Citrus Sinensis ID: 003750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
Protein Sequence
MDGLADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHccccccccccccccccccccccccEEEcccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHccHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccHHHHHHHHHHHcccHHcccccccHcccccHHHHHHHcccccHHHHHHHHHHcHcccccccccccHccccEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHccccccccccccccccccccccccEccccccEEccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEEEEccccEEEEEccccccEEEcHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccEcccccccccccccccccEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdgladfssagSSLLWLWIIEYLASFKEVDTSILHDLietapeipddLAKVTREMVALRCLEdlfgssdkvnddglsctenKVGFALSESCEDVLQQILQETsasdlniagpellkwdvhpfimhkralmpkcaLQHLKDTILEGTHPLAaslketsgltcvsecgtarvgdldhnaqamsekenllpstcenrdgqprdnlhirnmlpfkrsrgdmAIRDVAahtngvqekcdlNYNAKKHKQDaisnhqsadqisvptcgketveplsgrdvavagregshfsnqsqdagleesqfpddgcdncddlrrlgqngdvnddqiqhnqaedghnaarlpraepvqnatvdeanitervpsvgtqhedtedesrgevehsceeetlsdndayhndridvavkkshflssqaalghdslatsgwteqnlcvkcnkdgqllscssstcplavhenclgfpvkfdekgnfhcpfcayTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLanklhskdpghsgsngdkdihengnvgeqennqenqngqhlhdVSDQLCQKHRAkkkkaeplhdvsdplcqrhsankkkaetsascvnanspcreeeanafsgrdcisngdKVVEenmdnycpserglegqpertppecgklactntyvepmddTEAEAKLQkedvqpassessdppespvialnideeeiseseddkfiisnysirfrrpkthytyppipqlrrkkvpwtAKEEEILKKGVQKfasvddriipwKKILEFgssvffsgrtaidlkdkwrnmckgsprsk
Flexible Loop (DISEMBL)
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
Low Complexity Region (SEG)
MDGLADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHengnvgeqennqenqngqHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQpassessdppespVIALNideeeiseseddkfiisNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
Disordered region (IsUnstruct)
***********SSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVG***********************************************IRDVAAHT**V***C****************************************************************************************************************************************************************RIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQM*******************************************************************************************************************************************************************************************************KFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM********
Disordered Region (DISOPRED)
*********A*SSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKV*****SCTENKVGFALSESCEDVLQQILQET********GPELLKWDVHPFIMHKRALMPKCALQHLKDTILE*****************************************************************************************************************************************************************************************************************************************************************************************LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYL****************MQ*********************************************************************************************************************************************************************************************PV**LNIDEEEISESEDDKFIISNYSIRFRRP**********QLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN**K******
Disordered Region (DISEMBL)
*********AGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAK****************SVPTCGKETVEPLSGRDVAVAGR*******************PDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVP************************TLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLH*********NGDKDIHENGNVGEQENNQENQNGQHLHDVSDQ**************LHDVSDPLCQR**************************NAFSGRDCISNGDKVVEENMDNYCPSE************ECGKLACTNTYVEPMDDTEAE*********************PVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
Disordered Region (DISPRO)
********SAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSS*********CTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENR********H*RNMLPFKRSRGDMA*RDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVA*R***********************CDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSV****************H*C*EETLSDNDAYHNDRIDVAVKKSHFLS********SL*TSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLAN**********************************************************************************************************************************************************************************************************SIR*RRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGLADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	798
224139856	827	predicted protein [Populus trichocarpa]	0.936	0.903	0.434	1e-155
255571552	814	conserved hypothetical protein [Ricinus	0.934	0.916	0.414	1e-146
297739691	774	unnamed protein product [Vitis vinifera]	0.694	0.715	0.366	1e-94
147846688	774	hypothetical protein VITISV_016915 [Viti	0.694	0.715	0.366	1e-94
224087048	575	predicted protein [Populus trichocarpa]	0.464	0.645	0.434	3e-67
357445323	473	PHD finger protein 21A [Medicago truncat	0.533	0.900	0.358	6e-57
449437938	562	PREDICTED: uncharacterized protein LOC10	0.208	0.295	0.479	1e-33
62733346	932	hypothetical protein [Oryza sativa Japon	0.434	0.372	0.294	3e-29
413935052	942	putative homeodomain-like transcription	0.417	0.353	0.287	1e-26
413935053	938	putative homeodomain-like transcription	0.417	0.355	0.287	2e-26

>gi|224139856|ref|XP_002323310.1| predicted protein [Populus trichocarpa] gi|222867940|gb|EEF05071.1| predicted protein [Populus trichocarpa]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 373/858 (43%), Positives = 484/858 (56%), Gaps = 111/858 (12%)

Query: 4   LADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLED 63
           + D SS+ ++L WLW+IEYLASF++++ SILH+LIE APEIPDDL K TREMVALRCLED
Sbjct: 18  MDDPSSSATTLAWLWVIEYLASFRQIEPSILHELIEAAPEIPDDLGKNTREMVALRCLED 77

Query: 64  LFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFI 123
           LF  SD    + ++  E KV F LSESCEDVLQ ILQETS SDLN  GPELLKWD+HPFI
Sbjct: 78  LFCRSDNGIANDVTSKELKVTFDLSESCEDVLQSILQETSVSDLNRGGPELLKWDIHPFI 137

Query: 124 MHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECG-------------TARV 170
           MHKRA MPKCAL+ +KD ILEG HP  ASLKE S L   ++ G               R+
Sbjct: 138 MHKRACMPKCALEKVKDAILEGIHPY-ASLKEYSELVNANDRGNRITTDYGDDGAPVGRI 196

Query: 171 GDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAA--HTNG 228
           G  D + Q    +E+ +P   EN +    DN + RN+L F+R R   A +++A      G
Sbjct: 197 GGSDTDGQINPPEESSIPLLHEN-ENVVEDNSYNRNLLHFERERSGSASQNLAGDHEDQG 255

Query: 229 VQEKCDLNYNAKKHKQDAISNHQSADQI-SVPTCGKETVEPLSGRDVAVAGREGSHFSNQ 287
             +   L   AK+ K+DA+ ++ S  QI S P   K+ VE      V  +     H   +
Sbjct: 256 CVDGDHLQPQAKRFKEDALHDNLSMGQISSTPPQHKDMVEDSFEMVVEDSENRDFHLEKE 315

Query: 288 SQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPV--QN 345
           S   GLE S   ++  D    + R G + D  D+  QHNQ E  HNA ++P +     Q 
Sbjct: 316 SSQGGLEGSIPVENDHDEDVGIDRHGHSLDA-DNAFQHNQHEIAHNANKMPLSGDGLHQY 374

Query: 346 ATVDEANITE-----RVPSVGTQHEDTEDESRGEVEHSCEEE---TLSDN------DA-- 389
           + VDE N  E       PSVGT      + ++G+ +HS +++   ++S N      DA  
Sbjct: 375 SFVDEINRAEPRKSNAAPSVGTSDRLFVNGNKGKSDHSGQQKPSNSVSSNGFHRNTDADE 434

Query: 390 -------------------YHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKC 430
                              Y  +R+DV ++KSHFLSSQ  L HDSLA + WT+QNLC+KC
Sbjct: 435 REAGTDHLSEEDESNESDEYEQERVDVGLRKSHFLSSQYMLSHDSLAEANWTDQNLCIKC 494

Query: 431 NKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVAR 490
            KDGQLL C + +C L +HENCL F   FDE+G+F+CPFCAY+L+ISEYLEAKK+A  AR
Sbjct: 495 CKDGQLLVCGAGSCSLVIHENCLVFSPHFDERGDFYCPFCAYSLAISEYLEAKKKAYSAR 554

Query: 491 KELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDI------HENGNVGEQENNQENQ 544
           KEL  F++            +L SK  G S  N DKD+      +EN  VGE+   Q N 
Sbjct: 555 KELKLFIETRQEYRSNKHTQRLLSKRHGSSRQNEDKDLLNKFLDYENL-VGEKR-KQSNN 612

Query: 545 NGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREE 604
            GQ + + +D   QK + KKK+ EPL                     ASC+  NS CREE
Sbjct: 613 RGQ-ISEGNDHQFQKGKGKKKQVEPL---------------------ASCIGVNSLCREE 650

Query: 605 EANAFSGRDCISN----GDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPM 660
           E +     + IS     G++VV+EN      +E  +        P   K +  N      
Sbjct: 651 EPDVNVRTNHISTVEKEGEEVVQENSSG---TELDINQHQVSVDP---KYSVDNHLC--- 701

Query: 661 DDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRPK 720
                    +++++   S  +    +  V A++ D  E S  EDDK I +NY IRFR+ +
Sbjct: 702 ---------KEKEIVSGSQRTDGRRQKAVCAISSDGGETSGDEDDKSISTNYFIRFRKRE 752

Query: 721 THYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTA 780
             YT P +PQ RRKKVPWTA EEEILK+GVQKFAS  D   PWK ILE+GSSVF +GRT 
Sbjct: 753 RQYT-PAMPQSRRKKVPWTAHEEEILKEGVQKFAS--DGKYPWKDILEYGSSVFSNGRTT 809

Query: 781 IDLKDKWRNMCKGSPRSK 798
           IDLKDKWRNMCK SP+SK
Sbjct: 810 IDLKDKWRNMCKLSPKSK 827

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571552|ref|XP_002526722.1| conserved hypothetical protein [Ricinus communis] gi|223533911|gb|EEF35636.1| conserved hypothetical protein [Ricinus communis]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 356/859 (41%), Positives = 478/859 (55%), Gaps = 113/859 (13%)

Query: 4   LADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLED 63
           +AD  SA S + WLW IEYLASFK++D SILHDLI+ APE+P+DL K TREMVAL+CLE 
Sbjct: 1   MADTCSADSGVAWLWAIEYLASFKQIDPSILHDLIDEAPELPEDLGKNTREMVALKCLEH 60

Query: 64  LF-GSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPF 122
           LF  ++++  +D  S    K+ F L+E+CEDVLQ IL+E S SDL +AGP+LLKWDV PF
Sbjct: 61  LFTNNTNEAPNDAPSVPNQKITFDLNEACEDVLQSILKEMSVSDLKMAGPDLLKWDVPPF 120

Query: 123 IMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLT--------CVSECGTARVGDLD 174
           I+HKRA MPKCAL+ LKD ILEGTHP AA   E SGL             CGT   G   
Sbjct: 121 ILHKRASMPKCALEQLKDAILEGTHPYAAFFGELSGLVHKNDENNRITVSCGTDSNGT-- 178

Query: 175 HNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDM----AIRDVAAHTNGVQ 230
            +AQ M+ + N +    EN +   RD+  ++N+LP KR+  D+       D      G+ 
Sbjct: 179 -DAQIMAPEGNNIHLPLENMNRMVRDDSCLKNLLPLKRNGNDLDNEHPSGDYQEDQGGMD 237

Query: 231 EKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQD 290
           E  DL  NAKK K +A    +S +QI +     E VE  S   V  A +E  H    +Q 
Sbjct: 238 ES-DLLLNAKKFKTNASCAKKSREQILISQPCNELVEDSSRMMVGDAQKESCHVERVAQ- 295

Query: 291 AGLEESQFPDDGCDNCDDLRRLGQ--NGDVNDDQIQH--------NQAE----DGHNAAR 336
            GL E     +G        RLG     D N+ Q  H        N++E    DG +   
Sbjct: 296 IGLGECCSFGNGHGKFVATERLGGIPTADANNFQNNHSDRVNNANNKSEGTFGDGSHQCI 355

Query: 337 L--------PRAE--------PVQNATVDEANITE-----RVPSV----GTQHEDTEDES 371
           L        PRA         P + +  D  N  +     R P V    G     T ++S
Sbjct: 356 LDDEVNKAEPRASNGASSLRTPQEVSADDNKNNHDYGSQLRSPQVVSLSGFPRGTTVEKS 415

Query: 372 RGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCN 431
            G +E+  +E+T S++  YH++ IDVA++KSHFLSSQ  L H S   S WTE NLCV+C+
Sbjct: 416 EGGIENLYQEDTSSESGGYHHEMIDVAMEKSHFLSSQCTLSHAS--PSNWTELNLCVQCS 473

Query: 432 KDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARK 491
           KDGQLL C++  CP  VHE CLG   KFDEKGNF+CPFCAY+ +IS+YLEAKK A++ARK
Sbjct: 474 KDGQLLVCNAVGCPFVVHEKCLGCSPKFDEKGNFYCPFCAYSYAISKYLEAKKTATLARK 533

Query: 492 ELAAFM-QMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLH 550
           EL+AF+ +     H   L+N  H++D  +        IHE  ++GE+ ++++N       
Sbjct: 534 ELSAFIHKRPERSHLQKLSNLGHNEDEDNICK-----IHETADLGERGSDKKND------ 582

Query: 551 DVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFS 610
                   K RA          + +   ++   +++  E   SC++ N  CRE+      
Sbjct: 583 --------KVRAC---------IINGQVEKRIGDRQPEEPMLSCIDVNVMCREQLGATHG 625

Query: 611 GRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVE-PM--------- 660
                S  ++   E M       RGL+ + + +       A   T+ + PM         
Sbjct: 626 ITHIASEANE--SEEMSPKSSFARGLDREDQTS-------AGLKTHGDNPMSKDKEMFSS 676

Query: 661 DDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRP- 719
           +  EAE + +KE ++    +SSD  E PV A N+DE E S+ E D+ ++S+YSIR RR  
Sbjct: 677 NKEEAEGRFEKEVLE---QQSSDVLEKPVCAGNVDEGETSDDESDENMMSDYSIRLRRRR 733

Query: 720 --KTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSG 777
             +  Y YP  PQ RRKKVPWTAKEEEILK+GVQKF+++ DR I WKKILE+GS+VF   
Sbjct: 734 MREIQYAYPATPQFRRKKVPWTAKEEEILKEGVQKFSNISDRTISWKKILEYGSAVFLHD 793

Query: 778 RTAIDLKDKWRNMCKGSPR 796
           RT  DLKDKWRN+CKGSP+
Sbjct: 794 RTTTDLKDKWRNICKGSPK 812

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739691|emb|CBI29873.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 241/657 (36%), Positives = 345/657 (52%), Gaps = 103/657 (15%)

Query: 4   LADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLED 63
           +A+ S + SSL WLW++E LASF+ VD S+L DL+  APE+ D+L +  +EM+ALRCLE 
Sbjct: 1   MAEKSCSVSSLPWLWVMETLASFERVDISLLKDLMIKAPEVSDNLGRNVKEMIALRCLEA 60

Query: 64  LFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFI 123
           LF     + +D      +K+GF  SESCEDVLQ IL++ SAS L +  PELLKW+V+PFI
Sbjct: 61  LFSG---ITNDVHPVVHSKMGFDPSESCEDVLQCILRKVSASKLRMGEPELLKWNVNPFI 117

Query: 124 MHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARV-GDLDHNA----- 177
            HKRA +PKCALQ LKDTILEG+HP A SLKE SGL   S+C T    GD D  A     
Sbjct: 118 AHKRACLPKCALQELKDTILEGSHPSAVSLKERSGLRFESQCETRTPNGDGDSGAVAPRV 177

Query: 178 -------QAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTN--- 227
                  Q  + K +L+P T EN +    ++   R +LP+KR   D+  +++    N   
Sbjct: 178 DEGTACGQVEAAKGDLIPLTAENENNLLPEDTTERILLPYKRGLDDLPAKNLMGQFNPNV 237

Query: 228 -GVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSN 286
             V    D + NAK+ K DA  +  S +   V   GK+ +E     D +         + 
Sbjct: 238 DSVNYGGDSHSNAKRRKHDAFCSITSIEPNPVSLHGKKLLE-----DSSRPSINECDLAK 292

Query: 287 QSQDAGLEESQF-PDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAAR----LPRAE 341
           +SQ   LE S    +D  D     +R+ Q  DV   + +HNQ +   ++ +    +PR E
Sbjct: 293 ESQLGDLEGSTMVSEDDHDKYVVSKRVEQITDVEHGEFEHNQTQIPFHSNKMPQNMPRDE 352

Query: 342 PVQNATVDEA------NITERVPSVG---------------------------------- 361
              + +VDEA      +  E   S+G                                  
Sbjct: 353 SHHDISVDEAKDDDVEHWVEPNKSIGAASDGSQQKTAVDEAKDDGDCRVEPNKSSGSSDE 412

Query: 362 TQHEDTEDESRGEVEHSCEEETLSD---NDAYHNDRID---------------------- 396
           +Q +++ DE++ + +HS + +  +D   N+A+H   +D                      
Sbjct: 413 SQKKNSVDEAKDDGDHSSQPKASNDKLPNEAHHKVFVDEAKDDTEHCCEEEMLSDSTEYH 472

Query: 397 -----VAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHEN 451
                +A+++ +FLSS+    HDSL+ +GWTEQNLC+KC KDGQLL CSSS CPL VHEN
Sbjct: 473 DEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSSSGCPLVVHEN 532

Query: 452 CLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANK 511
           CLG P  FD  GNF+CPFCAY+ ++SEYLE+KK+ S+A+KELA+F+  G     +    K
Sbjct: 533 CLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINAGMKHEPVKPKKK 592

Query: 512 LHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAE 568
              K+   + S     + ENG+V E+   + N        V+DQL +++  K    E
Sbjct: 593 HRKKNEKLNESANLVKVCENGHVKEKRQTRANHGDAQ---VTDQLIRRNVEKHDGVE 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846688|emb|CAN80644.1| hypothetical protein VITISV_016915 [Vitis vinifera]

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 241/657 (36%), Positives = 345/657 (52%), Gaps = 103/657 (15%)

Query: 4   LADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLED 63
           +A+ S + SSL WLW++E LASF+ VD S+L DL+  APE+ D+L +  +EM+ALRCLE 
Sbjct: 1   MAEKSCSVSSLPWLWVMETLASFERVDISLLKDLMIKAPEVSDNLGRNVKEMIALRCLEA 60

Query: 64  LFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFI 123
           LF     + +D      +K+GF  SESCEDVLQ IL++ SAS L +  PELLKW+V+PFI
Sbjct: 61  LFSG---ITNDVHPVVHSKMGFDPSESCEDVLQCILRKVSASKLRMGEPELLKWNVNPFI 117

Query: 124 MHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARV-GDLDHNA----- 177
            HKRA +PKCALQ LKDTILEG+HP A SLKE SGL   S+C T    GD D  A     
Sbjct: 118 AHKRACLPKCALQELKDTILEGSHPSAXSLKERSGLRFESQCETRTPNGDGDSGAVAPRV 177

Query: 178 -------QAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTN--- 227
                  Q  + K +L+P T EN +    ++   R +LP+KR   D+  +++    N   
Sbjct: 178 DEGTACGQVEAAKGDLIPLTAENENNLLPEDTTERILLPYKRGLDDLPAKNLMGQFNPNV 237

Query: 228 -GVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSN 286
             V    D + NAK+ K DA  +  S +   V   GK+ +E     D +         + 
Sbjct: 238 DSVNYGGDSHSNAKRRKHDAFCSITSIEPNPVSLHGKKLLE-----DSSRPSINECDLAK 292

Query: 287 QSQDAGLEESQF-PDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAAR----LPRAE 341
           +SQ   LE S    +D  D     +R+ Q  DV   + +HNQ +   ++ +    +PR E
Sbjct: 293 ESQLGDLEGSTMVSEDDHDKYVVSKRVEQITDVEHGEFEHNQTQIPFHSNKMPQNMPRDE 352

Query: 342 PVQNATVDEA------NITERVPSVG---------------------------------- 361
              + +VDEA      +  E   S+G                                  
Sbjct: 353 SHHDISVDEAKDDDVEHWVEPNKSIGAASDGSQQKTAVDEAKDDGDCRVEPNKSSGSSDE 412

Query: 362 TQHEDTEDESRGEVEHSCEEETLSD---NDAYHNDRID---------------------- 396
           +Q +++ DE++ + +HS + +  +D   N+A+H   +D                      
Sbjct: 413 SQKKNSVDEAKDDGDHSSQPKASNDKLPNEAHHKVFVDEAKDDTEHCCEEEMLSDSTEYH 472

Query: 397 -----VAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHEN 451
                +A+++ +FLSS+    HDSL+ +GWTEQNLC+KC KDGQLL CSSS CPL VHEN
Sbjct: 473 DEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSSSGCPLVVHEN 532

Query: 452 CLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANK 511
           CLG P  FD  GNF+CPFCAY+ ++SEYLE+KK+ S+A+KELA+F+  G     +    K
Sbjct: 533 CLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINAGMKHEPVKPKKK 592

Query: 512 LHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAE 568
              K+   + S     + ENG+V E+   + N        V+DQL +++  K    E
Sbjct: 593 HRKKNEKLNESANLVKVCENGHVKEKRQTRANHGDAQ---VTDQLIRRNVEKHDGVE 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087048|ref|XP_002308044.1| predicted protein [Populus trichocarpa] gi|222854020|gb|EEE91567.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 171/394 (43%), Positives = 227/394 (57%), Gaps = 23/394 (5%)

Query: 1   MDGLADFSSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRC 60
           M  + D SS+ ++L W W+IEYLASF E++ SILHDLIE AP+IP+DL K TRE+ ALRC
Sbjct: 1   MAWMDDPSSSATTLAWHWVIEYLASFPEIEASILHDLIEAAPKIPEDLRKNTREIAALRC 60

Query: 61  LEDLFGSSDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVH 120
           LED F  ++ + +D +   E KV F LSESCEDVLQ ILQETS SDL  AGP  LKWD H
Sbjct: 61  LEDFFCHNNGITND-VPSKEPKVTFDLSESCEDVLQSILQETSVSDLKRAGPGRLKWDTH 119

Query: 121 PFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTA----RVGDLDHN 176
           PFIMHKRA MPKCAL+ +KD ILEG HP  ASLKE SGL   ++        R+     +
Sbjct: 120 PFIMHKRAFMPKCALEKVKDAILEGIHPY-ASLKEYSGLVDANDGDLGAPAWRIDGSGTD 178

Query: 177 AQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHT---NGVQEKC 233
            Q  + +EN +P     R  +  D+   RN L FKR R   A  ++A      N V +  
Sbjct: 179 GQINAPEENSIPL----RGIEVEDDSCNRNSLHFKRDRSGSANENLAGDLEDQNCVDDGD 234

Query: 234 DLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGL 293
            L+  AK+ KQDA  ++QS + IS      E VE    R    +  +  H   ++   GL
Sbjct: 235 HLHPQAKRFKQDAFCDYQSLEHISTLQQHMEMVEDSIQRVTGDSENKDCHMEEKTSQGGL 294

Query: 294 EESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQN----ATVD 349
           EES+  ++G D C  + R G++ D  D+  QHNQ E  HNA ++P+          + VD
Sbjct: 295 EESRSVENGHDECVGMDRHGKSLDP-DNAFQHNQHEIAHNANKIPQDISGNGLHLYSLVD 353

Query: 350 EAN-----ITERVPSVGTQHEDTEDESRGEVEHS 378
           E N     I+   PSVGT ++   +E++   +HS
Sbjct: 354 EINCAEPRISNTAPSVGTPNKFFVNENKDNSDHS 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445323|ref|XP_003592939.1| PHD finger protein 21A [Medicago truncatula] gi|355481987|gb|AES63190.1| PHD finger protein 21A [Medicago truncatula]

 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 250/499 (50%), Gaps = 73/499 (14%)

Query: 12  SSLLWLW--IIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSD 69
           SSL+  W  +IE LA FKE+    L  LI+ +     D ++ T++++AL+CLE+L+ SS 
Sbjct: 5   SSLVLPWHCVIEALAGFKEITLPTLQALIDASLLTHHDFSETTKDLIALKCLEELYPSSS 64

Query: 70  KVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRAL 129
                    T  ++  +LS   +DVL QIL + S S+L  +GPEL KWDV+ FI HKRA 
Sbjct: 65  SSTT-----TLEELDSSLSS--QDVLLQILHQVSLSNLRTSGPELFKWDVNRFIAHKRAD 117

Query: 130 MPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPS 189
             KC L+ LK++IL+GT PL   LKE SGL   +   T +       AQ   EKEN +  
Sbjct: 118 NVKCQLEKLKESILDGTLPLNDHLKERSGLFQTNRAHTGKCYGYSTYAQDSGEKENSVSL 177

Query: 190 TCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISN 249
                   P DN    N L  KR+R            +  + + DL+       Q  +S+
Sbjct: 178 I-------PEDN----NCLSSKRNRV----------YSANEHEPDLHLKGSNLSQKTVSS 216

Query: 250 HQSADQISVPTCGKETVEPLSGRDVAVAGREGSH---FSNQSQDAGLEESQFPDDGCDNC 306
            +S D  SV  C  E +  +  R      ++ SH   F+  SQ    E +  P    ++C
Sbjct: 217 DKSQDDTSVYQC--ENLNLVMKRR-----KKDSHDKKFNKGSQLLVSEATSVPLLVPESC 269

Query: 307 DDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGT---- 362
                    G + +   +H               EP +N  +DEAN T  V  + T    
Sbjct: 270 I--------GMLTNIYPRHTSG-----------VEPCRNKLIDEANDTVHVEPIPTNDDG 310

Query: 363 --------QHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHD 414
                   Q     D++  +  + C  E  SD+D Y+N++ID+   K+ FLSSQ A G D
Sbjct: 311 NADKVQARQKPAASDKAVVDTVNDCGAELSSDSDVYYNEKIDLTAIKAEFLSSQHASGQD 370

Query: 415 SLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474
             A +    QNLC KCN+ GQLL C+  TCPL +H+NCLG   + + KGNF CPFC Y+ 
Sbjct: 371 LPAMTESRGQNLCSKCNEAGQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSH 428

Query: 475 SISEYLEAKKRASVARKEL 493
           +ISEYLEAKK +S ARKEL
Sbjct: 429 AISEYLEAKKISSSARKEL 447

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437938|ref|XP_004136747.1| PREDICTED: uncharacterized protein LOC101206592 [Cucumis sativus]

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 8   SSAGSSLLWLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGS 67
           S++ S+L W W IE LASF +V  S+LHD+I TA E+ D       EMVAL+CLE LF  
Sbjct: 7   SASSSALAWRWTIEALASFDQVKPSLLHDVINTASELLDGKRNNAGEMVALKCLEGLFRP 66

Query: 68  SDKVNDDGLSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKR 127
            D + ++     E+KV F  SESC DV+++I  ET  S L +AGP++LKWDV PFI  KR
Sbjct: 67  LDDIGENSRPAQESKVMFDSSESCLDVVKRIYNETPKSALGVAGPDMLKWDVKPFIDQKR 126

Query: 128 ALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLD 174
           A M +C L  LKD+IL+GTHP A  L + SGLT +++     + ++D
Sbjct: 127 ASM-RCTLLQLKDSILDGTHPYADFLMQKSGLTPINKKDGTSLNNVD 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62733346|gb|AAX95463.1| hypothetical protein [Oryza sativa Japonica Group]

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 170/384 (44%), Gaps = 37/384 (9%)

Query: 420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEY 479
           G +EQ+LC+KC KDGQLL CSS  C LA H+ C G     D+ G  +CP C YT +   Y
Sbjct: 575 GLSEQDLCIKCGKDGQLLKCSS--CLLAAHDTCFGSLATLDDSGQLYCPVCFYTKATEAY 632

Query: 480 LEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQEN 539
            +AKK  S ARK L+AF+       +  LA +      G   +N +  ++   +  ++++
Sbjct: 633 QKAKKTYSEARKNLSAFL------GRKQLAEQHQQAAVGQRAANNEDHLNGCNDASKRKD 686

Query: 540 NQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANS 599
           N +++     H   D        +K+K +  +  SD  C +    +K     A       
Sbjct: 687 NHQSEGNNLSHRDEDP------TRKRKKQKTNATSD-ACAQEVVTEKNNRKQAQVAEHEQ 739

Query: 600 PCREEEANAFSGRD---------CISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKL 650
           P   EEA+  SG D           +     V +N+D     E GL    +    +  ++
Sbjct: 740 PEENEEASGESGNDNSLHKTTHSSQTKCSPAVNQNVD--ADKENGLASSQQSE--DSDEI 795

Query: 651 ACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIIS 710
             T++       +    KL+         +++ P  S  +  N D+   S S        
Sbjct: 796 EATSSNDSTKKSSPPWRKLRHRKAIYQDKDTAMPSNSKKVLGNRDQHMASPSRK-----R 850

Query: 711 NYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFG 770
           NY+     P   Y+ P +P  RR K+ WT KEE  L++ + KF   D+  IPW +ILE G
Sbjct: 851 NYAC----PPKRYSNPIVPAGRRTKLCWTEKEEITLREAMAKFTPRDNGPIPWVQILEHG 906

Query: 771 SSVFFSGRTAIDLKDKWRNMCKGS 794
             VF   R   DL+ KWRNM K S
Sbjct: 907 RDVFHRTRLPSDLRVKWRNMKKKS 930

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935052|gb|AFW69603.1| putative homeodomain-like transcription factor superfamily protein [Zea mays]

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 169/383 (44%), Gaps = 50/383 (13%)

Query: 420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEY 479
           G ++Q+LC+KC K GQLL CSS  C LA H +C G  V F+E   F+CP C Y  +   Y
Sbjct: 586 GLSQQDLCIKCGKVGQLLECSS--CSLAAHNSCFGSSVTFEETNLFYCPVCFYKRATEAY 643

Query: 480 LEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSG----SNGDKDIHEN--GN 533
            +AKK    ARK +AAF+    V  Q +   +L+   PG +     S+  K  HEN   N
Sbjct: 644 KKAKKTYGEARKNVAAFLGTIQVTKQHN--EQLNGVQPGGANREDHSDTSKRTHENEVYN 701

Query: 534 VGEQ-ENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSA 592
           +  Q E   +    Q ++ +     ++   +K    P  +       +HS  +   +T  
Sbjct: 702 LAHQDEEPHQQMKKQKINAIGIDYRKEVLTEKV---PFQNSGPASINKHSVLQNNGKT-- 756

Query: 593 SCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPP-----EC 647
                  P ++++A           GD+   +   N    E G   Q    PP     E 
Sbjct: 757 ---RVKDPEKKQQA-----------GDEEARKEAGNEKSHETGASSQRRCDPPSNHDVEA 802

Query: 648 GKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKF 707
            +     T ++     E EAK  +E     SS+S          ++  ++ +  S   + 
Sbjct: 803 DQEGSLTTSIQSSGSDELEAKGLQEKKAAVSSKSRK-------GISKRDQHMPTSPRKR- 854

Query: 708 IISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKIL 767
                S+  ++    Y+ P  P  RRKK+ WT +EE +L++G+ KF   ++  IPW  IL
Sbjct: 855 ----NSVHLQK---RYSNPLAPPGRRKKLFWTEEEEAVLREGMAKFTPQNNAQIPWILIL 907

Query: 768 EFGSSVFFSGRTAIDLKDKWRNM 790
           E G  VF   R   DL+ KWR+M
Sbjct: 908 EHGRGVFHRTRLPSDLRVKWRSM 930

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935053|gb|AFW69604.1| putative homeodomain-like transcription factor superfamily protein [Zea mays]

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 169/383 (44%), Gaps = 50/383 (13%)

Query: 420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEY 479
           G ++Q+LC+KC K GQLL CSS  C LA H +C G  V F+E   F+CP C Y  +   Y
Sbjct: 586 GLSQQDLCIKCGKVGQLLECSS--CSLAAHNSCFGSSVTFEETNLFYCPVCFYKRATEAY 643

Query: 480 LEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSG----SNGDKDIHEN--GN 533
            +AKK    ARK +AAF+    V  Q +   +L+   PG +     S+  K  HEN   N
Sbjct: 644 KKAKKTYGEARKNVAAFLGTIQVTKQHN--EQLNGVQPGGANREDHSDTSKRTHENEVYN 701

Query: 534 VGEQ-ENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSA 592
           +  Q E   +    Q ++ +     ++   +K    P  +       +HS  +   +T  
Sbjct: 702 LAHQDEEPHQQMKKQKINAIGIDYRKEVLTEKV---PFQNSGPASINKHSVLQNNGKT-- 756

Query: 593 SCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPP-----EC 647
                  P ++++A           GD+   +   N    E G   Q    PP     E 
Sbjct: 757 ---RVKDPEKKQQA-----------GDEEARKEAGNEKSHETGASSQRRCDPPSNHDVEA 802

Query: 648 GKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKF 707
            +     T ++     E EAK  +E     SS+S          ++  ++ +  S   + 
Sbjct: 803 DQEGSLTTSIQSSGSDELEAKGLQEKKAAVSSKSRK-------GISKRDQHMPTSPRKR- 854

Query: 708 IISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKIL 767
                S+  ++    Y+ P  P  RRKK+ WT +EE +L++G+ KF   ++  IPW  IL
Sbjct: 855 ----NSVHLQK---RYSNPLAPPGRRKKLFWTEEEEAVLREGMAKFTPQNNAQIPWILIL 907

Query: 768 EFGSSVFFSGRTAIDLKDKWRNM 790
           E G  VF   R   DL+ KWR+M
Sbjct: 908 EHGRGVFHRTRLPSDLRVKWRSM 930

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	798
TAIR|locus:2200201	314	AT1G68030 [Arabidopsis thalian	0.149	0.378	0.479	3.1e-40
TAIR|locus:2006792	429	AT1G14770 [Arabidopsis thalian	0.194	0.361	0.396	3.4e-33
TAIR|locus:2035372	345	AT1G01150 [Arabidopsis thalian	0.071	0.165	0.526	1.2e-18
TAIR|locus:2144568	420	TRFL10 "TRF-like 10" [Arabidop	0.076	0.145	0.540	1.2e-12
TAIR|locus:2135743	499	AT4G12670 [Arabidopsis thalian	0.073	0.118	0.508	7e-07
UNIPROTKB|Q6T804	426	AID1 "ANTHER INDEHISCENCE1" [O	0.068	0.129	0.491	2.5e-05
TAIR|locus:2161233	448	AT5G58340 [Arabidopsis thalian	0.072	0.129	0.4	3.6e-05
UNIPROTKB|E1BV70	657	LOC769405 "Uncharacterized pro	0.315	0.383	0.248	0.00028
UNIPROTKB|F1NCJ0	345	TERF1 "Uncharacterized protein	0.070	0.162	0.430	0.00045
UNIPROTKB|F1NEJ5	354	TERF1 "Uncharacterized protein	0.070	0.158	0.430	0.00048

TAIR|locus:2200201 AT1G68030 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
 Identities = 58/121 (47%), Positives = 75/121 (61%)

Query:    16 WLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRCLEDLFGSSDKVNDDG 75
             W+WIIEY A FK  +  +L+D+ E AP++PD L + T EMVA RCL  LF  S  V+   
Sbjct:    23 WIWIIEYFAKFK-TELWMLNDVFELAPKLPDYLGEYTNEMVAFRCLASLF-DSHVVSVTT 80

Query:    76 LSCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCAL 135
              + T + + F  SESCE VLQ IL E   S+L    P L KW++ PFI HK   +PKCAL
Sbjct:    81 TTTTTSMIEFDSSESCEYVLQCILDEIPLSELKPGAPGLTKWNLQPFIKHKLLSLPKCAL 140

Query:   136 Q 136
             +
Sbjct:   141 E 141

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2006792 AT1G14770 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
 Identities = 63/159 (39%), Positives = 89/159 (55%)

Query:     2 DGLADFSSAGSSLL-WLWIIEYLASFKEVDTSILHDLIETAPEIPDDLAKVTREMVALRC 60
             D + ++SS  + +  WLW IEY+A F + D S L DL+    +  DD  K   E+++LR 
Sbjct:    13 DLMDEYSSRPAQIAEWLWCIEYVAKFVK-DLSCLLDLMNIGYQYSDDYGKRINEVLSLRV 71

Query:    61 LEDLFGSS-DKVNDDGL-SCTENKVGFALSESCEDVLQQILQETSASDLNIAGPELLKWD 118
             LE +F  S    N  G+ S  E KV F LS S  DVL+ IL+E   ++L +  PEL K++
Sbjct:    72 LEFMFDPSMSDANGVGVASALEEKVEFDLSLSNADVLRGILKEIPVAELRVGMPELSKFN 131

Query:   119 VHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETS 157
             V PFI HK   +P+CAL+ L+D  L      A    ET+
Sbjct:   132 VLPFIAHKNLCLPQCALEKLRDVSLMENQTSATPFMETN 170

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035372 AT1G01150 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query:   734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790
             K+V WT  EE++L++GV+KF+   ++ +PWKKILE G  +F + R + DLKDKWRNM
Sbjct:   233 KRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 289

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2144568 TRFL10 "TRF-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query:   732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
             +R+++ WT +EEE+LK GV+KFA+  ++ +PW+KILE G  VF   RT  DLKDKWR+M 
Sbjct:   344 QRRRLLWTYEEEEMLKVGVEKFAAEANKNMPWRKILEMGEKVFHETRTPADLKDKWRSMV 403

Query:   792 K 792
             K
Sbjct:   404 K 404

GO:0003677 "DNA binding" evidence=IEA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2135743 AT4G12670 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:   732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
             +RK+  WT  E E+L+ GVQKF    +R IPW+KIL+FG  VF   R   DLKDKW+ + 
Sbjct:   414 KRKRRFWTLAEVEMLRVGVQKFPG--ERNIPWRKILQFGRDVFHDERAPSDLKDKWKTLN 471

Query:   792 K 792
             K
Sbjct:   472 K 472

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q6T804 AID1 "ANTHER INDEHISCENCE1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query:   732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
             RRK   W A EEE L+KGV+++ + +     WK IL     VF  GR A+DLKDKWRNM 
Sbjct:   372 RRKARKWCALEEETLRKGVEQYGNGN-----WKDILTNNPDVFI-GRKAMDLKDKWRNMM 425

Query:   792 K 792
             +
Sbjct:   426 R 426

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

TAIR|locus:2161233 AT5G58340 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query:   729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWR 788
             P +RR K  W  +E E L++GV+++         WK I   G+   F+ RT +DLKDKWR
Sbjct:   391 PHVRRPKKFWKPEEVEALREGVKEYGK------SWKDIKN-GNPTVFAERTEVDLKDKWR 443

Query:   789 NMCKG 793
             N+  G
Sbjct:   444 NLVGG 448

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BV70 LOC769405 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 126 (49.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 70/282 (24%), Positives = 114/282 (40%)

Query:   151 ASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENL-LPSTCENRDGQPRDNLHIRNMLP 209
             A ++E  G    SE   A   D D  + + S++EN    S     D +  D         
Sbjct:     2 ADMEELFGSDADSE---AEQKDTDSGSDSDSDQENAGSGSNASGSDSEQDDEREAAKPSN 58

Query:   210 FKRSRGDMAIRDVAAHTNGVQEKCDLNYN---AKKHKQDAISNHQSADQISVPTCGKETV 266
              K   GD +  + A+H  G     + +YN   A  H +   ++    DQ S      +  
Sbjct:    59 -KELFGDDSEDEGASHHTGSDNHSERSYNRSEASGHSEHEDNDQSDVDQHSASEAAHDDE 117

Query:   267 EPLSGRDVAVAGREGSHFS--NQSQDAGLEESQF-PDDGCDNCDDLRRLGQNGDVNDDQI 323
             E   G        EGSH S  + S+ A  E+ ++  +D  D  DD  R  QN D  + Q 
Sbjct:   118 EDERGH----GSDEGSHHSEGDGSEKAHSEDEKWGKEDKSDQSDDEERQ-QNSDDEERQQ 172

Query:   324 QHNQAEDGHNAARLPRA------EPVQNATVDEANIT--ERVPSVGTQH--EDTEDESRG 373
               +  E   N+    R       E +QN+  ++   +  E  P V  +   ++++D+ R 
Sbjct:   173 NSDDEEKAQNSDEDERPQMSDDEERLQNSDEEKMQNSDDEERPQVSDEEKMQNSDDDERA 232

Query:   374 EVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDS 415
             +  HS EE+  + +D     R D   ++ H  S ++A G DS
Sbjct:   233 Q--HSDEEKMQNSDDDERAQRSDEE-EQEH-KSGESARGSDS 270

GO:0001711 "endodermal cell fate commitment" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1NCJ0 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00045, P = 0.00045
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query:   728 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKW 787
             +P  RR++ PWT +E+  LK GV++F  V +    W KIL  G    F+ RT++ LKD+W
Sbjct:   288 LPCSRRRQ-PWTYEEDRKLKSGVREFG-VGN----WTKILIHGD---FNNRTSVMLKDRW 338

Query:   788 RNMCK 792
             R +CK
Sbjct:   339 RTLCK 343

GO:0000723 "telomere maintenance" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042162 "telomeric DNA binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|F1NEJ5 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query:   728 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKW 787
             +P  RR++ PWT +E+  LK GV++F  V +    W KIL  G    F+ RT++ LKD+W
Sbjct:   297 LPCSRRRQ-PWTYEEDRKLKSGVREFG-VGN----WTKILIHGD---FNNRTSVMLKDRW 347

Query:   788 RNMCK 792
             R +CK
Sbjct:   348 RTLCK 352

GO:0003682 "chromatin binding" evidence=IEA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0000783 "nuclear telomere cap complex" evidence=IEA

GO:0001309 "age-dependent telomere shortening" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008301 "DNA binding, bending" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0010521 "telomerase inhibitor activity" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0032211 "negative regulation of telomere maintenance via telomerase" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045840 "positive regulation of mitosis" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI000412 hypothetical protein (827 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	798
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	3e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-06
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-06
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-05
smart00249	47	smart00249, PHD, PHD zinc finger	1e-04
pfam00628	51	pfam00628, PHD, PHD-finger	3e-04
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	0.004

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
             WT +E+E L +GV+K+      +  W KIL+     F + RT++DLKDKWRN+ K
Sbjct: 1   RKWTDEEDEALVEGVEKYG-----VGNWAKILKDYF--FVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 10/58 (17%)

Query: 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           K  WT +E+E+L + V+K+   +     W+KI     +    GRTA   +++WRN+ K
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNN-----WEKI-----AKELPGRTAEQCRERWRNLLK 48

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 10/54 (18%)

Query: 737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790
           PWT +E+E+L + V+K+   +     W+KI     +    GRT    +++WRN+
Sbjct: 1   PWTEEEDELLLEAVKKYGKNN-----WEKI-----AKELPGRTPKQCRERWRNL 44

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790
           + PWT +E+E+L + V+K  + +     W KI +        GRT    K++W N 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN-----WSKIAK-----HLPGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 427 CVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFC 470
           C  C K    G+LL C    C    H+ CLG P+   +  G ++CP C
Sbjct: 2   CSVCGKPDDGGELLQCD--GCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDE--KGNFHCPFC 470
           +C K + DG+LL C    C    H  CLG P++ +E  +G ++CP C
Sbjct: 4   VCGKVDDDGELLLCD--GCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 738 WTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR 796
           WT +E+E L K V+K+ +       WK+I    +     GRT    +D+WR   +    
Sbjct: 1   WTEEEDEKLLKLVEKYGN------DWKQI----AEEL--GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	798
KOG4299	613	consensus PHD Zn-finger protein [General function	98.61
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.58
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.27
KOG0383	696	consensus Predicted helicase [General function pre	98.26
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.22
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.22
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.11
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.06
KOG1973	274	consensus Chromatin remodeling protein, contains P	97.68
PLN03212	249	Transcription repressor MYB5; Provisional	97.59
PLN03212	249	Transcription repressor MYB5; Provisional	97.53
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.4
PLN03091	459	hypothetical protein; Provisional	97.37
PLN03091	459	hypothetical protein; Provisional	97.36
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.22
KOG1244	336	consensus Predicted transcription factor Requiem/N	96.98
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	96.82
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	96.78
COG5141	669	PHD zinc finger-containing protein [General functi	96.61
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	96.51
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.44
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	96.24
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.06
KOG0048	238	consensus Transcription factor, Myb superfamily [T	95.98
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.94
KOG0956	900	consensus PHD finger protein AF10 [General functio	95.93
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	95.73
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	95.02
KOG0048	238	consensus Transcription factor, Myb superfamily [T	94.9
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	94.88
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	94.88
KOG0049	939	consensus Transcription factor, Myb superfamily [T	93.71
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	93.6
KOG0957	707	consensus PHD finger protein [General function pre	93.21
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	92.57
KOG0051	607	consensus RNA polymerase I termination factor, Myb	92.35
KOG1512	381	consensus PHD Zn-finger protein [General function	91.61
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	91.32
KOG0049	939	consensus Transcription factor, Myb superfamily [T	89.54
KOG3612	588	consensus PHD Zn-finger protein [General function	88.89
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	88.86
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	87.08
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	84.69
KOG0954	893	consensus PHD finger protein [General function pre	84.24
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	83.84
KOG4299	613	consensus PHD Zn-finger protein [General function	82.69

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.61  E-value=1.1e-08  Score=115.78  Aligned_cols=56  Identities=30%  Similarity=0.774  Sum_probs=51.1

Q ss_pred             cccccccCCCCcE---EecCCCCCcccccccccCCC--CccCCCCCccCccccccchHHHHHH
Q 003750          424 QNLCVKCNKDGQL---LSCSSSTCPLAVHENCLGFP--VKFDEKGNFHCPFCAYTLSISEYLE  481 (798)
Q Consensus       424 ~d~C~~C~~~GqL---LcCD~~gCP~ayH~~Clg~~--~~~~peGdW~CP~C~y~ka~~~~~E  481 (798)
                      .+||..|+..|..   ||||  |||.+||..||-||  +...|.|.||||+|.++-.+....+
T Consensus       253 ~~fCsaCn~~~~F~~~i~CD--~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~  313 (613)
T KOG4299|consen  253 EDFCSACNGSGLFNDIICCD--GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKME  313 (613)
T ss_pred             HHHHHHhCCccccccceeec--CCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchh
Confidence            5799999999998   9999  99999999999999  8899999999999999877665555

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.58  E-value=4.9e-08  Score=76.70  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      |.+||.+|++.|++||++||     .++|..|....+    .+||..+++.+|+++.
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g-----~~~W~~Ia~~~~----~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYG-----KDNWKKIAKRMP----GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHST-----TTHHHHHHHHHS----SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-----CcHHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence            56899999999999999999     568999998644    5999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00249 PHD PHD zinc finger

Probab=98.27  E-value=7e-07  Score=66.68  Aligned_cols=43  Identities=40%  Similarity=0.960  Sum_probs=38.7

Q ss_pred             cccccCC---CCcEEecCCCCCcccccccccCCCCc-cCCCCCccCccc
Q 003750          426 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFC  470 (798)
Q Consensus       426 ~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C  470 (798)
                      +|..|+.   +|.||.|+  +|+..||..|++.+.. ..+...|+||.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCD--GCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECC--CCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            4778887   78999999  9999999999999877 788999999988

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=98.26  E-value=2.9e-07  Score=106.56  Aligned_cols=55  Identities=38%  Similarity=0.799  Sum_probs=50.8

Q ss_pred             CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750          419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS  475 (798)
Q Consensus       419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka  475 (798)
                      -+|-+++.|++|+.+|.||||+  .||.+||..|++++..-.|.|+|.||.|.+...
T Consensus        42 ~~~~~~e~c~ic~~~g~~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~   96 (696)
T KOG0383|consen   42 WDDAEQEACRICADGGELLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFCPKN   96 (696)
T ss_pred             cchhhhhhhhhhcCCCcEEEec--cccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence            4588899999999999999999  999999999999999999999999999976654

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.22  E-value=2.1e-06  Score=64.10  Aligned_cols=48  Identities=38%  Similarity=0.661  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+||.+|++.|+.+|.+||     .+.|..|....     .+||..+++++|+++.+
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g-----~~~w~~Ia~~~-----~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYG-----KNNWEKIAKEL-----PGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHc-----CCCCHHHHHHHHHHHcC
Confidence            35899999999999999999     57999999753     48999999999999875

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.22  E-value=4.1e-07  Score=71.65  Aligned_cols=44  Identities=34%  Similarity=0.902  Sum_probs=37.7

Q ss_pred             cccccCC---CCcEEecCCCCCcccccccccCCCCc--cCCCCCccCcccc
Q 003750          426 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVK--FDEKGNFHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~--~~peGdW~CP~C~  471 (798)
                      +|.+|+.   ++.||.||  +|...||..|++++..  ..+.+.|+||.|.
T Consensus         1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~   49 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR   49 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred             eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence            4778887   88899999  9999999999999854  4456699999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.11  E-value=3.9e-06  Score=61.94  Aligned_cols=45  Identities=38%  Similarity=0.799  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750          737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       737 ~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      +||.+|++.|+.++.+||     .++|..|....     .+||..+++++|.++.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g-----~~~w~~Ia~~~-----~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYG-----KNNWEKIAKEL-----PGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHC-----cCCHHHHHhHc-----CCCCHHHHHHHHHHhC
Confidence            599999999999999999     58999999853     4699999999999874

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.06  E-value=5.2e-06  Score=67.27  Aligned_cols=44  Identities=39%  Similarity=0.787  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhh-hcc
Q 003750          738 WTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN-MCK  792 (798)
Q Consensus       738 WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRN-L~K  792 (798)
                      ||.+|++.|+.+|++||      .+|+.|...    | +.||..++++||++ |..
T Consensus         1 WT~eEd~~L~~~~~~~g------~~W~~Ia~~----l-~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG------NDWKKIAEH----L-GNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT------S-HHHHHHH----S-TTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHC------cCHHHHHHH----H-CcCCHHHHHHHHHHHCcc
Confidence            99999999999999999      489999975    3 47999999999999 543

...

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=97.68  E-value=1.7e-05  Score=83.08  Aligned_cols=43  Identities=30%  Similarity=0.811  Sum_probs=37.9

Q ss_pred             cccccCCCCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccc
Q 003750          426 LCVKCNKDGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +|- |...|+.+-||..+|| -=||+.|||..  ..|.|.||||.|.
T Consensus       223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~--~~PkgkWyC~~C~  266 (274)
T KOG1973|consen  223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK--TKPKGKWYCPRCK  266 (274)
T ss_pred             Eec-ccccccccccCCCCCCcceEEEeccccc--cCCCCcccchhhh
Confidence            344 7779999999988899 78999999987  6799999999996

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.59  E-value=8.6e-05  Score=77.72  Aligned_cols=55  Identities=24%  Similarity=0.359  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      .+...+|.+||+||.+.|+..|++||     .++|+.|...    +..+||.-+.+++|.|..+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG-----~~nW~~IAk~----~g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEG-----EGRWRSLPKR----AGLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhC-----cccHHHHHHh----hhcCCCcchHHHHHHHhhc
Confidence            34456678999999999999999999     6899999864    2258999999999998753

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.53  E-value=6.8e-05  Score=78.47  Aligned_cols=51  Identities=22%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      -++.+||.||++.|++.|.+||      .+|+.|..     |+++||..++|.+|.++.++.
T Consensus        76 I~kgpWT~EED~lLlel~~~~G------nKWs~IAk-----~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         76 VKRGGITSDEEDLILRLHRLLG------NRWSLIAG-----RIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             cccCCCChHHHHHHHHHHHhcc------ccHHHHHh-----hcCCCCHHHHHHHHHHHHhHH
Confidence            3567999999999999999999      58999997     347999999999999877664

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=97.40  E-value=7.6e-05  Score=73.09  Aligned_cols=34  Identities=32%  Similarity=0.612  Sum_probs=29.4

Q ss_pred             cccccccCCCCccCCCCCccCccccccchHHHHH
Q 003750          447 AVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYL  480 (798)
Q Consensus       447 ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~~~~  480 (798)
                      .||..||.||++.+|+|+|+||.|..++....+.
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~   34 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAM   34 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcCCCCCCccc
Confidence            4999999999999999999999999776655543

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PLN03091 hypothetical protein; Provisional

Probab=97.37  E-value=0.00025  Score=79.24  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=45.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .+.++.+||.||++.|+..|++||     .++|+.|...    +..+||.-+.++||.|...-
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG-----~~nWs~IAk~----~g~gRT~KQCRERW~NyLdP   63 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYG-----HGCWSSVPKQ----AGLQRCGKSCRLRWINYLRP   63 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhC-----cCCHHHHhhh----hccCcCcchHhHHHHhccCC
Confidence            345667899999999999999999     6899999864    22589999999999986643

>PLN03091 hypothetical protein; Provisional

Probab=97.36  E-value=0.00014  Score=81.20  Aligned_cols=50  Identities=22%  Similarity=0.438  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|++.+++||      .+|++|..     |+++||..++|.+|+.+.|+.
T Consensus        66 kKgpWT~EED~lLLeL~k~~G------nKWskIAk-----~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         66 KRGTFSQQEENLIIELHAVLG------NRWSQIAA-----QLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhC------cchHHHHH-----hcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999999      59999997     347999999999999877653

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.22  E-value=0.00023  Score=72.56  Aligned_cols=61  Identities=26%  Similarity=0.399  Sum_probs=54.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .-..+.+||.+|++.|..+.....|.   ...+.+||..++.+|...||+-.|.+.||.|.++.
T Consensus        69 ~iq~kalfS~~EE~lL~~v~s~~~p~---le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   69 AIQSKALFSKEEEQLLGTVASSSQPS---LETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             cccccCCCCHHHHHHHHhhhhccCCc---HHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            34577899999999999988877653   78999999999999999999999999999998764

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=96.98  E-value=0.00033  Score=74.53  Aligned_cols=51  Identities=33%  Similarity=0.773  Sum_probs=43.6

Q ss_pred             CCCc--ccccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          419 SGWT--EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       419 s~~~--~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      -.|.  +=-+|.+|+.   +-|||.||  .|-+.||--||.||...+|+|.|.|-.|.
T Consensus       274 yrwqcieck~csicgtsenddqllfcd--dcdrgyhmyclsppm~eppegswsc~KOG  329 (336)
T KOG1244|consen  274 YRWQCIECKYCSICGTSENDDQLLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCL  329 (336)
T ss_pred             heeeeeecceeccccCcCCCceeEeec--ccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence            3564  3346778875   67899999  99999999999999999999999999993

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=96.82  E-value=0.00075  Score=81.92  Aligned_cols=55  Identities=29%  Similarity=0.665  Sum_probs=46.8

Q ss_pred             CCCcccccccccCCC-Cc----EEecCCCCCcccccccccCCCCccCCCCCccCccccccchHH
Q 003750          419 SGWTEQNLCVKCNKD-GQ----LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSIS  477 (798)
Q Consensus       419 s~~~~~d~C~~C~~~-Gq----LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~  477 (798)
                      ++...+..|.+|.++ .+    +|.||  +|-++||-.|.|  ..++|+|.|+|-.|-++.+-.
T Consensus       214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~  273 (1051)
T KOG0955|consen  214 ALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP  273 (1051)
T ss_pred             cccCCCccceeecccccCCCceEEEcC--CCcchhhhhccC--CCCCCCCcEeehhhccCcCcc
Confidence            566778899999874 33    99999  999999999999  558999999999998776543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=96.78  E-value=0.0018  Score=54.33  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccch---hhhhhhcCCCcCCCC-CcchhHHH
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPW---KKILEFGSSVFFSGR-TAIDLKDK  786 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~W---kkIL~~~~~vF~~~R-T~VDLKDK  786 (798)
                      ++|..||+||-..+++||+.||     .|.|   +.|++.+.    ..| |..+++-.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G-----~g~~a~pk~I~~~~~----~~~lT~~qV~SH   49 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLG-----GPDWATPKRILELMV----VDGLTRDQVASH   49 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-----CCcccchHHHHHHcC----CCCCCHHHHHHH
Confidence            4678999999999999999999     7899   99998644    244 88887743

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=96.61  E-value=0.00079  Score=76.07  Aligned_cols=48  Identities=29%  Similarity=0.805  Sum_probs=40.8

Q ss_pred             ccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          423 EQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       423 ~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      =++.|.+|..--     -++.||  ||-+++|.+|-|-+  |.|+|-|+|-.|.|..
T Consensus       192 ~d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYGI~--f~peG~WlCrkCi~~~  244 (669)
T COG5141         192 FDDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYGIQ--FLPEGFWLCRKCIYGE  244 (669)
T ss_pred             hhhhhHhccccccCCcceEEEec--Ccchhhhhhcccce--ecCcchhhhhhhcccc
Confidence            356788887643     399999  99999999999965  8999999999998763

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=96.51  E-value=0.0012  Score=69.73  Aligned_cols=41  Identities=32%  Similarity=0.849  Sum_probs=35.5

Q ss_pred             ccCC--CCcEEecCCCCCccc-ccccccCCCCccCCCCCccCcccc
Q 003750          429 KCNK--DGQLLSCSSSTCPLA-VHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       429 ~C~~--~GqLLcCD~~gCP~a-yH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      .|..  =|+.+-||.-.|++- ||..|+|..  -+|+|-||||.|.
T Consensus       225 fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk--~pPKG~WYC~eCk  268 (271)
T COG5034         225 FCQQVSYGQMVACDNANCKREWFHLECVGLK--EPPKGKWYCPECK  268 (271)
T ss_pred             EecccccccceecCCCCCchhheeccccccC--CCCCCcEeCHHhH
Confidence            4554  499999999999985 899999976  4799999999995

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.44  E-value=0.0014  Score=77.21  Aligned_cols=50  Identities=24%  Similarity=0.496  Sum_probs=42.5

Q ss_pred             CcccccccccCCCC---cEEecCCCCCccc-ccccccCCCCccCCCCCccCccccc
Q 003750          421 WTEQNLCVKCNKDG---QLLSCSSSTCPLA-VHENCLGFPVKFDEKGNFHCPFCAY  472 (798)
Q Consensus       421 ~~~~d~C~~C~~~G---qLLcCD~~gCP~a-yH~~Clg~~~~~~peGdW~CP~C~y  472 (798)
                      ..+.--|..|...-   -||.||  +|-.+ ||.-||.+++-..|-|.|||+.|..
T Consensus       212 ~~E~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d  265 (1134)
T KOG0825|consen  212 SQEEVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSL  265 (1134)
T ss_pred             ccccccceeeccCChHHhheeec--ccccceeeccccCcccccccccceecCcchh
Confidence            34555688998743   399999  99999 9999999998888999999999973

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=96.24  E-value=0.00077  Score=81.51  Aligned_cols=55  Identities=22%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             CCCcccccccccCCCCcEEecCCCCCcccccc-cccCC--CCccCCCCCccCccccccc
Q 003750          419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHE-NCLGF--PVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~-~Clg~--~~~~~peGdW~CP~C~y~k  474 (798)
                      -=|...+.|++|+++|.||||+ +.||.+||. +||+.  -.+..+.|-|+||.|...+
T Consensus       423 ~ywfi~rrl~Ie~~det~l~yy-sT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq  480 (1414)
T KOG1473|consen  423 KYWFISRRLRIEGMDETLLWYY-STCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ  480 (1414)
T ss_pred             chhceeeeeEEecCCCcEEEEe-cCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence            4588899999999999999999 449999999 99994  4788999999999998654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.06  E-value=0.0054  Score=52.20  Aligned_cols=59  Identities=27%  Similarity=0.392  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhcC-----CC------CCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          735 KVPWTAKEEEILKKGVQKFAS-----VD------DRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp-----~~------~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ...||.+|.+.|++-|.+|-.     ..      ....-|..|...+-.++...||..+||.+|.||...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999999821     00      125679999998766666799999999999999754

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=95.98  E-value=0.0058  Score=62.75  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      +|..||+||++.|+.+-.+||+      +|+.|...     ++|||--.+|.-|..-.|+
T Consensus        61 krg~fT~eEe~~Ii~lH~~~GN------rWs~IA~~-----LPGRTDNeIKN~Wnt~lkk  109 (238)
T KOG0048|consen   61 KRGNFSDEEEDLIIKLHALLGN------RWSLIAGR-----LPGRTDNEVKNHWNTHLKK  109 (238)
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc------HHHHHHhh-----CCCcCHHHHHHHHHHHHHH
Confidence            5789999999999999999994      79999983     5799999999999765544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.94  E-value=0.0019  Score=55.50  Aligned_cols=59  Identities=25%  Similarity=0.389  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHHh------hcCCCCCcc--chhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          735 KVPWTAKEEEILKKGVQK------FASVDDRII--PWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqK------yGp~~~~~G--~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      |..||.+|+.+|+..+..      |++.+...+  .|..|...... +.-.||..++++||.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~-~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAE-HGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHH-HC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHH
Confidence            568999999999999887      331012222  69999975321 112799999999999998754

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=95.93  E-value=0.0022  Score=74.87  Aligned_cols=60  Identities=32%  Similarity=0.731  Sum_probs=46.8

Q ss_pred             ccccCC-CC----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 003750          427 CVKCNK-DG----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQ  498 (798)
Q Consensus       427 C~~C~~-~G----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~~~~EakK~a~~AkkeL~~F~~  498 (798)
                      |++|.. .|    =|+.||+-+|-+|+|--|.|..  -.|.|.|||-.|.          .++.++.-|=+|.=|=+
T Consensus         8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv--qVPtGpWfCrKCe----------sqeraarvrCeLCP~kd   72 (900)
T KOG0956|consen    8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV--QVPTGPWFCRKCE----------SQERAARVRCELCPHKD   72 (900)
T ss_pred             eeeecCcCCCccCceeeecCCCceeeeehhcceeE--ecCCCchhhhhhh----------hhhhhccceeecccCcc
Confidence            677765 23    3999999999999999999975  4689999999994          55666666767765544

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=95.73  E-value=0.0037  Score=75.94  Aligned_cols=82  Identities=26%  Similarity=0.444  Sum_probs=65.2

Q ss_pred             ccccccccchhhhhccccchhhhccCCc----cccCCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCC
Q 003750          388 DAYHNDRIDVAVKKSHFLSSQAALGHDS----LATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKG  463 (798)
Q Consensus       388 d~y~~~~~~~~~~k~~fLsSq~t~~~ds----~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG  463 (798)
                      ++|...-|+--++=-+||+-|--..-+.    .+.....=+|.|+.|+..|.||||.  .||++||..|+-+|--..|+-
T Consensus       304 ~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~E--t~prvvhlEcv~hP~~~~~s~  381 (1414)
T KOG1473|consen  304 DEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCE--TCPRVVHLECVFHPRFAVPSA  381 (1414)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecc--cCCceEEeeecCCccccCCCc
Confidence            5677777777777778888764322221    1124556678999999999999999  999999999999998888999


Q ss_pred             CccCcccc
Q 003750          464 NFHCPFCA  471 (798)
Q Consensus       464 dW~CP~C~  471 (798)
                      .|-|-.|.
T Consensus       382 ~~e~evc~  389 (1414)
T KOG1473|consen  382 FWECEVCN  389 (1414)
T ss_pred             cchhhhhh
Confidence            99999997

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=95.02  E-value=0.018  Score=54.70  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhccC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .+++.||++|+..|+-.|.+||  =+..|.|..|+..       -++.|+..||+.+|+.+-..|.+.
T Consensus        47 ~~~k~yseeEDRfLl~~~~~~G--~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   47 NKKKVYSEEEDRFLLCMLYKYG--YDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             SS-SSS-HHHHHHHHHHHHHHT--TTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHHhC--CCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            4677999999999999999999  2334999999963       356677999999999998887653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=94.90  E-value=0.031  Score=57.53  Aligned_cols=49  Identities=18%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +-+||.||++.|++-|++||     .|+|..|-+...    -+|+.-...-+|-|-.+
T Consensus         9 kGpWt~EED~~L~~~V~~~G-----~~~W~~i~k~~g----l~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFG-----KHNGTALPKLAG----LRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhC-----CCCcchhhhhcC----CCccchHHHHHhhcccC
Confidence            58999999999999999999     789999998654    28999999999988654

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=94.88  E-value=0.0067  Score=76.05  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=45.4

Q ss_pred             CCcccccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          420 GWTEQNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       420 ~~~~~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      .....-+|..|...|+   +|.|+  +|-..||.-|+-+.....|.|+|+||.|.
T Consensus      1104 ~s~~~~~c~~cr~k~~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred             cccchhhhhhhhhcccchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence            4456678999998876   79999  99999999999999999999999999997

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=94.88  E-value=0.0071  Score=46.66  Aligned_cols=34  Identities=32%  Similarity=0.786  Sum_probs=18.9

Q ss_pred             cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          435 QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       435 qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +||.|+  +|-+++|.+|-|..... ...+|+|-.|.
T Consensus         3 ~ll~C~--~C~v~VH~~CYGv~~~~-~~~~W~C~~C~   36 (36)
T PF13831_consen    3 PLLFCD--NCNVAVHQSCYGVSEVP-DGDDWLCDRCE   36 (36)
T ss_dssp             EEEE-S--SS--EEEHHHHT-SS---SS-----HHH-
T ss_pred             ceEEeC--CCCCcCChhhCCcccCC-CCCcEECCcCC
Confidence            599999  99999999999998542 23379998873

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=93.71  E-value=0.058  Score=63.33  Aligned_cols=54  Identities=20%  Similarity=0.455  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR  796 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k  796 (798)
                      -++-+||.+|...|+.+|.+||     ..-|.+|...    | ++|+-.++.++|-|....+.|
T Consensus       358 ikhg~wt~~ED~~L~~AV~~Yg-----~kdw~k~R~~----v-PnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  358 VKHGRWTDQEDVLLVCAVSRYG-----AKDWAKVRQA----V-PNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhC-----ccchhhHHHh----c-CCccHHHHHHHHHHHHHHhhc
Confidence            4677999999999999999999     7899999974    4 689999999999988776655

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=93.60  E-value=0.033  Score=65.16  Aligned_cols=44  Identities=27%  Similarity=0.697  Sum_probs=37.8

Q ss_pred             cccccCCCC---cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          426 LCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      .|..|+..|   +++.|+  +|-.+||--|+-|+.+.++.|.|+||.|.
T Consensus        70 vCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~  116 (694)
T KOG4443|consen   70 VCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCT  116 (694)
T ss_pred             eeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHH
Confidence            455555433   599999  99999999999999999999999999986

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=93.21  E-value=0.035  Score=63.52  Aligned_cols=45  Identities=36%  Similarity=0.716  Sum_probs=40.0

Q ss_pred             cccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCC----ccCccc
Q 003750          424 QNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGN----FHCPFC  470 (798)
Q Consensus       424 ~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGd----W~CP~C  470 (798)
                      .-.|.+|.+.-.   |+.||  .|-+.||.-||.||++-.|.-+    |.|-+|
T Consensus       544 ~ysCgiCkks~dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  544 NYSCGICKKSTDQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             ceeeeeeccchhhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence            356999988654   89999  9999999999999999999776    999999

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=92.57  E-value=0.12  Score=58.43  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      --||.+||-.|++|+++||     .|+|..|.+.-     ..||.-+.|+.|.++.-.+
T Consensus        73 ~~WtadEEilLLea~~t~G-----~GNW~dIA~hI-----GtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   73 PSWTADEEILLLEAAETYG-----FGNWQDIADHI-----GTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCChHHHHHHHHHHHHhC-----CCcHHHHHHHH-----cccchHHHHHHHHHHHhcC
Confidence            3799999999999999999     99999999852     3699999999998875443

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=92.35  E-value=0.11  Score=60.68  Aligned_cols=50  Identities=40%  Similarity=0.650  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      .+-.||++|++.|..-|.++|      +.|+.|-+.      -+|.+.+..|+||+..+.+.
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g------~~W~~Ig~~------lgr~P~~crd~wr~~~~~g~  432 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG------NDWKEIGKA------LGRMPMDCRDRWRQYVKCGS  432 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc------ccHHHHHHH------HccCcHHHHHHHHHhhcccc
Confidence            677999999999999999999      799999973      37999999999999998774

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=91.61  E-value=0.073  Score=57.69  Aligned_cols=43  Identities=28%  Similarity=0.689  Sum_probs=36.6

Q ss_pred             ccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCc-ccc
Q 003750          425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCP-FCA  471 (798)
Q Consensus       425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP-~C~  471 (798)
                      .+|+.|++   .-+.|.||  -|-+.||-=|+|..  ..|.|.|.|- ||+
T Consensus       315 ~lC~IC~~P~~E~E~~FCD--~CDRG~HT~CVGL~--~lP~G~WICD~~C~  361 (381)
T KOG1512|consen  315 ELCRICLGPVIESEHLFCD--VCDRGPHTLCVGLQ--DLPRGEWICDMRCR  361 (381)
T ss_pred             HhhhccCCcccchheeccc--cccCCCCccccccc--cccCccchhhhHHH
Confidence            57888876   45699999  99999999999976  4799999997 675

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=91.32  E-value=0.1  Score=52.91  Aligned_cols=43  Identities=33%  Similarity=0.794  Sum_probs=34.6

Q ss_pred             ccccC------CCCcEEecCCCCCcccccccccCCC------CccCCCCCc--cCcccc
Q 003750          427 CVKCN------KDGQLLSCSSSTCPLAVHENCLGFP------VKFDEKGNF--HCPFCA  471 (798)
Q Consensus       427 C~~C~------~~GqLLcCD~~gCP~ayH~~Clg~~------~~~~peGdW--~CP~C~  471 (798)
                      |-.|+      ..|.|+.|-  ||..+||..|||+.      ++...+++|  -|-+|.
T Consensus         2 C~~C~~~g~~~~kG~Lv~CQ--GCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci   58 (175)
T PF15446_consen    2 CDTCGYEGDDRNKGPLVYCQ--GCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI   58 (175)
T ss_pred             cccccCCCCCccCCCeEEcC--ccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence            66674      358899999  99999999999995      456667777  488884

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=89.54  E-value=0.23  Score=58.55  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=39.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHH
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKW  787 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKW  787 (798)
                      .+-|.-+||-.|++.|+..|++||     .|+|.+|..     |+..||.-+|-.+-
T Consensus       408 ~s~K~~rW~l~edeqL~~~V~~YG-----~g~WakcA~-----~Lp~~t~~q~~rrR  454 (939)
T KOG0049|consen  408 RSAKVERWTLVEDEQLLYAVKVYG-----KGNWAKCAM-----LLPKKTSRQLRRRR  454 (939)
T ss_pred             HhhccCceeecchHHHHHHHHHHc-----cchHHHHHH-----HccccchhHHHHHH
Confidence            455777999999999999999999     999999996     56788886665443

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=88.89  E-value=0.32  Score=56.37  Aligned_cols=91  Identities=22%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             cccccccCCccccccccchhhhhccccchhhhccCC--ccccCCCcccccccccCCCCcEEecCCCCCcccccccccCCC
Q 003750          379 CEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHD--SLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFP  456 (798)
Q Consensus       379 ~~~~~ssdsd~y~~~~~~~~~~k~~fLsSq~t~~~d--s~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~  456 (798)
                      .....-|++++-.-|+..+...+++=+|-|-+..-|  ...-+-.+++-+|..|++.|..|.|+  .|-++||..|+-+.
T Consensus        13 ~~q~~as~~~~~a~e~~g~~~p~Sp~~skq~~~~~d~~~~~~~~~N~d~~cfechlpg~vl~c~--vc~Rs~h~~c~sp~   90 (588)
T KOG3612|consen   13 MSQESASLSVKNATERGGLVAPASPGRSKQLALAFDQKVSRLPSSNIDPFCFECHLPGAVLKCI--VCHRSFHENCQSPD   90 (588)
T ss_pred             cchhhhhcchhhhhhhccCCCCCCccccchhhhccCcccccccccCCCcccccccCCcceeeee--hhhccccccccCcc
Confidence            344556777777778888888888888887665444  33334556777999999999999999  99999999999986


Q ss_pred             Ccc-CCCCCccCcccc
Q 003750          457 VKF-DEKGNFHCPFCA  471 (798)
Q Consensus       457 ~~~-~peGdW~CP~C~  471 (798)
                      ... .-+--|.||-|.
T Consensus        91 ~q~r~~s~p~~~p~p~  106 (588)
T KOG3612|consen   91 PQKRNYSVPSDKPQPY  106 (588)
T ss_pred             hhhccccccccCCccc
Confidence            433 235679999996

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=88.86  E-value=0.17  Score=57.62  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             ccccCCCC-----cEEecCCCCCcccccccccCCC----CccCCCCCccCccccccchHHHHHH--HHHHHHHHHHHHHH
Q 003750          427 CVKCNKDG-----QLLSCSSSTCPLAVHENCLGFP----VKFDEKGNFHCPFCAYTLSISEYLE--AKKRASVARKELAA  495 (798)
Q Consensus       427 C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~----~~~~peGdW~CP~C~y~ka~~~~~E--akK~a~~AkkeL~~  495 (798)
                      |+.|.-+|     ++|-|+  +|-.-||.-|.-+.    ..-|+.+.|||-.|.+.+......-  +-...-+|--.|+.
T Consensus       171 c~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~~~dv~~lal~~~~~  248 (464)
T KOG4323|consen  171 CSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLRWADVLHLALYNLKP  248 (464)
T ss_pred             eeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccccccccchhhhhhhh
Confidence            99988554     599999  99999999999986    4567899999999998876554432  33344555555555


Q ss_pred             Hhhcccchhh
Q 003750          496 FMQMGSVCHQ  505 (798)
Q Consensus       496 F~~~~q~~~~  505 (798)
                      ++.+.-..+.
T Consensus       249 ~~~~k~~~~~  258 (464)
T KOG4323|consen  249 MLKKKYFKSL  258 (464)
T ss_pred             hhccCCcccH
Confidence            5554443333

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=87.08  E-value=0.25  Score=42.98  Aligned_cols=46  Identities=30%  Similarity=0.619  Sum_probs=36.0

Q ss_pred             ccccccCCC-CcEEecCCCCCcccccccccCCCC---ccCCCCCccCccc
Q 003750          425 NLCVKCNKD-GQLLSCSSSTCPLAVHENCLGFPV---KFDEKGNFHCPFC  470 (798)
Q Consensus       425 d~C~~C~~~-GqLLcCD~~gCP~ayH~~Clg~~~---~~~peGdW~CP~C  470 (798)
                      ..|..|+.. |-.+-|...+|..+||..|.-...   .+.....+|.-||
T Consensus        37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C   86 (90)
T PF13771_consen   37 LKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFC   86 (90)
T ss_pred             CCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEC
Confidence            479999999 999999999999999999987753   2332334555555

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=84.69  E-value=0.86  Score=56.53  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhcc
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      .+++.||.+|...|+-.+.+||     .|+|..|+..       -++.|+..||+..|+.+-..|.+
T Consensus       924 ~~~~~~~~~~d~~~~~~~~~~g-----~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        924 NKGKLYNEECDRFMLCMVHKLG-----YGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhc-----cchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence            3556899999999999999999     8999999753       35667799999999999988765

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=84.24  E-value=0.49  Score=56.57  Aligned_cols=50  Identities=26%  Similarity=0.710  Sum_probs=41.5

Q ss_pred             CCcccccccccCCC-----CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          420 GWTEQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       420 ~~~~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      ...++-+|-+|-.+     -+++.||  .|-+.+|..|-|.-  .+|+|.|.|-.|...
T Consensus       267 e~dedviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyGIl--e~p~gpWlCr~Calg  321 (893)
T KOG0954|consen  267 EYDEDVICDVCRSPDSEEANEMVFCD--KCNICVHQACYGIL--EVPEGPWLCRTCALG  321 (893)
T ss_pred             eccccceeceecCCCccccceeEEec--cchhHHHHhhhcee--ecCCCCeeehhcccc
Confidence            34477889998775     4699999  99999999999975  478899999888753

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=83.84  E-value=0.79  Score=39.97  Aligned_cols=57  Identities=21%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHhh---cCC-CC---CccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          737 PWTAKEEEILKKGVQKF---ASV-DD---RIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       737 ~WT~EEeeaL~eGVqKy---Gp~-~~---~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .||.+.+++|++.+...   |+. +.   ....|..|...+...|....|.-+||.||+.|.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999998655   222 11   13458889887666666677889999999998764

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=82.69  E-value=0.68  Score=54.41  Aligned_cols=48  Identities=27%  Similarity=0.644  Sum_probs=38.6

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCCc-cCCCCCccCccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAY  472 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C~y  472 (798)
                      --..|..|..+|.+|||+  .||.++|..|.++... ....+.|-|-.|--
T Consensus        46 ~~ts~~~~~~~gn~~~~~--~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~   94 (613)
T KOG4299|consen   46 AATSCGICKSGGNLLCCD--HCPASFHLECDKPPLSPDLKGSEINCSRCPK   94 (613)
T ss_pred             hhhhcchhhhcCCccccc--cCccccchhccCcccCcccccccccccCCCc
Confidence            377899999999999999  9999999999999743 23346666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	798
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-19
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-18
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-18
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	7e-16
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	7e-16
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-15
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	2e-07
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	2e-07
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	1e-06
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	6e-06
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	7e-06
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	9e-06
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	1e-05
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	2e-05
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-04
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	8e-04

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 80.5 bits (199), Expect = 5e-19
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
             KK  WT +E E +K GVQK+   +     W  I +      F  RTA+ +KD+WR M 
Sbjct: 8   ITKKQKWTVEESEWVKAGVQKYGEGN-----WAAISKN---YPFVNRTAVMIKDRWRTMK 59

Query: 792 K 792
           +
Sbjct: 60  R 60

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 727 PIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDK 786
           P     RK+  W  +E++ L+ GV+K+         W KIL       F+ RT++ LKD+
Sbjct: 2   PEKHRARKRQAWLWEEDKNLRSGVRKYG-----EGNWSKILL---HYKFNNRTSVMLKDR 53

Query: 787 WRNMCK 792
           WR M K
Sbjct: 54  WRTMKK 59

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           KK  WT +E E +K GVQK+   +     W  I +   +  F  RTA+ +KD+WR M +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGN-----WAAISK---NYPFVNRTAVMIKDRWRTMKR 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           K+  W  +E++ L+ GV+K+         W KIL       F+ RT++ LKD+WR M K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYG-----EGNWSKILL---HYKFNNRTSVMLKDRWRTMKK 51

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 73.6 bits (180), Expect = 7e-16
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
           RR + P+T  E E+L + V+   +       W+ +           RT +DLKDKW+ + 
Sbjct: 28  RRIRRPFTVAEVELLVEAVEHLGTG-----RWRDVKFRAFEN-VHHRTYVDLKDKWKTLV 81

Query: 792 KGSPRS 797
             +  +
Sbjct: 82  HTASIA 87

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 73.2 bits (179), Expect = 7e-16
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
           RR + P++  E E L + V+K  +       W+ +           RT +DLKDKW+ + 
Sbjct: 10  RRIRRPFSVAEVEALVQAVEKLGTGR-----WRDVKLCAFED-ADHRTYVDLKDKWKTLV 63

Query: 792 KGSPRSK 798
             +  S 
Sbjct: 64  HTAKISP 70

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 719 PKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGR 778
           P    +       RR + P++  E E L + V+   +       W+ +           R
Sbjct: 1   PVNQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTG-----RWRDVKMRAFDN-ADHR 54

Query: 779 TAIDLKDKWRNMCKGSPRSK 798
           T +DLKDKW+ +   +  + 
Sbjct: 55  TYVDLKDKWKTLVHTASIAP 74

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR 796
           P++  E E L + V+   +       W+ +           RT +DLKDKW+ +   +  
Sbjct: 2   PFSVAEVEALVEAVEHLGTG-----RWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASI 55

Query: 797 S 797
           +
Sbjct: 56  A 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 7e-08
 Identities = 80/571 (14%), Positives = 148/571 (25%), Gaps = 157/571 (27%)

Query: 85  FALSE---SCEDVLQQILQETSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDT 141
           F   E     +D+L  + ++    + +         DV       ++++ K  + H    
Sbjct: 9   FETGEHQYQYKDILS-VFEDAFVDNFDCK-------DVQDMP---KSILSKEEIDH---- 53

Query: 142 ILEGTHPLAASLK-----ETSGLTCVSECGTARVGD-LDHNAQAMSEK---ENLLPSTCE 192
           I+     ++ +L+      +     V +     V + L  N + +      E   PS   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 193 NRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHK---QDAISN 249
               + RD L+                       N  Q     N +  +     + A+  
Sbjct: 110 RMYIEQRDRLY-----------------------NDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 250 HQSADQISV---PTCGKETVEPLSGRDVAVAGREGSH-----FSNQSQDAGLEE------ 295
            + A  + +      GK  V         V  +           N +    + E      
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 296 SQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRA----EPVQNATVDEA 351
            Q   +     D    +         +++       +              VQNA    A
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----ENCLLVLLNVQNAKAWNA 261

Query: 352 --------------NITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRID- 396
                          +T+ + +  T H   +  S         +E  S    Y + R   
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQD 317

Query: 397 ---VAVKKSHFLSSQ-AALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENC 452
                +  +    S  A    D LAT    +    V C+K   ++  S +    A +   
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 453 ---LG-FP--VKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQM 506
              L  FP                   LS+        ++ V        M + +  H+ 
Sbjct: 375 FDRLSVFPPSAHIPTI----------LLSL--IWFDVIKSDV--------MVVVNKLHKY 414

Query: 507 DLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKK 566
            L  K   K+   S       I         E   + +N   LH     +   +   K  
Sbjct: 415 SLVEK-QPKESTIS-------IPS----IYLELKVKLENEYALH---RSIVDHYNIPKTF 459

Query: 567 AEPLHDVSDP-----LCQ---RHSANKKKAE 589
                D+  P            H  N +  E
Sbjct: 460 --DSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
              +  +T +E   L  GV+   +       W  IL   S  F  GR A+DL  K+  + 
Sbjct: 5   SSGRKDFTKEEVNYLFHGVKTMGN------HWNSIL--WSFPFQKGRRAVDLAHKYHRLI 56

Query: 792 KG 793
            G
Sbjct: 57  SG 58

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 425 NLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKK 484
            +C  C K G L+ C+   C    H +C    ++      + C  C     + E   +  
Sbjct: 3   TICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLS 60

Query: 485 RASVARKELAAFMQMGSVCHQMDLANKLHSKDP 517
                   + A +   +      +   L   +P
Sbjct: 61  LDGADSTGVVAKLSPANQRKCERVLLALFCHEP 93

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 424 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           Q+ C  C + G+++ C   TCP A H  CL   ++   +G + CP C
Sbjct: 11  QDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHC 55

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
             ++ C  C K GQLL C   TC    H +CL  P+K   KG + CP C
Sbjct: 3   IHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRC 49

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 427 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           C  C   G+L+ C    CP A H  CL  P++    G + C  C
Sbjct: 11  CAVCRDGGELICCD--GCPRAFHLACLSPPLREIPSGTWRCSSC 52

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
            ++ C  C K GQLL C   TC    H +CL  P+K   KG + CP C
Sbjct: 8   HEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRC 53

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 427 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           C  C   G+LL C   TCP + H +CL  P+     G + CP C
Sbjct: 12  CRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRC 53

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 407 SQAALGHDSLATSGWTEQN--LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGN 464
                G D +   G  + +  +C  C K G L+ C+   C    H +C    ++      
Sbjct: 6   HHHHHGSDIIDEFGTLDDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEE 63

Query: 465 FHCPFC 470
           + C  C
Sbjct: 64  WSCSLC 69

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 789
              KV WT +E+E L+  V++F   D     WK +     +  F  RT    + +W  
Sbjct: 5   SSGKVKWTHEEDEQLRALVRQFGQQD-----WKFL-----ASHFPNRTDQQCQYRWLR 52

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 427 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRA 486
           C  C   G+LL C    CP   H +C    +     G + C FC          +    +
Sbjct: 7   CAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPS 64

Query: 487 SVARKELAAFMQMGSVCHQMDLANKLHS 514
             + K+    +   +   +      L  
Sbjct: 65  HNSEKKKTEGLVKLTPIDKRKCERLLLF 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	798
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.71
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.62
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.59
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.55
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.38
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.36
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.35
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.35
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.33
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.32
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.3
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.28
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.26
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.24
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.2
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.2
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.18
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.17
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	99.15
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.15
2yt5_A	66	Metal-response element-binding transcription facto	99.12
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.11
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.1
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.1
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.08
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.01
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	98.99
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	98.86
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.83
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.82
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.81
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.76
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.75
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.72
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.71
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.68
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.67
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.67
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.63
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.63
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.59
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.56
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.53
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.52
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.38
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.35
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.34
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.33
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.32
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.31
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.2
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.18
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.17
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.17
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.15
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.15
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.11
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.07
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.07
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.05
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.01
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.96
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.91
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.86
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.8
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.78
1we9_A	64	PHD finger family protein; structural genomics, PH	97.61
2cjj_A	93	Radialis; plant development, DNA-binding protein,	97.51
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	97.48
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.36
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	97.3
1wew_A	78	DNA-binding family protein; structural genomics, P	97.2
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.19
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.14
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.09
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	96.97
1wee_A	72	PHD finger family protein; structural genomics, PH	96.9
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	96.88
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	96.54
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	96.46
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	96.44
1wem_A	76	Death associated transcription factor 1; structura	96.42
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	96.38
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	96.18
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.12
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	96.04
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.04
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.8
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.76
3kv5_D	488	JMJC domain-containing histone demethylation prote	95.74
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	95.68
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	95.05
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.96
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	94.72
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	93.8
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	93.65
2crg_A	70	Metastasis associated protein MTA3; transcription	93.48
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	93.3
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	93.18
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.89
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	92.78
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	92.69
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	91.87
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.65
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	90.3
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	89.4
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	88.64
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	87.58
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	84.12
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	83.64

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.71  E-value=6.9e-18  Score=140.97  Aligned_cols=56  Identities=29%  Similarity=0.460  Sum_probs=51.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      .|.+++||+||+++|++||++||     . +|++|+..|+  |+.+||+||||||||||.|+..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G-----~-~W~~I~~~y~--f~~~RT~VdLKdk~r~L~k~~~   60 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMG-----N-HWNSILWSFP--FQKGRRAVDLAHKYHRLISGPS   60 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHC-----S-CHHHHHHHSC--CCTTCCHHHHHHHHHHHHTCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHh-----H-hHHHHHHhCC--CccCcccchHHHHHHHHHhccc
Confidence            46788999999999999999999     4 9999999998  6799999999999999998753

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.62  E-value=2.7e-16  Score=142.49  Aligned_cols=60  Identities=28%  Similarity=0.484  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750          730 QLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       730 ~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      +.||++++||.||+++|++||++||     .|+|++|+..++++| .+||.||||||||||.|+..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~f-~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLG-----TGRWRDVKLCAFEDA-DHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHC-----SSSHHHHHSSSSSST-TCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhcc
Confidence            4678899999999999999999999     799999999887767 89999999999999998764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.59  E-value=9.1e-16  Score=142.35  Aligned_cols=60  Identities=28%  Similarity=0.438  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          728 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       728 ~p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .+..||++++||.||+++|++||++||     .|+|++|+..++.+| .+||.||||||||||.|+
T Consensus        24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           24 DFGQRRIRRPFTVAEVELLVEAVEHLG-----TGRWRDVKFRAFENV-HHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHHS-----SSCHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHHHHC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence            345788999999999999999999999     799999999877667 899999999999999964

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.55  E-value=3.9e-15  Score=137.96  Aligned_cols=59  Identities=27%  Similarity=0.459  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ...||++.+||.||+++|++||++||     .|+|++|+..+..+| .+||.||||||||||.|+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G-----~G~W~~Ia~~~~~~f-~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHG-----GGCHHHHHHHHCSCC-SSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence            45688999999999999999999999     799999999988777 899999999999999983

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.49  E-value=1.3e-14  Score=126.58  Aligned_cols=53  Identities=26%  Similarity=0.478  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++||.||+++|++||++||     .|+|++|+..|+.+| ++||.+|||||||||.|++
T Consensus         1 r~WT~eEd~~L~~gv~k~G-----~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHC-----CCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhc
Confidence            5899999999999999999     799999999877656 8999999999999999743

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.38  E-value=2.6e-13  Score=112.63  Aligned_cols=55  Identities=40%  Similarity=0.620  Sum_probs=48.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .+++.+||+||+++|+++|++||     .++|+.|.+.++  | .+||.+|++||||||.|..
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYG-----EGNWAAISKNYP--F-VNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHccC-----CCchHHHHhhcC--C-CCCCHHHHHHHHHHHhccC
Confidence            35677999999999999999999     789999998765  3 7999999999999998753

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.36  E-value=1.8e-13  Score=113.45  Aligned_cols=51  Identities=29%  Similarity=0.766  Sum_probs=47.0

Q ss_pred             cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      .++++|.+|+.+|+||+||  +|+.+||..|++++....|+|+||||.|..++
T Consensus         6 ~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~   56 (66)
T 1xwh_A            6 KNEDECAVCRDGGELICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT   56 (66)
T ss_dssp             SCCCSBSSSSCCSSCEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred             CCCCCCccCCCCCCEEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence            3678999999999999999  99999999999999989999999999997543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.35  E-value=2.5e-13  Score=111.36  Aligned_cols=52  Identities=33%  Similarity=0.782  Sum_probs=47.8

Q ss_pred             cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750          422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS  475 (798)
Q Consensus       422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka  475 (798)
                      .++++|.+|+.+|+||+||  +|+.+||..|++++....|+|+||||.|..+..
T Consensus         7 ~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   58 (61)
T 1mm2_A            7 HHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCCCcCCCCCCCCCEEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence            4678899999999999999  999999999999999999999999999986543

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.35  E-value=3.1e-13  Score=119.39  Aligned_cols=53  Identities=21%  Similarity=0.528  Sum_probs=48.4

Q ss_pred             CcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750          421 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS  475 (798)
Q Consensus       421 ~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka  475 (798)
                      -.++++|.+|+.+|+||+||  +||.+||..|+.|+....|+|+||||.|.+...
T Consensus        22 d~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~   74 (88)
T 1fp0_A           22 DDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   74 (88)
T ss_dssp             SSSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCcCcCcCCCCCEEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence            34678999999999999999  999999999999999999999999999986543

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.33  E-value=5.6e-13  Score=109.30  Aligned_cols=52  Identities=31%  Similarity=0.763  Sum_probs=47.7

Q ss_pred             CCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       420 ~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +-.++++|.+|+.+|+||+||  +|+.+||..|++++....|+|+||||.|...
T Consensus         7 ~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            7 ETDHQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SSCCCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             cCCCCCCCccCCCCCcEEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            345678999999999999999  9999999999999988899999999999754

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.32  E-value=3.3e-13  Score=109.72  Aligned_cols=48  Identities=42%  Similarity=0.877  Sum_probs=45.3

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY  472 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y  472 (798)
                      ++++|.+|+.+|+||+||  +|+.+||..|++++....|+|+||||.|..
T Consensus         4 ~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~   51 (60)
T 2puy_A            4 HEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD   51 (60)
T ss_dssp             CCSSCTTTCCCSSCEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred             CCCCCcCCCCCCcEEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence            568999999999999999  999999999999999999999999999963

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=9e-13  Score=105.99  Aligned_cols=49  Identities=41%  Similarity=0.849  Sum_probs=46.0

Q ss_pred             CcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          421 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       421 ~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      -.++++|.+|+.+|+||+||  +|+.+||..|+++++...|+|+||||.|.
T Consensus         6 ~~~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~   54 (56)
T 2yql_A            6 SGHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQ   54 (56)
T ss_dssp             CSSCCSCSSSCCSSCCEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred             CCCCCCCccCCCCCeEEEcC--CCCcceECccCCCCcCCCCCCceEChhhh
Confidence            45678999999999999999  99999999999999999999999999995

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-12  Score=109.66  Aligned_cols=49  Identities=20%  Similarity=0.406  Sum_probs=45.5

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +...|.+|+.+|+||+||  +|+.+||..|+.++....|+|+||||.|.-.
T Consensus        11 ~~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           11 PGARCGVCGDGTDVLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             TTCCCTTTSCCTTCEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCcCCCCCCCeEEECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence            456799999999999999  9999999999999999999999999999743

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.26  E-value=1.9e-12  Score=124.10  Aligned_cols=49  Identities=29%  Similarity=0.731  Sum_probs=46.3

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      ++++|.+|+.+|+|||||  +||.+||..|++++....|+|+||||.|...
T Consensus         3 ~~~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   51 (184)
T 3o36_A            3 NEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL   51 (184)
T ss_dssp             SCSSCTTTCCCSSCEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCccccCCCCCeeeecC--CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence            678999999999999999  9999999999999999999999999999854

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.24  E-value=2.9e-12  Score=125.27  Aligned_cols=51  Identities=27%  Similarity=0.667  Sum_probs=47.1

Q ss_pred             cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      .++++|..|+.+|+|||||  +||.+||..|++++....|+|+||||.|.-..
T Consensus         5 ~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCCEEEEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCCCceEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            3668899999999999999  99999999999999999999999999998543

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.20  E-value=1.2e-11  Score=97.94  Aligned_cols=52  Identities=40%  Similarity=0.696  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ++.+||+||++.|+.+|++||     .++|+.|...++  | .+||.++++++|+||.|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHcC--C-CCCCHHHHHHHHHHHHcc
Confidence            467999999999999999999     789999999765  3 489999999999999986

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.20  E-value=1.9e-11  Score=101.45  Aligned_cols=58  Identities=38%  Similarity=0.639  Sum_probs=51.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.++++.+||.||++.|+.+|++||     .++|+.|...++  | .+||.++++++|+|+.+..
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHC-----CCcHHHHHHHcC--c-CCCCHHHHHHHHHHHcCCC
Confidence            44578889999999999999999999     789999999765  3 4999999999999998754

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.18  E-value=8e-12  Score=121.60  Aligned_cols=48  Identities=23%  Similarity=0.629  Sum_probs=45.8

Q ss_pred             cccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          424 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       424 ~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +++|..|+.+|+|||||  +||.+||..|+.++....|+|+|+||.|...
T Consensus         2 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCCSSCCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCCCceeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence            57899999999999999  9999999999999999999999999999866

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.17  E-value=5.7e-12  Score=106.82  Aligned_cols=52  Identities=33%  Similarity=0.714  Sum_probs=46.1

Q ss_pred             CCCcccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          419 SGWTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       419 s~~~~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      +...+.++|.+|+.+|     +||+||  +|+++||..|++++.  .|+|+||||.|..++
T Consensus        11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~~   67 (71)
T 2ku3_A           11 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR   67 (71)
T ss_dssp             CCCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSS--CCSSCCCCHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCc--CCCCCcCCccCcCcC
Confidence            5667889999999886     999999  999999999999984  789999999997543

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=99.15  E-value=1.2e-11  Score=117.43  Aligned_cols=63  Identities=22%  Similarity=0.517  Sum_probs=50.9

Q ss_pred             ccchhhhccCCccccCCCcccccccccCCCCcEEecCCCCCcccccccccCCCCc------c-CCCCCccCccccccch
Q 003750          404 FLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVK------F-DEKGNFHCPFCAYTLS  475 (798)
Q Consensus       404 fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~------~-~peGdW~CP~C~y~ka  475 (798)
                      |++...+.+.|.       ++++|..|+.||+|||||  +||++||..|+.+++.      . .|+|+|+||.|..+..
T Consensus        50 y~~~~~~~d~Dg-------~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl  119 (142)
T 2lbm_A           50 YMSDDISRDSDG-------MDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL  119 (142)
T ss_dssp             HHHSCCCBCTTS-------CBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred             HhcCCceecCCC-------CCCeecccCCCCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence            555555544433       578999999999999999  9999999999998763      1 5899999999987644

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=1e-11  Score=108.72  Aligned_cols=52  Identities=33%  Similarity=0.714  Sum_probs=46.0

Q ss_pred             CCCcccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          419 SGWTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       419 s~~~~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      ....++++|.+|+.+|     +||+||  +|+.+||..|++++.  .|+|+||||.|....
T Consensus        20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~   76 (88)
T 2l43_A           20 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR   76 (88)
T ss_dssp             CCCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred             CcCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc--cCCCceECccccCcc
Confidence            3456789999999998     999999  999999999999984  789999999997543

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.12  E-value=1.4e-11  Score=101.01  Aligned_cols=52  Identities=17%  Similarity=0.599  Sum_probs=45.6

Q ss_pred             cccccccccCCC-----CcEEecCCCCCcccccccccCCCCcc---CCCCCccCccccccch
Q 003750          422 TEQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVKF---DEKGNFHCPFCAYTLS  475 (798)
Q Consensus       422 ~~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~~---~peGdW~CP~C~y~ka  475 (798)
                      .++++|.+|+.+     |+||+||  +|+.+||..|+++++..   +|+|+||||.|.+..+
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~   63 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT   63 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence            456899999988     9999999  99999999999998654   4899999999986654

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.7e-11  Score=106.71  Aligned_cols=50  Identities=28%  Similarity=0.656  Sum_probs=45.2

Q ss_pred             CCcccccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          420 GWTEQNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       420 ~~~~~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      ...+.+.|.+|+.+|.   ||+||  +|+.+||..|+++++...|+|+||||.|.
T Consensus        12 ~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~   64 (92)
T 2e6r_A           12 QFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCI   64 (92)
T ss_dssp             CCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred             hccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCc
Confidence            4455668999999884   99999  99999999999999999999999999995

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.10  E-value=2.5e-11  Score=95.39  Aligned_cols=45  Identities=33%  Similarity=0.729  Sum_probs=41.1

Q ss_pred             cccccCCCC---cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750          426 LCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY  472 (798)
Q Consensus       426 ~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y  472 (798)
                      .|.+|+.+|   +||+||  +|+.+||..|++++....|+|+||||.|..
T Consensus         2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588999766   699999  999999999999998899999999999963

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.10  E-value=5e-11  Score=108.33  Aligned_cols=53  Identities=26%  Similarity=0.713  Sum_probs=46.9

Q ss_pred             CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      ....++++|..|+.+|+||+||..+||.+||..||+  +...|+|+||||.|.+.
T Consensus        10 ~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~   62 (107)
T 4gne_A           10 PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD   62 (107)
T ss_dssp             CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred             CcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence            456788999999999999999977899999999999  55678999999998643

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.08  E-value=2.2e-11  Score=106.42  Aligned_cols=49  Identities=27%  Similarity=0.528  Sum_probs=43.9

Q ss_pred             ccccccccCCC-----CcEEecCCCCCcccccccccCCCCc----cCCCCCccCcccccc
Q 003750          423 EQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVK----FDEKGNFHCPFCAYT  473 (798)
Q Consensus       423 ~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~----~~peGdW~CP~C~y~  473 (798)
                      ++.+|.+|+.+     |+||+||  +|+.+||..|+++++.    .+|+|+||||.|...
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~   72 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             CCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence            46789999987     8999999  9999999999999976    389999999999643

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=98.98  Aligned_cols=46  Identities=28%  Similarity=0.613  Sum_probs=42.7

Q ss_pred             cccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCC-CccCcccc
Q 003750          424 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA  471 (798)
Q Consensus       424 ~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~  471 (798)
                      +..|.+|+.   +|+||+||  +|+.+||..||++++...|+| +||||.|.
T Consensus        26 ~c~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           26 SCSCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSCSSSCCCCCSTTEEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred             CCCCcCcCCcCCCCCEEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence            448999994   89999999  999999999999999999999 99999996

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=98.99  E-value=2.2e-10  Score=96.62  Aligned_cols=45  Identities=29%  Similarity=0.680  Sum_probs=41.3

Q ss_pred             cccccC---CCCcEEecCCCCCcccccccccCCCCccCCCC-CccCccccc
Q 003750          426 LCVKCN---KDGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCAY  472 (798)
Q Consensus       426 ~C~~C~---~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~y  472 (798)
                      .|.+|+   .+|+||+||  +|+.+||..||++++...|+| +||||.|..
T Consensus        20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            577888   478999999  999999999999999999999 999999973

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=94.30  Aligned_cols=44  Identities=30%  Similarity=0.707  Sum_probs=39.7

Q ss_pred             cccccCCC---CcEEecCCCCCcccccccccCCCCccCCCCC-ccCcccc
Q 003750          426 LCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKFDEKGN-FHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~~---GqLLcCD~~gCP~ayH~~Clg~~~~~~peGd-W~CP~C~  471 (798)
                      .|.+|+..   ++||+||  +|+.+||..|+++++...|+|+ ||||.|.
T Consensus        28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred             cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence            46667665   6799999  9999999999999999999999 9999996

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.83  E-value=1.7e-09  Score=97.45  Aligned_cols=44  Identities=30%  Similarity=0.778  Sum_probs=41.0

Q ss_pred             cccccCCCC----cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          426 LCVKCNKDG----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~~G----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +|.+|+..|    +||+||  +|+.+||..|+.++....|+|+||||.|.
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~  110 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICR  110 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred             ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence            688998764    899999  99999999999999999999999999996

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.82  E-value=1.2e-09  Score=98.78  Aligned_cols=50  Identities=34%  Similarity=0.779  Sum_probs=44.0

Q ss_pred             CCcccc--cccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          420 GWTEQN--LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       420 ~~~~~d--~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      .|.=.+  .|.+|+.   +|+||+||  +|+.+||..|+++++...|+|+||||.|.
T Consensus        52 ~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~  106 (114)
T 2kwj_A           52 KWQCIECKSCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCW  106 (114)
T ss_dssp             TCCCGGGCCCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred             ccCccccCccCcccccCCCCceEEcC--CCCccccccccCCCccCCCCCCeECcccc
Confidence            454333  6889988   68999999  99999999999999999999999999995

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.81  E-value=1.5e-09  Score=109.69  Aligned_cols=46  Identities=28%  Similarity=0.640  Sum_probs=39.4

Q ss_pred             cccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCC-CccCcccc
Q 003750          424 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA  471 (798)
Q Consensus       424 ~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~  471 (798)
                      ...|..|+.   +|.||+||  +|+.+||..|++||+...|+| +||||.|.
T Consensus       174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred             CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence            458999997   78999999  999999999999999999999 99999996

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.76  E-value=7e-09  Score=87.86  Aligned_cols=54  Identities=24%  Similarity=0.728  Sum_probs=43.3

Q ss_pred             cCCCcccccccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCccccccc
Q 003750          418 TSGWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       418 ~s~~~~~d~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      ..+-.+..+| .|+.  .|.+|+||.-.|++ .||..|||..  ..|.|.||||.|..++
T Consensus        10 ~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~--~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A           10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQES   66 (71)
T ss_dssp             CCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS--SCCSSCCCCTTTSSCS
T ss_pred             ccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC--cCCCCCEECCCCCccc
Confidence            4455677899 6999  89999999333995 9999999965  4578999999997653

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.75  E-value=4.9e-09  Score=93.51  Aligned_cols=48  Identities=29%  Similarity=0.726  Sum_probs=44.2

Q ss_pred             cccccccccCCCCcE---EecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          422 TEQNLCVKCNKDGQL---LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       422 ~~~d~C~~C~~~GqL---LcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      .++++|.+|+.+|+|   |+|+  +||.+||..||+++....+.|.|+||.|.
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence            477899999999998   9999  99999999999998776788999999995

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.72  E-value=1.3e-09  Score=102.07  Aligned_cols=50  Identities=24%  Similarity=0.579  Sum_probs=43.0

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCC------c-cCCCCCccCccccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------K-FDEKGNFHCPFCAYTL  474 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~------~-~~peGdW~CP~C~y~k  474 (798)
                      ++++|..|+.||+|||||  +||++||..|+.+.+      . ..|+|+|+|+.|.-+.
T Consensus        56 ~~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p  112 (129)
T 3ql9_A           56 MDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP  112 (129)
T ss_dssp             CBSSCTTTCCCSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred             CCCcCeecCCCCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence            567899999999999999  999999999999752      2 2389999999997553

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.71  E-value=1.2e-08  Score=80.08  Aligned_cols=49  Identities=31%  Similarity=0.612  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++.+||.||++.|+.+|++||     .++|+.|...     +++||..+++++|+++..
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNG-----TDDWKVIANY-----LPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHT-----STTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence            467999999999999999999     6899999984     368999999999999864

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.70  E-value=5.8e-09  Score=87.55  Aligned_cols=50  Identities=30%  Similarity=0.645  Sum_probs=43.6

Q ss_pred             CcccccccccCCC--C-cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750          421 WTEQNLCVKCNKD--G-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY  472 (798)
Q Consensus       421 ~~~~d~C~~C~~~--G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y  472 (798)
                      -.+..+|.+|+..  | .+|+||  +|+..||..|||++....|.|+||||.|..
T Consensus        15 ~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~   67 (75)
T 2k16_A           15 GNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCAN   67 (75)
T ss_dssp             SCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred             CCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccC
Confidence            4556789999885  4 799999  999999999999998877889999999963

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.68  E-value=2.5e-08  Score=80.50  Aligned_cols=52  Identities=31%  Similarity=0.578  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .++.+||.||++.|+++|++||     .++|+.|...     +.+||..+++++|+++.+-.
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFG-----QQDWKFLASH-----FPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTC-----TTCHHHHHHH-----CSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----ccCCCHHHHHHHHHHHcCCc
Confidence            4677999999999999999999     6799999985     36899999999999987643

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.67  E-value=5.4e-09  Score=85.66  Aligned_cols=51  Identities=29%  Similarity=0.845  Sum_probs=39.7

Q ss_pred             CCcccccccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCcccccc
Q 003750          420 GWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +-.+..+| .|++  +|.+|.||.-.||+ .||..|+|.+  ..|.|.||||.|..+
T Consensus         5 d~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~--~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            5 GSNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT--TKPKGKWFCPRCVQE   58 (59)
T ss_dssp             ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHCC
T ss_pred             CCCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc--cCCCCCEECcCccCc
Confidence            34566788 8999  89999999333995 9999999965  457799999999644

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.67  E-value=9.6e-09  Score=91.65  Aligned_cols=54  Identities=28%  Similarity=0.734  Sum_probs=47.3

Q ss_pred             CCCcccc--cccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750          419 SGWTEQN--LCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       419 s~~~~~d--~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      ..|.=.+  +|.+|+..|.   ||.||  +|+.+||..|+.+++...|+|+||||.|...+
T Consensus        47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           47 AGWQCPECKVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             TTCCCTTTCCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             cCccCCcCCcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence            4566554  7999999886   99999  99999999999999999999999999997654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.63  E-value=3.4e-08  Score=77.63  Aligned_cols=49  Identities=33%  Similarity=0.615  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++.+||.||++.|+.+|++||     .++|..|...     +.+||..+.+++|.|...
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-----cChHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence            467999999999999999999     5789999974     369999999999999764

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.63  E-value=8.9e-09  Score=84.41  Aligned_cols=51  Identities=25%  Similarity=0.754  Sum_probs=38.9

Q ss_pred             CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccccc
Q 003750          420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +-.+..+| +|+.  +|.+|.||.-.|| ..||..|||.+  ..|.|.||||.|..+
T Consensus         6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~--~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A            6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQE   59 (60)
T ss_dssp             ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHC-
T ss_pred             CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC--cCCCCCEECcCccCc
Confidence            34456788 7998  8999999922399 69999999965  457899999999643

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.59  E-value=5e-08  Score=86.64  Aligned_cols=47  Identities=21%  Similarity=0.576  Sum_probs=39.5

Q ss_pred             cccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750          426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS  475 (798)
Q Consensus       426 ~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka  475 (798)
                      +|..|..+|.||+||  +|+..||..|++++...+| +.||||.|.-+..
T Consensus        32 iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~~   78 (98)
T 2lv9_A           32 ICGFTHDDGYMICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRNL   78 (98)
T ss_dssp             TTSCCSCSSCEEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSCC
T ss_pred             ECCCccCCCcEEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCCC
Confidence            466666789999999  9999999999999877676 4899999975543

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.56  E-value=7.2e-08  Score=85.66  Aligned_cols=52  Identities=25%  Similarity=0.740  Sum_probs=41.5

Q ss_pred             CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCccccccc
Q 003750          420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYTL  474 (798)
Q Consensus       420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~k  474 (798)
                      +-.+..+| +|+.  .|.+|+||.-.|| -.||..|||...  .|.|.||||.|..++
T Consensus        32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~--~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQES   86 (91)
T ss_dssp             CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSS--CCCSSCCCTTTCCCC
T ss_pred             CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCc--CCCCCEECcCccCcC
Confidence            33456788 9999  8999999922399 589999999753  567999999998654

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.53  E-value=2.3e-08  Score=82.72  Aligned_cols=51  Identities=29%  Similarity=0.755  Sum_probs=40.2

Q ss_pred             CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccccc
Q 003750          420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      +-.+..+| .|+.  .|.+|+||.-.|| ..||..|||.+.  .|.|.||||.|..+
T Consensus         7 d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~--~p~~~w~Cp~C~~~   60 (62)
T 2g6q_A            7 DPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTY--KPKGKWYCPKCRGD   60 (62)
T ss_dssp             ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS--CCSSCCCCHHHHTC
T ss_pred             CCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCc--CCCCCEECcCcccC
Confidence            33456788 8999  8999999933399 899999999764  47899999999754

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.52  E-value=8.1e-08  Score=78.03  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      ..+.+||+||++.|+++|++||     .++|..|....     .+||..+.+++|.++.....
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~-----~~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCG-----FGNWQDVANQM-----CTKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTC-----TTCHHHHHHHH-----TTSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC-----cCcHHHHHHHh-----CCCCHHHHHHHHHHHccCCC
Confidence            4667999999999999999999     68999999853     58999999999999876543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=1.5e-07  Score=78.23  Aligned_cols=51  Identities=27%  Similarity=0.518  Sum_probs=45.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .++.+||.||++.|+.+|++||     .++|+.|...     +.+||..+.+++|++..+-
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~L~p   57 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYG-----KNQWSRIASL-----LHRKSAKQCKARWYEWLDP   57 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTC-----SSCHHHHHHH-----STTCCHHHHHHHHHHTSCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHH-----hcCCCHHHHHHHHHHHcCC
Confidence            4677999999999999999999     6899999984     3589999999999998654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.38  E-value=2.1e-07  Score=75.37  Aligned_cols=47  Identities=21%  Similarity=0.471  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCC-CCCcchhHHHHhhhc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFS-GRTAIDLKDKWRNMC  791 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~-~RT~VDLKDKWRNL~  791 (798)
                      +.+||++|++.|+++|++||     .++|..|...     .. +||..+.+++|.++.
T Consensus         9 ~~~WT~eED~~L~~~v~~~G-----~~~W~~IA~~-----~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETLG-----LGNWADIADY-----VGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTT-----TTCHHHHHHH-----HCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHH-----HCCCCCHHHHHHHHHHHc
Confidence            45899999999999999999     7899999974     34 899999999998863

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.35  E-value=1.9e-07  Score=78.22  Aligned_cols=51  Identities=31%  Similarity=0.600  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .++.+||.||++.|+++|++||     . +|+.|...     +.+||..++|.+|.++.++.
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G-----~-~W~~Ia~~-----~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFG-----R-RWTKISKL-----IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTC-----S-CHHHHHHH-----HSSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC-----c-CHHHHHHH-----cCCCCHHHHHHHHHHHHHHH
Confidence            4677999999999999999999     3 99999983     36899999999999876643

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.34  E-value=3e-07  Score=78.64  Aligned_cols=49  Identities=31%  Similarity=0.347  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      -++.+||+||++.|++.|++||+      +|+.|...     + +||..++|++|+.|.+.
T Consensus        21 i~k~~wT~EED~~L~~l~~~~G~------kW~~IA~~-----l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           21 NHVGKYTPEEIEKLKELRIKHGN------DWATIGAA-----L-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHSS------CHHHHHHH-----H-TSCHHHHHHHHHHCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC------CHHHHHHH-----h-CCCHHHHHHHHHHHHHH
Confidence            35679999999999999999993      69999973     4 89999999999998764

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.33  E-value=7.3e-08  Score=87.15  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=39.0

Q ss_pred             cccccccCCCC----------cEEecCCCCCcccccccccCCCCc---cCCCCCccCcccc
Q 003750          424 QNLCVKCNKDG----------QLLSCSSSTCPLAVHENCLGFPVK---FDEKGNFHCPFCA  471 (798)
Q Consensus       424 ~d~C~~C~~~G----------qLLcCD~~gCP~ayH~~Clg~~~~---~~peGdW~CP~C~  471 (798)
                      +++|..|..++          +||.|+  +||.+||..||++++.   ..++|.|+||.|.
T Consensus         1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence            36788887654          899999  9999999999998743   4678999999994

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.32  E-value=2.5e-07  Score=82.10  Aligned_cols=50  Identities=28%  Similarity=0.747  Sum_probs=38.9

Q ss_pred             CCCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcc-cc
Q 003750          419 SGWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPF-CA  471 (798)
Q Consensus       419 s~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~-C~  471 (798)
                      .+-.+..+| .|+.  .|.+|+||.-.|| -.||..|||...  .|.|.||||. |.
T Consensus        21 ~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~--~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           21 NNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQ--APKGKWYCSKDCK   74 (90)
T ss_dssp             ---CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSS--CTTSCCCSSHHHH
T ss_pred             CCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCc--CCCCCccCChhhc
Confidence            445566788 7996  8999999944488 589999999764  5779999999 84

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3.5e-07  Score=76.72  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=44.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ..+.+||.||++.|+++|++||......++|..|...     ..+||..+.+.+|.++.+..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~-----~~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-----LGNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH-----HSSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH-----hCCCCHHHHHHHHHHHHHHH
Confidence            3566999999999999999999210001799999984     36899999999997765543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.30  E-value=6e-07  Score=78.90  Aligned_cols=50  Identities=26%  Similarity=0.650  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|+.+|++||      .+|+.|..     ++++||..++|++|+++.|+.
T Consensus        55 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           55 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAK-----LLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHS------SCHHHHHT-----TCTTCCHHHHHHHHHHHTC--
T ss_pred             cccCCCHHHHHHHHHHHHHhC------CCHHHHHH-----HcCCCCHHHHHHHHHHHHhcc
Confidence            567999999999999999999      48999996     347999999999999998763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.20  E-value=9.2e-07  Score=80.75  Aligned_cols=50  Identities=34%  Similarity=0.814  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|+.+|++||      .+|+.|..     ++++||..++|++|++|.++.
T Consensus        61 ~~~~WT~eEd~~L~~~v~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           61 SHTPWTAEEDALLVQKIQEYG------RQWAIIAK-----FFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC------SCHHHHHT-----TSTTCCHHHHHHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHHHHHC------cCHHHHHH-----HcCCCCHHHHHHHHHHHHHhc
Confidence            456999999999999999999      48999997     347999999999999998765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.18  E-value=1.4e-06  Score=79.24  Aligned_cols=50  Identities=26%  Similarity=0.643  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|+.+|++||      .+|+.|...     +++||..++|++|+++.|+.
T Consensus        78 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           78 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC------SCHHHHGGG-----STTCCHHHHHHHHHTTTTC-
T ss_pred             ccccCCHHHHHHHHHHHHHHC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhcc
Confidence            567999999999999999999      489999973     47999999999999998863

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.17  E-value=3.1e-07  Score=82.75  Aligned_cols=48  Identities=25%  Similarity=0.538  Sum_probs=39.7

Q ss_pred             cccccccccCCC---------CcEEecCCCCCcccccccccCCCC---ccCCCCCccCcccc
Q 003750          422 TEQNLCVKCNKD---------GQLLSCSSSTCPLAVHENCLGFPV---KFDEKGNFHCPFCA  471 (798)
Q Consensus       422 ~~~d~C~~C~~~---------GqLLcCD~~gCP~ayH~~Clg~~~---~~~peGdW~CP~C~  471 (798)
                      ....+|..|.++         |+||.|+  +|+.+||..||+..+   ..++.|+|+||.|.
T Consensus         3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            3 EPIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             ccCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            356789999653         5899999  999999999999753   24578999999995

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.17  E-value=1.7e-06  Score=76.02  Aligned_cols=49  Identities=31%  Similarity=0.600  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++.+||.||++.|+.+|++||     .++|..|...     +++||..+.+++|++...
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~   51 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN   51 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-----CCcHHHHhhh-----hcCCCHHHHHHHHHhccC
Confidence            467999999999999999999     6789999973     479999999999999764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=74.91  Aligned_cols=49  Identities=18%  Similarity=0.319  Sum_probs=43.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      +..+.+||.+|+..|+++|++||      ++|.+|.+.     ..+||..+.+.+|.++.
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G------~~W~~IA~~-----v~~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYK------DDWNKVSEH-----VGSRTQDECILHFLRLP   63 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSS------SCHHHHHHH-----HSSCCHHHHHHHHTTSC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhC------CCHHHHHHH-----cCCCCHHHHHHHHHHhc
Confidence            45677999999999999999999      699999984     25899999999999983

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.15  E-value=6.6e-07  Score=79.49  Aligned_cols=51  Identities=20%  Similarity=0.655  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      ++.+||.||++.|+.+|++||      .+|+.|...     +++||..++|++|+.|.++..
T Consensus        52 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           52 RTDPWSPEEDMLLDQKYAEYG------PKWNKISKF-----LKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTC------SCHHHHHHH-----HSSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhhHH
Confidence            467999999999999999999      389999973     379999999999999987643

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.11  E-value=3.2e-06  Score=72.30  Aligned_cols=54  Identities=19%  Similarity=0.471  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      -.+.+||.+|...|+.+|++||.  +...+|.+|...     .++||..+.+.+|.+|++.
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~-----vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPR--GSSDCWDKIARC-----VPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGG-----CSSSCHHHHHHHHHHHHSS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHHc
Confidence            45678999999999999999992  224689999974     4689999999999999764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.08  E-value=2.8e-06  Score=77.94  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|+.+|.+||      .+|+.|..     ++++||..++|++|+++.++.
T Consensus        53 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           53 VKHAWTPEEDETIFRNYLKLG------SKWSVIAK-----LIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             CCSCCCHHHHHHHHHHHHHSC------SCHHHHTT-----TSTTCCHHHHHHHHHHTTGGG
T ss_pred             cCCCCCHHHHHHHHHHHHHHC------cCHHHHHH-----HcCCCCHHHHHHHHHHHHHHH
Confidence            456899999999999999999      58999986     347999999999999988764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=1.8e-06  Score=70.88  Aligned_cols=47  Identities=28%  Similarity=0.439  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++.+||.||++.|+.+|++||     . +|..|.. .     .+||..+.+++|.++.+
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g-----~-~W~~Ia~-~-----~gRt~~qcr~Rw~~~l~   54 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMP-----T-QWRTIAP-I-----IGRTAAQCLEHYEFLLD   54 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCT-----T-CHHHHHH-H-----HSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcC-----C-CHHHHhc-c-----cCcCHHHHHHHHHHHhC
Confidence            567899999999999999999     3 9999997 2     36999999999998865

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.07  E-value=3.5e-06  Score=76.88  Aligned_cols=51  Identities=33%  Similarity=0.600  Sum_probs=44.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +..++.+||.||++.|+.+|++||     . +|+.|...     +.+||..+++++|+|...
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G-----~-~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHG-----S-DWKMIAAT-----FPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHT-----T-CHHHHHHT-----CTTCCHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-----C-CHHHHHHH-----cCCCCHHHHHHHHhhhcc
Confidence            345778999999999999999999     4 99999873     368999999999999654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.05  E-value=3.4e-06  Score=76.80  Aligned_cols=50  Identities=28%  Similarity=0.614  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      .++.+||.||++.|+.+|++||     .++|..|...     +++||..+++++|.+...
T Consensus        25 ~~k~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C           25 LNKGPWTKEEDQRVIEHVQKYG-----PKRWSDIAKH-----LKGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTC-----SCCHHHHHHH-----SSSCCHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHH-----hcCCcHHHHHHHHHHhcc
Confidence            3567999999999999999999     5789999974     369999999999999764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.01  E-value=4.3e-06  Score=74.26  Aligned_cols=48  Identities=23%  Similarity=0.500  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+||.||++.|+.+|++||     .++|..|...     .++||..+..++|+|...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~   48 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYG-----AKDWIRISQL-----MITRNPRQCRERWNNYIN   48 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHC-----SSCHHHHHHH-----TTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----CCCHHHHhhh-----cCCCCHHHHHHHHHHHHc
Confidence            45899999999999999999     6899999974     368999999999999764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.96  E-value=7.8e-06  Score=76.79  Aligned_cols=51  Identities=25%  Similarity=0.624  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .++.+||.+|++.|+.+|++||      .+|+.|..     |+++||..++|.+|+.|.|+.
T Consensus       108 ~~~~~WT~eEd~~L~~~~~~~g------~~W~~Ia~-----~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          108 VKKTSWTEEEDRIIYQAHKRLG------NRWAEIAK-----LLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC------SCHHHHHT-----TSTTCCHHHHHHHHHTTTCC-
T ss_pred             ccccCCChHHHHHHHHHHHHHC------CCHHHHHH-----HCCCCCHHHHHHHHHHHHhcc
Confidence            3567999999999999999999      48999997     347999999999999998863

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.91  E-value=1e-05  Score=74.16  Aligned_cols=48  Identities=23%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+||.||++.|+.+|++||     .++|..|..     +.++||..+..++|+|...
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~-----~~~~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENG-----PQNWPRITS-----FLPNRSPKQCRERWFNHLD   49 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-----SCCGGGGTT-----SCTTSCHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHhC-----cCCHHHHHH-----HHCCCCHHHHHHHHhhccC
Confidence            46899999999999999999     689999986     3368999999999998764

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=4.9e-06  Score=70.33  Aligned_cols=46  Identities=33%  Similarity=0.957  Sum_probs=37.3

Q ss_pred             ccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccc
Q 003750          423 EQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       423 ~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +..+|+ |+.  .|.+|.||.-.|| .-||..|||...  .|.|.||||.|.
T Consensus         5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~--~p~~~w~Cp~C~   53 (70)
T 1x4i_A            5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE--APKGKWYCPQCT   53 (70)
T ss_dssp             CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred             CCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc--CCCCCEECCCCC
Confidence            445775 875  7899999944476 689999999865  478999999996

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.80  E-value=3.3e-06  Score=79.92  Aligned_cols=49  Identities=22%  Similarity=0.588  Sum_probs=39.7

Q ss_pred             cccccccccCC----CCcEEecCCCCCcccccccccCCCCc-cCCCCCccCcccccc
Q 003750          422 TEQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAYT  473 (798)
Q Consensus       422 ~~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C~y~  473 (798)
                      .+..+| .|+.    +|.+++||  +|+..||..|+|.+.. ....+.|+||.|.-.
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQST   59 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence            456788 9987    46699999  9999999999998743 345789999999754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.00  E-value=2.9e-06  Score=74.15  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=44.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ..+.+||.||++.|+.+|++||     . +|..|...     +.+||..++|.+|.++.++.
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G-----~-~W~~IA~~-----l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHG-----R-NWSAIARM-----VGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            3567999999999999999999     3 79999863     37999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.78  E-value=2.6e-05  Score=73.19  Aligned_cols=50  Identities=30%  Similarity=0.577  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ++.+||.||++.|+.+|++||     .++|..|...     +++||..+++++|++....
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~p  106 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLNP  106 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC-----SCCHHHHHHT-----STTCCHHHHHHHHHHTTCT
T ss_pred             CCCCCChHHHHHHHHHHHHhC-----cccHHHHHHH-----cCCCCHHHHHHHHHHHhCc
Confidence            567999999999999999999     5789999873     4799999999999997653

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.61  E-value=2.1e-05  Score=64.12  Aligned_cols=51  Identities=22%  Similarity=0.585  Sum_probs=41.0

Q ss_pred             cccccccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCccccccc
Q 003750          422 TEQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYTL  474 (798)
Q Consensus       422 ~~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~y~k  474 (798)
                      .+..+|..|++    +|..+.||  .|..=||..|+|.+....+ .+.|+||.|.-++
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~   59 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence            34568989986    47799999  9999999999999854332 4899999997654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=97.51  E-value=6.4e-05  Score=66.98  Aligned_cols=51  Identities=22%  Similarity=0.523  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ..+||.+|+..|+.++++||.  +...+|.+|...     .++||..+.+.+|.+|.+
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~--~~~~rW~~IA~~-----vpGRT~~q~k~ry~~l~~   58 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDK--DTPDRWANVARA-----VEGRTPEEVKKHYEILVE   58 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHH-----STTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHH
Confidence            458999999999999999982  224689999984     368999999999999863

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.00015  Score=59.28  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .|+...+||++|.+.+++|+.+||      .+|..|..     |.++||..++...|...+|.
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~g------k~w~~Ia~-----~l~~rt~~~~v~~Yy~~Kk~   59 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHP------KNFGLIAS-----YLERKSVPDCVLYYYLTKKN   59 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHST------TCHHHHHH-----HCTTSCHHHHHHHHHHHTCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhC------CCHHHHHH-----HcCCCCHHHHHHHHHHhcCC
Confidence            456778999999999999999999      48999986     34799999999999887765

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.36  E-value=2.8e-05  Score=69.16  Aligned_cols=50  Identities=20%  Similarity=0.603  Sum_probs=43.2

Q ss_pred             CCcccccccccC--CCCcEEecCCCCCcccccccccCCC------------CccCCCCCccCcccc
Q 003750          420 GWTEQNLCVKCN--KDGQLLSCSSSTCPLAVHENCLGFP------------VKFDEKGNFHCPFCA  471 (798)
Q Consensus       420 ~~~~~d~C~~C~--~~GqLLcCD~~gCP~ayH~~Clg~~------------~~~~peGdW~CP~C~  471 (798)
                      ...+++.|.+|+  ..+.|+.|.  .|.++||..||-..            ..-.+++-|.||+|.
T Consensus        11 ~~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           11 PVVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            345889999999  789999999  99999999999764            445578999999995

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=97.30  E-value=0.00018  Score=73.88  Aligned_cols=56  Identities=16%  Similarity=0.284  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ..+.+||.||++.|++.|++||+.-.+...|+.|..     ++++||.-++|++|++..++
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-----~LpGRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-----YVPNHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-----TSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-----HcCCCCHHHHHHHHHHHHhh
Confidence            456799999999999999999931001123999997     34799999999999997654

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.20  E-value=0.0002  Score=61.03  Aligned_cols=51  Identities=24%  Similarity=0.563  Sum_probs=40.5

Q ss_pred             ccccccccCC---CCcEEecCCCCCcccccccccCCCCcc-----CCCCCccCccccccc
Q 003750          423 EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKF-----DEKGNFHCPFCAYTL  474 (798)
Q Consensus       423 ~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~-----~peGdW~CP~C~y~k  474 (798)
                      ..-+| .|+.   +|..+.||...|..-||..|+|.+...     ...+.||||.|..++
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            45678 5887   488999997789999999999997542     224799999997543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.19  E-value=0.00025  Score=63.64  Aligned_cols=51  Identities=24%  Similarity=0.429  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhccC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .+||.||++.|.+.+++||      .+|..|.+.|.. -| .+||-.|||++|..++++
T Consensus        31 ~~WTkEETd~Lf~L~~~fd------lRW~vI~DRy~~~~~-~~Rt~EdLK~RyY~v~~~   82 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQF-KKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT------TCHHHHHHHSCTTTS-CCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhC------CCeeeehhhhccCCC-CCCCHHHHHHHHHHHHHH
Confidence            6999999999999999999      699999998752 12 579999999999776653

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.14  E-value=0.00012  Score=65.99  Aligned_cols=52  Identities=21%  Similarity=0.533  Sum_probs=41.3

Q ss_pred             ccccccCCC----CcEEecCCCCCcccccccccCCCCc------cCCCCCccCccccccchHH
Q 003750          425 NLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVK------FDEKGNFHCPFCAYTLSIS  477 (798)
Q Consensus       425 d~C~~C~~~----GqLLcCD~~gCP~ayH~~Clg~~~~------~~peGdW~CP~C~y~ka~~  477 (798)
                      ..|.+|.+.    |..+.|| .+|..=||..|+|.+..      -.|.+.|+||.|.-++...
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~   65 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS   65 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred             CCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCC
Confidence            468899875    7877776 49999999999999842      1577999999998765543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.09  E-value=0.00033  Score=59.70  Aligned_cols=52  Identities=23%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      +...||.||...|..+|.+|+  ++-..+|.+|...    +  +||..+++.+|..|.+.
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p--~~t~~RW~~IA~~----l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHE----L--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHH----H--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHH----h--CCCHHHHHHHHHHHHHh
Confidence            456899999999999999998  3335789999984    2  69999999999999765

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=96.97  E-value=0.00045  Score=58.03  Aligned_cols=49  Identities=22%  Similarity=0.518  Sum_probs=38.6

Q ss_pred             CcccccccccCC--CC-cEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          421 WTEQNLCVKCNK--DG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       421 ~~~~d~C~~C~~--~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      -.+.-+| .|+.  +| ..|.||  .|..=||..|+|.+....| +.||||.|.-+
T Consensus        16 ~~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s   67 (68)
T 3o70_A           16 FQGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS   67 (68)
T ss_dssp             TTTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred             CCCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcccCC-CcEECCCCCCC
Confidence            3445567 8887  34 599999  8999999999999875444 79999999643

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.90  E-value=0.00038  Score=58.31  Aligned_cols=47  Identities=30%  Similarity=0.664  Sum_probs=37.4

Q ss_pred             cccccccCC---CC-cEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          424 QNLCVKCNK---DG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       424 ~d~C~~C~~---~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      .-+| .|+.   +| ..|.||  .|-.=||..|+|........+.||||.|.-+
T Consensus        16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~   66 (72)
T 1wee_A           16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             ceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence            4578 4986   36 599999  9999999999999854334589999999643

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=96.88  E-value=0.00047  Score=57.37  Aligned_cols=49  Identities=24%  Similarity=0.604  Sum_probs=36.2

Q ss_pred             ccccccCC---CCcEEecCCCCCcccccccccCCCCccC----CCCCccCccccccc
Q 003750          425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFD----EKGNFHCPFCAYTL  474 (798)
Q Consensus       425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~----peGdW~CP~C~y~k  474 (798)
                      -.| .|+.   +|..+.||...|..-||..|+|.+....    ....||||.|..++
T Consensus        11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r   66 (68)
T 2rsd_A           11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR   66 (68)
T ss_dssp             ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred             EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence            456 5854   6899999944599999999999864321    12479999997554

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.54  E-value=0.001  Score=56.56  Aligned_cols=48  Identities=23%  Similarity=0.622  Sum_probs=37.7

Q ss_pred             ccccccccCC----CCcEEecCCCCCcccccccccCCCCcc-CCCCCccCcccccc
Q 003750          423 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCAYT  473 (798)
Q Consensus       423 ~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~-~peGdW~CP~C~y~  473 (798)
                      ..-+| .|+.    +|..+.||  .|..=||..|+|..... ...+.|+||.|.-.
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~   63 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred             CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence            33456 7887    57899999  99999999999997532 22479999999744

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=96.46  E-value=0.0005  Score=57.44  Aligned_cols=49  Identities=18%  Similarity=0.518  Sum_probs=38.2

Q ss_pred             cccccccccCCC----CcEEecCCCCCcccccccccCCCCc------cCCCCCccCcccc
Q 003750          422 TEQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVK------FDEKGNFHCPFCA  471 (798)
Q Consensus       422 ~~~d~C~~C~~~----GqLLcCD~~gCP~ayH~~Clg~~~~------~~peGdW~CP~C~  471 (798)
                      .....|.+|++.    ...+.|| .+|-.=||..|+|....      -.|.+.|+||.|.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD-~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCE-ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBT-TTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEecc-cCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            345679999973    3488999 49999999999999853      2478999999994

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.44  E-value=0.0038  Score=53.84  Aligned_cols=54  Identities=15%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR  796 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k  796 (798)
                      ..||.+|..+|..++.+|+  -+..++|.+|...     ..+||.-+.+.+|.-|.+....
T Consensus         9 ~~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~-----V~gKT~eE~~~hY~~l~~~~~s   62 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLP--KHKPGFWSEVAAA-----VGSRSPEECQRKYMENPRGKGS   62 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHH-----TTTSCHHHHHHHHHHSSSSSCC
T ss_pred             CCCCHHHHHHHHHHHHHCC--CCCccHHHHHHHH-----cCCCCHHHHHHHHHHHHhcccc
Confidence            4799999999999999998  2346899999984     3579999999999999776543

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.42  E-value=0.00054  Score=57.73  Aligned_cols=46  Identities=22%  Similarity=0.678  Sum_probs=36.8

Q ss_pred             ccccccCC---CCcEEecCCCCCcccccccccCCCCcc-----CCCCCccCcccccc
Q 003750          425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKF-----DEKGNFHCPFCAYT  473 (798)
Q Consensus       425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~-----~peGdW~CP~C~y~  473 (798)
                      -+| .|+.   +|..+.||  .|..=||..|+|.....     .+.+.||||.|..+
T Consensus        17 ~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A           17 LYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence            466 6887   36899999  99999999999998542     13589999999643

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=96.38  E-value=0.00082  Score=53.35  Aligned_cols=44  Identities=23%  Similarity=0.644  Sum_probs=33.2

Q ss_pred             ccccCC----CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          427 CVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       427 C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      |..|++    ++..+.||+ +|..=||..|+|.+......+.|+||.|.
T Consensus         5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence            455554    345899995 79999999999998543334899999994

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=96.18  E-value=0.0025  Score=50.44  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          433 DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       433 ~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +|..+.||  .|..=||..|+|.+....| +.|+||.|.
T Consensus        15 ~~~MI~Cd--~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~   50 (52)
T 3o7a_A           15 GRPMIECN--ECHTWIHLSCAKIRKSNVP-EVFVCQKCR   50 (52)
T ss_dssp             TCCEEECT--TTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred             CCCEEEcC--CCCccccccccCCCcccCC-CcEECcCCC
Confidence            46899999  8999999999999876444 799999995

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.12  E-value=0.005  Score=62.95  Aligned_cols=52  Identities=13%  Similarity=0.385  Sum_probs=45.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .+...+||++|.+.+++|+++||      ..|..|.+.     ..+||..+.|..|.+..|+.
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG------KDW~~IAk~-----VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS------SCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----cCCCCHHHHHHHHHHHHHHh
Confidence            35677999999999999999999      479999984     36899999999999888764

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=96.04  E-value=0.0044  Score=60.88  Aligned_cols=51  Identities=25%  Similarity=0.651  Sum_probs=39.1

Q ss_pred             ccccccCC---CC----cEEecCCCCCcccccccccCCCCc-------cCCCCCccCccccccchHH
Q 003750          425 NLCVKCNK---DG----QLLSCSSSTCPLAVHENCLGFPVK-------FDEKGNFHCPFCAYTLSIS  477 (798)
Q Consensus       425 d~C~~C~~---~G----qLLcCD~~gCP~ayH~~Clg~~~~-------~~peGdW~CP~C~y~ka~~  477 (798)
                      ++|.+|++   ++    ..++||  +|-.=||..|+|.+..       .++...|+||.|.-+....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~   67 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE   67 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred             CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence            57888876   23    499999  9999999999998742       1223589999999776543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.04  E-value=0.0097  Score=57.65  Aligned_cols=53  Identities=13%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhc---------CCCcCCCCCcchhHHHHhhhc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFG---------SSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~---------~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      ....||.+|...|+.||.|||     .|+|..|..+-         .+.|...++++.|+.+--.|.
T Consensus       133 ~~~~W~~~~D~~LL~Gi~k~G-----~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll  194 (211)
T 4b4c_A          133 FDIDWGKEDDSNLLIGIYEYG-----YGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLI  194 (211)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHC-----TTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHC-----cCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHH
Confidence            345799999999999999999     99999999752         122235677888988854443

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.80  E-value=0.0069  Score=54.50  Aligned_cols=50  Identities=24%  Similarity=0.444  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhcc
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ..||.||++.|.+.+++|+      .+|--|.+.|.. -| ..||-=|||++|-.+++
T Consensus        31 ~~WT~eETd~LfdLc~~fd------lRw~vI~DRy~~~~~-~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQF-KKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT------TCHHHHHHHCCTTTS-CCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC------CCeEEEeeccccCCC-CCCCHHHHHHHHHHHHH
Confidence            4799999999999999999      799999998752 22 58999999999966654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.76  E-value=0.0027  Score=54.40  Aligned_cols=61  Identities=23%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHh----hcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhccCCC
Q 003750          733 RKKVPWTAKEEEILKKGVQK----FASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCKGSP  795 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqK----yGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~Kks~  795 (798)
                      ++...||.+|+.+|+.....    |...+-....|..|...-.. -|  .||+.+.++||.||.+..-
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~--~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF--DRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHH
Confidence            45678999999999999864    32111235589999875211 14  6999999999999987643

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=95.74  E-value=0.0017  Score=71.73  Aligned_cols=46  Identities=26%  Similarity=0.706  Sum_probs=36.8

Q ss_pred             ccccccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccc
Q 003750          423 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCA  471 (798)
Q Consensus       423 ~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~  471 (798)
                      ..-+| .|+.    +|..+.||  .|.-=||..|+|......+ .+.||||.|.
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~   86 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCA   86 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred             CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCc
Confidence            33456 8886    57899999  9999999999999864322 3789999996

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=95.68  E-value=0.0028  Score=53.57  Aligned_cols=41  Identities=24%  Similarity=0.652  Sum_probs=33.5

Q ss_pred             ccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccc
Q 003750          429 KCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCA  471 (798)
Q Consensus       429 ~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~  471 (798)
                      .|+.    +|..|.||  .|..=||..|+|......+ ...|+||.|.
T Consensus        14 iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~   59 (75)
T 3kqi_A           14 VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCE   59 (75)
T ss_dssp             TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHH
T ss_pred             ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCc
Confidence            6765    46899999  8999999999999865333 2679999996

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=95.05  E-value=0.0048  Score=60.00  Aligned_cols=77  Identities=17%  Similarity=0.368  Sum_probs=54.3

Q ss_pred             ccccccchhhh---hccccchhhhccCCccccCCCcccccccccCCCCcEEecCCCCCcccccccccCC----C--CccC
Q 003750          390 YHNDRIDVAVK---KSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGF----P--VKFD  460 (798)
Q Consensus       390 y~~~~~~~~~~---k~~fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~----~--~~~~  460 (798)
                      +.+-.+.+.|=   |..|++.....+.|-       .+.+|..|+.||+||+||...|+.+|=..||..    .  ....
T Consensus        49 ~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG-------~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~  121 (159)
T 3a1b_A           49 LEHPLFVGGMCQNCKNCFLECAYQYDDDG-------YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAI  121 (159)
T ss_dssp             EECSSBSSEECHHHHHHHHHHTTCBCTTS-------SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHH
T ss_pred             ccCCCccchhhHHHHHHHhhcccccCCCC-------CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHh
Confidence            44444444442   344666655554443       367999999999999999889999999999743    2  2335


Q ss_pred             CCCCccCcccccc
Q 003750          461 EKGNFHCPFCAYT  473 (798)
Q Consensus       461 peGdW~CP~C~y~  473 (798)
                      .+..|.|=.|.=+
T Consensus       122 ~~d~W~Cy~C~P~  134 (159)
T 3a1b_A          122 KEDPWNCYMCGHK  134 (159)
T ss_dssp             TSSSCCCTTTCSS
T ss_pred             ccCCCEEEecCCc
Confidence            6889999999733

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.96  E-value=0.011  Score=62.44  Aligned_cols=57  Identities=19%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhcc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+.||++|...|+-++.+||  =+..|.|..|...       -++.|+..||++.|..+-..|.+
T Consensus       211 k~k~yteeEDRfLL~~l~k~G--~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~  274 (304)
T 1ofc_X          211 KGKNYTEIEDRFLVCMLHKLG--FDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  274 (304)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence            456899999999999999999  1122999999742       35566799999999999888765

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.72  E-value=0.068  Score=44.09  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      .....||++|.+...+|+.+||      ..|..|...    |...||..|+..-|-..+|..
T Consensus         7 ~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~wKkt~   58 (63)
T 2yqk_A            7 GIEKCWTEDEVKRFVKGLRQYG------KNFFRIRKE----LLPNKETGELITFYYYWKKTS   58 (63)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHTC------SCHHHHHHH----SCTTSCHHHHHHHHHHHHCSS
T ss_pred             cCCCCcCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCcHHHHHHHHhcccCCC
Confidence            3567999999999999999999      489999863    346899999998887655543

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=93.80  E-value=0.0087  Score=64.89  Aligned_cols=51  Identities=25%  Similarity=0.531  Sum_probs=42.2

Q ss_pred             ccccccccCCCCcEEecCCCCCcccccccccCCCC------ccCCCCCccCcccccc
Q 003750          423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------KFDEKGNFHCPFCAYT  473 (798)
Q Consensus       423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~------~~~peGdW~CP~C~y~  473 (798)
                      .+.+|..|+.||+||+||...|+++|=..||..-.      .......|.|=.|.=+
T Consensus        92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~  148 (386)
T 2pv0_B           92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS  148 (386)
T ss_dssp             SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred             CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence            36799999999999999999999999999985421      2344689999999744

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=93.65  E-value=0.0083  Score=65.90  Aligned_cols=45  Identities=22%  Similarity=0.571  Sum_probs=35.8

Q ss_pred             ccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccccc
Q 003750          427 CVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYT  473 (798)
Q Consensus       427 C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~y~  473 (798)
                      ++.|+.    +|..++||  .|.-=||..|+|.+....+ .+.|+||.|.-+
T Consensus         7 yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~   56 (447)
T 3kv4_A            7 YCLCRLPYDVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL   56 (447)
T ss_dssp             ETTTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred             EEeCCCcCCCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECCCCccc
Confidence            446765    58899999  9999999999999854332 378999999643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=93.48  E-value=0.11  Score=43.71  Aligned_cols=49  Identities=12%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM  790 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL  790 (798)
                      |.....||++|.+...+|+.+||      ..|..|...    |.++||..|+..-|-..
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYG------KDFNDIRQD----FLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTC------SCHHHHHHT----TCSSSCHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCCHHHHHHHHHhh
Confidence            56677999999999999999999      479999862    34789999999877743

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=93.30  E-value=0.019  Score=51.15  Aligned_cols=35  Identities=29%  Similarity=0.612  Sum_probs=28.3

Q ss_pred             cEEecCCCCCcccccccccCCCCccC----CCCCccCcccc
Q 003750          435 QLLSCSSSTCPLAVHENCLGFPVKFD----EKGNFHCPFCA  471 (798)
Q Consensus       435 qLLcCD~~gCP~ayH~~Clg~~~~~~----peGdW~CP~C~  471 (798)
                      .||.|+  .|...||..|+++.....    ..+.|+||.|.
T Consensus        74 ~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~  112 (117)
T 4bbq_A           74 KLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY  112 (117)
T ss_dssp             SCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred             ceEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence            389999  999999999999874332    23459999996

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=93.18  E-value=0.043  Score=59.40  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      +.+.||++|...|+-+|.+||  =+..|.|..|+..       -++.|+..||++.|..+-..|.+.
T Consensus       227 k~k~yteeEDRfLL~~l~k~G--~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~  291 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYG--LDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC  291 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHT--TCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence            345899999999999999999  1122999999753       255667999999999999888653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.89  E-value=0.14  Score=43.30  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhH---HHHhhhccC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLK---DKWRNMCKG  793 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLK---DKWRNL~Kk  793 (798)
                      +++|.+||+|.-+..+.+|+++|.   +...|+.|++.-.   -.+.|..++|   .|||...++
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~---~~AtPk~Il~~M~---v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGV---ERAVPKKILDLMN---VDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCT---TTCCHHHHHHHHC---CTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCC---CCCCcHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHc
Confidence            578899999999999999999993   2567999998644   2578888888   678876654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=92.78  E-value=0.13  Score=42.20  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCC---CccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDD---RIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~---~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      |.+||+||+.+|++=|.+|.+.|.   +..-|+.|.+. .   .+.+|--..+|+|+.-.+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-~---~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-S---LTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-C---SSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-H---CCCCCHHHHHHHHHHHcc
Confidence            679999999999999999942211   25679988771 1   268999999999987543

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=92.69  E-value=0.049  Score=61.23  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             CcEEecCCCCCcccccccccCCCCccC-CCCCccCcccc
Q 003750          434 GQLLSCSSSTCPLAVHENCLGFPVKFD-EKGNFHCPFCA  471 (798)
Q Consensus       434 GqLLcCD~~gCP~ayH~~Clg~~~~~~-peGdW~CP~C~  471 (798)
                      .-.++||  +|--=||..|+|.+.... .-+.||||.|.
T Consensus        56 ~~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~   92 (528)
T 3pur_A           56 FQWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCV   92 (528)
T ss_dssp             TSEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTH
T ss_pred             CCEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCc
Confidence            4588999  999999999999986443 34899999996

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=91.87  E-value=0.16  Score=56.63  Aligned_cols=51  Identities=14%  Similarity=0.383  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      +...+||.+|.+.++.||++||      ..|..|-+.     ...||..+.|.-|.+..|+.
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG------kdw~~IA~~-----VgTKT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT------TCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----hCCCCHHHHHHHHHHHHHHh
Confidence            5677999999999999999999      489999984     25799999999887766543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.65  E-value=0.13  Score=53.35  Aligned_cols=29  Identities=34%  Similarity=0.580  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF  769 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~  769 (798)
                      ..|+.+|+..|+.||-+||     .|+|..|..+
T Consensus       169 c~W~~~dD~~LLvGIykyG-----yG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYG-----YGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHC-----TTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHc-----CCcHHHHhcC
Confidence            4799999999999999999     9999999975

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=90.30  E-value=0.13  Score=46.84  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             cccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccC
Q 003750          426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHC  467 (798)
Q Consensus       426 ~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~C  467 (798)
                      .|..|++... +.|.  .||.+||..|+.......+.+.|+|
T Consensus        60 ~C~~C~k~~~-~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           60 QCDECSSAAV-SFCE--FCPHSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             BCTTTCSBCC-EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred             CCCcCCCCCC-cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence            6889998877 6788  9999999999999988888888986

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=89.40  E-value=0.32  Score=47.04  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM  790 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL  790 (798)
                      |.....||..|...|+.++.|||.   -.++|..|.....   +.++|.-+|++=++.+
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~---~~~r~~~I~~da~---L~~Ks~~~v~~y~~~f   56 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGG---PLERLDAIARDAE---LVDKSETDLRRLGELV   56 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSS---GGGCHHHHHHHTT---CTTSCHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCC---chhHHHHHHHHhc---cCCCCHHHHHHHHHHH
Confidence            346779999999999999999992   2478999998765   3689999999855544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=88.64  E-value=0.19  Score=43.71  Aligned_cols=48  Identities=23%  Similarity=0.448  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhh
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN  789 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRN  789 (798)
                      -..||.+|..+|..++.+|+  .+-.-+|.+|...     .++||.-+++..|..
T Consensus        20 s~~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~-----VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTN--KDTPDRWKKVAQY-----VKGRTPEEVKKHYEL   67 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGG-----SCSSCHHHHHGGGC-
T ss_pred             CCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHH-----cCCCCHHHHHHHHHH
Confidence            44799999999999999997  2346699999974     358999999988753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=87.58  E-value=0.73  Score=40.84  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=40.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      |.....||++|.+...+|+.+||      .+|..|..     |.+.||..++-.-|-..+|
T Consensus        40 r~~~~~WT~eE~~~F~~~~~~~g------K~F~~Ia~-----~l~~Kt~~~cV~~YY~~Kk   89 (94)
T 4a69_C           40 RQVMNMWSEQEKETFREKFMQHP------KNFGLIAS-----FLERKTVAECVLYYYLTKK   89 (94)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHST------TCHHHHHH-----TCTTCCHHHHHHHHHHHSC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcC------CCHHHHHH-----HcCCCCHHHHHHHHhcccc
Confidence            34567999999999999999999      58999965     4579999998866654433

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=84.12  E-value=0.31  Score=42.66  Aligned_cols=34  Identities=24%  Similarity=0.662  Sum_probs=28.5

Q ss_pred             EEecCCCCCcccccccccCCCC-------ccCCCCCccCcccc
Q 003750          436 LLSCSSSTCPLAVHENCLGFPV-------KFDEKGNFHCPFCA  471 (798)
Q Consensus       436 LLcCD~~gCP~ayH~~Clg~~~-------~~~peGdW~CP~C~  471 (798)
                      .+.||  .|--=||.+|++.+.       .++++-.|.||.|.
T Consensus         2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~   42 (140)
T 2ku7_A            2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT   42 (140)
T ss_dssp             CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred             ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence            47899  999999999999873       34556789999996

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=83.64  E-value=0.24  Score=42.78  Aligned_cols=57  Identities=12%  Similarity=0.242  Sum_probs=47.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCCCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK  798 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k~~  798 (798)
                      -.-..||.||+..++...++-|+.   .-.|+.|...     + +||.-+++++++.|.+...|||
T Consensus        12 e~vvlWTReeDR~IL~~cq~~G~s---~~tfa~iA~~-----L-nks~~QV~~RF~~Lm~Lf~kSk   68 (70)
T 2lr8_A           12 EIIILWTRNDDRVILLECQKRGPS---SKTFAYLAAK-----L-DKNPNQVSERFQQLMKLFEKSK   68 (70)
Confidence            356789999999999999999953   4578777752     3 6999999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	798
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-07
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	2e-07
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	3e-06
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-04
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	1e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-04
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	0.002
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	0.002
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	0.003

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 5e-11
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           K+  W  +E++ L+ GV+K+   +     W KIL       F+ RT++ LKD+WR M K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGN-----WSKILL---HYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           KK  WT +E E +K GVQK+   +     W  I +      F  RTA+ +KD+WR M +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGN-----WAAISKN---YPFVNRTAVMIKDRWRTMKR 51

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR 796
           P++  E E L + V+   +       W+ +           RT +DLKDKW+ +   +  
Sbjct: 2   PFSVAEVEALVEAVEHLGTGR-----WRDVKMRAFD-NADHRTYVDLKDKWKTLVHTASI 55

Query: 797 SK 798
           + 
Sbjct: 56  AP 57

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
               C  C   G+LL C +  CP + H +CL  P+     G + CP C
Sbjct: 8   HMEFCRVCKDGGELLCCDT--CPSSYHIHCLNPPLPEIPNGEWLCPRC 53

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           +C  C K G L+ C+   C    H +C    ++      + C  C
Sbjct: 9   ICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLC 51

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 789
           K  WT +E+E LKK V++          WK I     + +   RT +  + +W+ 
Sbjct: 1   KTRWTREEDEKLKKLVEQN-----GTDDWKVI-----ANYLPNRTDVQCQHRWQK 45

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 8/62 (12%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790
           +++    WT +E+ +  + ++K+         ++ I     S     ++ + +K+ + N 
Sbjct: 1   IQKCNARWTTEEQLLAVQAIRKY------GRDFQAI-----SDVIGNKSVVQVKNFFVNY 49

Query: 791 CK 792
            +
Sbjct: 50  RR 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 789
            K PWT +E++ L K VQK+         W  I     +    GR     +++W N
Sbjct: 2   IKGPWTKEEDQRLIKLVQKY-----GPKRWSVI-----AKHLKGRIGKQCRERWHN 47

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 427 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           C K  +D +L+ C    C  A H  CL   +     G + CP C
Sbjct: 6   CRKKGEDDKLILCDE--CNKAFHLFCLRPALYEVPDGEWQCPAC 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 11/61 (18%)

Query: 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791
           R+    W+ +E+E  ++   +          +  I     + F   +T  +    +    
Sbjct: 14  RQVMNMWSEQEKETFREKFMQHPK------NFGLI-----ASFLERKTVAECVLYYYLTK 62

Query: 792 K 792
           K
Sbjct: 63  K 63

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 789
           K  +T +E+E +   V+K  +       + +I     S +    T   ++ ++R 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEI-----SHYVPNHTGNSIRHRFRV 50

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           K  WT +E+ I+ +  ++  +       W +I     +    GRT   +K+ W +  +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGN------RWAEI-----AKLLPGRTDNAIKNHWNSTMR 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792
           PW+AKE +  ++ +  +         W  +          GRT  ++K  +  + +
Sbjct: 3   PWSAKENKAFERALAVYDKDTP--DRWANVAR-----AVEGRTPEEVKKHYEILVE 51

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 421 WTEQNLCVKCNKDG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470
           W     C   + DG ++L+C    C +  H  C+G          F C  C
Sbjct: 15  WKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNADALPSKFLCFRC 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	798
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.3
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.2
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.1
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	99.03
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.76
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.7
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.63
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.57
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.57
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.29
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.21
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.2
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.1
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	97.99
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.97
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.88
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.81
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.78
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.57
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.35
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	96.7
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	96.58
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.09
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	95.35
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	93.69
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.63

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5e-14  Score=111.77  Aligned_cols=53  Identities=42%  Similarity=0.660  Sum_probs=48.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      ++.+||.||++.|+.||++||     .|+|+.|...|+  | .+||.+||+||||||.|..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G-----~~~W~~I~~~~~--~-~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYG-----EGNWAAISKNYP--F-VNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-----CChHHHHHhhcC--C-CCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999     799999999876  4 7899999999999998864

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.3e-14  Score=109.85  Aligned_cols=52  Identities=40%  Similarity=0.696  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ++.+||+||+++|++||++||     .|+|+.|.+.++   +.+||.+|++|||+||.|.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G-----~~~W~~I~~~~~---~~~Rt~~q~r~Rw~nl~K~   52 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK---FNNRTSVMLKDRWRTMKKL   52 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHhhcC---CCCCCHHHHHHHHHHHHCc
Confidence            467999999999999999999     799999998765   4789999999999999873

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.30  E-value=5.9e-13  Score=113.14  Aligned_cols=51  Identities=27%  Similarity=0.496  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++||.||+++|++||++||     .|+|+.|...+...| ++||.+|||||||||.+
T Consensus         1 r~WT~eEd~~L~~~V~~~G-----~~~W~~I~~~~~~~~-~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHC-----cccHHHHHHHHHhhc-cCCCHHHHHHHHHHHhh
Confidence            5899999999999999999     899999998755334 89999999999999986

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.1e-12  Score=103.55  Aligned_cols=52  Identities=33%  Similarity=0.782  Sum_probs=47.3

Q ss_pred             cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750          422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS  475 (798)
Q Consensus       422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka  475 (798)
                      .++++|..|+.+|+||+||  +|+.+||..|++++....|+++||||.|..+..
T Consensus         7 ~~~~~C~~C~~~g~lv~Cd--~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           7 HHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCcCCCcCCCCCCeEEEeC--CCCccCchhhcCCCcCcCCCCcEECCCCcCccc
Confidence            4567999999999999999  999999999999998889999999999986543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-11  Score=100.58  Aligned_cols=48  Identities=23%  Similarity=0.629  Sum_probs=44.4

Q ss_pred             cccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750          424 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       424 ~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      ..+|..|+.+|+||+||  +|+.+||..|++++....|+|+||||.|...
T Consensus         7 c~~C~~C~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           7 ATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCcCEEEECC--CCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            45799999999999999  9999999999999988999999999999754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1e-10  Score=90.93  Aligned_cols=48  Identities=31%  Similarity=0.502  Sum_probs=45.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM  790 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL  790 (798)
                      |+.||.||+..|..||++||      .+|..||..|+  |.++|++|||..||+.|
T Consensus         1 Rknft~eEv~YL~~GVK~~G------~~WNsILWs~P--F~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG------NHWNSILWSFP--FQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC------SCHHHHHHHSC--CCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc------chhhhhhhccC--CCCCchhhHHHHHHHhh
Confidence            56899999999999999999      59999999999  89999999999999977

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.3e-09  Score=83.77  Aligned_cols=43  Identities=33%  Similarity=0.771  Sum_probs=37.8

Q ss_pred             cccc---CCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750          427 CVKC---NKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       427 C~~C---~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      |.+|   +.++.||.||  +|+..||..|++++....|.|+||||.|.
T Consensus         3 C~vC~~~~~~~~~i~Cd--~C~~~~H~~C~~p~~~~~p~~~W~C~~C~   48 (51)
T d1f62a_           3 CKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CcCcCCCCCCCCEEEcC--CCCCCCCCCCCCCCCCcCCCCCEECcCCc
Confidence            5555   4456799999  99999999999999989999999999996

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=6.6e-09  Score=80.43  Aligned_cols=47  Identities=32%  Similarity=0.640  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      |.+||.+|++.|+++|++||     .++|+.|...     +++||..+++++|+|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNG-----TDDWKVIANY-----LPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHT-----STTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHH-----HCCCCHHHHHHHHHhhC
Confidence            45899999999999999999     7899999983     36899999999999954

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.6e-08  Score=79.15  Aligned_cols=48  Identities=33%  Similarity=0.622  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750          734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  791 (798)
Q Consensus       734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~  791 (798)
                      .|.+||.+|++.|+++|++||     .++|+.|...     +++||..+++++|++..
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHH-----HCCCCHHHHHHHHHhhC
Confidence            467899999999999999999     7899999873     36999999999999854

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2.7e-08  Score=76.59  Aligned_cols=47  Identities=26%  Similarity=0.675  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+||.||++.|++.|++||      .+|+.|...     +++||..++|.+|.++.|
T Consensus         1 K~~WT~eED~~L~~~v~~~G------~~W~~Ia~~-----~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS------SCHHHHHTT-----CTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh------hHHHHHHhH-----cCCCCHHHHHHHHHHHcC
Confidence            46999999999999999999      389999863     379999999999999875

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=7.8e-09  Score=86.95  Aligned_cols=46  Identities=28%  Similarity=0.590  Sum_probs=39.2

Q ss_pred             cccccccCCC-----CcEEecCCCCCcccccccccCCCCc----cCCCCCccCcccc
Q 003750          424 QNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVK----FDEKGNFHCPFCA  471 (798)
Q Consensus       424 ~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~----~~peGdW~CP~C~  471 (798)
                      ...|.+|+..     +.||.||  +|..+||..|++++..    .+|+++||||.|.
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd--~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~   70 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcC--CCCCccccccCCCcccccccccCCCeEECcccC
Confidence            4569999863     5799999  9999999999998753    5789999999995

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=2.9e-07  Score=76.05  Aligned_cols=50  Identities=30%  Similarity=0.848  Sum_probs=37.8

Q ss_pred             CcccccccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCcccccc
Q 003750          421 WTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYT  473 (798)
Q Consensus       421 ~~~~d~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~y~  473 (798)
                      -.+..+| +|..  +|.+|.|+.-.|+. -||..||+..  ..|+|+||||.|.-.
T Consensus        13 ~~e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cvgl~--~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          13 PNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKWYCPKCRGD   65 (71)
T ss_dssp             SSSCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTTTCS--SCCSSCCCCTTTSSC
T ss_pred             CCCCCEE-EeCCCCCCCEEEEECCCCCCcCccCccCCCC--cCCCCcEECcCCccc
Confidence            3444677 6885  67777776558986 5999999864  578999999999643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.9e-07  Score=72.34  Aligned_cols=53  Identities=19%  Similarity=0.459  Sum_probs=43.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM  790 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL  790 (798)
                      .+..+.+||.+|.+.|+++|++||.  ....+|.+|...     .++||..+...+|+.|
T Consensus         8 ~~~~~~~WT~eEd~~L~~~v~~~~~--~~~~~W~~IA~~-----l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           8 ARSAEEPWTQNQQKLLELALQQYPR--GSSDCWDKIARC-----VPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGG-----CSSSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHcCC--ccchHHHHHHHH-----cCCCCHHHHHHHHHHC
Confidence            3556779999999999999999992  112369999973     4699999999999876

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.7e-07  Score=73.74  Aligned_cols=47  Identities=34%  Similarity=0.671  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .+||.||++.|+++|++||      .+|..|...     +++||..+++.+|.++.+.
T Consensus         3 ~~WT~eEd~~l~~~~~~~G------~~W~~Ia~~-----~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG------RRWTKISKL-----IGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC------SCHHHHHHH-----HSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhc------chHHHHHHH-----cCCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999      499999873     3689999999999876543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4e-07  Score=69.69  Aligned_cols=44  Identities=20%  Similarity=0.401  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750          737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM  790 (798)
Q Consensus       737 ~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL  790 (798)
                      .||.+|++.|+++|++||     .++|..|...     ..+||..+.+.+|.+.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-----~~nW~~Ia~~-----~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-----FGNWQDVANQ-----MCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-----TTCHHHHHHH-----HTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-----CccHHHHHHH-----cCCCCHHHHHHHHHHh
Confidence            499999999999999999     7899999984     3589999999999874

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.10  E-value=4.5e-07  Score=70.37  Aligned_cols=43  Identities=28%  Similarity=0.972  Sum_probs=34.4

Q ss_pred             cccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCcccc
Q 003750          426 LCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCA  471 (798)
Q Consensus       426 ~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~  471 (798)
                      +| .|+.  +|++|.|+.-.|+. -||..|||.+.  .|.|+||||.|.
T Consensus         4 yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvgl~~--~p~~~w~C~~C~   49 (51)
T d2pnxa1           4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCS   49 (51)
T ss_dssp             ET-TTTEECCSEEEECSCTTCSSCEEEGGGGTCSS--CCSSCCCCHHHH
T ss_pred             EE-EcCCCCCCCEEEEecCCCCCCCEeCCccCCCc--CCCCcEECcCCC
Confidence            55 3654  67899999667886 59999999754  678999999995

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.05  E-value=1.3e-06  Score=69.91  Aligned_cols=50  Identities=22%  Similarity=0.541  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      ++||.||.+.|+++|++||.  ....+|.+|...     .++||..+.+.+|..|.+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~--~~~~~W~~Ia~~-----l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDK--DTPDRWANVARA-----VEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHH-----STTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCC--CCchHHHHHHHH-----cCCCCHHHHHHHHHHHHH
Confidence            58999999999999999992  122369999984     468999999999988753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.4e-06  Score=68.38  Aligned_cols=52  Identities=13%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      +|...+||++|.+.|.++|.+||      .+|..|...     +++||..+++++|.++.|+.
T Consensus         2 ~k~~~~WT~eE~~~f~~~~~~~G------~~w~~Ia~~-----~~~kt~~q~~~~y~~~~k~~   53 (65)
T d2iw5b1           2 QKCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF   53 (65)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS------SCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC------chHHHHHHH-----cCCCCHHHHHHHHHHHHhhc
Confidence            45667899999999999999999      479999984     36899999999999987753

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.5e-06  Score=72.83  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      |.+||.||++.|++.|++||+......+|+.|..     +.++||..+.+.+|+|...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~-----~lpgRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-----YVPNHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-----TSTTSCHHHHHHHHHHTTG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHH-----HcCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999942222345999986     3479999999999998654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.3e-06  Score=68.23  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      .|+...+||.+|.+.|+.||.+||      .+|..|...     +++||..+++..|.+..|.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G------~~w~~Ia~~-----~~~rt~~q~~~~yy~~kk~   64 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP------KNFGLIASF-----LERKTVAECVLYYYLTKKN   64 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT------SCSSSHHHH-----TTTSCHHHHHHHHHHHTTT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC------CcHHHHHHH-----cCCCCHHHHHHHHHHHHCc
Confidence            456677999999999999999999      489999973     3689999999999876654

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=5.6e-06  Score=67.08  Aligned_cols=38  Identities=29%  Similarity=0.640  Sum_probs=33.7

Q ss_pred             CC-cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750          433 DG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY  472 (798)
Q Consensus       433 ~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y  472 (798)
                      +| .+|.|+  .|..-||..|++++....+.++|+||.|.-
T Consensus        27 ~~~~mv~Cd--~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~   65 (72)
T d1weea_          27 DGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIE   65 (72)
T ss_dssp             CSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred             CCCeEEEeC--CCCCcCchhhcCCccccCCCCcEECcCCcC
Confidence            44 489999  999999999999987777889999999963

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=3.8e-06  Score=66.71  Aligned_cols=48  Identities=21%  Similarity=0.614  Sum_probs=38.4

Q ss_pred             cccccccCC---CC-cEEecCCCCCcccccccccCCCCccCC-CCCccCcccccc
Q 003750          424 QNLCVKCNK---DG-QLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYT  473 (798)
Q Consensus       424 ~d~C~~C~~---~G-qLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~y~  473 (798)
                      ...|.+|+.   ++ .+|.||  +|...||..|++++....+ ...||||.|.-+
T Consensus         6 ~~~C~~C~~~~~~~~~~I~Cd--~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCcCcCcCCCCCCCCCEEEcC--CCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            457888986   33 478899  9999999999999765543 479999999754

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=1.3e-05  Score=66.47  Aligned_cols=45  Identities=22%  Similarity=0.629  Sum_probs=35.6

Q ss_pred             ccccccCC----CCcEEecCCCCCcccccccccCCCCcc-CCCCCccCcccc
Q 003750          425 NLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCA  471 (798)
Q Consensus       425 d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~-~peGdW~CP~C~  471 (798)
                      .+|.+|+.    ++..|.||  .|..-||..|+|..... .+.+.||||.|.
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd--~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~   61 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCE   61 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTT
T ss_pred             CeEeECCCccCCCCcEEECC--CCCCcEeccccCcchhcCCCCCEEECccCc
Confidence            34448986    44589999  99999999999998543 445789999996

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=1.1e-05  Score=65.44  Aligned_cols=44  Identities=23%  Similarity=0.731  Sum_probs=34.4

Q ss_pred             cccccC---CCCcEEecCCCCCcccccccccCCCCc-----cCCCCCccCccccc
Q 003750          426 LCVKCN---KDGQLLSCSSSTCPLAVHENCLGFPVK-----FDEKGNFHCPFCAY  472 (798)
Q Consensus       426 ~C~~C~---~~GqLLcCD~~gCP~ayH~~Clg~~~~-----~~peGdW~CP~C~y  472 (798)
                      +| .|+   .++.+|.|+  .|...||..|+|.+..     ..+..+||||.|..
T Consensus        18 ~C-iC~~~~~~~~mi~Cd--~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~   69 (76)
T d1wema_          18 YC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI   69 (76)
T ss_dssp             CS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred             EE-ECCCccCCCeEEEEC--CCCCcCCccccCCCcccccccCCCCCcEECCCCcC
Confidence            45 455   477899999  9999999999998632     23467899999964

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00051  Score=59.88  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750          733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  794 (798)
Q Consensus       733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks  794 (798)
                      -+...||.||+..|+..++++|+.   .--|..|-.     |+.+||.-+++.+|+.|.+..
T Consensus        31 ~~~~~WTrEEDriIL~~~q~~G~~---~~tw~~Ia~-----~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          31 EKVVLWTREADRVILTMCQEQGAQ---PHTFSVISQ-----QLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTSC---TTTHHHHHH-----HHSSCCHHHHHHHHHHHHHHH
T ss_pred             CccCCcCHHHHHHHHHHHHHcCCc---HHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999942   344999997     457999999999999987753

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.58  E-value=0.00061  Score=55.84  Aligned_cols=50  Identities=24%  Similarity=0.576  Sum_probs=35.9

Q ss_pred             cccccccCC---CCcEEecCCCCCcccccccccCCCCccC-----CCCCccCccccccc
Q 003750          424 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFD-----EKGNFHCPFCAYTL  474 (798)
Q Consensus       424 ~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~-----peGdW~CP~C~y~k  474 (798)
                      .-+| .|+.   +|.++.|+-..|..-||..|+|.+....     ..-.|+||.|..++
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            3467 6877   5788888744799999999999863211     12369999997543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.09  E-value=0.003  Score=51.26  Aligned_cols=54  Identities=22%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCccch--hhhhhhcCCCcCCCCCcchhH---HHHhhhccC
Q 003750          732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPW--KKILEFGSSVFFSGRTAIDLK---DKWRNMCKG  793 (798)
Q Consensus       732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~W--kkIL~~~~~vF~~~RT~VDLK---DKWRNL~Kk  793 (798)
                      +++|..||+||-+.+++||++||     .+.|  +.|++.-.   -.++|..+++   .|||.-.++
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG-----~~~atpk~I~~~m~---v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLG-----VERAVPKKILDLMN---VDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHC-----TTTCCHHHHHHHHC---CTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-----ccccchHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999     4555  68887543   3789999888   778776554

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0084  Score=46.90  Aligned_cols=46  Identities=13%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750          737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       737 ~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      .||+||...+.+|+.+||      ..|..|...    |.++||.-++.+-|-+..|
T Consensus         3 ~WT~eE~~~F~~~~~~yG------Kdf~~I~~~----~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           3 EWSASEACLFEEALEKYG------KDFNDIRQD----FLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC------SCHHHHHHT----TCSSSCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHc------ccHHHHHHH----HcCCCCHHHHHHHHHHHhC
Confidence            699999999999999999      599999863    2368999999998876554

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.023  Score=45.29  Aligned_cols=50  Identities=24%  Similarity=0.443  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG  793 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk  793 (798)
                      ..||.+|...|..++.+|.  ..-..+|.+|.+.    +  +||.-+...+++.|.-.
T Consensus         2 ~eWT~ee~~~le~Al~~~P--~gt~~RW~~IA~~----v--gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHE----L--GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHH----H--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCC--CCCcHHHHHHHHH----H--CCCHHHHHHHHHHHHHh
Confidence            4799999999999999996  3346899999974    3  69999999999887643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.63  E-value=0.042  Score=49.64  Aligned_cols=52  Identities=19%  Similarity=0.336  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCccc---hhhhhh-------hcCCCcCCCCCcchhHHHHhhhcc
Q 003750          736 VPWTAKEEEILKKGVQKFASVDDRIIP---WKKILE-------FGSSVFFSGRTAIDLKDKWRNMCK  792 (798)
Q Consensus       736 r~WT~EEeeaL~eGVqKyGp~~~~~G~---WkkIL~-------~~~~vF~~~RT~VDLKDKWRNL~K  792 (798)
                      +.+|+||...|+-.+.+||     .|+   |-.|..       +-++.|+..||+.+|..+--.|.+
T Consensus        50 k~yteeEDRfLl~~~~~~G-----~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          50 KNYTEIEDRFLVCMLHKLG-----FDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            3599999999999999999     888   888763       236667799999999998877764