pfam08553, VID27, VID27 cytoplasmic protein	0.001
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.001
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
pfam04889		241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.001
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.002
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.002
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.002
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
PRK14160		211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.002
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	0.003
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.003
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.003
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
PTZ00248		319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.004
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.004
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.004

>gnl\|CDD\|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score = 55.6 bits (134), Expect = 9e-08
 Identities = 62/329 (18%), Positives = 119/329 (36%), Gaps = 56/329 (17%)

Query: 46  WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTAR 105
           WRL+ PH   ++   IFP L L+E++   +E D DEYIR+ +        G   DL    
Sbjct: 336 WRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN---GLSPDLAALF 392

Query: 106 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPI 165
                   +IS S                  K+ E++ +           +L FL     
Sbjct: 393 ------FLIISKS------------------KRKEETFQG----------ILSFLLSILG 418

Query: 166 PCDANASHSRIQKDYFGVLMAYGGLQEFLREQK---SEFTANLVRSRVLPLYSVSVCLPY 222
              A  S+    +   G L     ++ F+ +     +      + + V+P +  +    +
Sbjct: 419 QSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVM-EYFIVNHVIPAFRSNYG--F 475

Query: 223 LVASANWILGELASCLPE-DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 281
           L + A   +  +     +  I  + Y +    L+       +  PV   AA A+   + N
Sbjct: 476 LKSRACEFISTIEEDFKDNGILLEAYENTHNCLK------NNHLPVMIEAALALQFFIFN 529

Query: 282 DYMPPEWYPLLQVIVGRIGY--EDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAI 339
           +    ++   +   + ++       E   L  ++ S V   +E ++   P +  SLV   
Sbjct: 530 EQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQF 589

Query: 340 SK----HMHPSSEPWPQVVERGFAALALM 364
            K     +  SS+    V ++  AA  ++
Sbjct: 590 LKIAQSLLENSSDTSSVVDDKQMAASGIL 618

Length = 970

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A	Back alignment and domain information

>gnl\|CDD\|219900 pfam08553, VID27, VID27 cytoplasmic protein	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		800
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	100.0
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.97
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.97
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.92
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.83
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.67
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.6
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.46
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.4
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.05
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	97.54
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.43
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.16
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.54
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.36
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.09
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.96
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	95.94
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.79
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	95.66
KOG2081		559	consensus Nuclear transport regulator [Intracellul	95.18
PTZ00429		746	beta-adaptin; Provisional	94.97
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	94.67
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	94.63
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	94.46
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.31
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	94.16
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.05
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.96
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.85
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.76
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	93.61
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	92.4
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.16
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	92.14
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	91.93
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.61
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.4
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.03
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	90.93
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	89.97
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	89.63
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	88.85
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.71
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	88.22
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.16
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.73
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	87.13
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	86.58
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	86.55
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	85.68
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	85.43
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	85.3
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	84.83
KOG1242		569	consensus Protein containing adaptin N-terminal re	84.02
PRK09687		280	putative lyase; Provisional	83.75
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	83.08
KOG1824		1233	consensus TATA-binding protein-interacting protein	83.06
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	81.77
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	80.66

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.9e-113  Score=984.32  Aligned_cols=640  Identities=22%  Similarity=0.342  Sum_probs=534.5

Q ss_pred             CchhHHHHHHHHHhhcccccCcccCHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHhhccccCChhhHhhHhhCHH
Q 003723            1 MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDAD   80 (800)
Q Consensus         1 ~p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~   80 (800)
                      +|.|++++||+|++  | +.+.|+|||+++++++|+.+|++++.+||+++||+..|++++|||.||+|++|+|+|++||+
T Consensus       296 ~~~ile~~lk~l~~--~-~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~  372 (1010)
T KOG1991|consen  296 AQGILEVFLKILEQ--W-RQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY  372 (1010)
T ss_pred             HHHHHHHHHHHHHH--H-HhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH
Confidence            47899999999999  6 44999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCchhhhccccccccchHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccccccchhhHhHHHHH
Q 003723           81 EYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFL  160 (800)
Q Consensus        81 EYIr~~~d~~~~~~~g~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i~i~~~L  160 (800)
                      ||||+++|+        ++|++|||.||.+||.++                 ++||||+     ++|+ ++.  |++++|
T Consensus       373 EYiR~~~Di--------~ed~~sp~~Aa~~~l~~~-----------------~~KR~ke-----~l~k-~l~--F~~~Il  419 (1010)
T KOG1991|consen  373 EYIRKKFDI--------FEDGYSPDTAALDFLTTL-----------------VSKRGKE-----TLPK-ILS--FIVDIL  419 (1010)
T ss_pred             HHHHhcCch--------hcccCCCcHHHHHHHHHH-----------------HHhcchh-----hhhh-HHH--HHHHHH
Confidence            999999998        799999999999999997                 9999887     4554 554  699999


Q ss_pred             hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhhcchhH---HHHHHHhhhhcccCCCCCcchHHHHHHHHHHhhcc
Q 003723          161 SRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFT---ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC  237 (800)
Q Consensus       161 ~~~~~~~~~~~~~~~~~k~kdgaL~~vg~La~~l~~~~~~~~---e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~  237 (800)
                      ++|..++.    ..++.|+|||||+++|+|++.|.| +++|.   +.|+.+||+|+|+  |+.|||||||||++|+|++.
T Consensus       420 ~~~~~~~~----~~~~~rqkdGAL~~vgsl~~~L~K-~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~  492 (1010)
T KOG1991|consen  420 TRYKEASP----PNKNPRQKDGALRMVGSLASILLK-KSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSI  492 (1010)
T ss_pred             HhhcccCC----CccChhhhhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhc
Confidence            99987753    457899999999999999999987 55555   8899999999999  89999999999999999976


Q ss_pred             --CCcchHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHhhhcC-----CCCccHHHHHHHHHHhhcccccchHHHH
Q 003723          238 --LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILF  310 (800)
Q Consensus       238 --l~~~~l~~v~~~ll~~L~~~~~~~~~~lpVrv~AA~AL~~~l~~~-----~l~p~l~~ll~~Ll~~l~~e~~e~e~l~  310 (800)
                        .++.++.++++++.+||.+++     ++||||+||.||+.|+.++     +++|+++++||+||+ |+|+. |||.|+
T Consensus       493 df~d~~~l~~ale~t~~~l~~d~-----~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt  565 (1010)
T KOG1991|consen  493 DFKDPNNLSEALELTHNCLLNDN-----ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLT  565 (1010)
T ss_pred             cCCChHHHHHHHHHHHHHhccCC-----cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHH
Confidence              788999999999999999554     5999999999999999875     699999999999999 99999 999999


Q ss_pred             HHHHHHHHhhhhhhcchHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhhhhh
Q 003723          311 ELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQA  390 (800)
Q Consensus       311 ~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~~~~~d~~~d~~~~~~~~~~~~  390 (800)
                      .+|+++|+.|+|+++|||++||++|+++|+|++....+                        .+  +.++++.++++|  
T Consensus       566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~------------------------~~--~~~ddk~iaA~G--  617 (1010)
T KOG1991|consen  566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSED------------------------ED--ESDDDKAIAASG--  617 (1010)
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCC------------------------CC--ccchHHHHHHHH--
Confidence            99999999999999999999999999999999874211                        11  112234456666  


Q ss_pred             HHHHHHHHHHHHhhhhccCccccccCCCcchHHHHHHHHHHHHHHhcchhHHHHhhHHHHHHHHHHHH------------
Q 003723          391 AIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------  458 (800)
Q Consensus       391 a~l~ti~tll~~~~~~~~~~~~~s~~~~~~~~~~le~~l~pii~~i~~~~~~l~~~v~ef~~~~~~ll------------  458 (800)
                       +|+||+|||            .|+++.|+++.++|++++|++.++      |++++.|||+|+++++            
T Consensus       618 -iL~Ti~Til------------~s~e~~p~vl~~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp  678 (1010)
T KOG1991|consen  618 -ILRTISTIL------------LSLENHPEVLKQLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISP  678 (1010)
T ss_pred             -HHHHHHHHH------------HHHhccHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCH
Confidence             699999999            999999999999999999999999      9999999999999999            


Q ss_pred             HhhHHHHHhh---cccHHhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCChhhHHHHHHHHhc-cccccCchhhHhhHHH
Q 003723          459 GDWHAWEETE---DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLS-EAILQYPSATWRACSC  534 (800)
Q Consensus       459 ~~W~~~~~~~---~~~~~dy~~e~~~~~~~~~L~Nfi~~g~~~~~~~~~~~~~i~~i~~~~~s-~~~~~~~~~~~~~~~~  534 (800)
                      .||.+|+.++   ..++++||++|++     .|+|||++|++++..+|.|++.+++||++.++ ++.++  .....+|..
T Consensus       679 ~mW~ll~li~e~~~~~~~dyf~d~~~-----~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D--~d~~~a~kL  751 (1010)
T KOG1991|consen  679 IMWGLLELILEVFQDDGIDYFTDMMP-----ALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED--SDCESACKL  751 (1010)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHH-----HHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch--HHHHHHHHH
Confidence            7999999997   6789999999999     99999999999999999999999999996554 44422  212224444


Q ss_pred             HHHh-----cCCCCCcccchhhhhhcHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhhccChHHHHHHHHhcCc--ch
Q 003723          535 VHTL-----LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GG  607 (800)
Q Consensus       535 ~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~al~rL~~~~~~~~~~~~~~l~vi~~~~~y~p~~~l~~L~~~~~--~~  607 (800)
                      ++.+     |.+++|           +|.|+++++.|+++ ..+++.+++++++|+++|+||||..|+++|++.|.  .|
T Consensus       752 le~iiL~~kg~~dq~-----------iplf~~~a~~~l~~-~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~f  819 (1010)
T KOG1991|consen  752 LEVIILNCKGLLDQY-----------IPLFLELALSRLTR-EVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNF  819 (1010)
T ss_pred             HHHHHHHhcCcHhhH-----------hHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccH
Confidence            5544     567888           99999999999986 36788999999999999999999999999999996  89


Q ss_pred             HHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHHhhh--hcCC-CchhhHHHH---HHHHHHHHHHHHHHhhhcccC
Q 003723          608 FALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL--LGLG-NPGSSLLQD---CYASLMEAAVQLKEVQEDEEN  681 (800)
Q Consensus       608 f~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilgL~sLl~~~--p~l~-~~~~~l~~~---~~~~L~~a~~~~~e~~~~~~~  681 (800)
                      |..||+.+         ..++++||||+||+||++|++.+  |.+. ...++++..   ++.+||+|++.|.+.++++++
T Consensus       820 f~~wf~~~---------~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~  890 (1010)
T KOG1991|consen  820 FTLWFQFI---------NQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSE  890 (1010)
T ss_pred             HHHHHHHH---------HHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999         78888999999999999999984  3332 223344444   599999999999999998764


Q ss_pred             CCCCCccccccccCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhccccccccCCCCCCc--ccccccc--CCccchhh
Q 003723          682 DEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVED--QEHDIEL--GSLDEVDQ  757 (800)
Q Consensus       682 ~~~~~~~~~d~d~~~~d~~~~~~~~d~de~~e~~~eyle~l~~~a~~~~~~~~~d~~~~~d--~~eE~~l--spLD~v~~  757 (800)
                      |    +++++++++++      -.+|+||.++++++|++.+++-+..-.+..++|||+|+|  +++|+++  ||||.||+
T Consensus       891 e----~~~~~~~~~e~------~~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~  960 (1010)
T KOG1991|consen  891 E----GEEEDDDEEED------FIDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDP  960 (1010)
T ss_pred             c----ccCCCCcchhh------ccCccccccccchhHHHhhccccccccccccccccccchhccccccccccCcccccch
Confidence            2    11111111110      112333344445567777766432211212223334443  4455555  99999999


Q ss_pred             HHHHHH---HHhhhCcccccc
Q 003723          758 LKVVAS---SIERYHNVIMQG  775 (800)
Q Consensus       758 ~~~~~~---~~~~~~~~~~~~  775 (800)
                      |..|++   .+|+.+++||+.
T Consensus       961 f~~f~~~i~~lq~~d~~~yq~  981 (1010)
T KOG1991|consen  961 FQLFKEAITNLQSSDAVRYQK  981 (1010)
T ss_pred             HHHHHHHHHhhhccChHHHHH
Confidence            988655   556778899984

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		800
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3cx5_F		146	Cytochrome B-C1 complex subunit 6; complex III, el	2e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

 Score = 75.7 bits (185), Expect = 3e-14
 Identities = 52/377 (13%), Positives = 113/377 (29%), Gaps = 72/377 (19%)

Query: 1   MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS--PHFSVLLD 58
              ++N  +QI              + ++S +   ++ V      + + +     + + +
Sbjct: 281 FGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340

Query: 59  KAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVS 118
           + I P + L E+D+  +E+D  EYIR++             D  T R++  + L  +   
Sbjct: 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTDTRRRACTDFLKELKEK 391

Query: 119 KGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQK 178
               +                                 L  +  F     ++ S +   K
Sbjct: 392 NEVLVTNI-----------------------------FLAHMKGFVDQYMSDPSKNWKFK 422

Query: 179 D----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYSVSVCLPYLVASANWIL 231
           D     F  L   G +        +          +     L S ++    L   A   +
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482

Query: 232 GELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---------- 281
               + L +    ++   L   LQ  +      Y V   AA  I  +L            
Sbjct: 483 YTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFI 536

Query: 282 ---DYMPPEWYPLLQVIVGRIGYEDE------ENSILFELLSSVVGAANENVADHIPYIV 332
              + +      LL+ ++  I           EN  L   +  V+  + +++    P ++
Sbjct: 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL 596

Query: 333 SSLVAAISKHMHPSSEP 349
           +  +  ++      S P
Sbjct: 597 AQFIEIVTIMAKNPSNP 613

PyMOL of 1wa5

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		800
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	7e-12

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.9 bits (162), Expect = 7e-12
 Identities = 85/724 (11%), Positives = 191/724 (26%), Gaps = 108/724 (14%)

Query: 1   MPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLV--SPHFSVLLD 58
           + + +     ++   +N  K D L    +S +   ++ V      + +       + + +
Sbjct: 285 INEFIQITWNLLTSISNQPKYDIL----VSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340

Query: 59  KAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVS 118
           + I P + L E+D+  +E+D  EYIR++             D  T R++  + L  +   
Sbjct: 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTDTRRRACTDFLKELKEK 391

Query: 119 KGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQK 178
               +                                 L  +  F     ++ S +   K
Sbjct: 392 NEVLVTNI-----------------------------FLAHMKGFVDQYMSDPSKNWKFK 422

Query: 179 D----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYSVSVCLPYLVASANWIL 231
           D     F  L   G +        +          +     L S ++    L   A   +
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482

Query: 232 GELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPL 291
               + L +    ++   L   LQ      T  Y V   AA  I  +L           +
Sbjct: 483 YTFRNQLTKAQLIELMPILATFLQ------TDEYVVYTYAAITIEKILTIRESNTSPAFI 536

Query: 292 LQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWP 351
                     E    +++  +L            + +   +  ++      + P      
Sbjct: 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-- 594

Query: 352 QVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPL 411
                    LA   +      +       +   +ES  A +       L     + +   
Sbjct: 595 --------LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTF 646

Query: 412 ECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLS 471
               S            + + ++  S         L++ LL                   
Sbjct: 647 LTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLL-------------APNVWE 693

Query: 472 VFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLS--EAILQYPSATW 529
           +   I  +  L     LK+FI               SI   +   L   + ++   +   
Sbjct: 694 LKGNIPAVTRL-----LKSFIKTD-----------SSIFPDLVPVLGIFQRLIASKAYEV 737

Query: 530 RACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCY 589
                +  ++       +   ++  +          R +  +     + K  V       
Sbjct: 738 HGFDLLEHIML----LIDMNRLRPYIKQIAV-LLLQRLQNSK-TERYVKKLTVFFGLISN 791

Query: 590 LCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLG 649
                 +   + + +DG F                P +    + K+A++ +  +V     
Sbjct: 792 KLGSDFLIHFIDEVQDGLFQQIWGNFIITTL----PTIGNLLDRKIALIGVLNMVINGQF 847

Query: 650 LGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGD 709
             +   +L+     S++E A          +  + D+ E       +        +   D
Sbjct: 848 FQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFD 907

Query: 710 ECEE 713
              E
Sbjct: 908 PLPE 911

PyMOL of d1wa5c_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		800
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.48
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.22
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.64
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.54
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.26
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.12
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.73
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.35
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.1
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.37
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.22
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.13
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	95.48
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	95.38
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.27
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.18
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.16
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.51
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.37
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	87.49

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=376.68  Aligned_cols=527  Identities=13%  Similarity=0.123  Sum_probs=391.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHCCCCCCHHHHHHHHHCH
Q ss_conf             323899999998400124675667899999999999975368331122--001999899975225557820184473599
Q 003723            2 PDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLV--SPHFSVLLDKAIFPALVLNEKDISEWEEDA   79 (800)
Q Consensus         2 p~il~~~l~~i~~~~~~~~~~~ls~~~~~~~l~fL~~~v~~~~~~kll--~p~l~~Ll~~vIfP~l~~teeD~Elwe~DP   79 (800)
                      +.+++.+++.+..    .......+.++..+++|+.++++.+.+++.+  .+++..++..+|+|+++++++|.+.|++||
T Consensus       286 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp  361 (959)
T d1wa5c_         286 NEFIQITWNLLTS----ISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP  361 (959)
T ss_dssp             HHHHHHHHHHHHH----CCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred             HHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH
T ss_conf             9999999999998----833555289999999999999851789988720467888999999988567877898775063


Q ss_pred             HHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHH
Q ss_conf             999997099822221064443114589999999997603899999998887422222224322246553312357--599
Q 003723           80 DEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LVL  157 (800)
Q Consensus        80 ~EYIr~~~d~~~~~~~g~~ed~~s~r~aA~~lL~~L~~~~~~~~~~~~~~~~a~~kr~k~~~~~~~~~~~~l~~i--~v~  157 (800)
                      ++|++++.+         .++.+++|.+|.+++..+                 ++++++.          ....+  ++.
T Consensus       362 ~~~~~~~~~---------~~~~~~~r~~a~~ll~~l-----------------~~~~~~~----------~~~~~~~~i~  405 (959)
T d1wa5c_         362 IEYIRRDLE---------GSDTDTRRRACTDFLKEL-----------------KEKNEVL----------VTNIFLAHMK  405 (959)
T ss_dssp             HHHHHHHHH---------C----CHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHHHH
T ss_pred             HHHHHHHHH---------HCCCCCHHHHHHHHHHHH-----------------HHHCCCC----------CHHHHHHHHH
T ss_conf             877787740---------000021778999999999-----------------9753411----------2688999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------HCCH--HHHHHHHHHHHHCCCC-CCCCCCHHHHHH
Q ss_conf             987129999898875562057798999999989888863------2222--3899899963310257-899740379999
Q 003723          158 PFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLRE------QKSE--FTANLVRSRVLPLYSV-SVCLPYLVASAN  228 (800)
Q Consensus       158 ~~L~~~~~~~~~~~~~~~~~k~kdgaL~~ig~La~~l~~------~~~~--~~e~fl~~~VlP~l~~-~s~~p~LrarA~  228 (800)
                      +.++.+...      ...+|+.+++++.++|+++.....      ....  -...++.++|.|++.. ..+++++|+|||
T Consensus       406 ~~~~~~~~~------~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~  479 (959)
T d1wa5c_         406 GFVDQYMSD------PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI  479 (959)
T ss_dssp             HHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred             HHHHHHCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             999751468------76216778899999999986312666655212304349999999999997368875099999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHH
Q ss_conf             999983305992119999999999630589999888641235999999842069-------------9995279999999
Q 003723          229 WILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-------------YMPPEWYPLLQVI  295 (800)
Q Consensus       229 ~~l~~f~~~~~~~~l~~v~~~il~~L~~~~~~~~~~lpVrv~AA~AL~~li~~~-------------~l~p~i~~llq~L  295 (800)
                      |++++|+....++.+.++++.++++|++++      .+||++||.|+.+++...             .+.|++.++++.|
T Consensus       480 ~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L  553 (959)
T d1wa5c_         480 KYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL  553 (959)
T ss_dssp             HHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf             999877741267889999999998727996------15899999999999986600332001032887775699999999


Q ss_pred             HHHHCCCC------CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99621433------132799999999999521221012999999999999986499999982368877999998787544
Q 003723          296 VGRIGYED------EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE  369 (800)
Q Consensus       296 l~~l~~e~------~e~e~L~~~L~~iV~~~~e~i~p~a~~l~~~L~~~f~~~~~~~~~~~~~~~~~~f~~la~~~~~~~  369 (800)
                      +..+....      .++++++.++.++++.+++.+.|++..+++.|...+.+...++.++  .+.++             
T Consensus       554 ~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~~~~-------------  618 (959)
T d1wa5c_         554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP--RFTHY-------------  618 (959)
T ss_dssp             HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH--HHHHH-------------
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHH-------------
T ss_conf             999986122025678899999999999998798888899999999999999985684236--78999-------------


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             34345554200563012226689999999999845312676654458993119989999899898720024788766999
Q 003723          370 NFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSE  449 (800)
Q Consensus       370 ~~~~d~~~d~~~~~~~~~~~~ail~ti~tiL~~~~~~p~~~~~~s~~~~~~~~~~le~~l~p~i~~i~~~~~~l~~~i~e  449 (800)
                                            +++++++++            ..  ..|+....+++.+.|++..+      ++++..+
T Consensus       619 ----------------------~~e~l~~l~------------~~--~~~~~~~~l~~~l~p~i~~~------~~~~~~~  656 (959)
T d1wa5c_         619 ----------------------TFESIGAIL------------NY--TQRQNLPLLVDSMMPTFLTV------FSEDIQE  656 (959)
T ss_dssp             ----------------------HHHHHHHHH------------HT--SCGGGHHHHHHHHHHHHHHH------HHTTCTT
T ss_pred             ----------------------HHHHHHHHH------------HH--CCCHHHHHHHHHHHHHHHHH------HHCCCHH
T ss_conf             ----------------------999999999------------84--28135999999999999999------8433164


Q ss_pred             HHHHHHHHH------------HHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999999999------------9669899961---0508855999963223232110101268888999997224999999
Q 003723          450 LLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIG  514 (800)
Q Consensus       450 f~~~~~~ll------------~~W~~~~~~~---~~~~~dy~~el~~~~~~~~L~Nfi~~g~~~~~~~~~~~~~i~~i~~  514 (800)
                      |++++++++            .+|..++.+.   .....+++..+..     .+++|+.+|++.+..    ...++.++.
T Consensus       657 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~----~~~~l~~~~  727 (959)
T d1wa5c_         657 FIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTR-----LLKSFIKTDSSIFPD----LVPVLGIFQ  727 (959)
T ss_dssp             THHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHH-----HHHHHHHHHGGGCSC----SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCHHHHCC----HHHHHHHHH
T ss_conf             78999999999987477866889999999863788877611899999-----999999728786446----287999999


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             986000124841467668999881-1999975211001131089999999998660689995116899999998321193
Q 003723          515 AFLSEAILQYPSATWRACSCVHTL-LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYP  593 (800)
Q Consensus       515 ~~~s~~~~~~~~~~~~~~~~~~~l-~~i~~~~~~~~~~~~~~~~~i~~~al~rL~~~~~~~~~~~~~li~vi~~~l~y~p  593 (800)
                      ..++....+  ......   +..+ .+.+.      ....++++.|+..+++|++. ..+....+..++.+...|++|+|
T Consensus       728 ~~l~~~~~~--~~~~~l---l~~ii~~~~~------~~~~~~l~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  795 (959)
T d1wa5c_         728 RLIASKAYE--VHGFDL---LEHIMLLIDM------NRLRPYIKQIAVLLLQRLQN-SKTERYVKKLTVFFGLISNKLGS  795 (959)
T ss_dssp             HHHTCTTTH--HHHHHH---HHHHHHHSCH------HHHGGGHHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHCCCCCH--HHHHHH---HHHHHHHCCH------HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCH
T ss_conf             987798306--899999---9999997851------44676899999999999870-46089999999999999987199


Q ss_pred             HHHHHHHHHCCC----C-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             899999980596----3-2999999998540289889875045678999999999862222798136689999999999
Q 003723          594 AVVEGILKKDED----G-GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLME  667 (800)
Q Consensus       594 ~~~l~~L~~~~~----~-ff~~W~~~~~~~~~~~~~~~~~~~~D~Kl~ilaL~sLl~~~p~l~~~~~~l~~~~~~~L~~  667 (800)
                      +.++++|++.+.    + +.+.|+...         +++.+.+|||++++|+++|++..+.+...+.+++..++..+.+
T Consensus       796 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~k~~~l~l~~ll~~~~~~~~~~~~~~~~~~~~l~~  865 (959)
T d1wa5c_         796 DFLIHFIDEVQDGLFQQIWGNFIITTL---------PTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIE  865 (959)
T ss_dssp             HHHHHHHHTTSTTHHHHHHHHTHHHHG---------GGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998432158999999997314---------1039999999999999998658861425799999999999998

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure