Citrus Sinensis ID: 003768
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 796 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI4 | 572 | Proteinaceous RNase P 1, | yes | no | 0.530 | 0.737 | 0.540 | 1e-123 | |
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | no | no | 0.520 | 0.718 | 0.468 | 1e-113 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.527 | 0.795 | 0.445 | 1e-103 | |
| O15091 | 583 | Mitochondrial ribonucleas | yes | no | 0.399 | 0.545 | 0.222 | 4e-09 | |
| Q8JZY4 | 584 | Mitochondrial ribonucleas | yes | no | 0.398 | 0.542 | 0.216 | 2e-06 | |
| B5DF07 | 587 | Mitochondrial ribonucleas | yes | no | 0.449 | 0.609 | 0.210 | 3e-06 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.192 | 0.242 | 0.259 | 9e-05 | |
| P0C896 | 576 | Pentatricopeptide repeat- | no | no | 0.116 | 0.161 | 0.268 | 0.0002 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.130 | 0.201 | 0.25 | 0.0002 | |
| Q9ZUA2 | 559 | Pentatricopeptide repeat- | no | no | 0.152 | 0.216 | 0.256 | 0.0003 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 301/424 (70%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 567
Query: 779 RANS 782
R+ +
Sbjct: 568 RSKT 571
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Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 276/431 (64%), Gaps = 17/431 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LL N FF +WKERHQVRF+F + MPPP SVVIQESEKG+WH+PI S QD ++
Sbjct: 507 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 565
Query: 772 RRWLCVTRANS 782
R W+C+TR +S
Sbjct: 566 RSWMCITRQSS 576
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/444 (44%), Positives = 282/444 (63%), Gaps = 24/444 (5%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LLG+ FF +WKERHQVR++F + MP P SVVIQESEKG+WH P++ + + ++
Sbjct: 448 ELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN-EESS 506
Query: 772 RRWLCVTRANSHMNRQNSYSSPKA 795
R W+C++ RQ+ SPK+
Sbjct: 507 RTWMCIS-------RQSILDSPKS 523
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 144/382 (37%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 335
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I ++
Sbjct: 336 ----KGQF----TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERCSCEVPTKWLCL 579
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Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Homo sapiens (taxid: 9606) |
| >sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 143/383 (37%), Gaps = 66/383 (17%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++YG + + DV+ A ++ + ++ H + P L+A + D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S + ++W
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
KG++ TT+ C CG + I L P E E E + I K+
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
++F+ +++ PF+ V+D NV + + + VV+ + Q+ +
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLG 441
Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRD 708
R+ Q + + K A +A S DD + LYA + C +T D +RD
Sbjct: 442 RKHMLRPSSQWRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRD 500
Query: 709 HTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
H L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 501 HKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY-- 557
Query: 764 KQDYDDEER-------RWLCVTR 779
D D +R +WLC+ R
Sbjct: 558 --DEDLVQRSSCEVPTKWLCLQR 578
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Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Mus musculus (taxid: 10090) |
| >sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus GN=Mrpp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/437 (21%), Positives = 166/437 (37%), Gaps = 79/437 (18%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + T + R + A +++ +K + + P ++YG +
Sbjct: 195 IDVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQG 253
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-------GDRVYYLLHKLR 484
+ DV+ A S+ + ++ H + P L L+ + GK +++ +L LR
Sbjct: 254 ALLHQDVNVAWSLYQELVGHNLIP----LLETLKAFFDHGKDMNDDQYSNQLLDILLYLR 309
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
+ S A I WF S + ++W KG++
Sbjct: 310 NNQLYPGESFAHSIKTWFES-----IPGRQW-----------------------KGQF-- 339
Query: 545 SHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKW 598
TT+ C CG + I L P E E E++ I K+ ++F+++
Sbjct: 340 --TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERF 397
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
+ PF+ V+D NV + F R + + GI + + +++ R+
Sbjct: 398 VKSCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQN-LQLLVLGRKHMLRPS 452
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQL--- 713
Q + + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 453 SQWRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDA 511
Query: 714 LGNDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDE- 770
F +W++ HQ+ + F + F V+Q + WHIP YD++
Sbjct: 512 RAQRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQ-TTGDTWHIP------YDEDL 564
Query: 771 --------ERRWLCVTR 779
+WLC+ R
Sbjct: 565 VPRSSCEVPTKWLCLQR 581
|
Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Rattus norvegicus (taxid: 10116) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 796 | ||||||
| 359484351 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.870 | 0.849 | 0.632 | 0.0 | |
| 297738805 | 751 | unnamed protein product [Vitis vinifera] | 0.820 | 0.869 | 0.643 | 0.0 | |
| 255546443 | 745 | multidrug resistance pump, putative [Ric | 0.802 | 0.857 | 0.635 | 0.0 | |
| 356527775 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.658 | 0.723 | 0.633 | 0.0 | |
| 449465334 | 633 | PREDICTED: proteinaceous RNase P 1, chlo | 0.781 | 0.982 | 0.611 | 0.0 | |
| 357520987 | 668 | Pentatricopeptide repeat-containing prot | 0.687 | 0.818 | 0.603 | 0.0 | |
| 357520951 | 702 | Pentatricopeptide repeat-containing prot | 0.687 | 0.779 | 0.603 | 0.0 | |
| 224119796 | 461 | predicted protein [Populus trichocarpa] | 0.502 | 0.867 | 0.779 | 0.0 | |
| 413936385 | 684 | hypothetical protein ZEAMMB73_755879 [Ze | 0.711 | 0.827 | 0.517 | 0.0 | |
| 115445507 | 719 | Os02g0273800 [Oryza sativa Japonica Grou | 0.679 | 0.752 | 0.558 | 0.0 |
| >gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/743 (63%), Positives = 552/743 (74%), Gaps = 50/743 (6%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDE 705
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDE
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDE 648
Query: 706 MRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
MRDH FQLLGNDFFP+WKERHQV FSFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+
Sbjct: 649 MRDHIFQLLGNDFFPKWKERHQVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEH 708
Query: 766 DYDDEERRWLCVTRANSHMNRQN 788
D + ER WLCVTRANS M +Q+
Sbjct: 709 D-SEGERTWLCVTRANSQMAKQS 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/718 (64%), Positives = 536/718 (74%), Gaps = 65/718 (9%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF 730
KNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDEMRDH FQLLGNDFFP+WKERHQV F
Sbjct: 549 KNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPKWKERHQVHF 608
Query: 731 SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQN 788
SFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+ D + ER WLCVTRANS M +Q+
Sbjct: 609 SFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHD-SEGERTWLCVTRANSQMAKQS 665
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/669 (63%), Positives = 512/669 (76%), Gaps = 30/669 (4%)
Query: 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201
K K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C
Sbjct: 6 KGATKERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKC 64
Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
KRGDVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ V
Sbjct: 65 CKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAV 124
Query: 262 STMNST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDD 302
S S+ EL D D+D N +D G +P DK+E SS RF+D
Sbjct: 125 SDEVSSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFND 184
Query: 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
DST NE++NL Q N Q L+ S + D + D + I +SED
Sbjct: 185 SDSTSNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSED 235
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KKYA +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRL
Sbjct: 236 IKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRL 295
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
RSYGPAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHK
Sbjct: 296 RSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHK 355
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRTSVRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW
Sbjct: 356 LRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKW 415
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
VS ++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYY
Sbjct: 416 TVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYY 475
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
GPFEAVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PV
Sbjct: 476 GPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPV 535
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRW 722
N++L+EKWK+ADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFP+W
Sbjct: 536 NKSLVEKWKHADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPKW 595
Query: 723 KERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
KERHQV F FSDAGP F+MPP SVVIQESE G+WHIPIAS DY + ER WLC+TRA
Sbjct: 596 KERHQVHFGFSDAGPVFHMPPSFSVVIQESENGHWHIPIASDTDY-EPERAWLCITRAKL 654
Query: 783 HMNRQNSYS 791
+ R++S +
Sbjct: 655 PLPRKDSIT 663
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/592 (63%), Positives = 448/592 (75%), Gaps = 68/592 (11%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729
W NADALYATPTGSNDDWYWLYAAIKF+CLLVTNDEMRDH FQLLGNDFFP+WKERHQVR
Sbjct: 521 WNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVR 580
Query: 730 FSFSDAG-PEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRA 780
FSFSD G P F+MPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA
Sbjct: 581 FSFSDTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELN-DESERRWLCITRA 631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/661 (61%), Positives = 485/661 (73%), Gaps = 39/661 (5%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
KWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFPRWKERHQV
Sbjct: 505 KWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPRWKERHQV 564
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN--SHMNR 786
FSFS GP F+MPPPCSVVIQESE G+WH+P+AS+ Y +E+R+WLC+TR N S M R
Sbjct: 565 HFSFSATGPVFHMPPPCSVVIQESENGHWHVPLASEHSY-EEDRKWLCITRGNLQSQMAR 623
Query: 787 Q 787
Q
Sbjct: 624 Q 624
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/608 (60%), Positives = 440/608 (72%), Gaps = 61/608 (10%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 495 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 554
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA M
Sbjct: 555 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 613
Query: 787 QNSYSSPK 794
+S ++ K
Sbjct: 614 GDSSTTSK 621
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/608 (60%), Positives = 440/608 (72%), Gaps = 61/608 (10%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 529 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 588
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA M
Sbjct: 589 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 647
Query: 787 QNSYSSPK 794
+S ++ K
Sbjct: 648 GDSSTTSK 655
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/403 (77%), Positives = 360/403 (89%), Gaps = 3/403 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 718
D PVN+A IEKWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTF LLGNDF
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFHLLGNDF 418
Query: 719 FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
FPRWKERHQV F F+DAGP+F MPPPCSVVIQESEKG+WHIPI
Sbjct: 419 FPRWKERHQVHFRFTDAGPDFDMPPPCSVVIQESEKGHWHIPI 461
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/622 (51%), Positives = 419/622 (67%), Gaps = 56/622 (9%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDDWYWLYAAI+ KCL++
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDWYWLYAAIRCKCLII 601
Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
TNDEMRDHTFQ+L +FFP+WKERHQV F+ D F MPPP SVVIQES+KG+WHIP+
Sbjct: 602 TNDEMRDHTFQILERNFFPKWKERHQVHFTLEDRCVTFQMPPPYSVVIQESDKGHWHIPV 661
Query: 762 ASKQDYDDEERRWLCVTRANSH 783
S++ +++R WLCVTR NS
Sbjct: 662 -SEEGLLEKDRTWLCVTRQNSQ 682
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115445507|ref|NP_001046533.1| Os02g0273800 [Oryza sativa Japonica Group] gi|47848046|dbj|BAD21831.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113536064|dbj|BAF08447.1| Os02g0273800 [Oryza sativa Japonica Group] gi|215697065|dbj|BAG91059.1| unnamed protein product [Oryza sativa Japonica Group] gi|326324779|dbj|BAJ84577.1| P0413A11.14-1 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/593 (55%), Positives = 418/593 (70%), Gaps = 52/593 (8%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG
Sbjct: 177 EVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSG 236
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+ + + GQL S+ + LE DD+
Sbjct: 237 NAGSGIASI-------------------GQLHSSSTQSVGNLEG------DDVQ------ 265
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
S GH S+ +G DD + K I +S++ ++YA R
Sbjct: 266 ------SEGH----SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTR 306
Query: 371 GFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
GFEI+EKM +E VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK GI P+LRSYGPA
Sbjct: 307 GFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPA 366
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ FCN+G+V+KA VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR
Sbjct: 367 LTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVR 426
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ S +TA ++ WF S A+++GK+KW+ I +EN GGGWHGLGWLG+GKW +SH+
Sbjct: 427 QASSTTAKLLEDWFQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHSH 486
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ + C CGEKL IIDLDP ETE FA VA +AIKRER S+F FQKWL+ +GPF+AV
Sbjct: 487 IDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAV 546
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
VD ANVGL+S ++ +++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+E
Sbjct: 547 VDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVE 606
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
KWK ++A+YATPTGSNDDWYWLYAAI+ KCL+VTNDEMRDHTFQLL DFFP+WKERHQV
Sbjct: 607 KWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQV 666
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
RF+F D+ MPPPCSVVIQESE G WHIP+ S++ +++R WLCVTR N
Sbjct: 667 RFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTRRN 719
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 796 | ||||||
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.530 | 0.737 | 0.509 | 3.2e-134 | |
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.520 | 0.718 | 0.440 | 7.4e-103 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.516 | 0.778 | 0.425 | 3.2e-102 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.099 | 0.506 | 0.413 | 5.2e-12 | |
| MGI|MGI:1913382 | 584 | 1110008L16Rik "RIKEN cDNA 1110 | 0.283 | 0.386 | 0.236 | 1.6e-08 | |
| RGD|1305089 | 587 | RGD1305089 "similar to 1110008 | 0.283 | 0.385 | 0.240 | 5.1e-08 | |
| UNIPROTKB|O15091 | 583 | KIAA0391 "Mitochondrial ribonu | 0.276 | 0.377 | 0.247 | 1.9e-07 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.393 | 0.496 | 0.229 | 5.8e-05 | |
| TAIR|locus:2065428 | 559 | AT2G01740 "AT2G01740" [Arabido | 0.150 | 0.214 | 0.258 | 0.00022 | |
| TAIR|locus:2197424 | 664 | EMB3103 "EMBRYO DEFECTIVE 3103 | 0.153 | 0.183 | 0.237 | 0.00075 |
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1143 (407.4 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 216/424 (50%), Positives = 288/424 (67%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAK 567
Query: 779 RANS 782
R+ +
Sbjct: 568 RSKT 571
|
|
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 190/431 (44%), Positives = 264/431 (61%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LL N FF +WKERHQVRF+F + MPPP SVVIQESEKG+WH+PI S QD ++
Sbjct: 507 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 565
Query: 772 RRWLCVTRANS 782
R W+C+TR +S
Sbjct: 566 RSWMCITRQSS 576
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 182/428 (42%), Positives = 264/428 (61%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LLG+ FF +WKERHQVR++F + MP P SVVIQESEKG+WH P++ + + ++
Sbjct: 448 ELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN-EESS 506
Query: 772 RRWLCVTR 779
R W+C++R
Sbjct: 507 RTWMCISR 514
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
|
|
| MGI|MGI:1913382 1110008L16Rik "RIKEN cDNA 1110008L16 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 59/249 (23%), Positives = 100/249 (40%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E + I K+ ++F+ +++
Sbjct: 337 TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVN 396
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + G+ + + L+VL + + Q
Sbjct: 397 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGVVSQLAQQNLQLLVLGRKHML-RPSSQ 451
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
+ + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 452 WRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRDHKACLPDART 510
Query: 716 NDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS---KQDYDDE 770
F +W++ HQ+ F + F V+Q + +WHIP ++ +
Sbjct: 511 QRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEV 569
Query: 771 ERRWLCVTR 779
+WLC+ R
Sbjct: 570 PTKWLCLQR 578
|
|
| RGD|1305089 RGD1305089 "similar to 1110008L16Rik protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 60/249 (24%), Positives = 100/249 (40%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E++ I K+ ++F++++
Sbjct: 340 TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + GI + + L+VL + + Q
Sbjct: 400 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQNLQLLVLGRKHML-RPSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LG 715
+ + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 455 WRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDARA 513
Query: 716 NDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK---QDYDDE 770
F +W++ HQ+ + F + F V+Q + WHIP + +
Sbjct: 514 QRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVPRSSCEV 572
Query: 771 ERRWLCVTR 779
+WLC+ R
Sbjct: 573 PTKWLCLQR 581
|
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| UNIPROTKB|O15091 KIAA0391 "Mitochondrial ribonuclease P protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 62/251 (24%), Positives = 100/251 (39%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TTV C CG+ + I L P E E + I ++ ++F+ ++
Sbjct: 340 TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + ++ + + + L+VL + + + Q
Sbjct: 400 SRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHML-RRSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
+ E K A +A S DD + LYA + C +T D MRDH L
Sbjct: 455 WSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKT 513
Query: 716 NDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER- 772
F +W++ HQ+ F + F V+Q + +WHIP D D ER
Sbjct: 514 QRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGD-SWHIPY----DEDLVERC 568
Query: 773 ------RWLCV 777
+WLC+
Sbjct: 569 SCEVPTKWLCL 579
|
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
|
|
| TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
|
|
| TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016721001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (756 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 796 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ + + I
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD D A S+ + M + GV P+E AL+ V+ AG D+ + +L R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 485 TS 486
Sbjct: 677 KQ 678
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
IY+ M V +E +A+ +A GD D AF++++ + GI SY +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
N + KA + E + + P + AL+ E + + +L +++
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
L +Y L GD D A +V E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 796 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.66 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.51 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.44 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.95 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.83 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.59 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.57 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.48 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.4 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.37 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.32 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.22 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.12 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.07 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.84 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.66 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.62 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.32 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.07 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 96.81 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.7 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.62 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.6 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.43 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.41 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.19 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 95.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.82 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 95.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 95.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.48 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.32 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 95.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.97 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 94.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 94.82 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 94.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 94.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 94.78 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.76 | |
| KOG3777 | 443 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.28 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 94.28 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.23 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 94.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 94.13 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 94.11 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 94.07 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 94.01 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 93.87 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 93.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 93.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 93.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 93.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.19 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 92.96 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 92.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 92.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 92.41 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 92.4 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 92.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 92.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 91.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 91.94 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 91.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 91.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 91.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 91.42 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 91.29 | |
| PLN02789 | 320 | farnesyltranstransferase | 91.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 91.15 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.95 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 90.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 90.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 90.64 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 90.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 90.02 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 89.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 89.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 89.19 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 88.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 88.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 88.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 88.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 88.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 88.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 87.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 87.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 87.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 86.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 86.52 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 86.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 85.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 85.32 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 85.04 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 84.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 83.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 83.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 83.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 82.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 81.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 81.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 80.41 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=481.35 Aligned_cols=539 Identities=11% Similarity=0.090 Sum_probs=395.8
Q ss_pred HHHhhccccccccccccc-cccc-cceeeeeecccccccccCCCchhhhccccccccccccccccchhhhhhhhhccCCc
Q 003768 53 VFKAHVRNTQAKLSTTET-EHET-STVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMS 130 (796)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (796)
.......+...++.+-|. +..+ ...+..+...........|........+..-.. -....|..-.-.+++.|...
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHH
Confidence 333333445556656555 2222 233333333334444444544444333321111 11223333444555666666
Q ss_pred cCCCCCccccccccccccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003768 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGA 210 (796)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A 210 (796)
.+...+.............++|..+. .+++.++.++|.++|++|.+.| +.||+++||+||.+|++.|++++|
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555555555667778888888 8899999999999999996544 667779999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc-CCCC-CcchhhhcccCc
Q 003768 211 IRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPM 288 (796)
Q Consensus 211 ~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~-~gv~-d~~tyn~LI~~~ 288 (796)
+++|++|.+.|+.||.+|||+||.+|+ +.|++++|.++| .+|... .++. |.++||+||.+
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf-------~eM~~~~~gi~PD~vTynaLI~a- 588 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVL-------AEMKAETHPIDPDHITVGALMKA- 588 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHH-------HHHHHhcCCCCCcHHHHHHHHHH-
Confidence 999999999999999999999999999 889999999999 478652 3665 88999999999
Q ss_pred cccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccch
Q 003768 289 IDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 289 ~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~ 355 (796)
|++.|++++|.++|++|.+.|+.|+.++|+ .|++++|..+|++| .||.++|
T Consensus 589 -----y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty----------- 652 (1060)
T PLN03218 589 -----CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF----------- 652 (1060)
T ss_pred -----HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------
Confidence 999999999999999999999999999998 89999999999999 7999999
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+++|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhchHHHHhccc--
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKK-- 513 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~~~~a~~~-- 513 (796)
|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.+.++|... ..+++..
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999994444444888877776531 1222110
Q ss_pred ---cchh-------hHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccc-----cCC--HHHHHHHH
Q 003768 514 ---KWNE-------SLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAII-----DLD--PIETEKFA 576 (796)
Q Consensus 514 ---~~~~-------~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i-----~l~--~~e~~~l~ 576 (796)
.|+. .-..+|+. +|++|...|+.|+.++|..++ .+.|..++..+..- .+. ...+..+.
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~ 886 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLS 886 (1060)
T ss_pred hhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhH
Confidence 0111 11234554 789999999999999996655 55565555432110 000 01111111
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHhhcCCcceeeecceeecccCCCCChh----hHHHHHHHHHhhCCCC-CceE
Q 003768 577 ESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPA----RVNAVVNGIRQKFPSK-KWPL 645 (796)
Q Consensus 577 ~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~nva~~~~~~~~~~----~l~~vv~~~~~~~~~~-~~~l 645 (796)
..|-++ .....++|..|.+|+..+..+++..+-.... +.-..++.. .|...++-|++++..| +.|=
T Consensus 887 ~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~-~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~ 957 (1060)
T PLN03218 887 TLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKSPIV-IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPN 957 (1060)
T ss_pred HHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccCceE-EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCc
Confidence 222211 1123579999999999998888876544443 333344443 3333444444433233 4443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=471.70 Aligned_cols=349 Identities=15% Similarity=0.150 Sum_probs=283.3
Q ss_pred cccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
....++|..+. ..++.++.++|+++|++|.+.| +.||.++||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 55667777777 7788888888888888885554 556668888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~ 304 (796)
.+|||+||.+|+ +.|++++|.++| ++|... |+. |.++||+||.+ ||+.|++++|.
T Consensus 507 vvTynaLI~gy~----------k~G~~eeAl~lf-------~~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~ 562 (1060)
T PLN03218 507 VHTFGALIDGCA----------RAGQVAKAFGAY-------GIMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHH----------HCcCHHHHHHHH-------HHHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence 888888888888 888888888888 467665 666 78888888888 88888888888
Q ss_pred HHHHHHHH--cCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccchhhHHHHHHhccCHH
Q 003768 305 STFNEKEN--LGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 305 ~lf~eM~~--~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
++|++|.. .|+.||.++|+ .|++++|..+|++| .|+.++| |++|.+|++.|+++
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty-----------nsLI~ay~k~G~~d 631 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY-----------TIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH-----------HHHHHHHHhcCCHH
Confidence 88888876 67888888888 88888888888888 6777888 88888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.++|++|.+.|+.||.+||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHhccccchhhHHHHHhhhcC
Q 003768 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKG 528 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g 528 (796)
+.|+.||..+||+||.+|++.|++++|.++|++|...+..|+..||++ |.++++.+...+|. .
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~-------------~--- 775 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL-------------D--- 775 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH-------------H---
Confidence 888888888888888888888888888888888888843333337777 66666665543333 2
Q ss_pred CCccccccCCCceeEEEEeeccCCCccc
Q 003768 529 GGWHGLGWLGKGKWIVSHTTVGGDALCK 556 (796)
Q Consensus 529 ~~~~~m~~~g~~p~~v~~t~vl~~G~C~ 556 (796)
++..|...|+.|+..+|. .++ +.|.
T Consensus 776 -l~~~M~k~Gi~pd~~tyn-sLI-glc~ 800 (1060)
T PLN03218 776 -LLSQAKEDGIKPNLVMCR-CIT-GLCL 800 (1060)
T ss_pred -HHHHHHHcCCCCCHHHHH-HHH-HHHH
Confidence 566677778888888873 444 5553
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=460.19 Aligned_cols=397 Identities=12% Similarity=0.026 Sum_probs=295.5
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
...+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.+++..+.+++..|.+.|+.||.
T Consensus 151 d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~g------~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 151 DLFSWNVLVG--GYAKAGYFDEALCLYHRMLWAG------VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred CeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 4455666665 6666666666666666664433 4444466666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
.+||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++
T Consensus 223 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~l 275 (857)
T PLN03077 223 DVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLEL 275 (857)
T ss_pred chHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHH
Confidence 66666666666 8999999999995 56543 88999999999 9999999999999
Q ss_pred HHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCcc
Q 003768 307 FNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQS 342 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~~ 342 (796)
|++|.+.|+.||.+||+ .|++++|..+|++| .||++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999988888887 57777788888888 77888
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
+| |+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+.
T Consensus 356 s~-----------n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 356 SW-----------TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred eH-----------HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 88 8888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~ 501 (796)
.+||+||.+|+++|++++|.++|++|.+ +|.++||+||.+|++.|+.++|..+|++|... ..|+..|+.. |.++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHH
Confidence 8888888888888888888888888765 67778888888888888888888888888753 2333337766 4444
Q ss_pred HhchHHHHhccccchhhHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccccC--CHHHHHHHHHHH
Q 003768 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESV 579 (796)
Q Consensus 502 ~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i~l--~~~e~~~l~~~i 579 (796)
++.+....+. + ++..+...|..++...+ +.+++++|+++...-+.-.+ .+.+...|...|
T Consensus 500 ~~~g~l~~~~-------------~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 500 ARIGALMCGK-------------E----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred hhhchHHHhH-------------H----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 4444332221 1 33345556778888888 78899999988754332222 134567788899
Q ss_pred HHHHHhhhchHHHHHHHHHHhhcCCcceeeecc
Q 003768 580 ASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAA 612 (796)
Q Consensus 580 ~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~ 612 (796)
..++.+|...++++.|.+|.+.+..||.+.-..
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 999999999999999999999887777665433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=434.67 Aligned_cols=416 Identities=12% Similarity=0.087 Sum_probs=344.1
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
...+++..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||.
T Consensus 86 ~~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 86 SGVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 3445677776 7888999999999999995433 35688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
.+||.||++|+ ++|++++|.++|+ +|... |+++||+||.+ |++.|++++|.++
T Consensus 159 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~l 211 (697)
T PLN03081 159 YMMNRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHH
Confidence 99999999999 9999999999995 66543 99999999999 9999999999999
Q ss_pred HHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCcc
Q 003768 307 FNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQS 342 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~~ 342 (796)
|++|.+.|+.||..||+ +|++++|..+|++| .+|++
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 99999988888766653 78999999999999 89999
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
+| |+||.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 292 t~-----------n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 292 AW-----------NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HH-----------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~ 501 (796)
.+|++||.+||++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||.. |.++
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999975 8999999999999999999999999999999944444448888 6666
Q ss_pred HhchHHHHhccccchhhHHHHHhhhcCCCcccccc-CCCceeEEEEeeccCCCccccccccccc--c---cCCHHHHHHH
Q 003768 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLAI--I---DLDPIETEKF 575 (796)
Q Consensus 502 ~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~-~g~~p~~v~~t~vl~~G~C~~c~~~L~~--i---~l~~~e~~~l 575 (796)
++.|...++ .. +|..|.. .|+.|+..+| +.+++++|+.|...-+. + .+.+ +...|
T Consensus 437 ~~~g~~~~a-------------~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~ 497 (697)
T PLN03081 437 RYSGLSEQG-------------WE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMW 497 (697)
T ss_pred hcCCcHHHH-------------HH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHH
Confidence 666654433 33 6666754 5889999999 78889999998754321 1 1111 22345
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhcC----CcceeeecceeecccCCCCChhhHHHHHHHHHh
Q 003768 576 AESVASIAIKRERNSSFQKFQKWLDYYG----PFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (796)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~----pyD~VIDG~nva~~~~~~~~~~~l~~vv~~~~~ 636 (796)
...+.....+|....+...+++.++-.+ .|..++++ |.+.| .++....+.+.+++
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence 5566666677777766666666654321 23333332 32222 34555555555555
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=437.52 Aligned_cols=309 Identities=13% Similarity=0.033 Sum_probs=241.6
Q ss_pred cccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
....+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 45566788777 7888888888888888886655 455558888888888888888888888888888888889
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (796)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 999999999988 9999999999994 66543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCc
Q 003768 306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ 341 (796)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~ 341 (796)
+|++|.+.|+.||.+||+ .|++++|..+|++| .+|+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 999999999999999886 68889999999999 8899
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
++| |+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|+++.+.+++..|.+.|+.||
T Consensus 456 vs~-----------~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 456 ISW-----------TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred eeH-----------HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999 9999999999999999999999985 6899999999988888888888888888888877777666
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHH-H
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-I 498 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~-I 498 (796)
..+||+||.+|+++|++++|+++|++| .||..+||+||.+|++.|+.++|.++|++|.+. ++.|+ ||.. |
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll 596 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLL 596 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHH
Confidence 666555555555555555555555554 355555555555555555555555555555555 33333 4544 4
Q ss_pred HHHHhchHHH
Q 003768 499 AKWFNSKEAA 508 (796)
Q Consensus 499 ~~~~~~~~~~ 508 (796)
.++++.|...
T Consensus 597 ~a~~~~g~v~ 606 (857)
T PLN03077 597 CACSRSGMVT 606 (857)
T ss_pred HHHhhcChHH
Confidence 4444444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=426.86 Aligned_cols=383 Identities=11% Similarity=-0.005 Sum_probs=256.2
Q ss_pred cccccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003768 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (796)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~ 223 (796)
......++|..+. ...+.++.++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 154 ~~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 154 FEPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred CCcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 3445667888887 888999999999999999 3478899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHH
Q 003768 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD 302 (796)
Q Consensus 224 pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (796)
||..||+++|.+|+ +.|..+.+.+++. .+.+. |+. |..+||+||++ |++.|++++
T Consensus 222 p~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~ 277 (697)
T PLN03081 222 AEPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIED 277 (697)
T ss_pred CChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHH
Confidence 99999999999998 5555555655552 33333 444 55566666666 666666666
Q ss_pred HHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccchhhHHHHHHhccCHH
Q 003768 303 LDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 303 A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
|.++|++|.. +|+++|+ .|+.++|..+|++| .||.+|| +++|.+|++.|.++
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~-----------~~ll~a~~~~g~~~ 342 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF-----------SIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH-----------HHHHHHHHhccchH
Confidence 6666666642 4556665 56666666666665 5566666 77777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.+++.+|.+.|+.||..+||+||++|++.|++++|.++|++|. .||+.|||+||.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777664 3566777777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCChhHHHH-HHHHHhchHHHHhccccchhhHHHHHhhhc
Q 003768 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENK 527 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~-~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~ 527 (796)
+.|+.||..||++||.+|++.|.+++|.++|+.|.+ .+..|...+|+. |..+++.|...+|. .
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~-------------~-- 483 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY-------------A-- 483 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------H--
Confidence 777777777777777777777777777777777754 322222235665 66666655544333 1
Q ss_pred CCCccccccCCCceeEEEEeeccCCCcccccccccc------cccCCHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHhh
Q 003768 528 GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDY 601 (796)
Q Consensus 528 g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~------~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~ 601 (796)
++..| +..|+.++| +.+..+.|..+...++ .+.+.+.....+...+..++..|...++.+.|++|.++
T Consensus 484 --~~~~~---~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 484 --MIRRA---PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred --HHHHC---CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 12222 345555555 4555555555543322 11223322223334444566667778888999999888
Q ss_pred c
Q 003768 602 Y 602 (796)
Q Consensus 602 ~ 602 (796)
+
T Consensus 558 g 558 (697)
T PLN03081 558 G 558 (697)
T ss_pred C
Confidence 7
|
|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-21 Score=185.78 Aligned_cols=127 Identities=29% Similarity=0.435 Sum_probs=94.6
Q ss_pred ceeeecceeeccc--CCCCChhhHHHHHHHHHhhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHHcCceEecCCCC
Q 003768 606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (796)
Q Consensus 606 D~VIDG~nva~~~--~~~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s 683 (796)
-+||||+|||+.. +..|++.+|..+|++|++ .|+.+++|++..+........+.+.+.+++|.+.+.+++||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 3799999998532 335899999999999999 68878888876553322234677889999999999999999999
Q ss_pred C--------ccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeecCCCe
Q 003768 684 N--------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPE 738 (796)
Q Consensus 684 ~--------DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~ 738 (796)
+ ||+|||++|...+|+|||||+||||.+ ....|.+|.++|+|+|+|......
T Consensus 81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~ 140 (155)
T PF11977_consen 81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFM 140 (155)
T ss_dssp ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE
T ss_pred CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEE
Confidence 7 999999999999999999999999999 556799999999999999644433
|
It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=162.42 Aligned_cols=285 Identities=14% Similarity=0.057 Sum_probs=193.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~a~~~ 238 (796)
..++.++|...|+++.... ..+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..|...+.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 4577889999999996532 12346889999999999999999999999997643332 356778888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|..+|. ++... .-.+..+++.++.. +++.|++++|.++++.|...+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999994 55543 22266779999999 9999999999999999988763332
Q ss_pred cc----eec--------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCC
Q 003768 319 GH----MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (796)
Q Consensus 319 ~~----ty~--------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (796)
.. .|. .++..+|...|+++ .|+ ...+ ..+...|.+.|++++|.++|+++...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS-----------ILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 21 111 46666666666665 232 2233 455566666777777777777666543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
......+++.++.+|++.|+.++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 2222345666666777777777777777666654 355555566666667777777777777666654 366666666
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHhCCCCCCh
Q 003768 463 LLRVSVE---AGKGDRVYYLLHKLRTSVRKVSP 492 (796)
Q Consensus 463 LI~~~~~---~G~~~~A~~ll~~M~~~~~~~~p 492 (796)
++..++. .|+.+++..+|++|.+....+.|
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6666654 34666677777766665444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-12 Score=139.27 Aligned_cols=250 Identities=13% Similarity=-0.003 Sum_probs=192.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC---
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--- 276 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--- 276 (796)
.+...|++++|+..|.+|.+.+ +.+..++..+...+. ..|++++|..++. .+.......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~ 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence 4567899999999999999763 235568888888888 8899999999994 555432222
Q ss_pred CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchh
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n 356 (796)
+...|..+... |.+.|++++|..+|+++.+.. .++..++ +
T Consensus 106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~---------------------------------~ 145 (389)
T PRK11788 106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGAL---------------------------------Q 145 (389)
T ss_pred HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHH---------------------------------H
Confidence 12457888888 999999999999999998752 1233334 8
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
.++..+.+.|++++|.++|+.|...+..++ ...|..+...+.+.|+.++|..+|+++.+.. ..+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 899999999999999999999988654332 2246678888899999999999999998753 22355777788999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHh
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (796)
++.|+.++|.++++++.+.+-.....+++.|..+|++.|+.++|..+++++... .|.+..+.. ...+.+.+...+|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 999999999999999987642222467889999999999999999999999887 555544433 5555555554433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=148.29 Aligned_cols=303 Identities=12% Similarity=0.034 Sum_probs=213.3
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....++..+|.+.|+.+...... ....+..++..+.+.|++++|+++++.+... .+.+..+|+.+..++.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-------LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 34567778888888887543211 1145566777888888888888888888753 3456777888888887
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
..|+.++|...|. ++... .-.+...+..+... +...|++++|...|+++..... .+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-CcH
Confidence 7788888888884 33322 11144456666666 7888888888888888876541 122
Q ss_pred ceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 003768 320 HMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 320 ~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
.++. .|+..+|...+.++ ..+...+ ..+...|.+.|++++|.++++.+.... +.+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA-----------LALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 2222 67778888887776 2333344 677888888889999999988887643 5567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
.+|..+..+|...|++++|...|+.+.+.. ..+...+..+...+.+.|+.++|..+++.+.+.. ..+..++..+...+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 788888888888999999999888887653 2355667778888888899999999888887643 23477888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh-hHHHH-HHHHHhchHHHHhc
Q 003768 468 VEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~~~~~~p-~t~~~-I~~~~~~~~~~~a~ 511 (796)
...|++++|..+++.|... .+.. ..+.. ...++..+...+|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 8889999999988888876 3332 23333 44455555544443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-11 Score=146.51 Aligned_cols=277 Identities=11% Similarity=-0.011 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+..++. +.|+.++|...+. .+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555666666666666666555432 223444555555555 5566666666663 2222
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC---CCC
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDD 340 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m---~pd 340 (796)
. .-.+..+|..+... ++..|++++|..+++.|.+.+.. +...+. .|+..+|...+..+ .|+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 1 11144556666666 66777777777777777665421 222222 66777777777765 444
Q ss_pred cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 341 ~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..++ ..+...+.+.|+.++|.+.++.+.... +.+..+++.+...|...|+.++|..+|+++.+.. .+
T Consensus 736 ~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 736 SQNA-----------IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred chHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 4444 556777777777777777777776653 4566777777777777788888888887777653 34
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHH-HHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVI 498 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~-~~I 498 (796)
+...++.+...+.+.|+ .+|.++++.+.+.. .-+...+..+...+...|++++|..+|+++.+. .+ .+.++ ...
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 878 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLA 878 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHH
Confidence 56677777777777777 77777777776642 123445566777778888888888888888876 33 33443 336
Q ss_pred HHHHhchHHHHhc
Q 003768 499 AKWFNSKEAARLG 511 (796)
Q Consensus 499 ~~~~~~~~~~~a~ 511 (796)
..+++.|...+|.
T Consensus 879 ~~~~~~g~~~~A~ 891 (899)
T TIGR02917 879 LALLATGRKAEAR 891 (899)
T ss_pred HHHHHcCCHHHHH
Confidence 6666666654443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-12 Score=99.81 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 189 Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
||+++||++|++|++.|++++|+++|++|.+.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999998
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-10 Score=118.76 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
++=|.|+.. ...|.+..+.-+|+.|...|+..+...--.|+...|-.+ ....- |
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N--------s~~~~-----~------------ 170 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN--------SSNVP-----F------------ 170 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--------CCCCc-----c------------
Confidence 344555544 457889999999999999999998888888888777211 11100 0
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
.-.+-|-.|...|- -...+|..|.+.+ -+|+.......||
T Consensus 171 ------------------------------~E~~~Fv~~~~~~E-~S~~sWK~G~vAd--L~~E~~PKT~et~------- 210 (625)
T KOG4422|consen 171 ------------------------------AEWEEFVGMRNFGE-DSTSSWKSGAVAD--LLFETLPKTDETV------- 210 (625)
T ss_pred ------------------------------hhHHHHhhcccccc-ccccccccccHHH--HHHhhcCCCchhH-------
Confidence 00122233333331 1233444444444 3344445556667
Q ss_pred ccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
.+||.|+||--..++|.+++++-.....+.+..+||.||.+-.-.- ..+++.+|....+.||+.|||+++.+
T Consensus 211 ----s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 211 ----SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 9999999999999999999999999988999999999998765332 38899999999999999999999999
Q ss_pred HHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 003768 432 FCNNGDVDK----ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRT 485 (796)
Q Consensus 432 ~~~~G~~~~----A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~-A~~ll~~M~~ 485 (796)
.++.|+++. |.+++.+|++-||.|...+|.-+|.-+++.++..+ |..++.++..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999998766 46788999999999999999999999999988754 5555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-12 Score=98.71 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=109.00 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
.+|.+||.++||-...+.|.++|.+-.....+.+..+||.||.+-+-. ...++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------VGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------ccHHHH-------HHHHH
Confidence 799999999999999999999999999998999999999999887621 124455 47776
Q ss_pred cCCCC-CcchhhhcccCccccccccccCChHHH----HHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A----~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
. .+. |..|+|+++++ ..+.|+++.| .+++.||++.|+.|...+|
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSy------------------------ 315 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSY------------------------ 315 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhH------------------------
Confidence 6 555 99999999999 9999988665 6788999999999999999
Q ss_pred cccccccchhhHHHHHHhccCHHH-HHHHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQR-GFEIYEKMCL----DEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL- 416 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~-A~~lf~~M~~----~gi~p----d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~- 416 (796)
-.+|.-+++.++..+ |..+..++.. +-.+| |..-|.+-+..|.+..+.+.|.++..-++..
T Consensus 316 ---------h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 316 ---------HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred ---------HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 778888888887533 4444444432 33333 5567788899999999999999998776533
Q ss_pred ---CCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003768 417 ---GINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (796)
Q Consensus 417 ---gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~ 487 (796)
-+.|+ .+-|.-+....|....++.-+..|+.|+-.-+-|+..+-.-++++..-+|.++-.-+++..|..-+
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 13333 234666888999999999999999999988788999999999999999999999999999888873
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.5e-07 Score=107.35 Aligned_cols=280 Identities=10% Similarity=-0.038 Sum_probs=202.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|+.+++......... | ..+..+..++...|++++|++.|+++.... +-+...+..+-.++.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~- 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL- 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-
Confidence 4456788999999998885543221 2 234444466667999999999999998642 223445655656666
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+.
T Consensus 122 ---------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~~ 178 (656)
T PRK15174 122 ---------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPRG 178 (656)
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCCH
Confidence 7789999999884 33321 11145567778888 8999999999999988765532222
Q ss_pred cceec------cchhhhHHhhhhcC-C----CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 003768 319 GHMKL------NSQLLDGRSNLERG-P----DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 319 ~~ty~------~g~~~~A~~l~~~m-~----pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
...+. .|+..+|...++.+ . ++...+ ..+...+.+.|+.++|.+.|++..... +-+.
T Consensus 179 ~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 179 DMIATCLSFLNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 11111 78888888888775 1 111122 445677888999999999999988764 4467
Q ss_pred HHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELE 461 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~----A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~ 461 (796)
..+..+-..+...|+.++ |...|++..+. .| +...+..+-..+.+.|+.++|...+++..+.. |+ ...+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~ 322 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 788889999999999986 78889887765 34 45678888888999999999999999988754 54 45566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..+.+.|++++|...|+.+...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7788889999999999999998876
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=120.90 Aligned_cols=244 Identities=12% Similarity=0.057 Sum_probs=169.4
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC
Q 003768 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (796)
Q Consensus 171 ~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G 250 (796)
.++-.|+..|+.|++ +||..+|.-||..|+.+.|- +|..|+-..+..+...|+.++.+... .+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~----------An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKE----------AN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccc----------cc
Confidence 455677777777777 99999999999999999999 99999988888889999999999883 33
Q ss_pred ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH-------cC---------
Q 003768 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-------LG--------- 314 (796)
Q Consensus 251 ~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-------~G--------- 314 (796)
+.+.+. .+-.-||+.|+.+ |...|++..-..+=+.|.. .|
T Consensus 74 d~Enpk------------------ep~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPK------------------EPLADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCC------------------CCchhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 333322 2234579999999 9999987543222222221 11
Q ss_pred --------CCCCcceec-----cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhcc--CHHHHHHHHHHHH
Q 003768 315 --------QFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMC 379 (796)
Q Consensus 315 --------i~Pd~~ty~-----~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g--~~~~A~~lf~~M~ 379 (796)
.-||..+-. .|.+..+++++..+ |...-+ +...- +.+.. ...-..++....+
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~-Pvsa~~-----------~p~~v-fLrqnv~~ntpvekLl~~ck 196 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV-PVSAWN-----------APFQV-FLRQNVVDNTPVEKLLNMCK 196 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC-Cccccc-----------chHHH-HHHHhccCCchHHHHHHHHH
Confidence 122222222 44455555555444 111111 11111 11111 1223334443333
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 380 LDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 380 ~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
. +. .|+..+|.+++++...+|+++.|..++.+|++.|+..+..-|-+||-+ .++..-+..+...|.+.||.|+..
T Consensus 197 s-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 197 S-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred H-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc
Confidence 2 22 599999999999999999999999999999999999999989999887 888888999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003768 459 ELEALLRVSVEAGK 472 (796)
Q Consensus 459 ty~~LI~~~~~~G~ 472 (796)
|+.--+-.+..+|.
T Consensus 273 T~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 273 TQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHhhhcchh
Confidence 99877777776555
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-06 Score=104.00 Aligned_cols=277 Identities=7% Similarity=-0.059 Sum_probs=205.7
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
...++.++|...|+.+.... |+ +...|..+-..+.+.|++++|+..|+++.... +-+...+..+..++.
T Consensus 87 l~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV--- 155 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH---
Confidence 35789999999999995432 21 23567777889999999999999999998642 234667778888888
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.++|...+. .+... .-.+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 7899999999884 33221 11122222222 23 667899999999999987764222222
Q ss_pred eec--------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHH----HHHHHHHHHhCCCC
Q 003768 321 MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVP 384 (796)
Q Consensus 321 ty~--------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~----A~~lf~~M~~~gi~ 384 (796)
.+. .|+..+|...+++. .|+ ...+ ..+-..|.+.|++++ |...|++..... +
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~-----------~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR-----------RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 211 68888888888876 333 3334 667788889999886 899999888753 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH-HH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EA 462 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty-~~ 462 (796)
-+..++..+...+.+.|++++|...+++.... .|+ ...+..+-..|.+.|+.++|.+.++.+.+.. |+...+ ..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~ 357 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRY 357 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence 46778999999999999999999999998865 355 3456667788999999999999999998754 665443 33
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..++...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456789999999999999998776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-07 Score=104.00 Aligned_cols=219 Identities=14% Similarity=0.065 Sum_probs=154.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccc
Q 003768 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (796)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~ 290 (796)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|.-+ ..+ +...+++++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 45677889999999999999999999 778888877 884 34333 555 66779999999
Q ss_pred cccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
..+.++.+.+. .|-.-|| +.+..+|...|++.-
T Consensus 69 ---h~~And~Enpk-----------ep~aDty---------------------------------t~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTY---------------------------------TNLLKAYRIHGDLIL 101 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHH---------------------------------HHHHHHHHhccchHH
Confidence 88888887776 3555566 777777777776433
Q ss_pred HHHHHHH-HH-------hCCC-----------------CCCHHHHHHHHHHHHhcCChHHHHHH----------------
Q 003768 371 GFEIYEK-MC-------LDEV-----------------PMNEASLTAVGRMAMSMGDGDMAFDM---------------- 409 (796)
Q Consensus 371 A~~lf~~-M~-------~~gi-----------------~pd~~ty~~LI~~~~~~g~~~~A~~l---------------- 409 (796)
++..++ |. ..|+ -||.. ++|....-.|.++.+.++
T Consensus 102 -fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 102 -FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred -HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 222222 11 1111 12222 122222223333333322
Q ss_pred --------------HHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003768 410 --------------VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (796)
Q Consensus 410 --------------~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~ 475 (796)
....+...-.|+..+|..++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 222222212599999999999999999999999999999999999999988899877 788888
Q ss_pred HHHHHHHHHhCCCCCChhHHHH-HHHHHhchH
Q 003768 476 VYYLLHKLRTSVRKVSPSTADV-IAKWFNSKE 506 (796)
Q Consensus 476 A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~ 506 (796)
+..++..|+..+..|..+|+.. +...++++.
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999966666668766 777777655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-08 Score=69.53 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003768 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (796)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-08 Score=69.86 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=20.0
Q ss_pred CCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 417 gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-07 Score=99.73 Aligned_cols=256 Identities=17% Similarity=0.132 Sum_probs=103.8
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.-+.++.++|+++++.-.... ..| |..-|..+-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~- 88 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c-
Confidence 336688899999996542111 112 2234444444556678999999999999876543 55566666666 4
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~P 317 (796)
..++.++|..++. +.-+. ..+...+..++.. +.+.++++++..++++.....- .+
T Consensus 89 ---------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 89 ---------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred ---------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC
Confidence 5677888888773 22111 1244446677777 8888999999999988765432 22
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
+...| ..+-..+.+.|+.++|.++|++..+.. +-|....+.++..+
T Consensus 145 ~~~~~---------------------------------~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 145 SARFW---------------------------------LALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp -HHHH---------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred CHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 22223 556677788999999999999888763 22577888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A 476 (796)
...|+.+++..+++...+.. ..|...+..+-.+|...|+.++|...|+...... | |......+-+++...|+.++|
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 99999999999998877663 4566677888889999999999999999987754 5 677778888999999999999
Q ss_pred HHHHHHHHh
Q 003768 477 YYLLHKLRT 485 (796)
Q Consensus 477 ~~ll~~M~~ 485 (796)
.++..+.-.
T Consensus 268 ~~~~~~~~~ 276 (280)
T PF13429_consen 268 LRLRRQALR 276 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 988776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-05 Score=95.02 Aligned_cols=254 Identities=11% Similarity=0.050 Sum_probs=186.7
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcccc
Q 003768 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~ 241 (796)
+..++|.+.|+.....+. ..| +...|+.+-..+...|++++|+..|+..... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 466789999998865441 223 3356777778888999999999999998864 344 456666666666
Q ss_pred CCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
..|++++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~--P~~~~ 434 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLD--PDFIF 434 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--ccCHH
Confidence 7799999999995 33322 11245567777777 888999999999998887653 43221
Q ss_pred eccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 322 y~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
. | ..+-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 435 ~---------------------~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 435 S---------------------H-----------IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred H---------------------H-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 1 1 456677888999999999999988642 345788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCc--c------cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~--~------ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
++++|...|+...... |+. . .++..+..+...|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 321 1 11222233444699999999999987754 22345788999999999999
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-05 Score=92.43 Aligned_cols=293 Identities=11% Similarity=-0.000 Sum_probs=192.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
..-+.++.++|...|+..+. ..|+...|..+-.+|.+.|++++|++.++...+.. +-+...|..+=.++.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD- 205 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-
Confidence 34567889999999999753 33555788888899999999999999999988653 224556766767777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCc-----------------------hhhhccCCCCCcchhhhc-----------
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TELGDSRDMDNNGQLDYG----------- 284 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s-----------------------~em~~~~gv~d~~tyn~L----------- 284 (796)
..|++++|..-|....... .+..+. .-.+..++..+
T Consensus 206 ---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 206 ---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred ---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCCc
Confidence 7788888876542110000 000000 00000000000
Q ss_pred ---------------ccCccc----cccccccCChHHHHHHHHHHHHcC-CCCCc-ceec--------cchhhhHHhhhh
Q 003768 285 ---------------SSPMID----KLESNSSYRFDDLDSTFNEKENLG-QFSNG-HMKL--------NSQLLDGRSNLE 335 (796)
Q Consensus 285 ---------------I~~~~~----~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~-~ty~--------~g~~~~A~~l~~ 335 (796)
..+... ..+....+.+++|...|++..+.+ ..|+. ..|. .|+.++|...++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000000 000112357888999999888765 33432 2222 677888888877
Q ss_pred cC---CCCc-ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003768 336 RG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK 411 (796)
Q Consensus 336 ~m---~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~ 411 (796)
.. .|+. ..| ..+-..+...|++++|...|++..... +-+..+|..+...+...|++++|...|+
T Consensus 356 kal~l~P~~~~~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 356 KSIELDPRVTQSY-----------IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHcCCCcHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 4442 244 556666778888888888888877653 3456788888888888889999988888
Q ss_pred HHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 412 RMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 412 ~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+. .| +...|..+-..+.+.|+.++|...|+...... .-+...|+.+-..+...|++++|...|++....
T Consensus 424 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 424 KSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 87665 34 34556666677778888889988888877642 224667788888888888888888888887665
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-05 Score=86.97 Aligned_cols=268 Identities=7% Similarity=-0.024 Sum_probs=154.0
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHccc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA 240 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL--~a~~~~~ 240 (796)
.|+...|++.+..-... ...|. ..|-..-.+..+.|+++.|.+.|.++.+. .|+...+..+. ..+.
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH---
Confidence 47888888777765221 11232 44544455668999999999999999863 56654443222 3344
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.+.|...+. ++.+. .-.+......+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999994 44443 21255667888888 999999999999999999887553221
Q ss_pred -------eec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 321 -------MKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 321 -------ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
+|. .........+++.. ..+.-.. ..+...+...|+.++|.+++++..+.
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~-----------~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ-----------VAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 110 00001111111111 1122222 44555566666666666666655552
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.||... .++.+.+..++.+++.+..+...+. .|+.. .+.++=..|.+.|++++|.+.|+...+.. |+..+|
T Consensus 293 --~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~ 364 (398)
T PRK10747 293 --QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDY 364 (398)
T ss_pred --CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH
Confidence 333311 1223333446666666666665543 23333 23344445556666666666666666533 666666
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
..|-..+.+.|+.++|.+++.+
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666665554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00011 Score=94.20 Aligned_cols=296 Identities=10% Similarity=-0.019 Sum_probs=187.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|++..... | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456788999999999986532 1 233667778889999999999999999998643 2234444444333321
Q ss_pred cccC--------------------------------CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhccc
Q 003768 239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS 286 (796)
Q Consensus 239 ~~~~--------------------------------~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~ 286 (796)
.... +..+...|+.++|...|. +.... .-.+...+..+-.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence 0000 000114577777777774 32221 1113344555656
Q ss_pred CccccccccccCChHHHHHHHHHHHHcCCCCCcc--eec-------cchhhhHHhhhhcCCCCccccccccccc---ccc
Q 003768 287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH--MKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDN---QDA 354 (796)
Q Consensus 287 ~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~--ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~---~~~ 354 (796)
. |.+.|++++|...|++..+.. |+.. .|. .++..+|...++.+.....+-..-.+.. ...
T Consensus 504 ~------~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 504 D------LRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred H------HHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 6 888889999999888877642 3322 111 5667777777776622110000000000 000
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.-.+...+...|+.++|.++++. .+.+...+..|...+.+.|+.++|...|++..+.. ..+...+..+...|..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 01234567778888888888772 24455667778888888889999988888877652 2346677778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.++++...+. .|+ ...+..+-.++...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888877654 243 445566667777888888888888888765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-05 Score=76.97 Aligned_cols=200 Identities=18% Similarity=0.116 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...+..+...+.+.|++++|.+.|+++.+.. +-+...+..+-..+. ..|+.++|...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~---------- 89 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR---------- 89 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH----------
Confidence 3567777788889999999999999887643 223455555555555 5566666666663
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
+..+.. |+ ...+
T Consensus 90 --------------------------------------~al~~~--~~~~~~~--------------------------- 102 (234)
T TIGR02521 90 --------------------------------------RALTLN--PNNGDVL--------------------------- 102 (234)
T ss_pred --------------------------------------HHHhhC--CCCHHHH---------------------------
Confidence 222221 11 1111
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...+...|++++|.+.|++...... ......+..+...+...|+.++|...+++..... ..+...+..+
T Consensus 103 ------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 103 ------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 3344555666777777777777665322 1233456666677777777777777777766542 1234556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+...|+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777778888887777777665 2345566666777777778888877777766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=89.67 Aligned_cols=282 Identities=8% Similarity=-0.028 Sum_probs=183.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|..++++....- ..+...+..+...+.+.|+.++|+..+++..+. -+.+.. +..+-.++.
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~- 127 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK- 127 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH-
Confidence 4456788888999999864321 122355667778888999999999999998865 233444 666666666
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|+.++|...+. +.... .-.+...+..+... +...+..+.|...++.... .|+
T Consensus 128 ---------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 128 ---------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHH
Confidence 6788999998884 33332 11133334445555 6677888888877764432 222
Q ss_pred cce--------------e----c-cchh---hhHHhhhhcC------CCCcc-cccccccccccchhhHHHHHHhccCHH
Q 003768 319 GHM--------------K----L-NSQL---LDGRSNLERG------PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 319 ~~t--------------y----~-~g~~---~~A~~l~~~m------~pd~~-ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
... + . .++. ++|+..++.+ .|+.. .+. ......+..+...|+++
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~-------~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ-------RARIDRLGALLARDRYK 254 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-------HHHHHHHHHHHHhhhHH
Confidence 100 0 0 1122 4555555554 12211 110 00001133456778999
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHHcCChHHHHH
Q 003768 370 RGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-----~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
+|...|+.+.+.+-. |+-.- -.+..+|...|++++|..+|+++.... |. ...+..|..++...|+.++|.+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999988632 43322 225778999999999999999987542 32 2345566778899999999999
Q ss_pred HHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHG-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~g-----------v~pd~---~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+++.+.+.. -.|+. ..+..+...+...|+.++|..+|+++...
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998752 12342 24456777888999999999999999876
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-05 Score=76.95 Aligned_cols=179 Identities=12% Similarity=0.035 Sum_probs=134.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...+++..... |+. ..+ ..+...|...|++++|.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 85 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDYLAY---------------------------------LALALYYQQLGELEKAE 85 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 778889999999988887653 442 222 66777888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+.|++..... +.+...+..+...+...|++++|...+++.......| ....+..+-..+...|+.++|.+.+++..+.
T Consensus 86 ~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 86 DSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888764 3456788889999999999999999999988753222 3445666778889999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHh
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (796)
. ..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...++
T Consensus 165 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 165 D-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred C-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 4 224567888999999999999999999998876 2223333333 4444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6e-05 Score=96.52 Aligned_cols=250 Identities=12% Similarity=0.051 Sum_probs=180.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~g 274 (796)
.+-..+...|++++|++.|++..+.. | +...+..+-..|. +.|+.++|...+. +.... .
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~ 525 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-K 525 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-C
Confidence 34456778999999999999998753 4 4556666777777 7899999999995 33332 1
Q ss_pred CCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce----------------e-ccchhhhHHhhhhcC
Q 003768 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------K-LNSQLLDGRSNLERG 337 (796)
Q Consensus 275 v~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t----------------y-~~g~~~~A~~l~~~m 337 (796)
-.+...+-.+.-. +...++.++|...++.+......++... + ..|+.++|..+++.-
T Consensus 526 P~~~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 526 PNDPEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred CCCHHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 1122222222223 5567889999988877543322222111 0 167888888888865
Q ss_pred CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 338 ~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
..+...+ ..+-..+.+.|+.++|.+.|++..... +-+..++..++..|...|+.++|.++++...+.
T Consensus 600 p~~~~~~-----------~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 600 PPSTRID-----------LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred CCCchHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 4444444 667788899999999999999998864 446889999999999999999999999977653
Q ss_pred CCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 418 INPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 418 i~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv--~p---d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.|+ ...+..+-..+...|+.++|.++++.+....- .| +...+..+-..+...|+.++|...++....
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444 34455566778899999999999999887532 12 224556667788899999999999988753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=83.37 Aligned_cols=273 Identities=10% Similarity=0.004 Sum_probs=156.1
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCS 237 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd-~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~a~~ 237 (796)
...++...|++.+...... .|+ ...|-..-.++.+.|+.+.|.+.|.++.+.- |+.. ..-..-..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 3568888999999776221 232 1334444567778899999999999987543 4432 2222344444
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|+.+.|...+. ++.+. .-.+...+..+... +.+.|++++|.+++..+.+.++.+
T Consensus 165 ----------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 165 ----------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred ----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCC
Confidence 6799999999994 55553 22255567777778 999999999999999999987543
Q ss_pred Ccceec------cchhhhH-----HhhhhcC---C-----CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 318 NGHMKL------NSQLLDG-----RSNLERG---P-----DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 318 d~~ty~------~g~~~~A-----~~l~~~m---~-----pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
...... .+.+.++ ...+..+ . .+...+ -.+...+...|+.++|.+++++.
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~-----------~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK-----------IALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH-----------HHHHHHHHHCCChHHHHHHHHHH
Confidence 332110 1111111 1122222 1 133333 55556666666666666666666
Q ss_pred HhCCCCCCHHHH-HHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcc--cH-HHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 379 CLDEVPMNEASL-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR--SY-GPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 379 ~~~gi~pd~~ty-~~LI~~~--~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty-~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
.+.. ||.... -.++..+ ...++.+.+.+.++...+. .|+.. .+ .++=..+.+.|++++|.+.|+......
T Consensus 290 l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 290 LKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred HhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 6542 222210 0022222 2235555566666554433 34433 22 233344556666666666666433333
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
..|+...+..|-..+.+.|+.++|.+++++
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346666666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=90.72 Aligned_cols=251 Identities=15% Similarity=0.084 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv 275 (796)
.+-..+.+.|++++|+++++.-......|+...|-.++..++. ..|+.+.|...+. .+... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356677899999999999776555435666666655554442 4577888888884 33332 11
Q ss_pred CCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccch
Q 003768 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~ 355 (796)
.+...+..++. +...+++++|..++.+.-++. ++...+
T Consensus 76 ~~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~l--------------------------------- 113 (280)
T PF13429_consen 76 ANPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRYL--------------------------------- 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-------ccccccccccccccccccccc--cccchh---------------------------------
Confidence 12222333333 246778888887776654432 222222
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~ 433 (796)
..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|..++++..+. .|+ ....+.++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 56777888999999999999998754 34568888999999999999999999999998775 464 667888999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a 510 (796)
..|+.+++.+++....... ..|...+..+-.+|...|+.++|..+|++.... .+ +|.+... ...+...|...+|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 9999999999998887754 345567789999999999999999999998875 44 3433333 4444444544433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00063 Score=83.46 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=184.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.++.++|...+++.... .| .+.. +..+-..+.+.|+.++|+..|+++.+..- -+...+..+..++.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~- 161 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALR- 161 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-
Confidence 345778999999999998543 12 2224 77888889999999999999999997532 23444455555555
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccC----CCC----CcchhhhcccCccccccccccCCh---HHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~----gv~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (796)
..|..++|...+... .... .+. ....-..+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~~~-------~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAIDDA-------NLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 567888888777411 1100 000 00001111122 3334445 6778788
Q ss_pred HHHHHc-CCCCCcc-e------------eccchhhhHHhhhhcCC---CCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 308 NEKENL-GQFSNGH-M------------KLNSQLLDGRSNLERGP---DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 308 ~eM~~~-Gi~Pd~~-t------------y~~g~~~~A~~l~~~m~---pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
+.+.+. .-.|+.. . +..++..+|...|+.+. ++.-.| ..-.+-..|...|++++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~---------a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW---------AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH---------HHHHHHHHHHhcCCcHH
Confidence 888754 2233321 1 22667788888888871 111111 00124567888999999
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---cccHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFC 433 (796)
Q Consensus 371 A~~lf~~M~~~gi~p---d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----------i~Pd---~~ty~~LI~~~~ 433 (796)
|..+|+++....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999877543111 13456667778889999999999999887652 1122 123445666788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|+.++|.++++++.... .-+...+..+...+...|+.++|+..+++....
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8899999999999987653 234667788888888999999999999988876
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=81.34 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=194.1
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.++++.++|+.+++.|++.. | -.+..|.-+-.++...|+.+.|...|.+..+ +.|+.+...+-+.-+-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4567899999999999996532 1 1347899999999999999999999999886 45766655555544443
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|..-+. ...+.... =.+.|+-|=-. +-..|.+-.|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3578888888774 22222210 23446666555 88899999999999887664 344
Q ss_pred cc--eeccchhhhHHhhhhcC----------CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 319 GH--MKLNSQLLDGRSNLERG----------PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 319 ~~--ty~~g~~~~A~~l~~~m----------~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
-. -+|.|.+.+....|++- .|+ .+.| .-|-.-|...|.++-|...+++-.+. .|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~-----------gNla~iYyeqG~ldlAI~~Ykral~~--~P 317 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH-----------GNLACIYYEQGLLDLAIDTYKRALEL--QP 317 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc-----------cceEEEEeccccHHHHHHHHHHHHhc--CC
Confidence 21 23344444444444432 444 3333 33444567889999999999987764 45
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHH
Q 003768 386 N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEA 462 (796)
Q Consensus 386 d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~ 462 (796)
+ ...|+.|..++-..|++.+|.+.++..... .|+ ..+-+-|=..|...|.+++|..+|..-.+ +.|+- ...|.
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nN 393 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNN 393 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhh
Confidence 4 568999999999999999999999887654 333 34556677888888999999888887665 34543 45678
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
|-..|-+.|++++|..-+++..+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh
Confidence 88888888999999888887664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0015 Score=69.02 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=155.9
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~-lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
-++-+|-.++ ...++|.++|-+|.+ ..|..+--+. |=+.|-+.|.++.|+++...+.++ ||
T Consensus 39 Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd 100 (389)
T COG2956 39 YVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD 100 (389)
T ss_pred HHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC
Confidence 3444555555 567889999999944 2233343333 446677889999999999988864 33
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (796)
.|++-=+.+.- ++.++ |-..|.+|.|..
T Consensus 101 -lT~~qr~lAl~------------------------------qL~~D---------------------ym~aGl~DRAE~ 128 (389)
T COG2956 101 -LTFEQRLLALQ------------------------------QLGRD---------------------YMAAGLLDRAED 128 (389)
T ss_pred -CchHHHHHHHH------------------------------HHHHH---------------------HHHhhhhhHHHH
Confidence 33433332222 12222 445555555555
Q ss_pred HHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 306 TFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
+|..+.+.|. ..+.|+ --|+.-|-...++++|.++-+++.+.|-.+
T Consensus 129 ~f~~L~de~e----------fa~~Al------------------------qqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 129 IFNQLVDEGE----------FAEGAL------------------------QQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHhcchh----------hhHHHH------------------------HHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 5555544321 011222 346777888888899998888888765444
Q ss_pred CHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 386 NEA----SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 386 d~~----ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
..+ -|--|...+....+.+.|..++++-.+. .|+.+--+.++ .-+...|+..+|.+.++...+.+..--..+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 322 3444555555677888888888876655 24433333333 4566788999999999988888755556677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
..|..+|...|+.++....+.++.+...++.+.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 888899999999999999998888885565554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00073 Score=82.42 Aligned_cols=286 Identities=9% Similarity=-0.029 Sum_probs=176.1
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....++.++|.++++++.+... -+...+..++..+...++.++|++.+..+... .|+...|-.++..+.
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-- 180 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-------TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-- 180 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence 3345777788888888844321 11244556677888888888888888888754 455555544433333
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH---------
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK--------- 310 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM--------- 310 (796)
..++..+|+..+. ++.+. .-.+.-.+.-++.. ..+.|-...|.++..+-
T Consensus 181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHhCccccCHHHH
Confidence 2344445777773 44443 11122223333344 45555555555443321
Q ss_pred -----------HHcCCCCCcceec--cchhhhHHhhhhcC------CCCc-ccccccccccccchhhHHHHHHhccCHHH
Q 003768 311 -----------ENLGQFSNGHMKL--NSQLLDGRSNLERG------PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 311 -----------~~~Gi~Pd~~ty~--~g~~~~A~~l~~~m------~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
.+.+..|+.. .. -.-.+.|+.-++.+ .|.. ..|..+. -=.|-++.+.+++.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~-~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~-------~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRS-ETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR-------IDRLGALLVRHQTAD 310 (822)
T ss_pred HHHHHHHHHHHHhhccccccc-chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH-------HHHHHHHHHhhhHHH
Confidence 1111111110 00 00122233333332 1211 1121000 123557778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHcCChHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
+.+.|+.|...|.+.-..+--++.++|...+.+++|+.++.+..... ..++......|..+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999977556788899999999999999999999986542 2334445678999999999999999999
Q ss_pred HHHHhCC-------------CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 446 EHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 446 ~~M~~~g-------------v~pd~~ty-~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+.+.- -.||-..+ ..++..+...|++.+|+++++++...
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998731 11333333 34566688999999999999999876
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.9e-06 Score=58.69 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0015 Score=81.43 Aligned_cols=229 Identities=8% Similarity=-0.021 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+-..+.. |+..+|+..|.+..... |+......+..++. ..|+.++|...|. .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34566666656655 88999999888877543 66544333333334 6799999999994 33
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
... -++...+..+... +.+.|++++|...++...... |+.... +
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l---------------------~----- 579 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL---------------------Y----- 579 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------H-----
Confidence 321 1122234444445 778899999999998887753 332111 0
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~L 428 (796)
..+...+.+.|++++|...|++..+. .|+...|..+...+.+.|+.++|...+++.... .|+. ..++.+
T Consensus 580 ------~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 580 ------WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ------HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 12222334559999999999998865 467889999999999999999999999998765 4554 455556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+...|+.++|.++++...+.. | +...+..+-.++...|++++|...|++....
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999999999999988753 5 4567788889999999999999999998866
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=56.66 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd 456 (796)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=57.01 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p 224 (796)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0014 Score=74.18 Aligned_cols=219 Identities=8% Similarity=-0.033 Sum_probs=157.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-------HYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-------tyn~ 231 (796)
.....++.+.|...++++.+.. | -+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4456788999999999985433 1 123688889999999999999999999999887653321 2333
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
++.... +....+...+++. ++.+. .+ +......+..+ +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 2222334444442 22211 11 33345555666 88899999999999888
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
.+.. ||.. -.++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~~--~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKRQ--YDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred HhcC--CCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 7642 2221 224455666799999999999988763 3456678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.++-+.|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998865 6999999999999999999999999998653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.9e-05 Score=55.53 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0035 Score=71.86 Aligned_cols=274 Identities=14% Similarity=0.055 Sum_probs=191.0
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHccccC
Q 003768 166 DSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE-GI-KLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 166 ~~~A~~vf~~M~~~g~~~~~g~~Pd~~-tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi-~pd~~tyn~LL~a~~~~~~~ 242 (796)
..+|...|+.+- . ..+|+. ...-+=.+|-..+++++|.++|+..++. .. .-+..+|.++|.-+-+.
T Consensus 335 ~~~A~~~~~klp------~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--- 403 (638)
T KOG1126|consen 335 CREALNLFEKLP------S--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--- 403 (638)
T ss_pred HHHHHHHHHhhH------H--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---
Confidence 346677776641 1 123323 3333446788889999999999999853 22 24678899988766521
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC-Ccce
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHM 321 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P-d~~t 321 (796)
-++.++. +++.+. +-..-.||.++=++ |.-.++.+.|.+.|+.-... .| ..++
T Consensus 404 -----------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faYa 457 (638)
T KOG1126|consen 404 -----------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAYA 457 (638)
T ss_pred -----------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccchh
Confidence 1222332 333332 11144789999999 99999999999999876554 35 5677
Q ss_pred ec--------cchhhhHHhhhhcC-CCCcccccccccccccchhhH---HHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 003768 322 KL--------NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIR---LSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (796)
Q Consensus 322 y~--------~g~~~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~l---I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (796)
|+ ....+.|...|+.- ..|.--| |++ =-.|.|.++++.|+-.|+...+-+ +-+.+.
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-----------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi 525 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHY-----------NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVI 525 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-----------HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhH
Confidence 77 55677777777765 6666666 554 345788899999999998877654 446777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSV 468 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~ 468 (796)
...+-..+-+.|+.|+|++++++.....-+--..-|. ....+...++.++|+..++++++ +.|++. .|-.|-..|.
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK 602 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7778888889999999999999877654333333444 44556667899999999999988 567765 5566677888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChh
Q 003768 469 EAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
+.|+.+.|+.-|.-+.+. .|++.
T Consensus 603 ~~~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred HHccchHHHHhhHHHhcC--CCccc
Confidence 999999998888887766 55543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0094 Score=74.38 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=109.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+-..+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 445566788999999999999998765 333334444444555669999999999988754 57788888888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhchHHHHh
Q 003768 436 GDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARL 510 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~~~~a 510 (796)
|+.++|...+++..+.. |+. ..++.|-..+...|+.++|..+|++..+. .|... .++.-..+...|...+|
T Consensus 623 G~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 623 HNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999988864 654 45566667899999999999999998876 44332 33444444555544333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=74.97 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.+..-+-..|...|+++.|..++.+..+. +.-.+.-...+++..|+. .|...+++++|..+|. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~------~y~~~~k~~eAv~ly~-------~ 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL------VYRSLGKYDEAVNLYE-------E 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH------HHHHhccHHHHHHHHH-------H
Confidence 56666889999999999999999998743 111334445555554442 2336788888888884 3
Q ss_pred hhc----cCCCCC---cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCc
Q 003768 269 LGD----SRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQ 341 (796)
Q Consensus 269 m~~----~~gv~d---~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~ 341 (796)
+.. ..|-.+ ..+++.|=.. |++.|++++|...+++-.+.--. ...-+.+++...+
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~~l---------- 328 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAAQL---------- 328 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHHHHH--hhccChHHHHHHH----------
Confidence 211 112222 2336666566 99999999998877654332000 0000012222222
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
+.+..-++..+++++|..++....+ .-..++ .-+|+.|-..|-+.|++++|.++|++..
T Consensus 329 --------------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 329 --------------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred --------------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6677888899999999999886543 112233 3589999999999999999999999876
Q ss_pred HC----CC--CCC-cccHHHHHHHHHHcCChHHHHHHHHHH----HhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 415 SL----GI--NPR-LRSYGPALSVFCNNGDVDKACSVEEHM----LEHGVY-PE-EPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 415 ~~----gi--~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M----~~~gv~-pd-~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
.. +- .+. -..++-|=..|.+.+....|.++|.+- +..|.. |+ ..+|..|...|.+.|+++.|.++.+
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43 11 122 345666777888899999999998764 333432 33 4688999999999999999999998
Q ss_pred HHH
Q 003768 482 KLR 484 (796)
Q Consensus 482 ~M~ 484 (796)
...
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.005 Score=75.26 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=72.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVS 467 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-----v~pd~~ty~~LI~~~ 467 (796)
.+-++...|+..++.+.++.|...|...-..+--.+-++|...+..++|..++..+.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344666788899999999999888765334466678888999999999999999886542 233455567888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...+++++|..+++.+...
T Consensus 378 ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 9999999999999998874
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.8e-05 Score=52.75 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi 222 (796)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0034 Score=74.16 Aligned_cols=240 Identities=10% Similarity=-0.062 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 189 Pd~~tyn~lI~a~~k-----~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
.+...|...+.+-.. .++.++|+++|++..+. .|+ ...|..|-.++......+ .....++.++|...+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g-~~~~~~~~~~A~~~~~-- 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMG-IFDKQNAMIKAKEHAI-- 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcC-CcccchHHHHHHHHHH--
Confidence 445667777766432 23467999999998854 454 334444333332111000 0013345666666663
Q ss_pred ccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcc
Q 003768 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS 342 (796)
Q Consensus 263 ~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ 342 (796)
+.... +-.+...|..+-.. +...|++++|...|++..+.. |+....
T Consensus 329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~a-------------------- 374 (553)
T PRK12370 329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISADI-------------------- 374 (553)
T ss_pred -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHHH--------------------
Confidence 22221 11133444444444 556667777777776665543 332111
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
| ..+-..+...|++++|...|++..+..-. +...+..++..+...|++++|...+++..+.. .|+.
T Consensus 375 -~-----------~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~ 440 (553)
T PRK12370 375 -K-----------YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN 440 (553)
T ss_pred -H-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence 1 34445566667777777777776654311 12222333444555677777777776665442 2332
Q ss_pred c-cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 423 R-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 423 ~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t-y~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
. .+..+-..+...|+.++|.+.+..+... .|+... .+.|-..|+..| ++|...++.+.+
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 2 2444445556677777777777665443 233222 333444445555 356665555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0083 Score=70.90 Aligned_cols=247 Identities=12% Similarity=0.023 Sum_probs=158.9
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 166 DSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 166 ~~~A~~vf~~M~~~g~~~~~g~~Pd~-~tyn~lI~a~~---------k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
..+|..+|++-.+ ..|+- ..|..+-.++. ..+++++|...+++..+.. +-+...+..+=..
T Consensus 277 ~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~ 347 (553)
T PRK12370 277 LQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4678888988743 22332 34443333332 3345899999999998653 2245666666555
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi 315 (796)
+. ..|+.++|...|. +..+. +-.+...|..+-.. +...|++++|...+++..+..
T Consensus 348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~- 402 (553)
T PRK12370 348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD- 402 (553)
T ss_pred HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence 55 6789999999995 33332 11144456666666 889999999999999987763
Q ss_pred CCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (796)
Q Consensus 316 ~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (796)
|+...+ + ..+...+...|++++|.+.+++.....-+-+...+..+-.
T Consensus 403 -P~~~~~---------------------~-----------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 403 -PTRAAA---------------------G-----------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVM 449 (553)
T ss_pred -CCChhh---------------------H-----------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 332111 0 2233346668899999999999876542224556777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~t-y~~LI~~~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
++...|+.++|...+.++... .|+..+ .+.+-..|+..| ++|...++.+.+. .-.+...-+..++ |.-.|+-
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~ 523 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEA 523 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhh
Confidence 899999999999999887544 344333 344445667777 4888877777653 2233333333444 4445776
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
+.+..+ +++.+.
T Consensus 524 ~~~~~~-~~~~~~ 535 (553)
T PRK12370 524 IAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHH-HHhhcc
Confidence 666666 777765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.005 Score=69.86 Aligned_cols=255 Identities=12% Similarity=0.020 Sum_probs=145.2
Q ss_pred hhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003768 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (796)
Q Consensus 152 ~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (796)
+..+.-+...+.++.+.|.+.++...+.- | .+.+..--+....+...|+++.|++.++.+.+.. +-+...+-.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p----~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELA--G----NDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C----cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33444445556677777877777763211 1 1111222233556666788888888888877664 224556666
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh-cccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY-GSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~-LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
+..++. ..|+.++|...+. .+.+. ++.+.-.+.. -+.+ .......+.-+.+...+..+
T Consensus 193 l~~~~~----------~~~d~~~a~~~l~-------~l~k~-~~~~~~~~~~l~~~a---~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 193 AEEAYI----------RSGAWQALDDIID-------NMAKA-GLFDDEEFADLEQKA---EIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHH----------HHhhHHHHHHHHH-------HHHHc-CCCCHHHHHHHHHHH---HHHHHHHHHHhcCHHHHHHH
Confidence 666666 6677777777773 33332 2221111100 0000 00001111111112222233
Q ss_pred HHcCCCC-----Ccceec--------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHH--HHhccCHHHHH
Q 003768 311 ENLGQFS-----NGHMKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSE--DAKKYAFQRGF 372 (796)
Q Consensus 311 ~~~Gi~P-----d~~ty~--------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~--~~k~g~~~~A~ 372 (796)
...- | +...+. .|+.++|...+++. .||.... .-.++.. ....++.+.+.
T Consensus 252 ~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~----------~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 252 WKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI----------SLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc----------hhHHHHHhhhcCCCChHHHH
Confidence 2221 1 111111 66666666666665 3443310 0012332 23346778888
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 373 EIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
+.++...+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+-..+.+.|+.++|.+++++-
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888777654 3433 5566889999999999999999996445555799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.008 Score=68.24 Aligned_cols=245 Identities=17% Similarity=0.115 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
.+|..+-+.+-..|++.+|+.+|+.|.+. +| .+..|.-+-.++. ..|+++.|.+.|. +.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999965 34 4567777777777 6788888888884 2222
Q ss_pred ccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceec--------cchhhhHHhhhhcC-CC
Q 003768 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL--------NSQLLDGRSNLERG-PD 339 (796)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~--------~g~~~~A~~l~~~m-~p 339 (796)
-....-++.+ ...|+++ .|++++|..-+.+-.+- .|. .+.|+ .|.+..|...|++- .-
T Consensus 179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 2111112222 3344333 78888888777665543 232 33444 89999999999886 21
Q ss_pred CcccccccccccccchhhHHHHHHhcc-------CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003768 340 DQSRKKDWSIDNQDADEIRLSEDAKKY-------AFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVK 411 (796)
Q Consensus 340 d~~ty~~~~~~~~~~~n~lI~~~~k~g-------~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~ 411 (796)
| -.++++|...| .+++|...+..... ..| ..++|..|...|-..|.+|.|.+.++
T Consensus 248 d---------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 248 D---------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred C---------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 1 12344555444 55555555554433 345 46678888888999999999999999
Q ss_pred HHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 412 ~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+. .|+ ...|+-|-.++-..|++.+|...+....... |+ ....+.|-..|...|.+++|..++..-.+-
T Consensus 311 ral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 311 RALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 87654 566 4689999999999999999999999887754 43 456788889999999999999999887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.3e-05 Score=50.98 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0058 Score=66.71 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=125.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcceec-------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHh
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAK 364 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k 364 (796)
-+|++++|.+.+.|-....-.-....|+ .|++++|+..|-.+ ..++.+. --+.+-|--
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-----------~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-----------VQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHH
Confidence 4678888888888876653222222233 67777777776665 2222222 223445555
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
..+...|.+++-+... -++-|....+-|.+.|-+.|+-..|++.+-+--.. +.-++.|..-|-..|....-.++|...
T Consensus 571 led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 5677777777754432 24557889999999999999999999988654332 455677777777888888889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhC
Q 003768 445 EEHMLEHGVYPEEPELEALLRVSV-EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~LI~~~~-~~G~~~~A~~ll~~M~~~ 486 (796)
|+...- +.|+..-|..||..|. +.|++.+|++++....++
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 987543 5699999999998874 679999999999998876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.035 Score=60.44 Aligned_cols=281 Identities=11% Similarity=0.006 Sum_probs=176.1
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.|+...|+++..+-.+.+ ..|- ..|-.-..+.-+.||.+.|-.++.+..+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~~------e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG------EQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcC------cchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 478889999988863332 3344 7788888889999999999999999987644556666666666666
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty 322 (796)
..|+.+.|..-.+-+ .+|... +...-.....+ |.+.|++.....++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~pr----~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTPR----HPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCcC----ChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 557777777666411 123222 55667888888 99999999999999999999875554222
Q ss_pred ccchhhhHH-hhhhcC-CCCc----ccccccccccccch------hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 323 LNSQLLDGR-SNLERG-PDDQ----SRKKDWSIDNQDAD------EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 323 ~~g~~~~A~-~l~~~m-~pd~----~ty~~~~~~~~~~~------n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
- --..|+ .++++. .++. .+| |.-.++... .+++.-+.++|+.++|.++.++-.+++..|...+
T Consensus 226 ~--le~~a~~glL~q~~~~~~~~gL~~~--W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~- 300 (400)
T COG3071 226 R--LEQQAWEGLLQQARDDNGSEGLKTW--WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR- 300 (400)
T ss_pred H--HHHHHHHHHHHHHhccccchHHHHH--HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-
Confidence 1 000000 011111 0000 000 000000000 3466667778888888888877777766555111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~-~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~ 469 (796)
.-.+.+-++.+.-.+..+.-. ..+-.| -.+.+|=.-|.+++.+.+|.+.|+.-.+. .|+..+|+.+-+++.+
T Consensus 301 ---~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~ 373 (400)
T COG3071 301 ---LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQ 373 (400)
T ss_pred ---HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHH
Confidence 123344555555555544432 345555 33444555566788888888888865554 4888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 003768 470 AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 470 ~G~~~~A~~ll~~M~~~ 486 (796)
.|+..+|.++.++-...
T Consensus 374 ~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 374 LGEPEEAEQVRREALLL 390 (400)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 88888888877765543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.1 Score=60.68 Aligned_cols=277 Identities=13% Similarity=0.095 Sum_probs=173.9
Q ss_pred hhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 157 ~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd-~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
++-+.+.++.++|++.+++-.. ..+| +..+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..|..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 3456688999999999977522 1223 2455566678899999999999999999875 666666655555
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCCh-HHHHHHHHHHHH
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN 312 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~ 312 (796)
|..... .-.....+....+++ ++... .+ +.+-.-.|. +.....+ ..+...+..+..
T Consensus 81 ~~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 81 ALGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred HHhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHh
Confidence 541110 001224556666664 33332 12 111111111 2222223 344566677788
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh----CC------
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL----DE------ 382 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~----~g------ 382 (796)
+|+++ .+ +.|-.-|......+-..+++..+.. .+
T Consensus 140 KgvPs-lF-----------------------------------~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 140 KGVPS-LF-----------------------------------SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred cCCch-HH-----------------------------------HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 88643 21 3344444444444444555554432 11
Q ss_pred ----CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003768 383 ----VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455 (796)
Q Consensus 383 ----i~pd~~--ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p 455 (796)
-.|... ++.-|...|-..|+.++|++.+++..+. .|. +.-|..--..|-+.|++.+|.+.+++...... -
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~ 260 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-A 260 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-h
Confidence 124443 4456677788999999999999987766 466 45666666778899999999999999877541 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh
Q 003768 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (796)
Q Consensus 456 d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~ 503 (796)
|-..-+-....+.++|++++|.+++....+...++..+...+=..||.
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 555666778888999999999999999988744344445555555554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=59.56 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHHcC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd~~ty~~LI~~~~~~G--------~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
...|.-|...+++.....+|..++..|+ .|.+.+|+.+|.+.++.. .+-.++.++++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555555666666666666666666 666666666666666542 2344567777777777788888887
Q ss_pred HHHHHHHh
Q 003768 462 ALLRVSVE 469 (796)
Q Consensus 462 ~LI~~~~~ 469 (796)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0072 Score=69.47 Aligned_cols=240 Identities=14% Similarity=0.070 Sum_probs=158.6
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHH----HH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQY----HY 229 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~-g~~Pd~~t-yn~lI~a~~k~G~~~~A~~lf~~M~~---~Gi~pd~~----ty 229 (796)
.....++.+.|..+|+.-.+.- .+.. -..|.+.+ .+.+=..|...+++++|..+|.++.. ...-++.. ++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l-~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRIL-EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5667789999999999865431 1111 23444432 23345678889999999999999983 23334433 34
Q ss_pred HHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh--hcc-CCCC--Ccch-hhhcccCccccccccccCChHHH
Q 003768 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL--GDS-RDMD--NNGQ-LDYGSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em--~~~-~gv~--d~~t-yn~LI~~~~~~~~~~~~g~~~~A 303 (796)
+.|=.+|+ +.|++++|...++ +-| ..+ .+.. .+.+ ++.+... ++..+++++|
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e------~Al~I~~~~~~~~~~~v~~~l~~~~~~------~~~~~~~Eea 344 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE------RALEIYEKLLGASHPEVAAQLSELAAI------LQSMNEYEEA 344 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH------HHHHHHHHhhccChHHHHHHHHHHHHH------HHHhcchhHH
Confidence 44444566 8899888888775 222 111 1222 3333 5666666 8899999999
Q ss_pred HHHHHHHHHcCCCCCcceeccchhhhHHhhhh-cCCCCc-ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE-RGPDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~-~m~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
..++..-.+. +. .+.++. .+ ...++-|=..|-+.|++++|.++|++....
T Consensus 345 ~~l~q~al~i--------------------~~~~~g~~~~~~--------a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 345 KKLLQKALKI--------------------YLDAPGEDNVNL--------AKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHH--------------------HHhhccccchHH--------HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9988754332 11 111111 00 011277888899999999999999977642
Q ss_pred -----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCC-cccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 382 -----E-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMK----SLGI-NPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 382 -----g-i~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~----~~gi-~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
| ..+. -..++-|-..|.+.+..++|.++|.+-. ..|. .|+ ..+|..|...|.+.|+.++|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1222 4577889999999999999999998754 2332 123 468888999999999999999998876
Q ss_pred H
Q 003768 449 L 449 (796)
Q Consensus 449 ~ 449 (796)
.
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 5
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=72.70 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=92.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
.++++.+....+++++..++...+.. ....-..|..++|+.|.+.|..+.|..+++.=...|+-||..|||.||+.+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 66777777777888888888887764 2223334556899999999999999999988888899999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
+.|++..|.+|..+|...+...+..|+.--+.+|.+.
T Consensus 150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999988888888777888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=58.43 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=68.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g--------~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
...|..+...+++.....+|+.++..|+ .|++.+|+.++++.++.. ++-+++.++..|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345666667999999999999999999 899999999999998743 2346788999999999999999999
Q ss_pred HHHHHHHHc
Q 003768 427 PALSVFCNN 435 (796)
Q Consensus 427 ~LI~~~~~~ 435 (796)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988753
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0053 Score=68.98 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=108.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 374 lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
++..|.+ .+.+.+.+.+..+++.+....+++++..++...... ...-...|..++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 455678889999999999999999999999888765 33333456679999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhc
Q 003768 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (796)
Q Consensus 449 ~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (796)
...|+-||..+||.||+.+.+.|++..|.++..+|......-.|.|+.. +..+++.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988766666777766 5555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=63.10 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC----------------ChHHHH
Q 003768 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G----------------~~~~A~ 442 (796)
..|..+|..+|+.|.+ .|..+-....++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4578899999999885 4788888899999999999999999999999876632 345689
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
+|+++|+..|+.||..|+..|++.+.+.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999999887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.19 Score=53.64 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=157.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-------ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~-------lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (796)
.+...|..+.|.++-..+.+ +|| .|++- |=.-|-+.|-+|.|..+|..+.+.|.- -....--
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~---------spd-lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~Alqq 146 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLE---------SPD-LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQ 146 (389)
T ss_pred HHHhcchHHHHHHHHHHHhc---------CCC-CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHH
Confidence 45678899999999998842 344 34433 445577789999999999999976522 1234555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCcccc----ccccccCChHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDK----LESNSSYRFDDLDSTF 307 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~----~~~~~~g~~~~A~~lf 307 (796)
|+..|- ....+++|+++-. ++... +--+|+.-|.- ++ ..+....+++.|..++
T Consensus 147 Ll~IYQ----------~treW~KAId~A~-------~L~k~----~~q~~~~eIAq--fyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 147 LLNIYQ----------ATREWEKAIDVAE-------RLVKL----GGQTYRVEIAQ--FYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHH----------HhhHHHHHHHHHH-------HHHHc----CCccchhHHHH--HHHHHHHHHhhhhhHHHHHHHH
Confidence 677776 6677788877763 33332 11223333322 00 0033445566666666
Q ss_pred HHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH-HHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 308 ~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI-~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
.+-.... |+.+-- ++++ +-+...|+++.|.+.++...+.+..--
T Consensus 204 ~kAlqa~--~~cvRA---------------------------------si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 204 KKALQAD--KKCVRA---------------------------------SIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHhhC--ccceeh---------------------------------hhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 5544431 222221 3333 345668899999999999988875555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+...|..+|.+.|+.++....+..+.+....++. -..+-.--....-.+.|...+.+-..+ .|+..-+..||+.
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 567888999999999999999999888766333332 222222112223345555555444443 4999999999988
Q ss_pred HHh---cCChhHHHHHHHHHHhC
Q 003768 467 SVE---AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~---~G~~~~A~~ll~~M~~~ 486 (796)
-.. .|...+-..+++.|...
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhccccccchhhhHHHHHHHHHH
Confidence 643 33455566666777655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.24 Score=59.12 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=158.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
..+.+....|.-.|.+-++.... +.-.+=-=+..|-+.|+...|..-|.+|....-+.|..-+-.+|...+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~-------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS-------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 33444555566666655432211 11222223456677788888888888877553222333333444433311
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
+-..+..+.|.+.+. .-.....+....-.+|+++.. |.+...++.|.....++..+...+|.
T Consensus 290 ------~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 290 ------FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred ------HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCCh
Confidence 113445577777774 112211111134447888888 99999999999999988884444443
Q ss_pred cee----------------------c--------------cchhhhHHhhhhcC-----CCCcccccccccccccchhhH
Q 003768 320 HMK----------------------L--------------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 320 ~ty----------------------~--------------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~l 358 (796)
.-+ . .+...+++.-|..- ..++--| --+
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~-----------~d~ 420 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLY-----------LDL 420 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHH-----------HHH
Confidence 222 1 11111111111110 0111112 445
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~ 437 (796)
.++|...|.+.+|+.+|..+...-.--+...|--+.++|-..|..++|.+.++..... .|+. -.--+|-.-+-+.|+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCC
Confidence 6677777778888888877777655556677777777777778888888777776544 2331 222233444556777
Q ss_pred hHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 438 VDKACSVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 438 ~~~A~~l~~~M~--------~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++|.+.+..|. ..+..|+....--..+.+...|+.++-..+-..|..
T Consensus 499 ~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 499 HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 778877777753 223445555555555666667776654444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.43 Score=53.17 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=173.7
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHcccc
Q 003768 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDM-CSKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAV 241 (796)
Q Consensus 165 ~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a-~~k~G~~~~A~~lf~~M~~~G-i~-pd~~tyn~LL~a~~~~~~ 241 (796)
..++++.=.+.....|.... --+-+.+.+ .-...|+++|+.+|++..+.. .+ -|..+|+-+|..--.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~-------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--- 311 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNS-------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--- 311 (559)
T ss_pred HHHHHHHHHHHHHhccCCcc-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---
Confidence 44555555555544443221 222333332 334578999999999998763 11 367888888877652
Q ss_pred CCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
++.-.--|..++.+ +.. -..|+.++-+- |.-.++-++|...|+.-.+.+ |..
T Consensus 312 ------~skLs~LA~~v~~i-----dKy-------R~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p~~-- 363 (559)
T KOG1155|consen 312 ------KSKLSYLAQNVSNI-----DKY-------RPETCCIIANY------YSLRSEHEKAVMYFKRALKLN--PKY-- 363 (559)
T ss_pred ------hHHHHHHHHHHHHh-----ccC-------CccceeeehhH------HHHHHhHHHHHHHHHHHHhcC--cch--
Confidence 12222244445420 000 22344444455 666677788888887766653 111
Q ss_pred eccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 322 y~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
...| +.|=+.|........|.+-++...+-. +.|-..|=.|=.+|.-.+
T Consensus 364 -------------------~~aW-----------TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 364 -------------------LSAW-----------TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred -------------------hHHH-----------HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 1223 777788999999999999999887754 568889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
...-|+-.|++-... .+-|.+.|.+|=.+|.+.+++++|...|......|= .+...|..|-+.|-+.++.++|...|.
T Consensus 413 Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999886654 234689999999999999999999999999887652 356888999999999999999999888
Q ss_pred HHHh
Q 003768 482 KLRT 485 (796)
Q Consensus 482 ~M~~ 485 (796)
+-.+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 7655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.13 Score=59.55 Aligned_cols=240 Identities=13% Similarity=0.043 Sum_probs=158.0
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
+....++|.++|+....... -..-+...|.++|--+-+.=.+ --|..+.+.++ -.+.||-++=++|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p----~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEP----YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDP-----NSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhhcc----ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhh---
Confidence 44567789999999843221 1223457888887554332111 12333333333 34588888888888
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
-.++.+.|+..|. +.. -+.+.++|..-+-| .++.....+|.|..-|+.- +..|.-
T Consensus 433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlG----hE~~~~ee~d~a~~~fr~A----l~~~~r 487 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLG----HESIATEEFDKAMKSFRKA----LGVDPR 487 (638)
T ss_pred -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcC----ChhhhhHHHHhHHHHHHhh----hcCCch
Confidence 6678888888885 111 12233444333333 3478888888888888644 445666
Q ss_pred eec-----------cchhhhHHhhhhcC---CC-CcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 321 MKL-----------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 321 ty~-----------~g~~~~A~~l~~~m---~p-d~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
.|+ .++.+.|+-.|..- .| +.+.- ..+-..+-+.|+.++|+++|++..... +-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~-----------~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL-----------CHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-----------hhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 777 77888888877775 33 33333 445566777899999999999887654 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
|...---.+..+...++.++|+..++++++. .|+. ..|..+-..|-+.|+.+.|..-|.-|.+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4444444566777889999999999999875 5664 455556678888999999999888777643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.028 Score=60.65 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=95.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
...|..|.+.++++.|.+.|+.|.+.. .| .+.+-|..++.. ...+.+|+-+|++|... ..++..+.|.+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 567899999999999999999999763 34 445555555553 34699999999998654 66788888999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~-~~A~~ll~~M~~~ 486 (796)
+...|++++|.+++.+..+.. .-|..+...+|-.....|+. +.+.+++.+++..
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999876544 23556777788887888887 6788899998876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.32 Score=56.62 Aligned_cols=244 Identities=14% Similarity=0.067 Sum_probs=157.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~-a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (796)
.+...|++++|++++..-. +.-+|...+--... .+. +.|+.++|..++ +++.+. +-.|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y-------~~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIY-------RELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHH-------HHHHHH-CCCcH
Confidence 4578899999999997643 34556665554444 444 889999999999 466654 33344
Q ss_pred chhhhcccCccccccccc-----cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccccc
Q 003768 279 GQLDYGSSPMIDKLESNS-----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~-----~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~ 353 (796)
.-|..+..+ .+- ....+....+++++...- |-....
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~------------------------------- 113 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP------------------------------- 113 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccch-------------------------------
Confidence 447777666 422 225667778888776653 222111
Q ss_pred chhhHHHHHHhccCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C----------C
Q 003768 354 ADEIRLSEDAKKYAF-QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G----------I 418 (796)
Q Consensus 354 ~~n~lI~~~~k~g~~-~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g----------i 418 (796)
--+.-.+.....+ ..+...+..+..+||+ .+|+.|-..|......+-..+++..+... + -
T Consensus 114 --~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~ 188 (517)
T PF12569_consen 114 --RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKE 188 (517)
T ss_pred --hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 0010011111122 3455666777888864 46777777777666666666777666533 1 1
Q ss_pred CCCcc--cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 419 NPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 419 ~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
.|... +|.-+-..|-..|+.++|++..++-+++- |+ +..|..--+.|-+.|++++|.+.++.-+.. .....-.
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyi 264 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYI 264 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHH
Confidence 23332 44555667788999999999999988864 76 556777888899999999999999999887 3333333
Q ss_pred HH--HHHHHhchHHHHhc
Q 003768 496 DV--IAKWFNSKEAARLG 511 (796)
Q Consensus 496 ~~--I~~~~~~~~~~~a~ 511 (796)
+. ++-+++.+...+|.
T Consensus 265 NsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 33 77777777665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=61.90 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=96.8
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
+|+..+...++++.|.++|+++.+.. |++. ..|++.+...++-.+|.+++++..+. .+-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34445555789999999999999886 6644 45888888899999999999988754 1123333333445677899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+.|.++.+.+.+.. |+.. +|..|..+|.+.|+++.|+..++.|.-.
T Consensus 249 ~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999998854 7665 9999999999999999999999987644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.02 Score=61.68 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 188 RSEQFQLRVELDMCSKR-GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~-G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
.|.......+ ..|.+. .+-+.++.-+.+.......++-.++ .++.|.. +...|++++|++++.
T Consensus 63 ~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A~i--------~~~~~~~~~AL~~l~------ 126 (290)
T PF04733_consen 63 SPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAATI--------LFHEGDYEEALKLLH------ 126 (290)
T ss_dssp SCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHHHH--------HCCCCHHHHHHCCCT------
T ss_pred ChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHHHH--------HHHcCCHHHHHHHHH------
Confidence 5564555444 444444 4444555544444333333222222 3444443 127899999998884
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
+..+.-..-..|.. +.+.+++|.|.+.++.|.+.. .|.+-. ++
T Consensus 127 -------~~~~lE~~al~Vqi------~L~~~R~dlA~k~l~~~~~~~--eD~~l~---qL------------------- 169 (290)
T PF04733_consen 127 -------KGGSLELLALAVQI------LLKMNRPDLAEKELKNMQQID--EDSILT---QL------------------- 169 (290)
T ss_dssp -------TTTCHHHHHHHHHH------HHHTT-HHHHHHHHHHHHCCS--CCHHHH---HH-------------------
T ss_pred -------ccCcccHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CcHHHH---HH-------------------
Confidence 11233334456667 899999999999999998653 232222 01
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
..++|+.+.-...+++|+.+|++|.+. ..++..+.|.+..++...|++++|.+++.+.....- -|..+..
T Consensus 170 --------a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~La 239 (290)
T PF04733_consen 170 --------AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLA 239 (290)
T ss_dssp --------HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHH
T ss_pred --------HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHH
Confidence 134444443345799999999998775 568899999999999999999999999998654321 2334555
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDV-DKACSVEEHMLEH 451 (796)
Q Consensus 427 ~LI~~~~~~G~~-~~A~~l~~~M~~~ 451 (796)
.+|......|+- +.+.+.+.++...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 567777777877 6788888888864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.3 Score=52.88 Aligned_cols=217 Identities=11% Similarity=-0.049 Sum_probs=137.8
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcch
Q 003768 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (796)
Q Consensus 204 ~G~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (796)
.+..+.++.-+.++... .+.|+. ..|..+=..+. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 34566778888887743 233332 23333333444 6788999988884 33221 1125566
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
|+.+-.. +...|++++|...|+...+. .|+. .+| .-+-
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~~~a~---------------------------------~~lg 139 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTYNYAY---------------------------------LNRG 139 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHHH---------------------------------HHHH
Confidence 8887777 89999999999999888764 3442 122 4455
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..+...|++++|.+.|+...+.. |+..........+...++.++|...|++.... ..|+...+ .+ .....|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCC
Confidence 66778899999999999988753 44332223333345678899999999775533 23433222 22 223356665
Q ss_pred HHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~---gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+ +.+..+.+. .+ .| ....|..|-..+.+.|+.++|...|++....
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 54 355555432 11 11 2357888888999999999999999998876
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.38 Score=57.95 Aligned_cols=303 Identities=13% Similarity=0.065 Sum_probs=192.3
Q ss_pred HhhhcCCcchHHHHHHH----HHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH----
Q 003768 159 KMEQRTNDSGQYKVRGI----TDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY---- 227 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~----M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~---Gi~pd~~---- 227 (796)
.+-..++...++.++.. |...+. . +.....|.+=...-..|++..|...|...... -..+|..
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~-----~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGK-----Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCC-----C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 44555566555666554 322332 2 33378888888999999999999999998854 2334442
Q ss_pred -HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCcccccccccc-------CC
Q 003768 228 -HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YR 299 (796)
Q Consensus 228 -tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~-------g~ 299 (796)
|---.|..|.. ..++.+.|.+++. +.... |-.-|++ |.+. +.
T Consensus 496 lt~~YNlarl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 496 LTLKYNLARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNN 545 (1018)
T ss_pred hHHHHHHHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccC
Confidence 12222333332 3456777878774 22211 2333444 4444 44
Q ss_pred hHHHHHHHHHHHH-cCCCCCcceec------cchhhhHHhhhhcC--CCCcc--cccccccccccchhhHHHHHHh----
Q 003768 300 FDDLDSTFNEKEN-LGQFSNGHMKL------NSQLLDGRSNLERG--PDDQS--RKKDWSIDNQDADEIRLSEDAK---- 364 (796)
Q Consensus 300 ~~~A~~lf~eM~~-~Gi~Pd~~ty~------~g~~~~A~~l~~~m--~pd~~--ty~~~~~~~~~~~n~lI~~~~k---- 364 (796)
..+|..++.+... ..--|++.++- ...+.-|..-|... .++.. +|-..++ .|..|..+.+
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL-----GN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL-----GNVYIQALHNPSRN 620 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh-----hHHHHHHhcccccC
Confidence 5667766666544 34667777773 22233333333333 22222 2311111 1444544433
Q ss_pred ----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 365 ----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 365 ----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|--+-++|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 345788999998877654 45777778888889999999999999999988744 244566678899999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhchH
Q 003768 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506 (796)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~ 506 (796)
|.++|+...+. .-.-+......|-.++-++|.+.+|.+.+..-+.. .|+.. .+++....++...
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHH
Confidence 99999876554 55567888899999999999999999988877765 55444 3555444444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.35 Score=53.24 Aligned_cols=230 Identities=11% Similarity=-0.034 Sum_probs=134.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-C
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-N 277 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d 277 (796)
..+...|++++|.+++++..... +-|...++. ...+...+ ...|..+.+...+. . ... ..+ .
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~ 113 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDY 113 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCc
Confidence 35567899999999999988652 333334432 11111100 03455566666663 1 000 111 1
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchh
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n 356 (796)
......+-.. +...|++++|...+++..+.. |+. ..+ .
T Consensus 114 ~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~---------------------------------~ 152 (355)
T cd05804 114 WYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV---------------------------------H 152 (355)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH---------------------------------H
Confidence 1222233334 778899999999999888763 332 222 5
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcccH-H--HHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd~~ty-~--~LI 429 (796)
.+-..|...|++++|...+++.....- .|+. ..|-.+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 677788899999999999998776432 2333 3466788899999999999999999754321 1112111 1 233
Q ss_pred HHHHHcCChHHHHHH--HHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSV--EEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l--~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+-..|....+.+. ...............+ .....++...|+.++|..++..++..
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334445544444333 2221111111111222 25666678889999999999998775
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.37 Score=52.79 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=147.9
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVL 232 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~-------~tyn~L 232 (796)
....++...|+.=.+...+.+.. +....+....+|.+.|++.....+...|.+.|+--|+ .+|+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 34455666677777777554422 2278999999999999999999999999999987665 478888
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
|+-+.... ..+.-..-+. ..+++.+. +.-.-.+++.- +.+.|+-++|.++..+-.+
T Consensus 236 L~q~~~~~----------~~~gL~~~W~---~~pr~lr~-----~p~l~~~~a~~------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 236 LQQARDDN----------GSEGLKTWWK---NQPRKLRN-----DPELVVAYAER------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHhccc----------cchHHHHHHH---hccHHhhc-----ChhHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 88777322 1111111111 00011111 11112233333 8888999999999999888
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH-HhCCCCCCHHHHH
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM-CLDEVPMNEASLT 391 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M-~~~gi~pd~~ty~ 391 (796)
++..|...++ -++.+-++.+.=.+..++- +..+-.| -.+.
T Consensus 292 ~~~D~~L~~~-------------------------------------~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~ 332 (400)
T COG3071 292 RQWDPRLCRL-------------------------------------IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLS 332 (400)
T ss_pred hccChhHHHH-------------------------------------HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHH
Confidence 8776665444 2333444444444444333 3344444 6788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+|=..|.+.+.+.+|...|+.-. ...|+..+|+-+-++|.+.|+..+|.+++++-...
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888999999999999998544 45789999999999999999999999998876543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=58.70 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=75.4
Q ss_pred hhHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHH
Q 003768 356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMK 414 (796)
Q Consensus 356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----------------~~~~A~~l~~~M~ 414 (796)
..+|+.|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+.. +.+-|.+++++|.
T Consensus 51 ~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 51 LEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME 130 (228)
T ss_pred HHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH
Confidence 556666665 4678888889999999999999999999999987522 3467999999999
Q ss_pred HCCCCCCcccHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 003768 415 SLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHML 449 (796)
Q Consensus 415 ~~gi~Pd~~ty~~LI~~~~~~G~~-~~A~~l~~~M~ 449 (796)
..|+.||..|+..||..|.+.+.. .+.+++.--|.
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999988753 33444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.094 Score=57.62 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=96.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-H
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-N 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~-~ 434 (796)
+-|-+-|-+.|+-..|++.+-+-- +-++.|..|...|..-|....-+++|...|+.. .=+.|+..-|-.+|..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHh
Confidence 556778889999999988765533 235668888888998999999999999999864 347899999999997655 6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
.|+..+|++++..... .+.-|...+.-|++.+...|. .++.++-+++.
T Consensus 673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 7999999999999876 356688888888888877774 34444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.3 Score=53.25 Aligned_cols=281 Identities=10% Similarity=0.044 Sum_probs=159.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~ 237 (796)
...+ |+.++|.+++.|.+.+-. .+...|-+|=..|-..|+..+|+..+ |....+.|+ ..-|-.+=....
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHH
Confidence 4444 999999999999976532 23378999999999999999987765 444444444 344444444434
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
+.|.+++|.-.|. +-.... -+|. -.+. ....-|-+.|....|..-|.+|...-- |
T Consensus 219 ----------~~~~i~qA~~cy~------rAI~~~--p~n~---~~~~---ers~L~~~~G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 219 ----------QLGNINQARYCYS------RAIQAN--PSNW---ELIY---ERSSLYQKTGDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred ----------hcccHHHHHHHHH------HHHhcC--Ccch---HHHH---HHHHHHHHhChHHHHHHHHHHHHhhCC-c
Confidence 6677888877774 111111 0011 1000 011226677888888888877766521 1
Q ss_pred Ccceec-------------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 318 NGHMKL-------------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 318 d~~ty~-------------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
...-.. .+..+.|...++.. ..+.++ ..+.|+++..|.+..+++.|......+...
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~--------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS--------LEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc--------ccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 111111 33335555555554 122222 244488888888888888888877777661
Q ss_pred CCC---------------------------CC------------------------------------HHHHHHHHHHHH
Q 003768 382 EVP---------------------------MN------------------------------------EASLTAVGRMAM 398 (796)
Q Consensus 382 gi~---------------------------pd------------------------------------~~ty~~LI~~~~ 398 (796)
... ++ +-.|.-+.++|.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 111 11 122344455566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~ 477 (796)
..|++.+|..+|..+...-..-+...|-.+-.+|-..|..+.|.+.|+..+... |+- ..-.+|-..+-+.|+.++|.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHH
Confidence 666666666666666554333344555555566666666666666666655421 321 22223334445566666666
Q ss_pred HHHHHHH
Q 003768 478 YLLHKLR 484 (796)
Q Consensus 478 ~ll~~M~ 484 (796)
+.+..|.
T Consensus 504 EtL~~~~ 510 (895)
T KOG2076|consen 504 ETLEQII 510 (895)
T ss_pred HHHhccc
Confidence 6666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.77 Score=47.01 Aligned_cols=195 Identities=14% Similarity=-0.004 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv 275 (796)
-|=-+|-+.|+...|..-+++..+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+....+-
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~p~~ 102 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLAPNN 102 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcCCCc
Confidence 34458999999999999999999764 223456777777777 7788888888884 222221111
Q ss_pred CCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 276 DNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 276 ~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
.|+.- |.+. +|..|++++|...|++-... |+-.+- ..+|
T Consensus 103 GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~------------------s~t~---------- 142 (250)
T COG3063 103 GDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP------------------SDTL---------- 142 (250)
T ss_pred cchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc------------------chhh----------
Confidence 12221 3333 66666777777666665544 111111 0001
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.-+.-+..+.|+.+.|.+.|+.-.+.. +-...+.-.+.+...+.|+.-.|...++.....+. +...+.-..|..--+
T Consensus 143 -eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~ 219 (250)
T COG3063 143 -ENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKR 219 (250)
T ss_pred -hhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHH
Confidence 112222334566666666666555432 11223444555555566666666666655544433 555555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 003768 435 NGDVDKACSVEEHMLE 450 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~ 450 (796)
.|+.+.|.+.=..+..
T Consensus 220 ~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 220 LGDRAAAQRYQAQLQR 235 (250)
T ss_pred hccHHHHHHHHHHHHH
Confidence 5665555554444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.29 Score=52.18 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=164.7
Q ss_pred cCCCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHH
Q 003768 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (796)
Q Consensus 179 ~g~~~~~g~~Pd~~ty-n~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~ 257 (796)
.+.....+..-| .=| +-|=.+|-+.|.+.+|.+.|..-... .|-+.||-.|-++|. +..+.+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334434444 334 44557889999999999999988766 355678888888898 6778889999
Q ss_pred HHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcC
Q 003768 258 TFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (796)
Q Consensus 258 vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m 337 (796)
+|. +-.+ .++-.|||-.-+.- .+-..++.++|.+++++..+.. |+
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~------------------- 322 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PI------------------- 322 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cc-------------------
Confidence 984 2111 12223443221111 1334455666666666654431 11
Q ss_pred CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 338 ~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
++-.. .++-.+|.-.++.+-|+..+..+.+-|+. +...|+.+--+|.-.+.+|.++--|......-
T Consensus 323 --nvEai-----------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 323 --NVEAI-----------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred --cceee-----------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 11111 55667788889999999999999999965 45567777777778899999999998877654
Q ss_pred CCCCcc--cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 418 INPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 418 i~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-.|+.. .|-.|=......||+..|.+.|.-...+. .-+...||.|--.-.+.|++++|..+++.-.+.
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 444432 23334444556799999999998877654 234567888877778999999999999877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.52 Score=50.98 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=144.0
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 165 ~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
..+.+..-+.++..... ..|+ ...|..+=..|.+.|+.++|...|++..+.. +-+...|+.+=..+.
T Consensus 41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----- 109 (296)
T PRK11189 41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----- 109 (296)
T ss_pred HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence 34456666666643221 1222 2345556667889999999999999998753 235678888877887
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty 322 (796)
..|++++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~--P~~~~~ 168 (296)
T PRK11189 110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQDD--PNDPYR 168 (296)
T ss_pred -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 8899999999995 22221 11144556666666 788899999999998877652 332111
Q ss_pred ccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (796)
Q Consensus 323 ~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~ 402 (796)
......+...++.++|.+.|.+..... .|+...+ .+ .....|+
T Consensus 169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~ 211 (296)
T PRK11189 169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGK 211 (296)
T ss_pred ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccC
Confidence 222222345678999999997755432 3333222 22 2334566
Q ss_pred hHHHHHHHHHHHHC-CC----CC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 403 GDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 403 ~~~A~~l~~~M~~~-gi----~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
.+++ +.++.+.+. .. .| ....|.-+=..+.+.|+.++|...|+...+.+ .||-+.+..
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 6554 355555432 11 11 12467778888999999999999999988765 346666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.24 Score=51.21 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=110.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+-+.|++++|...|++..... |+.... .++ + ..+-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~-----~~a-------------~-----------~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA-----EQA-------------Q-----------LDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH-----HHH-------------H-----------HHHHHHHHhcCCHHHHHH
Confidence 778899999999998886642 322110 001 1 445567788899999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCcc-cHH----------------
Q 003768 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (796)
Q Consensus 374 lf~~M~~~gi~pd~~--ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~gi~Pd~~-ty~---------------- 426 (796)
.|+++.+..-..... ++..+-.++... |+.++|.+.|+.+.+. .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998753211121 343344444443 6788999999988765 34432 111
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 -~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..+.+.|+.++|...++...+.. -......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999988753 1223567889999999999999999999988776
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.21 Score=52.49 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=136.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS--KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~--k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
+-+.....+|++|...|. ..|+...=..-+.+.. ..+|+..+..+.++....| +-..+|+.-|
T Consensus 88 LY~A~i~ADALrV~~~~~---------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------~Ad~~in~gC 152 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLL---------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------EADGQINLGC 152 (459)
T ss_pred HHHhcccHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------ccchhccchh
Confidence 335556667777777761 1122222222222222 3456666666666655333 1112232222
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..| +.|+.+.|.+-|. +...-+|..+.+.||.-+.. | +.++.+.|+++..|+.++|++-
T Consensus 153 ------lly-kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 153 ------LLY-KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred ------eee-ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhc
Confidence 123 8999999999994 44444477788889987765 4 6788999999999999999652
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRM 396 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~ 396 (796)
- .-++-|...+...+ +..-|..+.+.= .-..+.|.-..-+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.
T Consensus 212 H-PElgIGm~tegiDv--rsvgNt~~lh~S--al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 212 H-PELGIGMTTEGIDV--RSVGNTLVLHQS--ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred C-CccCccceeccCch--hcccchHHHHHH--HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 1 11211111111100 000000000000 00000022233456777888888888888643 334677777665433
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
-+ .+++.+...-+.-+...+-. -..||..++--||++.-++.|-.++.+-
T Consensus 287 n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 287 NM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 22 34455555555555544322 3468888999999999999999888764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.96 Score=49.76 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHh
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSVE 469 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv-~pd~--~ty~~LI~~~~~ 469 (796)
+...+...|++++|...+++..+.. ..+...+..+-..|...|+.++|...++......- .|+. ..|..+-..+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3334444555555555555444331 11222333333444444555555555444433210 1111 122334444445
Q ss_pred cCChhHHHHHHHHH
Q 003768 470 AGKGDRVYYLLHKL 483 (796)
Q Consensus 470 ~G~~~~A~~ll~~M 483 (796)
.|+.++|..++++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.066 Score=57.34 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~ 434 (796)
-++-+.+.-..++++++-.+...+.--..-|..-|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 566667777778888888888887765555666666 77888999999999999976654433 3566776655 57788
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELE-ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~-~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
++..+.|++++-.|... -+..+.- .+-+.|-+++.+--|-+.|+++... .|+|+-|+-
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 99999998887665432 2233332 3335567888888888888888877 788875543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.088 Score=56.53 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=98.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
..+|...-+.+.++.|..+|.+.++.+ +...+....++|.- ...++.+.|..+|+...+. +.-+..-|..-|..+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 778888888999999999999998654 33444444444433 3357788899999998876 55577778889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~----~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.+.|..+|+..... + |.. ..|...|+.=.+.|+++.+..+..++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999998876 3 443 48999999999999999999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.18 Score=47.12 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=47.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...+.+.|++++|.+.|+.....+ +.+...|..+...+.+.|++++|..+++...+.+ ..+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344555556666666665555433 2344555555555556666666666665544432 2233344444445555556
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.3 Score=45.56 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+......+...+...|+.++|...|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556777888889999999999999987753 2356777778888889999999999999887764 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|...|+.++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999998876
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.36 Score=56.52 Aligned_cols=224 Identities=9% Similarity=-0.013 Sum_probs=150.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.|-..+|..+|+.+ ..|--+|..|+..|+..+|..+..+-.+ -+||..-|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 566778888999999999 8999999999999999999988888776 4688888888887776
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~P 317 (796)
.---+++|.+++. ..+.+. -..++-+ ....+++.++.+.|+.-.+.. +.+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3345678888875 111110 0001111 233567777777776543331 111
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRM 396 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~ 396 (796)
+ +| =..=.+..+.++++.|.+-|..-..- .| +...||++-.+
T Consensus 520 ~------------------------~w-----------f~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G------------------------TW-----------FGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTA 562 (777)
T ss_pred h------------------------HH-----------HhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHH
Confidence 1 11 00111233556788888888776542 34 45689999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPEEPELEALLRVS 467 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-v~pd~~ty~~LI~~~ 467 (796)
|.+.++-.+|+..+.+-.+.+ .-+...|.--+.-..+.|.+++|.+.+..|.... -.-|......++...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999999999999988877 4455566666677788999999999988876531 112444444444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.14 Score=42.60 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=39.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555554443321 1111333334444444455555555554444332 1122344444445555555
Q ss_pred hhHHHHHHHHHH
Q 003768 473 GDRVYYLLHKLR 484 (796)
Q Consensus 473 ~~~A~~ll~~M~ 484 (796)
.++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.62 Score=47.65 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=110.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
+--+|...|+...|.+-+++..+.. +-+.-+|..+...|-+.|+.+.|.+-|+.-.+. .|+ -.+.|-.=..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4458999999999999999988864 345679999999999999999999999987654 343 233333444578999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhchHH
Q 003768 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~~ 507 (796)
..++|...|+.-...--.| -..+|..+--+..+.|+.+.|...|.+-.+......+.....-...++.+..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 9999999999988763333 3457777777778999999999999998887544444444445555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.1 Score=46.36 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g--i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.+...+.+.|+.++|...+++..+.. -......+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667888999999999999987652 1123467788999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.5 Score=47.99 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=97.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHH-HHcCC--hHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~-~~~G~--~~~ 440 (796)
.++.+++...++...... +.|...|..|-..|...|+.++|...|+...+. .| +...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777666554 668889999999999999999999999987765 34 455555555553 56677 599
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hHHHHH
Q 003768 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVI 498 (796)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p-~t~~~I 498 (796)
|.+++++..+.. | +...+..|-..+...|++++|...++++.+. .+.. +-+.+|
T Consensus 129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 999999999865 5 5567777888889999999999999999886 3333 345555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.50 E-value=5 Score=45.14 Aligned_cols=280 Identities=10% Similarity=0.050 Sum_probs=170.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
-+..++...|++||+... ...|+...|++.|+-=.+-...+.|..+|++.+-- -|++.+|---..-=-
T Consensus 151 EE~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~-- 218 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE-- 218 (677)
T ss_pred HHHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH--
Confidence 456788999999999862 25788899999999999999999999999999854 488888866555544
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
++|.+..|..+|. ...+..|-. +...+++.-.- -.+...++.|.-+|.--... -|
T Consensus 219 --------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~p 275 (677)
T KOG1915|consen 219 --------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IP 275 (677)
T ss_pred --------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cC
Confidence 7888888888774 111110000 11112222111 11122233333333222211 01
Q ss_pred Ccce---ec-----------cchhhhHHhhhhcC------CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHH
Q 003768 318 NGHM---KL-----------NSQLLDGRSNLERG------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (796)
Q Consensus 318 d~~t---y~-----------~g~~~~A~~l~~~m------~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~ 377 (796)
..-+ |. ...++++..--..+ ..|..-|.+| =-.+.---..|+.++..++|+.
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--------fdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--------FDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--------HHHHHHHHhcCCHHHHHHHHHH
Confidence 1100 00 11122222221222 3444445211 2334444456888888899988
Q ss_pred HHhCCCCCCH-------HHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH----HcCChHHHHH
Q 003768 378 MCLDEVPMNE-------ASLTAVGRMA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACS 443 (796)
Q Consensus 378 M~~~gi~pd~-------~ty~~LI~~~---~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~----~~G~~~~A~~ 443 (796)
.... ++|-. ..|--+=-+| ....|++.+.++++...+. ++-..+||.-+--.|+ ++.++..|.+
T Consensus 348 AIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 348 AIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 7754 45521 1121111111 2467888899999888773 5556788887776666 4678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++...+ |.-|-..+|-.-|..=.+.+.+|+...|+++..+-
T Consensus 426 iLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 426 ILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 887654 55688888888888888889999999999888876
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.27 Score=47.14 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=43.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+-..+...|++++|...|....... ..+...|..+-..+.+.|+.++|...|+...+.. ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544331 1233344444444555555555555555555432 1233444444445555555
Q ss_pred hhHHHHHHHHHHhC
Q 003768 473 GDRVYYLLHKLRTS 486 (796)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (796)
.++|...|+.....
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.18 Score=41.94 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=75.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.++...... ..+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 345566778899999999999988753 3344778888999999999999999999887653 23345777888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.2 Score=48.09 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=88.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------cccH--HHHHH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-------LRSY--GPALS 430 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-------~~ty--~~LI~ 430 (796)
-+..|.+++++++..|++-+++ .+--.-.||-....+...++++.|.+.|+...+. .|+ .-.+ -.+|-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence 3445677899999999998876 3445668888889999999999999999876543 222 1111 11222
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-- .+++..|..++....+.. | ....|.+|-..-.+.|++++|.++|++-..-
T Consensus 513 ~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 388999999998887743 3 4567899999999999999999999986543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.4 Score=46.65 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=95.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
....+-+.+.++..+|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|..|-.+|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Confidence 55677888999999999999999876 455 556667888999999999999999987655 55688899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
.|+..+|..-..++ |...|.++.|...+...++....-.|+
T Consensus 421 ~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 421 LGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred hCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 99998887766554 456899999999998888875444454
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.46 Score=45.55 Aligned_cols=102 Identities=8% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+...|++++|...|+...... +.+..+|..+-.++.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3456778999999999999988764 4578899999999999999999999999998753 3466777778888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
.++|...|+...+.. |+...|..+
T Consensus 108 ~~eAi~~~~~Al~~~--p~~~~~~~~ 131 (144)
T PRK15359 108 PGLAREAFQTAIKMS--YADASWSEI 131 (144)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHH
Confidence 999999999988754 776655533
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.14 Score=59.16 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=49.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-+-|+..|+++.|.++|-+- -.++--|.+|.+.|+++.|+++-++. .|-...+..|-+--.-+-+.
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhh
Confidence 44555555566666666555431 12344556666666666666654432 22233333444333334444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
|++.+|.+++-.+.. |+ .-|.+|-+.|..|.+.++..
T Consensus 838 gkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 555444444422111 22 22445555555555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.37 Score=46.12 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=87.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty~~LI~~ 431 (796)
..++..+ ..++...+.+.++.+....-.- .....=.+...+...|++++|...|+......-.|... ..-.|-..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 4455555 4788899999999998864111 11222334577888999999999999998876333322 23335667
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
+...|+.++|...++......+ ....+..+=+.|.+.|+.++|...|+.
T Consensus 95 ~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7789999999999977544333 334556677788999999999998875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=56.49 Aligned_cols=117 Identities=10% Similarity=0.113 Sum_probs=94.2
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...++++.|..+|+++.+.. |++. -.++..+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~-----------------------------------~~LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVA-----------------------------------VLLARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHH-----------------------------------HHHHHHHHhcCcHHHHHH
Confidence 566788999999999998875 4432 335666666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
++++..... +-|......-.+.|.+.++.+.|+.+.+++.+. .|+. .+|..|..+|.+.|+++.|+..++.|.-
T Consensus 222 ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 222 LLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 998888542 446777777788889999999999999998765 5665 4999999999999999999999988753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.17 Score=47.37 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
|+.++.++|-++++.|+++....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 56677788888888888887777776442 33222100 0000 1122356677777777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHHh
Q 003768 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFN 503 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~~-~~~~p~t~~~I~~~~~ 503 (796)
+|+..|++..|+++++...+.- +.++..+|..+..|+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777766542 2233336766666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.4 Score=43.17 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEAL 463 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty~~L 463 (796)
+-.+...+.+.|+.++|.+.|+.+.... |+ ...+..+-..+.+.|+.+.|...|+.+.... -......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444555555666666666666655431 22 1233335555666666666666666655432 01113344555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+.+.|+.++|...++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55556666666666666666655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.83 Score=48.22 Aligned_cols=278 Identities=10% Similarity=0.003 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
.-++++|..+.+..++..|++++..-.+.. | +....+.|=++|- ...++..|...+..+ .
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY----------~~Q~f~~AA~CYeQL-------~ 71 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYY----------RLQEFALAAECYEQL-------G 71 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHH----------HHHHHHHHHHHHHHH-------H
Confidence 456777777788888888888887766543 3 4445555555554 334455555555311 1
Q ss_pred ccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcC------C-CCCcceeccchhhhHHhhhhcCCCCcc
Q 003768 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG------Q-FSNGHMKLNSQLLDGRSNLERGPDDQS 342 (796)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G------i-~Pd~~ty~~g~~~~A~~l~~~m~pd~~ 342 (796)
. .. +-.. |..- +.-.+-+.+.+.+|+++...|.... + .-..+-|+.+++..+..++++...
T Consensus 72 q--l~-P~~~qYrlY-----~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--- 140 (459)
T KOG4340|consen 72 Q--LH-PELEQYRLY-----QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--- 140 (459)
T ss_pred h--hC-hHHHHHHHH-----HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---
Confidence 0 00 0000 0000 0001334455667777766664421 0 011233445566666666666521
Q ss_pred cccccccccccchhhHHH---HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 343 RKKDWSIDNQDADEIRLS---EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~---~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
+.+...+|+ -..+.|+.++|.+-|+...+-|---....||.-+ +..+.|+.+.|+++..++.++|++
T Consensus 141 ---------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 141 ---------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ---------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 001112222 2357899999999999887754333457888665 566789999999999999988754
Q ss_pred -------------CCcccH--------HHHHHH-------HHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003768 420 -------------PRLRSY--------GPALSV-------FCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 420 -------------Pd~~ty--------~~LI~~-------~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~ 470 (796)
||+++- +.++.+ +.+.|+.+.|.+-+-+|.-+ .-..|.+|...|--.- -.
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 343321 223333 34668999999998888643 3446777775442221 23
Q ss_pred CChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchHHHHhc
Q 003768 471 GKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLG 511 (796)
Q Consensus 471 G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~a~ 511 (796)
+++.+..+-+.-+.... +++++| .+++.-+|++.-..-|.
T Consensus 290 ~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred CCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 44444444444444441 455555 56688889886654443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.78 Score=47.70 Aligned_cols=125 Identities=11% Similarity=0.002 Sum_probs=98.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
++.+....+.|++.+|...|.+...-. ++|..+||.+--+|.+.|+.++|..-|.+..+.-. -+...+|-|--.|.-.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~ 181 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc
Confidence 446677788999999999999987653 78999999999999999999999999988776522 2334556666777888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|+.+.|..++.+-...+. -|...-..|.-+....|++++|..+...-
T Consensus 182 gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999998887663 25555667777788899999998876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2 Score=53.96 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi~pd~---~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
...|-.-|.-....++.++|.++++++... +++-.. -.|.++|+.-. -.|.-+...++|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence 377888888888888888888888888742 333222 24555555544 3454455566663
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHc-CCCCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~-Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
.... -+.....|..|..- |.+.+.+++|.++|+.|.++ |..+.+ |
T Consensus 1522 -RAcq--ycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~v------------------------W- 1567 (1710)
T KOG1070|consen 1522 -RACQ--YCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKV------------------------W- 1567 (1710)
T ss_pred -HHHH--hcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhH------------------------H-
Confidence 1111 11123337788777 99999999999999999765 312111 2
Q ss_pred ccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
...++.+.+..+-+.|.+++.+..+. .|- +-...-.+..-.+.|+.+.+..+|+..... .+-..
T Consensus 1568 ----------~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRt 1634 (1710)
T KOG1070|consen 1568 ----------IMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRT 1634 (1710)
T ss_pred ----------HHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccch
Confidence 55667777888888888888766543 232 334455556667899999999999988765 23356
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYL 479 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~--~ty~~LI~~~~~~G~~~~A~~l 479 (796)
-.|+..|.+=.++|+.+.++.+|++....++.|-- ..|..-|..=-..|+-..+..+
T Consensus 1635 DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1635 DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 78999999999999999999999999998887754 4667777776677775544433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.80 E-value=4.4 Score=47.20 Aligned_cols=285 Identities=12% Similarity=0.024 Sum_probs=166.2
Q ss_pred hhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 156 ~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
.|+.+.+.+..++|++.+...+.+ +.-....--+--+.+.+.+++++|..+|..+... .||-+-|.-.+..
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 344566777777777776655211 1111123334456788999999999999999976 4888888887777
Q ss_pred HHccccCCcccCCCCChhhHH-HHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC
Q 003768 236 CSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~-~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G 314 (796)
+.. +.-+.-++. .+|... ++..... .++--..-+. .......+.....+..+.++|
T Consensus 262 ~lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 262 ALG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcC
Confidence 661 111222333 444311 1111111 1110000111 111233455567777788888
Q ss_pred CCC---Ccceeccc--h--hhh--HHhhhhcC---------------CCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 315 QFS---NGHMKLNS--Q--LLD--GRSNLERG---------------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 315 i~P---d~~ty~~g--~--~~~--A~~l~~~m---------------~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
+.| |..+.... + +.+ +..+...+ .|....| ..-.++..|-+.|+++.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW---------t~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW---------TLYFLAQHYDKLGDYEV 389 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH---------HHHHHHHHHHHcccHHH
Confidence 654 44444311 0 111 11111111 2222333 11235677788899999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
|.+..+.-... .|+.+ -|-+=.+.+..+|++++|...+++..+... ||...-+-......+++++++|.++.....
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999887654 45543 456666889999999999999999887754 666665566777778999999999998888
Q ss_pred hCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHhC
Q 003768 450 EHGVYPEEPELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI----------~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|. +...+-+.+ .+|.+.|++.+|++=|+.+...
T Consensus 467 r~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 467 REGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 7775 333332222 2356667777777666665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.5 Score=51.86 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=144.9
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCC----CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~ 323 (796)
..+.+++|++++. +....-.+. -.-.|.++++. -..-|.-+...++|++....- |.++.
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc---d~~~V- 1532 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC---DAYTV- 1532 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---chHHH-
Confidence 5577888888884 333322332 12236666665 444455567778888776542 22221
Q ss_pred cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (796)
Q Consensus 324 ~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (796)
| ..|..-|.+.+..++|-++|+.|.++- .-....|...++.+.+..+.
T Consensus 1533 --------------------~-----------~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1533 --------------------H-----------LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred --------------------H-----------HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 2 778899999999999999999998752 24567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003768 404 DMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 404 ~~A~~l~~~M~~~gi~Pd~---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll 480 (796)
+.|..++.+..+. .|.. ....-.+..-.++|+.+.+..+|+.....- +--...|+..|+.=.++|+.+.+..+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999886654 4552 222333444557899999999999988753 124578999999999999999999999
Q ss_pred HHHHhCCCCCChh-HHHHHHHHHhc
Q 003768 481 HKLRTSVRKVSPS-TADVIAKWFNS 504 (796)
Q Consensus 481 ~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (796)
++.... ..++- +--..+.|.+.
T Consensus 1658 eRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHhc--CCChhHhHHHHHHHHHH
Confidence 999999 66665 32235555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.23 Score=51.93 Aligned_cols=102 Identities=22% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC----------------hHHHH
Q 003768 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKAC 442 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~----------------~~~A~ 442 (796)
.-|-.+|-+.+.-+.. .+.++-....++.|++.|+.-|+.+|+.||+.+=+..- -.=|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666653 35677777788888899999999999988887765432 22368
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRT 485 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~-~~A~~ll~~M~~ 485 (796)
.++++|..+||.||-.+-..||+++.+-+.. .+..+++--|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8999999999999999999999999888764 355555555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.3 Score=50.33 Aligned_cols=290 Identities=10% Similarity=-0.004 Sum_probs=163.5
Q ss_pred hcCCcchHHHHHHHHHhc---CCCCCCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDEK---GSKKSKKDRSEQFQLRVELDMCS-KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~---g~~~~~g~~Pd~~tyn~lI~a~~-k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
..+.++.|...|+.-... -..++.+-.++ +|.--.|..|. ..++...|.+.|....+.. |+-++--.=+-+.+
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA 540 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence 457788888888876443 11223322334 33333333333 3468899999999988652 33222111111122
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-CC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QF 316 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~ 316 (796)
+ ..+...+|...+. +-+......+++ ++-+=+. +-+...+..|..=|......- ..
T Consensus 541 ~---------~k~~~~ea~~~lk------~~l~~d~~np~a--rsl~G~~------~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 541 R---------DKNNLYEASLLLK------DALNIDSSNPNA--RSLLGNL------HLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred H---------hccCcHHHHHHHH------HHHhcccCCcHH--HHHHHHH------HHhhhhhcccccHHHHHHhhhccC
Confidence 1 2355566666663 111111011111 1111112 333344444443333222211 11
Q ss_pred CCcceec--------------------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 317 SNGHMKL--------------------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 317 Pd~~ty~--------------------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+|.++.- .+..++|+.++... ..|...- |-+=-.++..|++.+|.
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-----------NGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-----------NGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-----------cchhhhhhhccCchHHH
Confidence 2322221 34566777776654 2222222 44445577889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.||.+.++... -+.-+|-.|.++|...|++..|.++|+...+. .-.-+...-+.|-.++-++|.+.+|.+....-...
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998753 23457888999999999999999999986554 43445566677778888899999998877655443
Q ss_pred CCCCCHHHHHHHHHHH------------------HhcCChhHHHHHHHHHHhCCCC
Q 003768 452 GVYPEEPELEALLRVS------------------VEAGKGDRVYYLLHKLRTSVRK 489 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~------------------~~~G~~~~A~~ll~~M~~~~~~ 489 (796)
-..-..+.||..+-.. ...+.++.|.++|.+|...+-.
T Consensus 746 ~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 746 APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3223334555444332 2245577899999999887433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.66 Score=54.04 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC
Q 003768 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (796)
Q Consensus 197 lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (796)
.|.+..++..+.+|+.+++.+....... .-|.-+-.-|+ ..|.++.|.++|. +
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s--~yy~~iadhya----------n~~dfe~ae~lf~-------e-------- 790 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYA----------NKGDFEIAEELFT-------E-------- 790 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhc----------cchhHHHHHHHHH-------h--------
Confidence 3445556667777777777776554321 23444444444 8899999999994 1
Q ss_pred CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-CCCccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-PDDQSRKKDW 347 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-~pd~~ty~~~ 347 (796)
.--++-.|.. |.+.|++++|.++-.+. .|-....+.|- +|+..+|.+++-.+ .|+
T Consensus 791 -~~~~~dai~m------y~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~------- 854 (1636)
T KOG3616|consen 791 -ADLFKDAIDM------YGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD------- 854 (1636)
T ss_pred -cchhHHHHHH------HhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-------
Confidence 1124556777 99999999999986543 44444555664 78888888876665 553
Q ss_pred ccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003768 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410 (796)
Q Consensus 348 ~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~ 410 (796)
-.|..|-+.|..++.+++.+.-.-..+ .-|--.+..-|-..|++..|..-|
T Consensus 855 ---------~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 855 ---------KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---------HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHH
Confidence 456778888888888877664322111 123333444455556666665555
|
|
| >KOG3777 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.019 Score=64.11 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=74.2
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHHcCceEecCC
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 681 (796)
-.-+||||.|||+-.-| -|+...+...++++.+ .+.+...+++ ...|.. +..|.+ ++.++.+...+-+||.
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~-~~~rd~tv~~-~~~r~e---~~~p~~--~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQ-RGHRDITVLV-PSWRKE---ATRPDA--ILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhh-hcccCcchhc-hhhhhc---CCchHH--HHHHHHhccccccCCC
Confidence 35689999999964433 5777888888988887 2223322322 222222 224443 7777777777777988
Q ss_pred C--------CCccHHHHHHHHhcCcEEEeCCccccccccc
Q 003768 682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713 (796)
Q Consensus 682 ~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~l 713 (796)
. .+||+|+.--|.+.+.+|++||..||..-+.
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 7 7999999999999999999999999987644
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.8 Score=45.31 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=88.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
.+.|..+++-|...++.|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|.+. ..|+.-+-+....++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 3455668889999999998753 67787766666654 56788999999998764 6788888888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~-~A~~ll~~M~~~ 486 (796)
++++|..++++...+.- -+..+...||-.--..|... -..+.+..++..
T Consensus 222 ~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998887642 34556666665555566554 345666666655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=7.5 Score=48.77 Aligned_cols=275 Identities=14% Similarity=0.027 Sum_probs=150.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~--tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~a 235 (796)
..++.++|..+++.....-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4467777888777664321111111112211 1112223456789999999999998753111122 122323233
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC--cchhhhcccCccccccccccCChHHHHHHHHHHHHc
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d--~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (796)
+. ..|++++|...+.-. .+.....|-.. ..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 679999998888410 01111111111 1223333334 67889999999888776542
Q ss_pred ----CCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC--CCCC--
Q 003768 314 ----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM-- 385 (796)
Q Consensus 314 ----Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p-- 385 (796)
|. ++.... ...+ ..+-..+...|++++|...+++.... ...+
T Consensus 561 ~~~~~~-~~~~~~------------------~~~~-----------~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 561 IEEQHL-EQLPMH------------------EFLL-----------RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHhcc-ccccHH------------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 11 010000 0001 23334456679999999998876542 1112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCcccH-----HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-- 457 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~-Pd~~ty-----~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-- 457 (796)
...++..+...+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|.+++............
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 2345555677788899999999998887542110 111111 11224455689999999988775542211111
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 -PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 -~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+..+-.++...|+.++|..++.+....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666678889999999999887653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.28 E-value=14 Score=43.50 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=171.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....+..++-..+|.+....- .+.. +.|-....-+-.+||+.+|..++....+..-. +...|-+-+..-.
T Consensus 560 ek~hgt~Esl~Allqkav~~~-pkae------~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~-- 629 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQC-PKAE------ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF-- 629 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHhC-Ccch------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh--
Confidence 334556677777888775542 1222 67777777888889999999999998876422 5667777777777
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
....+++|..+|. ......|-+-+.+ +-.+ .--.+..++|.+++++-.+. .|+
T Consensus 630 --------en~e~eraR~lla-------kar~~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 630 --------ENDELERARDLLA-------KARSISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred --------ccccHHHHHHHHH-------HHhccCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCc
Confidence 7788999999995 3332222222222 2222 22356788888888776654 243
Q ss_pred cceec---------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 319 GHMKL---------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 319 ~~ty~---------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
..-+= .++++.|...+... .|+.+-. +-.+..---+.|.+-+|..+|+.-+.++ +-|
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL----------WllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL----------WLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH----------HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 32211 33444455544444 5555443 1444455556778889999999888775 557
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH------------------------------HHHHHHcC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA------------------------------LSVFCNNG 436 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L------------------------------I~~~~~~G 436 (796)
...|-..|++=.+.|..+.|..++.+..+. +.-+-..|.-. -..|-...
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 888999999999999999988877665443 22222223222 23333345
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+++|.+.|..-+..+ ||. .+|.-+...+.++|.-++-.+++......
T Consensus 832 k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5666666666666543 432 45666666667777666666666665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.23 E-value=2 Score=46.01 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Ccc-cHHHHHHHHHH
Q 003768 366 YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLR-SYGPALSVFCN 434 (796)
Q Consensus 366 g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-----d~~-ty~~LI~~~~~ 434 (796)
|++++|.+.|++-.+ .|-.- -..++.-+...+.+.|++++|.++|++....-+.- ++. .|-..+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 566666666655442 23111 13456778888999999999999999987654332 222 22334445666
Q ss_pred cCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 003768 435 NGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAGKGDRVYY 478 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~--gv~pd--~~ty~~LI~~~~~~G~~~~A~~ 478 (796)
.||...|.+.++..... ++..+ -.....||.+| +.|+.+....
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~ 255 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTE 255 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHH
Confidence 79999999999988754 33222 33456666665 4455544333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.21 E-value=15 Score=43.19 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=102.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
...+...|++..|..++...-+.. +-++-.|-+-++.-.....++.|..+|.+-.. ..|..+.|.--++..--.|+.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhH
Confidence 344444556666666655555443 22455555555555555566666666654332 344555554444444444555
Q ss_pred HHHHHHHHHHHh------------------------------CCC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 439 DKACSVEEHMLE------------------------------HGV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 439 ~~A~~l~~~M~~------------------------------~gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
++|.+++++..+ .|. .| .+..|-.|-+.=-+.|.+-+|..+|++-+-
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 555544433322 121 23 334555555555677888888888888776
Q ss_pred CCCCCChh-HH-HHHHHHHhchHHHHhccccchhhHHHHHhh---hcCCCccccccCCCceeEEEEeeccCCCcccccc
Q 003768 486 SVRKVSPS-TA-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCG 559 (796)
Q Consensus 486 ~~~~~~p~-t~-~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~ 559 (796)
+ .|... .| ..|..-.+.|....|. .++..|++ +.|-+|.+..|+-..|..-+- .++.--.|..-.
T Consensus 748 k--NPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dp 817 (913)
T KOG0495|consen 748 K--NPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDP 817 (913)
T ss_pred c--CCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCc
Confidence 6 44444 34 3376666666554444 23334443 567888888888777776554 333333454433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.71 Score=48.19 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=99.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----c
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~ 435 (796)
.-|++.|++++|++..+. |-.......| +..+.+..++|.|.+.++.|.+- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 357899999999998876 2222333333 33455777899999999999865 345566655555554 4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKE 506 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~ 506 (796)
+.+..|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+.-.. |+| .+.|....-.|+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCC
Confidence 6799999999999873 45999999999999999999999999999998873332 443 455555444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.36 Score=45.22 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 003768 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 416 ~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~ 472 (796)
..+.|+..+..+++.+|+.+|++..|.++.+...+. ++..+...|..|+.=+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 357799999999999999999999999999988765 888889999999987755444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=6.9 Score=48.36 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
..+...|-.||..+-..+++++|.++.+...+. .-.+..+-|..+|..-. ++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------------~~~~~~~lv-------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------------RPLNDSNLL-------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------------cchhhhhhh--------
Confidence 345578999999999999999999999966643 22233344444422222 222222222
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
.++.. +....++..+.-+...|...|- + ..|+
T Consensus 88 ----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~--~---------k~Al--------------- 119 (906)
T PRK14720 88 ----------------NLIDS------FSQNLKWAIVEHICDKILLYGE--N---------KLAL--------------- 119 (906)
T ss_pred ----------------hhhhh------cccccchhHHHHHHHHHHhhhh--h---------hHHH---------------
Confidence 12222 3344444333444444444321 0 0011
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
-.+-.+|-+.|+.++|..+++++.+.. +-|..+.|.+...|+.. ++++|.+++......-+ +..-|+
T Consensus 120 ---------~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~ 186 (906)
T PRK14720 120 ---------RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV 186 (906)
T ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence 456778889999999999999999877 66888999999999999 99999999988765511 222233
Q ss_pred HHHH---HHHHc--CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~---~~~~~--G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.. -+|.. .+++.=..+.+.+..+ |..--+.++-.|-..|-...+++++..+|..+.+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 2222 12211 2333333333333333 44444556666667788888999999999999887
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.2 Score=47.97 Aligned_cols=98 Identities=9% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G 436 (796)
+-.+++-.|...+|.++|-......++-+..-.+.|.++|.+++.++.|++++-.|. -..+..+.--+| +-|-+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHH
Confidence 557888899999999999877665554444444667789999999999999886553 333444444455 4667889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.+--|-+.|+++.... |+..-|
T Consensus 476 eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHhhhHHHccC--CCcccc
Confidence 9888888998888754 666555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=3.3 Score=47.48 Aligned_cols=47 Identities=4% Similarity=-0.130 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
++...-.--+-|-..+++.+.+++++...+. .+++...+..-|.++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~ 289 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLY 289 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHH
Confidence 3355555566677789999999999998753 2444455556666665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.11 E-value=11 Score=42.57 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=108.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
.++-+.|.-.++.++|...|+.-.+-+ +-....||.|=.-|....+...|.+-++...+. .+-|-+.|-.|=.+|.-.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHh
Confidence 556677888889999999999888764 335678999999999999999999999988766 345788888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...=|+-.|++... +.| |...|.+|=+.|.+.++.++|.+-|..-..-
T Consensus 412 ~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 412 KMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred cchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999888888888766 345 7889999999999999999999999987765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.88 Score=40.89 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=74.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI 429 (796)
-.+...+.+.|++++|.+.|+.+....- ......+..+...+.+.|++++|...|+.+.... |+ ...+..+-
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHH
Confidence 3455667889999999999999987531 1123466778999999999999999999987642 33 34566677
Q ss_pred HHHHHcCChHHHHHHHHHHHhCC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..+.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 78889999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.75 Score=51.18 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
..+...|++++|.++|++..... +-+...|..+..+|.+.|++++|+..+++.... .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 34456788899999998888754 346677888888888889999999888887765 33 455666667778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
++|...|+...+.. |+......++.-
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 88888888887743 665555555433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.59 Score=49.94 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=116.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
|-+.|.+.+|.+.|+.-.+.--.||. | -.|-..|.+..+.+.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dT--f---------------------------------llLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDT--F---------------------------------LLLSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhH--H---------------------------------HHHHHHHHHhccHHHHHH
Confidence 88888888998888776665433333 3 447788899999999999
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+|.+-.+. -|-.+|| .-+.+.+-..++.++|.+++++..+.. .-++....++-.+|.-.++.+.|+..+..+...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 99887664 3544544 667888888999999999999887652 2456666667777888899999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+. +...|+.+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 64 5556666666666778888888777776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.6 Score=52.69 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=99.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~ 434 (796)
-.|-....+.|..++|..+++...+.. +-+......+...+.+.+++++|....++.... .|+..+.-.+. .++.+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH
Confidence 445566677889999999999988752 334667788999999999999999999988765 46665554444 56667
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.++|++....+ |+ ...+..+=..+-..|+.++|...|+.-.+.
T Consensus 167 ~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 167 IGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999844 44 677888888888999999999999987654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=5 Score=50.32 Aligned_cols=272 Identities=8% Similarity=-0.015 Sum_probs=156.3
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--K-LG--QYHYNVLLY 234 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi--~-pd--~~tyn~LL~ 234 (796)
...++.++|...+++....- +.. ..+ -...++.+-..+...|++++|...+.+.....- . +. ..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35678888999888864321 111 011 113455566677889999999999999874211 1 11 122333333
Q ss_pred HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC----cchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
.+. ..|++++|...+.-. .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 334 579999998887410 11111112111 1223333333 56679999999888876
Q ss_pred HHcC--CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CCC
Q 003768 311 ENLG--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (796)
Q Consensus 311 ~~~G--i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~ 384 (796)
.... ..|... +. .+ ..+-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~~---------~~-----------~~-----------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQQ---------LQ-----------CL-----------AMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchHH---------HH-----------HH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 5431 111100 00 01 33445667789999999998887542 111
Q ss_pred CCHHH-H-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC
Q 003768 385 MNEAS-L-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (796)
Q Consensus 385 pd~~t-y-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p 455 (796)
..... . ...+..+...|+.+.|...+............ ..+..+-..+...|+.++|..+++..... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 11101 1 11234455689999999998765432111110 01234556677889999999999887653 4333
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 456 d-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 234555666778999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.2 Score=45.16 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=83.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~-~~~g~--~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
..+-..|...|++++|...|+...... +-|...+..+..++ ...|+ .++|.+++++..+..- -+...+..+-..+
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~ 154 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 667778889999999999999888764 34777888888864 67777 5999999999887632 2567777788889
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 99999999999999998754 3454443 34444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.52 E-value=8 Score=45.18 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=167.5
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.++..+-..++.+.+..--.+...-+|. ..|..+-..|-.+|+++.|..+|+...+-..+- +.....+=-.|+....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemEl- 436 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMEL- 436 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHH-
Confidence 4556666777777655322222223444 678888889999999999999999988765442 2223333333443322
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccC------CCCCc--------chhhhcccCccccccccccCChHHHHHHHH
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~------gv~d~--------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
+..+++.|..+..-- ..+.... |-.++ ..|.-.++- --..|-++....+++
T Consensus 437 -----rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYd 501 (835)
T KOG2047|consen 437 -----RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYD 501 (835)
T ss_pred -----hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHH
Confidence 455666676665300 0011110 00111 113333333 334567788888888
Q ss_pred HHHHcCCCCCcceec-------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh-cc--CHHHHHHHHHHH
Q 003768 309 EKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KY--AFQRGFEIYEKM 378 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k-~g--~~~~A~~lf~~M 378 (796)
.|.+..+..-.+..| +.-++++++.+++.. ..+ .|.++.+.. |+-+.-+.+ -| .+++|..+|++.
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI---~LF-k~p~v~diW-~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI---SLF-KWPNVYDIW-NTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC---ccC-CCccHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888877654444444 556777777777751 001 111111111 444333333 23 689999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003768 379 CLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (796)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~--~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~ 454 (796)
.+ |++|.-.-+--|+-+- -+.|....|..++++.. .++.+. ...||..|.--+..--+....++|++.++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 88 7776544332222221 13578888899988843 334443 456777776555544455666777766664 4
Q ss_pred CCHHHHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 003768 455 PEEPELEALLRVS---VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 455 pd~~ty~~LI~~~---~~~G~~~~A~~ll~~M~~ 485 (796)
||...=..-|+.. ++.|..|+|..++..-.+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 6655544444332 677888888877766544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.6 Score=51.74 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=132.0
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CC-HHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LG-QYHYN 230 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~-~Gi~--------pd-~~tyn 230 (796)
...|+.+.|.+-..-+ +.. +.|..|-+.|.+..+++-|.-.+-.|.. .|.+ |+ ...=.
T Consensus 739 vtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakv 806 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKV 806 (1416)
T ss_pred EEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHH
Confidence 3456777787777777 333 8999999999999999999988888873 2322 11 11111
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
++|.. ..|.+++|..++. .=.+ |..|-+- |-..|.+++|.++-+.-
T Consensus 807 AvLAi------------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 807 AVLAI------------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HHHHH------------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 11111 4577888888873 1111 2333333 66678888888776543
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCC--------
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-------- 382 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~g-------- 382 (796)
.+--++-.-+-|. + ..+| ..+....|..|-|.|. -|+++|+.+.+.-
T Consensus 853 DRiHLr~Tyy~yA-~-~Lea---------------------r~Di~~AleyyEK~~~--hafev~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA-K-YLEA---------------------RRDIEAALEYYEKAGV--HAFEVFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred cceehhhhHHHHH-H-HHHh---------------------hccHHHHHHHHHhcCC--hHHHHHHHHHhChHHHHHHHH
Confidence 3322222222221 0 0000 1112334444555554 2555555554321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
-.-|...|.-.-.-+-..|+.|.|+.++...+. |-+++...|-.|++++|-++-++- -|....--
T Consensus 908 ~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 908 RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 123444444444444567888888888876543 345666667777777777766553 23344444
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 003768 463 LLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M 483 (796)
|-+.|-..|++.+|..+|.+-
T Consensus 973 laR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 556666666666666666553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.43 E-value=3.8 Score=49.93 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
..|+.|-.|-. ..|.+.+|.+-|- ...|...|--+|+. ..+.|.+++-.+.
T Consensus 1105 ~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eVi~~------a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1105 AVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEVIDV------ASRTGKYEDLVKY 1155 (1666)
T ss_pred HHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHHHHH------HHhcCcHHHHHHH
Confidence 45555555555 5667777777662 11255568888888 8888888888887
Q ss_pred HHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
+..-+.+.-+|.+- +.+|-+|++.+++.+-.++. ..||
T Consensus 1156 L~MaRkk~~E~~id-----------------------------------~eLi~AyAkt~rl~elE~fi-------~gpN 1193 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID-----------------------------------SELIFAYAKTNRLTELEEFI-------AGPN 1193 (1666)
T ss_pred HHHHHHhhcCccch-----------------------------------HHHHHHHHHhchHHHHHHHh-------cCCC
Confidence 76555555555543 45777777777766554443 1355
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------------------CCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------------GINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------------gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
..-.-.+=+-|...|.++.|.-++.....- .-.-+..||--+-.+|...+.+..|
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA----- 1268 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA----- 1268 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----
Confidence 555555555555555555555444322100 0112455666555555555554433
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 447 ~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.|-...+........-||..|-..|.+++...+++.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 333334445666777888888888888887777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=11 Score=43.65 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~--------~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
....|.+++...-+..-.-..++--+++......|+++.|.+++. .+.+.+..|-++.+ ++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 456677777666654322234555667777888999999999999 66677777766554 66777888888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhch
Q 003768 439 DKACSVEEHMLEH--GVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSK 505 (796)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~----~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~ 505 (796)
+.|-.++.+-... .-.+.......++.-. .+.|..++|..+++++.... +.+.++ ...+.++++-.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 8888888776542 1123333444444333 57899999999999999841 222223 33366666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.24 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 003768 428 ALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+..+|.+.|++++|.++++.+.
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444443333
|
... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.6 Score=51.41 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec----
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---- 323 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~---- 323 (796)
+.|-...|..+|.- ...|.-+|-+ |+..|+..+|..+...-.+ -.||..-|.
T Consensus 410 slGitksAl~I~Er----------------lemw~~vi~C------Y~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 410 SLGITKSALVIFER----------------LEMWDPVILC------YLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred HcchHHHHHHHHHh----------------HHHHHHHHHH------HHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 78888899999851 1235667778 9999999999988887777 357887777
Q ss_pred ----cchhhhHHhhhhcC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 324 ----NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (796)
Q Consensus 324 ----~g~~~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (796)
..-.++|.++++.. ..--..+ + .-..+.++++++.+.|+.-..-. +.-..+|=.+=-++-
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~-----------~---~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSL-----------A---LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhh-----------c---cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 45566777765543 0000000 0 01123578888988887544322 223446655555666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~ 477 (796)
+.+++..|.+.|...... .|| ...||.+=.+|.+.|+-.+|+..+.+-.+.. .-+...|..-+-...+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 789999999999876543 565 5689999999999999999999999999887 556667777777789999999999
Q ss_pred HHHHHHHhC
Q 003768 478 YLLHKLRTS 486 (796)
Q Consensus 478 ~ll~~M~~~ 486 (796)
+.+++|...
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 998887553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=7.3 Score=45.04 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=85.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH--HHHHHH--
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC-- 433 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~--LI~~~~-- 433 (796)
=|+-+.+.|.+++|......+...+ +-|...+-+=+-+..+.+.+++|+.+.+. .+ -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 3567788899999999999998776 55677777778888999999999966653 21 1122232 245666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+..++|...++ |..++.. +...=-..+-+.|++++|+++++.+.++
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6789999998887 3334333 4444446678899999999999999776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=3 Score=50.50 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=101.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
..+.|+.++|..+++...+. .||.... .-.+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 56778889999988877665 3554433 1556778899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..++..... +-+......+-.++.+.|+.++|..+|++.... .|+ ...+..+=..+-..|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 345667788888899999999999999999873 233 5677777778888999999999999887641
Q ss_pred CCCCHHHHHHHH
Q 003768 453 VYPEEPELEALL 464 (796)
Q Consensus 453 v~pd~~ty~~LI 464 (796)
.|...-|+.++
T Consensus 219 -~~~~~~~~~~~ 229 (694)
T PRK15179 219 -GDGARKLTRRL 229 (694)
T ss_pred -CcchHHHHHHH
Confidence 24445555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.48 E-value=8.1 Score=42.30 Aligned_cols=104 Identities=9% Similarity=-0.040 Sum_probs=64.2
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
-.|.-+...|+...|.++..+.+ .||..-|-..|++++..++|++-.++-.. .- ..+-|-+.+.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 33555566666666666654442 46777777777777777777765554322 12 2366777777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll 480 (796)
+..+|..+...+ ++..-+..|.++|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777777666551 2245556667777777765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=7.2 Score=45.41 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH----------
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP---------- 458 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~---------- 458 (796)
+.-.+..-+-+...+..|-++|..|-.. ..++......+++.+|+.+-+...+ +.||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3344444444566677888888877543 3467777888899999888777654 234332
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 459 -ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 459 -ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-|.---++|-++|+..+|.++++.+..+
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444456778888888888888888766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=3 Score=40.97 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
+-..+...|++++|...|++.....-.+. ...+..+...+.+.|+.++|...+.+...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445556666666666666654332221 24556666666666666666666665554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=3.6 Score=40.42 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEA 462 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~ 462 (796)
....|..+...+...|++++|...|++..+..-.+. ...|..+-..+.+.|+.++|...+.+..+.. | +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 345678888889999999999999999876543332 3567778888999999999999999888743 4 3445556
Q ss_pred HHHHHHhcCC--------------hhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003768 463 LLRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (796)
Q Consensus 463 LI~~~~~~G~--------------~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (796)
+-..+...|+ +++|.+++.+.... .|+.+..+..|.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~ 161 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWL 161 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHH
Confidence 6666666665 34555555555443 344444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.33 E-value=5.3 Score=48.72 Aligned_cols=251 Identities=10% Similarity=0.036 Sum_probs=153.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccccCCcccC
Q 003768 170 YKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (796)
Q Consensus 170 ~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (796)
+.+.+..++.++.... .| ..-+..+.++.-++-+.+-+++++...-. -+.-+.-.-|.||-.-.+++
T Consensus 967 RqLiDqVv~tal~E~~--dP--e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad------- 1035 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQ--DP--EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD------- 1035 (1666)
T ss_pred HHHHHHHHHhcCCccC--Ch--HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-------
Confidence 4566666666654433 23 34456678888899999999999988732 23333444455554444222
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchh
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (796)
-.+..+... -.+..+.++. -+. ...++.+++|..+|+.-.-.+-.-++..-+-+.+
T Consensus 1036 ----~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1036 ----RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred ----hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence 112222221 0011111111 111 3445667888888775432211111111114556
Q ss_pred hhHHhhhhcC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003768 328 LDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (796)
Q Consensus 328 ~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (796)
+.|.++-++. +|. +| +-+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+.+.+.|.+++-
T Consensus 1092 dRA~efAe~~n~p~--vW-----------sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VW-----------SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHhhCChH--HH-----------HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 6666655554 343 45 66778888888888888766542 3678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 407 ~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
...+...++..-.|.+. +.||-+|++.+++.+-.++.. | ||......+=+-|...|.++.|.-++...
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-----g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-----G--PNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----C--CCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88887777777777665 469999999999877665552 2 77777777777777777777776666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.15 Score=43.76 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHH
Q 003768 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~ 443 (796)
|+++.|..+|+++.+..-. ++...+-.+..+|.+.|+.++|..+++. .+. .|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666677777766654321 1333334466667777777777777765 211 1221 111222344556666666666
Q ss_pred HHHH
Q 003768 444 VEEH 447 (796)
Q Consensus 444 l~~~ 447 (796)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.34 Score=39.41 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=50.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
.+.|++++|.++|+.+.... +-|...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46789999999999998764 337777888999999999999999999998765 46655555444
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=5.3 Score=46.78 Aligned_cols=138 Identities=9% Similarity=-0.018 Sum_probs=94.3
Q ss_pred hhHHHHHHhcc-----CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHC-CCCC
Q 003768 356 EIRLSEDAKKY-----AFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMVKRMKSL-GINP 420 (796)
Q Consensus 356 n~lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g--------~~~~A~~l~~~M~~~-gi~P 420 (796)
...+.|..... ..++|.++|++..+. .|| ...|..+..++.... ++..+.+........ ....
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 66776654422 378999999998876 355 345555444443321 123333333332222 1233
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (796)
+...|..+-..+...|+.++|...++...+.+ |+...|..+-..+...|+.++|.+.+.+-... .|...||-.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~~~ 493 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYWIE 493 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 44677776555666899999999999999876 78999999999999999999999999988776 66666765443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.99 E-value=8.4 Score=44.17 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=100.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCcccH-HHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~-M~~~gi~Pd~~ty-~~LI~~~ 432 (796)
-..|+.--|..-++.|..+|.+.++.+..+ .+.+++++|.-||. +|.+-|+++|+- |++. +|.-.| ..-|+.+
T Consensus 370 ~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 370 CQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFL 445 (656)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 556777777778889999999999888777 88889999988875 678889999975 3333 444444 4567778
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~--~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...++-..|..+|+.....++.||. ..|..+|+.=+.-|++..+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8889889999999999888666654 68999999999999999988888877654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.9 Score=46.71 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHH
Q 003768 368 FQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 368 ~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
.+...++++++... .+.|+ .+|-.+|+.--+..-+..|..+|.+..+.+..+ +++.++++|..||. +|-+-|+.+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55666677766654 33444 678889999899999999999999999998888 89999999998885 6678999999
Q ss_pred HH-HHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----HHHH
Q 003768 446 EH-MLEHGVYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS----TADV 497 (796)
Q Consensus 446 ~~-M~~~gv~pd~~ty-~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~----t~~~ 497 (796)
+- |+.. +|...| ..-++.+...++-..|..||++...+ ..+++ .|..
T Consensus 425 eLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 425 ELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDR 477 (656)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHH
Confidence 85 4443 455555 57888899999999999999999988 55554 5655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.69 Score=49.65 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
+|-.+|+. .-+.+.++.|..+|.+-.+.+ +..+++.. .++
T Consensus 3 v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~---------------------------------~A~ 43 (280)
T PF05843_consen 3 VWIQYMRF------MRRTEGIEAARKVFKRARKDKRCTYHVYVA---------------------------------YAL 43 (280)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCS-THHHHH---------------------------------HHH
T ss_pred HHHHHHHH------HHHhCChHHHHHHHHHHHcCCCCCHHHHHH---------------------------------HHH
Confidence 35555555 666667899999998887543 22222222 445
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHH
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCN 434 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~~~ 434 (796)
|. |...++.+.|..||+...+. ..-+...|...|+-+.+.++.+.|..+|+..... + |.. ..|...|..=.+
T Consensus 44 ~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 44 ME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp HH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHH
T ss_pred HH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHH
Confidence 44 33356777899999998875 4567888999999999999999999999997755 3 443 489999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
.|+++.+..|.+.+.+. .|+...+..+++-|
T Consensus 120 ~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999874 45544444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.67 E-value=33 Score=40.34 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t-y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-.++..|-+.|+++.|.+..+.-..+- |+.+. |-+=-+.+..+|++++|..++++-++-
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 346667777788888888887776643 55443 333335567778888888888877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.29 Score=41.95 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 003768 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi-~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~ 477 (796)
.|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|.++++. ...+ |.. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987633 12334444478899999999999999988 3222 333 33334466678999999999
Q ss_pred HHHHH
Q 003768 478 YLLHK 482 (796)
Q Consensus 478 ~ll~~ 482 (796)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.92 Score=43.20 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~t 459 (796)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+.. -|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555566666666666666665442 23555666666666666666666666655532 256565544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=3 Score=46.39 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=78.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~ 472 (796)
...+...|++++|..+|.+..+..- -+...|..+-.+|.+.|++++|...++...+.. | +...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 3556678999999999999887522 245566667788899999999999999998854 5 56678888888999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 473 GDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 473 ~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
+++|...|++.... .+.......
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999998876 544443333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=91.25 E-value=26 Score=38.37 Aligned_cols=209 Identities=11% Similarity=-0.003 Sum_probs=119.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMD 276 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (796)
..+...+..++|+.+++.++.. .|+-. .|+..=.++. +.| .+++++..++ ++... .-+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-npk 104 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NPK 104 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CCc
Confidence 3345667888999999998864 33332 3332222233 334 4677777773 33322 222
Q ss_pred CcchhhhcccCccccccccccCC--hHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
+...|+---.. +.+.|. .+++..++++|.+.. . .|...|
T Consensus 105 nyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----p-------------------kNy~AW---------- 145 (320)
T PLN02789 105 NYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----A-------------------KNYHAW---------- 145 (320)
T ss_pred chHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----c-------------------ccHHHH----------
Confidence 44445533222 222232 255666666665542 1 111122
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCCCcccHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---g~~----~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
+-.--.+.+.|.+++|++.++++.+.+ .-|..+|+-.--.+.+. |.. +++.+...++... -.-|...|+-
T Consensus 146 -~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Y 222 (320)
T PLN02789 146 -SHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRY 222 (320)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHH
Confidence 333334455678999999999999876 34566777665555554 222 4566666555544 2235677777
Q ss_pred HHHHHHHc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 428 ALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 428 LI~~~~~~----G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
+-..+... +...+|.+.+.+....+ ..+...+..|++.|+..
T Consensus 223 l~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 223 LRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77777663 34456888888766643 34667788899999863
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.64 Score=44.32 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=53.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~-----~gi~Pd~~t 424 (796)
..++..+...|++++|.++...+.... +.|+..|-.+|++|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 557778889999999999999998865 66899999999999999999999999998853 499887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.58 Score=49.07 Aligned_cols=85 Identities=11% Similarity=-0.036 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~----------------~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
.+.++-...-++.|++-|+.-|..+|+.||+.+-+..- -+-+.+++++|...|+.||-.+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 35677778888999999999999999999998766432 23588999999999999999999999
Q ss_pred HHHHHHcCCh-HHHHHHHHHHH
Q 003768 429 LSVFCNNGDV-DKACSVEEHML 449 (796)
Q Consensus 429 I~~~~~~G~~-~~A~~l~~~M~ 449 (796)
|++|.+.+.. .+-..+.--|.
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhccccccHHHHHHHHHhhh
Confidence 9999998853 33444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.88 E-value=6 Score=44.76 Aligned_cols=116 Identities=12% Similarity=0.136 Sum_probs=57.5
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~ 442 (796)
..|..++|+..++.+... .+-|..-.....+.+.+.++..+|.+.++.+... .|+. ...-.+=.+|.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555555443 1223444444455555556666666665555443 3442 11222334555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
.+++...... +-|...|..|-.+|...|+..+|..-.-++
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5555544332 234555555666666655555555444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.6 Score=45.98 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=109.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH-HHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty-~~LI~~~~ 433 (796)
.+.|+.-.+..-++.|..+|-+.++.| +.+++..|+++|.-+|. |+..-|..+|+-=.. .-||.-.| +-.+..+.
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHH
Confidence 778888888889999999999999999 67999999999988875 788889999975222 23666555 34677788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
+.++-+.|..+|+.-+++ +.-+ ...|..||+-=...|++.-|+.+=++|... .|..++..+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 899999999999954432 1122 568999999999999999999999999988 777766555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.5 Score=41.79 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=65.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+-..+...|++++|...|+........|+. ...-.|...+...|++++|+..++....... ....+...=..|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHC
Confidence 446778899999999999999987633322 2444578888899999999999977443333 223444455688899
Q ss_pred CChHHHHHHHHH
Q 003768 436 GDVDKACSVEEH 447 (796)
Q Consensus 436 G~~~~A~~l~~~ 447 (796)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.64 E-value=41 Score=39.60 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=23.2
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
|++|-+- |.+.|+++.|..+|++-..
T Consensus 251 w~SLAdY------YIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 251 WCSLADY------YIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHH------HHHhhhhHHHHHHHHHHHH
Confidence 8999899 9999999999999988554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=90.47 E-value=4.3 Score=39.67 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
...+...|++++|...|++.......+ ...+|..+-..+...|+.++|...++....
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555554332111 123455555555555555555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=90.02 E-value=12 Score=40.12 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--cccHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPAL 429 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----gi~Pd--~~ty~~LI 429 (796)
-.+..|.+.|++..|-+++.++ -..|-.. |++++|.+.|++-.+. | .+. ..++.-+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 3455667777777776655544 3455555 7888888887765432 2 111 33455677
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCC-----CCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~-----pd~~t--y~~LI~~~~~~G~~~~A~~ll~~M~~~~ 487 (796)
..+.+.|+.++|.++|++.....+. .+... +.++| ++...|+...|.+.|++.....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999998865332 22322 24444 4455799999999999988663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.63 E-value=42 Score=38.16 Aligned_cols=257 Identities=13% Similarity=0.104 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~-------~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
|-.+|=-.|..--..|+.+...++|+..+. +++|-. +.|-=+=++|-..- ...+.+++.+++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEl-------e~ed~ertr~vyq-- 390 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEEL-------EAEDVERTRQVYQ-- 390 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHH--
Confidence 336777777777888999999999999985 456632 22222222222111 2345555555552
Q ss_pred ccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCc
Q 003768 263 TMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQ 341 (796)
Q Consensus 263 ~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~ 341 (796)
...+ -++ ..+||.-+=-. +..--.+..++..|.+++..- .|. .|-.
T Consensus 391 -----~~l~--lIPHkkFtFaKiWlm--yA~feIRq~~l~~ARkiLG~A--IG~----------------------cPK~ 437 (677)
T KOG1915|consen 391 -----ACLD--LIPHKKFTFAKIWLM--YAQFEIRQLNLTGARKILGNA--IGK----------------------CPKD 437 (677)
T ss_pred -----HHHh--hcCcccchHHHHHHH--HHHHHHHHcccHHHHHHHHHH--hcc----------------------CCch
Confidence 1111 112 22332222111 000012233444444443321 233 3444
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INP 420 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-i~P 420 (796)
.++ ..-|.--.+.+.+++...+++....-+ +-|..+|.-....=...|+.|.|..+|+-..+.. +.-
T Consensus 438 KlF-----------k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 438 KLF-----------KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred hHH-----------HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 444 666777778889999999999998876 5578889888888888999999999999877652 112
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--Hh---cC-----------ChhHHHHHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS--VE---AG-----------KGDRVYYLLHKLR 484 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~--~~---~G-----------~~~~A~~ll~~M~ 484 (796)
-...|-+-|+.=...|..++|..+++.+.+.. +...+|-.+-..= .. .| ....|..+|++..
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 23445555665667899999999999998863 4444554433322 22 22 3446777777643
Q ss_pred hCCC--CCChhHHHHHHHHHh
Q 003768 485 TSVR--KVSPSTADVIAKWFN 503 (796)
Q Consensus 485 ~~~~--~~~p~t~~~I~~~~~ 503 (796)
..-. ++...-..++++|-.
T Consensus 584 ~~~k~~~~KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 584 TYLKESTPKEERLMLLEAWKN 604 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 3211 333334455666643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=7.9 Score=41.17 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPEL 460 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty 460 (796)
...|..-+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345666666666678888888888888765 3443 244446677788889999999888887642 01112333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-.+...+...|+.++|..+|+.+.+. .|...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 34455566889999999999988887 66554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=89.19 E-value=5.3 Score=38.96 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 371 GFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 371 A~~lf~~M~-~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
+...+..+. ..+..--...|..+...+...|++++|...|++.....-.|. ..+|..+=..+...|+.++|.+.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444442 333222355677788888889999999999998876532221 24677777888999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-------hcCChhHHHHHHHH
Q 003768 448 MLEHGVYPEEPELEALLRVSV-------EAGKGDRVYYLLHK 482 (796)
Q Consensus 448 M~~~gv~pd~~ty~~LI~~~~-------~~G~~~~A~~ll~~ 482 (796)
..... .....++..+...+. ..|+.++|...+++
T Consensus 98 Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 98 ALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 87642 123445666666666 67777766555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=88.95 E-value=11 Score=35.04 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cccHH-HHHHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYG-PALSVFCN 434 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~-~LI~~~~~ 434 (796)
.+-..|+.++|..+|++-...|.... ...+-.+-..+-..|+.++|..+|++.... .|+ ..... .+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 34556778888888887777775543 234445566666778888888888776643 133 11111 11224556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
.|+.++|.+.+-.... ++...|.--|..|+
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777777776655444 34445655555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=88.76 E-value=14 Score=34.74 Aligned_cols=110 Identities=8% Similarity=-0.021 Sum_probs=81.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+|..+.+.+.......+++.+...+ ..+...+|.+|..|++.. ..+..+.+.. .++.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 678889988899999999999999887 478889999999999864 3444444442 24556666688888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHK 482 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~-G~~~~A~~ll~~ 482 (796)
+..++|..++..+.. |...++.+... ++.+.|.+++.+
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 988888888877643 22233334444 778888887765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.51 E-value=20 Score=43.54 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=49.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
+.+.++.++|..+++.....+ ++ |..|.-++-..|-..|+.++|..+|++... .-|+..-...++.+|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHH
Confidence 456677788888888773322 21 557888888888888888888888888764 3466666667777777
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.42 E-value=52 Score=37.63 Aligned_cols=142 Identities=7% Similarity=-0.051 Sum_probs=88.9
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
-.|+.-.|.+.|+......-.++. .|--+..+|....+.++.+..|++-...+- -|..+|..==..+.-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHH
Confidence 367778888888887765433322 266677778888888888888887765532 244556555555556677888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 444 VEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 444 l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
=|+.-++. .| ++..|.-+--+.-|.+.+++++..|++.+.+ .|+ |+.|+. -.-+-..+...+|.
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 78777663 24 3344555555556777888888888888776 443 335554 33333344444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.06 E-value=9 Score=46.34 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=100.3
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
.....+++..|+.....+.++. || ..|..++.++. +.|+.++|..+++.....+.. |..|...+-..|-..|..
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3445678899999998877652 44 34555666654 789999999999988766554 889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHh
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFN 503 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~ 503 (796)
++|..+|++.... .|+..-...+..+|.|.+.+.+-.+.=-+|-.. .|+.. .|++|.=.+.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 9999999998765 488888899999999999887655444444443 33333 4555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.01 E-value=50 Score=39.98 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=88.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHH
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf 375 (796)
..|.+|.|+.++..-+..=...-+..| .|++.+|-.+-++-..-...| .+-..|-..|++.+|..+|
T Consensus 924 S~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~AAcY------------hlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDKAACY------------HLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccHHHHH------------HHHHHhhhhHHHHHHHHHH
Confidence 367888888888766554222222223 777777777766543333333 3556677777888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHH---------------HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDM---------------AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 376 ~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~---------------A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
-..+ +|+.-|+.|-..+--|+ |-..|++ .|. -+...+--|-++|.+.+
T Consensus 991 TrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 991 TRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHH
Confidence 7643 56666665444332222 2222222 221 12334555778888888
Q ss_pred HHHHHH--------HHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 441 ACSVEE--------HMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 441 A~~l~~--------~M~~~gv~--pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|+++-- +++...+. .|....+.--+.++...++++|..+|..-
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 876521 22333333 35555666666666777777777666543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.6 Score=44.53 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 299 ~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
.+++...+++.|.+.|+.-+.++| .-|..++.+- +. --......+|.++|+.|
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~-----laA~~i~~~~--~~--------------------~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLY-----LAALIILEEE--EK--------------------EDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHH-----HHHHHHHHhc--cc--------------------ccHHHHHHHHHHHHHHH
Confidence 457778999999999999999888 2233222221 00 01223566899999999
Q ss_pred HhCC---CCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCC---hHHHHHHHHH
Q 003768 379 CLDE---VPMNEASLTAVGRMAMSMGD----GDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGD---VDKACSVEEH 447 (796)
Q Consensus 379 ~~~g---i~pd~~ty~~LI~~~~~~g~----~~~A~~l~~~M~~~gi~Pd~~-ty~~LI~~~~~~G~---~~~A~~l~~~ 447 (796)
++.. -.++-..+.+|+.. ...+ .+.++.+++.+.+.|+..+-. -+.+-|-+++.... +.++.++++.
T Consensus 130 Kk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 130 KKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred HHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9864 24788888888766 3333 356788888888888766533 33344444444322 4567889999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHh
Q 003768 448 MLEHGVYPEEPELEALLRVSVEAGKG-----DRVYYLLHKLRT 485 (796)
Q Consensus 448 M~~~gv~pd~~ty~~LI~~~~~~G~~-----~~A~~ll~~M~~ 485 (796)
+.+.|+++....|..+ ..++-.+.. +...++.+.+.+
T Consensus 208 l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 9999999888777644 344433332 334444445544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.91 E-value=8.4 Score=40.36 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=102.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH----
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV---- 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~---- 431 (796)
++++..+.-.|.+.-...++.+..+..-+.+.+..+.|.+.-.+.||.+.|...|+...+..-+.|..+++.++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 6666766667778888889999999877888999999999999999999999999988776556677777766542
Q ss_pred -HHHcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 432 -FCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 432 -~~~~G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
|.-.++...|...+.++....- -|++.- -+|+..| .|+..+|.+.+..|... .|.|.+-
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchh
Confidence 3345788888888888876531 122222 3565555 58899999999999988 6666643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=87.62 E-value=2.3 Score=34.16 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
.+.+.|++++|.++|++..+.. +-+.-.+..+-.++...|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666777777777766654 22455666666666667777777776666643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.32 E-value=19 Score=37.64 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
-.|+-+.+..+....... -.-|......++....+.|++.+|...|.+.... -.+|...|+.+=-+|-+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHH
Confidence 344444444444433221 2335556677999999999999999999997654 56899999999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 444 VEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 444 l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-|....+- .|+ ...+|.|--.|.-.|+.+.|..+|..-... +...+
T Consensus 156 ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~ 202 (257)
T COG5010 156 AYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADS 202 (257)
T ss_pred HHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCch
Confidence 99887763 343 345567777777889999999999998887 44343
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=42 Score=35.14 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+-.-|-+.|....|..=++.+.+. +........-.|+.+|.+.|..++|......+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 445577888888888888888875 4455666777888888888988888887766544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=9 Score=37.26 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=40.9
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A 441 (796)
+...|++++|..+|+.+..-. +-+..-|-.|--+|-..|++++|...+........ -|.+.|-.+=.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555432 11223333344444445555555555555444432 2334444444455555555555
Q ss_pred HHHHHHHH
Q 003768 442 CSVEEHML 449 (796)
Q Consensus 442 ~~l~~~M~ 449 (796)
.+-|+.-+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.44 E-value=13 Score=40.23 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHHcCC
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS--MG----DGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~--~g----~~~~A~~l~~~M~~~g---i~Pd~~ty~~LI~~~~~~G~ 437 (796)
.+++...+++.|++.|..-+..+|-+..-.... .. ....|..+++.|++.. ..++-+++..||.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 367788899999999999988777663333322 22 3567999999999874 34677888888776 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChhHHHH--HHHHH
Q 003768 438 ----VDKACSVEEHMLEHGVYPEEP--ELEALLRVSVEAGK--GDRVYYLLHKLRTSVRKVSPSTADV--IAKWF 502 (796)
Q Consensus 438 ----~~~A~~l~~~M~~~gv~pd~~--ty~~LI~~~~~~G~--~~~A~~ll~~M~~~~~~~~p~t~~~--I~~~~ 502 (796)
++.+..+|+.+.+.|+..+.. ..+.+|..+-.... ..++.++++.+++++..+.+..|.. +.++.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 355778889999988877543 33344433322222 4589999999999966666665544 44443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=86.28 E-value=2.8 Score=33.59 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|++++|.++|+...+.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666544 3 3344445555555666666666666665443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.86 E-value=65 Score=36.11 Aligned_cols=251 Identities=10% Similarity=-0.010 Sum_probs=135.3
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 195 RVELDMC--SKRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 195 n~lI~a~--~k~G~~~~A~~lf~~M~~-~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..-|.++ |-.++-..|..++-.+.. .-++-|++....+-+.+. ..|+.+.|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 3344444 345666666666666653 456677888888888888 88999999999951 11222
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-------CCCCcceeccchhhhHHhhhhcC---CCCc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-------QFSNGHMKLNSQLLDGRSNLERG---PDDQ 341 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-------i~Pd~~ty~~g~~~~A~~l~~~m---~pd~ 341 (796)
-..++..-.|..| +.+.|+.+....+...+.... +..-.+.|-..+...|+.+-+.- .|+.
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 1111111115555 556777777777766664432 11122222244444555444332 1111
Q ss_pred ccccccccccccchhhHHH--HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 342 SRKKDWSIDNQDADEIRLS--EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~--~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
+- ..++. .+...++.++|.=-|+....-- +-+.-.|-.|+..|...|.+.+|.-+-+...+. +.
T Consensus 334 ~~------------alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~ 399 (564)
T KOG1174|consen 334 HE------------ALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQ 399 (564)
T ss_pred ch------------HHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hh
Confidence 11 11222 2345667788877777655431 246678888888888888888877665543322 11
Q ss_pred CCcccHHHHHH---HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 420 PRLRSYGPALS---VFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 420 Pd~~ty~~LI~---~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-+..+.+ |+. .+-.-..-++|..+++.-.. +.|+- ..-+.+-..+...|..+++..+++.-...
T Consensus 400 ~sA~~Lt-L~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 400 NSARSLT-LFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred cchhhhh-hhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 1222222 111 11111224566666655443 23443 23345555566777777777777776655
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.32 E-value=53 Score=34.55 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=77.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
.|..++|.++++.+.+.. +-|.++|--=|-..-..|+--+|.+-+.+..+. +.-|...|.-|-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 456778888888887766 667777776666666667766777777666655 556788888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003768 445 EEHMLEHGVYPEEPEL-EALLRVSVEAG---KGDRVYYLLHKLRTS 486 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty-~~LI~~~~~~G---~~~~A~~ll~~M~~~ 486 (796)
+++|.-. .|....| ..+-+.+--.| +.+-|..++.+-.+.
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8887763 3655444 33434332222 344555555554443
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.04 E-value=31 Score=36.97 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=35.2
Q ss_pred cccccccccCCCchhhhccccccccccccccccchhhhhhhhhccCCccCCCCCc
Q 003768 83 KGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLR 137 (796)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (796)
...+-|.-..|..++.+..+- +..+..+...||+...|+..-.|++.....+..
T Consensus 33 da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~s 86 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVKS 86 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCccc
Confidence 334444444555555555444 344567888999999999999998876555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.29 E-value=6 Score=32.38 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|.+.+++++|.++++.+.... | +...|...=..+.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455566666666666555542 2 2333334444455566666666666665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.84 E-value=15 Score=41.20 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=108.5
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|...|+. --+..-++.|..+|-+..+.| +.|+++.| ++
T Consensus 398 ~v~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~---------------------------------~A 438 (660)
T COG5107 398 FVFCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIY---------------------------------CA 438 (660)
T ss_pred hHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeee---------------------------------HH
Confidence 447777777 667777899999999999988 66777777 99
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCN 434 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~ 434 (796)
+|.-+|. |+..-|..+|+-=... -||...| +-.+.-+...++-+.|..+|+.-..+ +.-+ ...|-.+|..=.+
T Consensus 439 ~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 439 FIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred HHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHh
Confidence 9998876 5557899999753332 2455554 55677778899999999999954432 2222 4689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~ 469 (796)
-|++..|..+-+.|.+ +.|-..+-......|.-
T Consensus 515 ~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 515 VGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred hcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 9999999999988877 45776666666655543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.40 E-value=7.2 Score=31.89 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555441 113333333444455555666666555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=83.00 E-value=18 Score=33.57 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=65.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHH-HHHHHH
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPELE-ALLRVS 467 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd---~~ty~-~LI~~~ 467 (796)
..++-..|+.++|..++++-...|+... ...+--+-..+...|+.++|..++++....- |+ ..... .+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 4456678999999999999999887665 3345556677888999999999999887653 44 22222 222356
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003768 468 VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~ 485 (796)
...|+.++|...+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 788999999998876544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=18 Score=41.05 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~----ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...++.+-.+|.+.|++++|...|++-.+. .|+.. +|..+-.+|.+.|+.++|.+.++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555556666665555554332 34432 344455555555665555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=81.91 E-value=3.1 Score=34.71 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-cccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI-NPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi-~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
.+|+.+-..|...|++++|...|++..+. |- .|+ ..+|+.+=..|...|+.++|.+.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566666666666666666666654422 10 011 23334444444444555555554443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=15 Score=39.11 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=69.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-c---ccHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-L---RSYGP 427 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~---~ty~~ 427 (796)
...+.-+.+.|++++|...|+.+...- |+. .++-.+-..|...|+.++|...|+.+.+. .|+ . ..+--
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 555555566799999999999998763 432 46677888999999999999999999865 133 1 22222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+...+-..|+.++|..+|+...+.-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455668899999999999888753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.41 E-value=17 Score=42.54 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHH-----H-HHCCCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKR-----M-KSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~-----M-~~~gi~P---d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
-..++..+|+.++|.++.-+ | .+-+-+. +..+.-.+-..+-+...+..|-++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 34555667777777765431 1 1112222 2334443444455567788899999888542 467
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++.....+++++|+.+-++..+-
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc
Confidence 78888999999999998876653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 796 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-122 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-115 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 5e-22
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
++ + + L TP+ DD + + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPP 744
+ R+ E + +SF + + +MPP
Sbjct: 144 EWKRFIEERLLMYSFVN---DKFMPPD 167
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 1e-17
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATP--------TGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
++ + + L TP DD + + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPP 744
+ R+ E + +SF + +MPP
Sbjct: 144 EWKRFIEERLLMYSFVND---KFMPPD 167
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 95/690 (13%), Positives = 188/690 (27%), Gaps = 222/690 (32%)
Query: 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKK------DRSEQF---QLRVELDMCS 202
E+D+ + + SG ++ K + +K + +F ++ E
Sbjct: 48 KEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103
Query: 203 KRGDVMGAIRLY----DKAQREGIKLGQYHY----------NVLLYLCSSAAVGVVKPAK 248
+ + R+Y D+ + +Y+ LL L + V +
Sbjct: 104 QPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
G+ LG G + + + +
Sbjct: 157 ---GV---------------LG------------SGKTWVA-----LDVCLSYKVQCKMD 181
Query: 309 EKENLGQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + + +L+ L D +W+ + + I+L + +
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQA 232
Query: 367 AFQRGF--EIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
+R + YE CL V + A AF++ K L + R
Sbjct: 233 ELRRLLKSKPYEN-CLLVLLNV----QNAKAWN-----------AFNL--SCKIL-LTTR 273
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLL 480
+ V D A + L+H E+++LL ++ D
Sbjct: 274 FKQ------VT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
L V +P +IA E+ R G W+ W
Sbjct: 318 --LPREVLTTNPRRLSIIA------ESIRDGLATWDN------------------WKHVN 351
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK-------FAESVASIAIKRERNSSFQ 593
++ + ++ L+P E K F S I
Sbjct: 352 CDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL-----LS 393
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP---LIVLHN 650
W D V+ VVN + + +K P I + +
Sbjct: 394 LI--WFD--VIKSDVMV-------------------VVNKLHKYSLVEKQPKESTISIPS 430
Query: 651 --RRITGHKMDQP-VNRALIEKWKNADAL-YATPTGSNDDWYWLYAAIKFKCLLVTNDEM 706
+ ++ ++R++++ + D Y+ Y+ I + + E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPE- 488
Query: 707 RDHTFQLLGNDFFPRW---KERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
R F+++ DF R+ K RH + +Q+ + +I
Sbjct: 489 RMTLFRMVFLDF--RFLEQKIRH--------DSTAWNASGSILNTLQQLKFYKPYI---- 534
Query: 764 KQDYDDEERRWLCVTRANSHMNRQNSYSSP 793
D D + R + +N S
Sbjct: 535 -CDNDPKYERLVNAILDFLPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 78/565 (13%), Positives = 158/565 (27%), Gaps = 173/565 (30%)
Query: 8 NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
+ + +LF L K + + +F+ L+ Q + T
Sbjct: 59 DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
+ RD+ D + K N SR +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
+ LR K + I K+ + +V Q D + +
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189
Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
+ S + E Q +++ + S R D I+L + + ++ + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
L L ++ + + F +S + +T R
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277
Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
D L + ++ D T E + L ++L + E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335
Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
D + +W S++ + E R K + F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390
Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRLR 423
+ L V +N+ SL ++ + ++ VK ++ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY-- 477
+ F ++ + ++++ H + E PE L R V+
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLD 499
Query: 478 --YLLHKLR--TSVRKVSPSTADVI 498
+L K+R ++ S S + +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL 524
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 796 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 3v33_A | 223 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 99.82 | |
| 3v32_B | 185 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.54 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.53 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.48 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.45 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.24 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.22 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.22 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.19 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.18 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.18 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.14 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.12 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.09 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.06 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.06 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.05 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.03 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.02 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.02 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.82 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.35 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.28 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.26 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.24 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.22 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.15 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.12 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.11 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.09 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.06 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.06 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.05 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.02 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.99 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 97.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.88 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.85 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.76 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 97.69 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.57 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.56 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.54 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.4 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.25 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.22 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.05 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.98 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 96.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 96.84 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 96.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.54 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 96.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.5 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.45 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.27 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.18 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.08 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 96.08 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.05 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.01 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 95.99 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 95.98 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 95.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 95.94 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 95.92 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 95.91 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 95.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.85 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 95.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 95.8 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 95.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 95.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 95.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 95.61 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 95.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 95.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.26 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 95.21 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 95.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.09 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 94.95 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 94.76 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 94.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 94.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 94.42 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 94.34 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 94.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 94.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 94.0 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 93.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 93.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 93.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 93.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 93.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 93.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 93.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 92.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 91.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 91.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 91.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 91.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 91.23 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 90.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 89.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 89.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 89.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 89.67 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 89.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 88.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 87.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 87.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 86.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 86.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 85.96 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 85.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 85.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 85.54 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 85.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 84.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 83.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 82.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 81.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 80.12 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-100 Score=877.91 Aligned_cols=476 Identities=49% Similarity=0.875 Sum_probs=450.5
Q ss_pred hhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccc
Q 003768 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (796)
Q Consensus 267 ~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty 344 (796)
+++.++ ++. +...++.+|++ ||+.|++++|.++|++|.+.|+.||.+||
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty---------------------- 64 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHY---------------------- 64 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHH----------------------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHH----------------------
Confidence 345544 554 66679999999 99999999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHhccC---------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 345 KDWSIDNQDADEIRLSEDAKKYA---------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 345 ~~~~~~~~~~~n~lI~~~~k~g~---------~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
|+||++|++.+. +++|+++|++|...|+.||.+|||+||++|++.|++++|+++|++|.+
T Consensus 65 -----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 133 (501)
T 4g26_A 65 -----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA 133 (501)
T ss_dssp -----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999997664 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 416 ~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.++.|++.||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHhchHHHHhccccchhhHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccccCCHHHHHHH
Q 003768 496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF 575 (796)
Q Consensus 496 ~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i~l~~~e~~~l 575 (796)
++|..||.+..+...+...|+...+.+++...|++||+++|.|...|.+..+.+...|.|.+|+..|..++|+++|++.|
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 293 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF 293 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence 99999999988888898899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhcCCcceeeecceeecccCCCCChhhHHHHHHHHHhhCCCCCceEEEeccccccC
Q 003768 576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655 (796)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~nva~~~~~~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~ 655 (796)
.+.|.++++.++.+++|+.|++|+++++|||+||||+|||||++++|++.||..||+.+++..+.+++||||+|++|+.+
T Consensus 294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~ 373 (501)
T 4g26_A 294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG 373 (501)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred CCCCChhhHHHHHHHHHcCceEecCCCCCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeec-
Q 003768 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSD- 734 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~- 734 (796)
..+..|.+++++++|++++.+|+||++||||||||||||+.+|+|||||+||||+|+|+++++|+|||++|||+|++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~ 453 (501)
T 4g26_A 374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 453 (501)
T ss_dssp GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETT
T ss_pred cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCC
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCeeecCCCCceeEEeeCCCceEecccCCCCCCCCCCceEEEEecCCc
Q 003768 735 AGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSH 783 (796)
Q Consensus 735 ~~~~~~~p~~y~~~~q~~~~~~WHiP~~~~~~~~~~~~~WlC~~~~~~~ 783 (796)
++++|++|+||+++||++++++|||||++++++|+| ++|||++|.+++
T Consensus 454 ~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~~~-~~WlC~~r~~~~ 501 (501)
T 4g26_A 454 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAKRSKTP 501 (501)
T ss_dssp TEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTTSC-CCEEEEEECC--
T ss_pred CCceeccCCCCceeeeecCCCceEecccCCCCCCCC-CeeEeeccCCCC
Confidence 469999999999999999888999999999999995 999999998653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=319.24 Aligned_cols=216 Identities=23% Similarity=0.275 Sum_probs=187.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccC
Q 003768 168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (796)
Q Consensus 168 ~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (796)
.+..+..++.+++ ....|+ ..++.+|++|||.|++++|+++|++|.+.|++||.+|||+||++|+..
T Consensus 8 ~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-------- 74 (501)
T 4g26_A 8 PSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-------- 74 (501)
T ss_dssp --------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC--------
Confidence 3555666663333 223455 678999999999999999999999999999999999999999999932
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchh
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (796)
+... . .++.+.++.|.++|++|...|+.||.+||
T Consensus 75 --~~~~---------------------------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty----- 108 (501)
T 4g26_A 75 --EAAT---------------------------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATF----- 108 (501)
T ss_dssp --CCCS---------------------------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-----
T ss_pred --Cchh---------------------------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHH-----
Confidence 2111 1 55677789999999999999999999999
Q ss_pred hhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003768 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (796)
Q Consensus 328 ~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~ 407 (796)
|+||++|++.|++++|+++|++|.+.|+.||..|||+||.+||+.|++++|.
T Consensus 109 ----------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 109 ----------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp ----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 408 ~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
++|++|.+.|+.||..||++||.+||+.|++++|++++++|.+.|+.|+..||++|+..|+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-20 Score=214.44 Aligned_cols=306 Identities=11% Similarity=-0.027 Sum_probs=181.7
Q ss_pred chhhhhhhhhHhhhcCCcchHHHHHHHHHhcC---------CCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003768 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (796)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g---------~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~ 219 (796)
..++.... ...+.++.++|.++|+++.... ...+.+..++..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 151 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 151 ACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 6778899999999999641111 001123455789999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHcc----------------------------ccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 220 EGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 220 ~Gi~pd~~tyn~LL~a~~~~----------------------------~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
.+.. +...+..+...+... ......+.+.|++++|..+|. ++..
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~ 300 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SING 300 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TSTT
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hhhc
Confidence 6421 233333332111000 000112336677777777773 3433
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee-----------------------------
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK----------------------------- 322 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty----------------------------- 322 (796)
. -.+..+|+.++.+ |.+.|++++|..+|++|.+.+- .+..++
T Consensus 301 ~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 301 L--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp G--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred C--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 2 0256667777777 7777777777777777765541 122222
Q ss_pred -----c--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 323 -----L--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 323 -----~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
. .|+.++|..+|+++ ..+..+| +.++..|.+.|++++|.++|++|...+ +.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW-----------IGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 2 55555565555554 2233445 566666666666666666666665543 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--EPE 459 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~pd--~~t 459 (796)
+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.+...|++.|+.++|.++|++|.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 55566666666666666666666666665442 224556666666666666666666666666554 55555 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|..|..+|.+.|++++|.++|+++.+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666666666666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=210.27 Aligned_cols=310 Identities=8% Similarity=-0.069 Sum_probs=247.8
Q ss_pred chhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003768 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (796)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~t 228 (796)
..++..+. ...+.++.++|..+|++|.. ..|+..+|..++.+|.+.|++++|+.+|+.+.. ..++..+
T Consensus 85 ~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 152 (597)
T 2xpi_A 85 DYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSAC 152 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHH
T ss_pred HHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhH
Confidence 34455544 66788999999999999953 345668999999999999999999999998864 3789999
Q ss_pred HHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC--------------CCC-CcchhhhcccCcccccc
Q 003768 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDKLE 293 (796)
Q Consensus 229 yn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~--------------gv~-d~~tyn~LI~~~~~~~~ 293 (796)
++.++.+|. +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 153 ~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 209 (597)
T 2xpi_A 153 RYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV------ 209 (597)
T ss_dssp HHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH------
T ss_pred HHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH------
Confidence 999999999 8999999999995 222221 233 57889999999
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcce----------------------------------------------ec-cch
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM----------------------------------------------KL-NSQ 326 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t----------------------------------------------y~-~g~ 326 (796)
|.+.|++++|.++|++|.+.+ |+... |. .|+
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 999999999999999998865 43211 11 688
Q ss_pred hhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 327 LLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (796)
Q Consensus 327 ~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (796)
+++|..+|+++ .++..+| +.++.+|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|+.
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 288 LRRAEDYLSSINGLEKSSDLL-----------LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HHHHHHHHHTSTTGGGCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhcCCchHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 89999999998 3788888 999999999999999999999998765 34777888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 404 ~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
++|..++++|.+. ...+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.|+.+|.+.|++++|.++|++|
T Consensus 356 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999888754 33567788888888999999999999998887743 235778888889999999999999999888
Q ss_pred HhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 484 RTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 484 ~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
... .+ .+.++.. +..+++.+...+|.
T Consensus 434 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 434 ARL--FQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHT--TTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHh--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 876 33 2335544 56666666655554
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=187.70 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=104.0
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHHcCceEec
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~-~livl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 679 (796)
.--+||||+|||++..+ .|+..+|..+|++|++ .|+. ++|+++..+... .......+++++++|.+.+.|++|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T 100 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (223)
T ss_dssp BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence 45689999999987655 6888999999999998 6776 456666555432 223346788999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEee
Q 003768 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733 (796)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~ 733 (796)
|++ ++||+|||++|...+++|||||+||||..+ ...|.+|.+.|+|.|+|.
T Consensus 101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~e---~p~~k~~Ie~rlI~ytFv 159 (223)
T 3v33_A 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV 159 (223)
T ss_dssp CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHTT---CHHHHHHHHHHEECCEEE
T ss_pred CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCeeeEEEE
Confidence 998 899999999999999999999999999852 346888999999999986
|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-20 Score=179.97 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=107.0
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHHcCceEec
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~-~livl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 679 (796)
.--+||||+|||++.++ .|++.+|..+|++|++ .|+. ++|+++..+... +......+++++++|.+.+.++.|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~T 100 (185)
T 3v32_B 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (185)
T ss_dssp BCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEEC
Confidence 45789999999988665 6899999999999999 6766 456666555432 223356788999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeecCCCeeecC
Q 003768 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMP 742 (796)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~~~~p 742 (796)
|.+ ++||+|||++|...+++|||||+||||..+ ...+.+|.+.|+|.|+|. +..|..|
T Consensus 101 Ps~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv--~d~Fmp~ 166 (185)
T 3v32_B 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV--NDKFMPP 166 (185)
T ss_dssp CCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEE--TTEEECC
T ss_pred CCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEE--CCEEcCC
Confidence 999 899999999999999999999999999863 235677779999999986 5556543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-20 Score=216.85 Aligned_cols=121 Identities=15% Similarity=-0.000 Sum_probs=112.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
|+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|++.|+.||++|||+||.++
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999998874 5899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 433 CNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 433 ~~~G~~-~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.+.+-++.+
T Consensus 211 cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999984 78999999999999999999999999887776544433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-20 Score=220.87 Aligned_cols=150 Identities=9% Similarity=-0.093 Sum_probs=130.6
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHH---cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN---LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~---~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
.+|||+||+| ||+.|++++|.++|++|.+ +|+.||++||
T Consensus 127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-------------------------------- 168 (1134)
T 3spa_A 127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-------------------------------- 168 (1134)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH--------------------------------
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH--------------------------------
Confidence 4689999999 9999999999999998864 5899999999
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~-~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
|+||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.
T Consensus 169 -NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 169 -NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999998877
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG 471 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd------~~ty~~LI~~~~~~G 471 (796)
+.+-++.. +.+ ..++.|+ ..+...|.+.|.+.+
T Consensus 248 R~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 248 RATVLKAV----HKV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHH----HHh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence 76544333 333 3455555 556667778887665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=143.75 Aligned_cols=279 Identities=11% Similarity=-0.035 Sum_probs=212.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~a~~ 237 (796)
...+.++.++|...|+.+.... | .+...|..+..++.+.|++++|++.|+++.+.. |+.. .+..+-..+.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--P-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--c-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 4556778888888888875431 1 133578888888888888888888888888653 4443 4444445555
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|++++|...|. ++... .-.+..+|+.+... +.+.|++++|...|+++.... |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6789999999884 44432 22256678888888 899999999999999988753 4
Q ss_pred Ccc-eec--------cchhhhHHhhhhcC---CC-CcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 003768 318 NGH-MKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (796)
Q Consensus 318 d~~-ty~--------~g~~~~A~~l~~~m---~p-d~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (796)
+.. .|. .++.++|...+.+. .| +..+| ..+...|.+.|++++|.+.|+++.... +
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 432 222 67777887777765 44 34556 778888999999999999999988764 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
.+..+|..+..++.+.|++++|..+|+++.+. ...+..+|+.+...+.+.|+.++|.+.++++.+.. ..+...|..|.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678899999999999999999999998876 34567888889999999999999999999987743 23577888999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|.+.|++++|...|+++.+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999998865
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-12 Score=138.81 Aligned_cols=298 Identities=10% Similarity=-0.050 Sum_probs=236.1
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
.-+.++.++|.+.++.+.... | .+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-.++.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~--p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~-- 78 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK-- 78 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH--
Confidence 346788999999999885532 1 233566666778889999999999999888653 567889999999999
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
+.|++++|...|. ++... .-.+...|..+..+ +.+.|++++|...|+++.+. .|+.
T Consensus 79 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~ 134 (388)
T 1w3b_A 79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDL 134 (388)
T ss_dssp --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTC
T ss_pred --------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 8899999999994 44432 11145568999999 99999999999999999876 4665
Q ss_pred ceec---------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 320 HMKL---------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 320 ~ty~---------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
.... .|+.++|...|.++ .|+ ..+| +.+...|.+.|++++|.+.|+++.... +-+
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 202 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW-----------SNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 5433 68999999999887 443 4566 888899999999999999999998754 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI 464 (796)
...|..+...+...|++++|...+++.... .| +..+|..+...|.+.|+.++|.+.|+.+.+.. | +...|..+.
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 278 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 778999999999999999999999988765 34 46788889999999999999999999998864 4 467899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHH
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAAR 509 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~ 509 (796)
..+.+.|++++|..+|+++.+. .+ .+.++.. ...+++.+...+
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876 33 2334444 444444444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-12 Score=139.04 Aligned_cols=285 Identities=9% Similarity=-0.051 Sum_probs=224.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|..+|+.+.... ..+...|..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 5567899999999999986542 2346899999999999999999999999999765 345788999999999
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc---chhhhcccC------ccccccccccCChHHHHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~---~tyn~LI~~------~~~~~~~~~~g~~~~A~~lf~e 309 (796)
+.|++++|...|. ++... .-.+. ..|..++.. ......+.+.|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999994 44432 22233 445544221 0001227889999999999999
Q ss_pred HHHcCCCCC-cceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHH
Q 003768 310 KENLGQFSN-GHMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (796)
Q Consensus 310 M~~~Gi~Pd-~~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (796)
+.+.. |+ ...+. .|+..+|...|.++ ..+..+| ..+...|.+.|++++|.+.|+
T Consensus 169 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 169 ILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH-----------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHH
Confidence 98753 33 22332 88899999999887 4556677 889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHHcCChH
Q 003768 377 KMCLDEVPMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 377 ~M~~~gi~pd~~ty~~L------------I~~~~~~g~~~~A~~l~~~M~~~gi~Pd-----~~ty~~LI~~~~~~G~~~ 439 (796)
++.... +.+...+..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|+.+
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998643 2344555555 78899999999999999999874 455 447888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|.+.++.+.+.. ..+...|..+..+|...|++++|...|++..+.
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999988753 236789999999999999999999999999875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=140.59 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++. ..|+.++|...|. ++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~a 86 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KV 86 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 45789999999999999999999999999753 457889999999998 8899999999994 44
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc------------------------eeccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH------------------------MKLNS 325 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~------------------------ty~~g 325 (796)
... +-.+...|..+... |.+.|++++|...|+++.+.. |+.. .+..|
T Consensus 87 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 87 IQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 443 22256678889889 999999999999999998754 5432 11178
Q ss_pred hhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 326 QLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 326 ~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
+..+|...|+++ ..+...+ ..+...|.+.|++++|.++|+++.... +.+..+|..+..+|...|
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 889999999887 3455556 889999999999999999999998753 457899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHH
Q 003768 402 DGDMAFDMVKRMKSLGINPRLRS-YGPA------------LSVFCNNGDVDKACSVEEHMLEHGVYPE-----EPELEAL 463 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~~t-y~~L------------I~~~~~~G~~~~A~~l~~~M~~~gv~pd-----~~ty~~L 463 (796)
++++|...|+++.+. .|+... +..+ ...|.+.|+.++|.++|+.+.+.. |+ ...|..+
T Consensus 226 ~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 226 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERI 301 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHH
Confidence 999999999999865 455443 3333 688999999999999999998843 65 4578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
...+.+.|++++|..+++++... .+ .+..+.. ...+...+...+|.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999998875 33 3344444 44455555544443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-12 Score=139.46 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=91.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.++.++|.+.++.+ ..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 12 ll~~~~~ld~A~~fae~~----------~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae- 72 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----------NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----------CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH-
Confidence 344677789999999999 122 59999999999999999999999763 58889999999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|...+. |..+ ..++..+.+.|+.+ |.+.|+++++.++++ .|+
T Consensus 73 ---------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn 121 (449)
T 1b89_A 73 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN 121 (449)
T ss_dssp ------------------------------------------------------------CHHHHTTTTT-------CC-
T ss_pred ---------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCc
Confidence 7899999999773 5444 34467789999999 999999999988875 266
Q ss_pred cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (796)
Q Consensus 319 ~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (796)
..+| +.+-+.|...|.+++|..+|..+ ..|..|+.+++
T Consensus 122 ~~a~---------------------------------~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 122 NAHI---------------------------------QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ------------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 6566 88888999999999999999977 37899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ 478 (796)
+.|++++|.+.+.++ -+..+|..++.+|+..|+++.|...... +..+......|+..|.+.|++++|..
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 999999999999887 2778999999999999999999655443 33344446678899999999999999
Q ss_pred HHHHHHhC
Q 003768 479 LLHKLRTS 486 (796)
Q Consensus 479 ll~~M~~~ 486 (796)
+|+.-...
T Consensus 229 lLe~aL~l 236 (449)
T 1b89_A 229 MLEAALGL 236 (449)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhCC
Confidence 88877644
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=123.26 Aligned_cols=286 Identities=10% Similarity=0.006 Sum_probs=215.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++..+|...|+++.... |+...|..+..+|.+.|++++|+..|+++.+.+ +-+...|..+..++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 84 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE- 84 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence 3456789999999999997643 567999999999999999999999999999765 445778888999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh-----------------------------------
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY----------------------------------- 283 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~----------------------------------- 283 (796)
+.|++++|...|. .+..... .+......
T Consensus 85 ---------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 85 ---------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred ---------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 8899999999984 3322211 00000000
Q ss_pred ------------------------------------------cccCccccccccccCChHHHHHHHHHHHH-----cCCC
Q 003768 284 ------------------------------------------GSSPMIDKLESNSSYRFDDLDSTFNEKEN-----LGQF 316 (796)
Q Consensus 284 ------------------------------------------LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-----~Gi~ 316 (796)
+..+ .....+.+.|++++|..+|+++.. ..-.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG-LSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH-HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0000 000002248999999999999988 4323
Q ss_pred CCcc--------eec--------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHH
Q 003768 317 SNGH--------MKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (796)
Q Consensus 317 Pd~~--------ty~--------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~ 377 (796)
|+.. .+. .|+..+|...+.+. .|+...| ..+...|...|++++|.+.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-----------IYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHTSSCCTTGGGHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH-----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 4332 111 78888998888886 5554455 7788889999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003768 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 378 M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
+.... +.+..+|..+...+...|++++|...+++..+.. ..+...|..+...|...|+.++|.++++.+.+.. ..+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 88754 3466788999999999999999999999988763 2356778888888999999999999999988753 2256
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|..+...|.+.|++++|...++++...
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78888889999999999999999988664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-09 Score=111.19 Aligned_cols=256 Identities=8% Similarity=-0.059 Sum_probs=195.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++.++|..+|+++..... .+...|..+...+.+.|++++|...|+++.+.. +.+..++..+-..+.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAP-------EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT- 100 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence 45577899999999999866431 245788899999999999999999999998763 346778888888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhc--------------cc-CccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~L--------------I~-~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...+. +.... .-.+...+..+ .. . +...|++++|
T Consensus 101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 157 (327)
T 3cv0_A 101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC 157 (327)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence 7899999999995 33332 11122223332 11 2 6677888999
Q ss_pred HHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC
Q 003768 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (796)
...++++.+..- .+...+ ..+...|.+.|++++|.++|+++....
T Consensus 158 ~~~~~~~~~~~~-~~~~~~---------------------------------~~la~~~~~~~~~~~A~~~~~~~~~~~- 202 (327)
T 3cv0_A 158 RTLLHAALEMNP-NDAQLH---------------------------------ASLGVLYNLSNNYDSAAANLRRAVELR- 202 (327)
T ss_dssp HHHHHHHHHHST-TCHHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhCC-CCHHHH---------------------------------HHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 999888876531 122222 677888899999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--------
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-------- 455 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-------- 455 (796)
+.+..+|..+...+...|++++|...|+++.+.. ..+..+|..+...|.+.|+.++|.+.++...+..-..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3467889999999999999999999999987753 2356778888899999999999999999887653111
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 456 ---EEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 456 ---d~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
+...|..+..++.+.|+.++|..++++
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 367888999999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-09 Score=109.70 Aligned_cols=259 Identities=9% Similarity=-0.071 Sum_probs=206.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|.++|+.+...... +...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..+.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPF-------HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL- 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence 344568999999999998654321 22466677888899999999999999999753 235667777777777
Q ss_pred cccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..| +.++|...|. +.... .-.+...|..+... +...|++++|...|++..... |
T Consensus 102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~ 156 (330)
T 3hym_B 102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K 156 (330)
T ss_dssp ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence 678 8999999995 33332 21255668888888 999999999999999887763 2
Q ss_pred C-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 318 N-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (796)
Q Consensus 318 d-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (796)
+ ...+ ..+...|...|++++|.+.|++..... +.+..++..+...
T Consensus 157 ~~~~~~---------------------------------~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 157 GCHLPM---------------------------------LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp TCSHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred ccHHHH---------------------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 2 1222 557788899999999999999998764 4568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC--------CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g--------i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
+...|++++|...+++..+.. ...+..+|..+-..|.+.|+.++|.+.++...+.. ..+...|..+-..|.
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 999999999999999987641 13346788899999999999999999999998764 235678899999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003768 469 EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~ 486 (796)
+.|+.++|...|++..+.
T Consensus 282 ~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHTCHHHHHHHHHTTTTT
T ss_pred HhccHHHHHHHHHHHHcc
Confidence 999999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=117.49 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++. +.|++++|...|. +..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al 125 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCL 125 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHH
Confidence 3567788889999999999999999999764 446778888888888 8899999999995 443
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--cchhhhHHhhhhcCCCCcccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
.. .-.+...|..+... +...|++++|...|+++.... |+..... .+..... ..+.. .+
T Consensus 126 ~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~-~~---- 185 (368)
T 1fch_A 126 EL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG------AGLGP-SK---- 185 (368)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------
T ss_pred hc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhh------hcccH-HH----
Confidence 32 22256678888888 999999999999999998864 3322110 0000000 00000 00
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
. .+..+...|++++|.++|+++....-. ++..++..+...|...|++++|...|+++.+.. ..+..+|..
T Consensus 186 -------~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 186 -------R-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp -------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -------H-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 1 233344888899999999988875321 157888889999999999999999998887652 234677888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...+.+.|+.++|.+.|+.+.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999999999998887753 235678888888999999999999999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=118.52 Aligned_cols=255 Identities=9% Similarity=-0.066 Sum_probs=188.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|..+|+.+.... ..+...|..+...|.+.|++++|+..|+++.+.. +.+..+|..+-.+|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4567789999999999986643 1245899999999999999999999999999764 345888999999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc----------chhhhcccCccccccccccCChHHHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~----------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
..|++++|...|. ++... .-.+. ..++.+... +...|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33221 00011 112334555 888889999999998
Q ss_pred HHHHcCCCCC---cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 309 EKENLGQFSN---GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 309 eM~~~Gi~Pd---~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
++.... |+ ...+ ..+...|.+.|++++|.+.|++..+.. +.
T Consensus 202 ~al~~~--p~~~~~~~~---------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 245 (365)
T 4eqf_A 202 EAAHQN--GDMIDPDLQ---------------------------------TGLGVLFHLSGEFNRAIDAFNAALTVR-PE 245 (365)
T ss_dssp HHHHHS--CSSCCHHHH---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhC--cCccCHHHH---------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 887763 32 2223 677788888999999999999888753 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC---C--------C
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---V--------Y 454 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g---v--------~ 454 (796)
+..+|+.+..+|...|++++|...|++..+.. ..+..+|..+-..|.+.|+.++|.+.|+...+.. . .
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 67889999999999999999999999887652 2236778888888999999999999998887632 0 0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 455 PEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 455 pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.+...|..|-.++...|+.+.+..+..+
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 1357788888888888988877766543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=117.68 Aligned_cols=246 Identities=9% Similarity=-0.030 Sum_probs=189.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+-.++. +.|++++|...|. +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34568888899999999999999999999764 346888999999998 8899999999995 44
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
... .-.+...|..+... |...|++++|...|+++.... |+........ ......+
T Consensus 126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~----- 180 (365)
T 4eqf_A 126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-----------KGSPGLT----- 180 (365)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHHhhh-----------ccchHHH-----
Confidence 332 22256678889888 999999999999999998753 3321110000 0000111
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|.+.|++++|.++|+++....-. ++..+|..+...|...|++++|...|++..+.. ..+..+|..+
T Consensus 181 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 181 ------RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44577888999999999999999886422 268899999999999999999999999988762 3457789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...|.+.|+.++|.+.|+...+.. ..+...|..|-..|.+.|++++|...|++....
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998754 224788999999999999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-08 Score=105.97 Aligned_cols=279 Identities=8% Similarity=-0.066 Sum_probs=203.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++.++|...|+...... ..+...|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 3456789999999999986642 1235788999999999999999999999999763 235678888888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC---CCcchhhhc------------ccCccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv---~d~~tyn~L------------I~~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...|. +.... .- .+...+..+ ... +...|++++|
T Consensus 83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A 139 (359)
T 3ieg_A 83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA 139 (359)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence 7899999999995 33332 11 122223333 344 8889999999
Q ss_pred HHHHHHHHHcCCCCCc-ceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 304 DSTFNEKENLGQFSNG-HMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~-~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
..+|+++.+.. |+. ..+. .|+..+|...+.+. ..+...| ..+...|...|++++
T Consensus 140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-----------YKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH-----------HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHH
Confidence 99999998763 332 2222 77888888888776 3344445 777788888889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEASLT------------AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFC 433 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~------------~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~-----ty~~LI~~~~ 433 (796)
|.+.|++..+.. +.+..++. .+...+.+.|++++|...+++..+.. |+.. .|..+-..+.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999988887643 22333333 23566888899999999998887653 4432 2444567788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|+.++|.+.++...+.. ..+...|..+-..|.+.|++++|...|++..+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8899999999998887753 236778888888888999999999999888876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-09 Score=112.95 Aligned_cols=242 Identities=13% Similarity=0.022 Sum_probs=146.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d 277 (796)
..-..|++..|+..++.... ..|+. ...-.+..+|. ..|+++.|...+. .. .-++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~~ 64 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAPE 64 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCHH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CChh
Confidence 33445666666665554321 22322 23333445555 4566666665552 10 1113
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec---------cchhhhHHhhhhcCCCCcccccccc
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
..++..+... ++..++.++|.+.+++|...++.|+...+. .|+.++|...+++ ..+...+
T Consensus 65 ~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~---- 133 (291)
T 3mkr_A 65 LQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECM---- 133 (291)
T ss_dssp HHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHH----
T ss_pred HHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHH----
Confidence 3445555555 666666666666666666655555543332 4555555555554 2233333
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
..+...|.+.|++++|.+.|+++.... |+...+ .+++..+...|++++|..+|+++.+. ...+...|
T Consensus 134 -------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~ 203 (291)
T 3mkr_A 134 -------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLL 203 (291)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHH
T ss_pred -------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHH
Confidence 667778888888888888888887763 443211 22334444557888888888888776 44566777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~-A~~ll~~M~~~ 486 (796)
+.+-.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 778888888888888888888877653 1256677888888888888765 56788777765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-08 Score=105.26 Aligned_cols=246 Identities=8% Similarity=-0.076 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 345566778899999999999999998764 336778888888888 7899999999995 3333
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
. .-.+...|..+... +...|++++|...|++..... |+.... ...+....++....
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~------- 139 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQL--------GSVNLQADVDIDDL------- 139 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHH--------HHHHhHHHHHHHHH-------
Confidence 2 22255667788888 999999999999999998763 332211 00000000000000
Q ss_pred ccchhhHHHH--HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 352 QDADEIRLSE--DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 352 ~~~~n~lI~~--~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+-.. +...|++++|.++|+++.... +.+..++..+...+...|++++|...++++.+.. ..+..+|..+.
T Consensus 140 ----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 140 ----NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 101022 677889999999999998764 3478899999999999999999999999988763 23567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|.+.++++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988754 235788999999999999999999999998776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=115.41 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=209.8
Q ss_pred hcCCcchHHHHHHHHHh-----cCCCCCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~-----~g~~~~~g--~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (796)
+.++.++|..+|+++.. ....++.. ...+...|..+...+.+.|++++|+.+|+++.+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36788999999999866 22122210 02234688888899999999999999999999765 44788888888
Q ss_pred HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC
Q 003768 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G 314 (796)
++. ..|++++|...+. +.... .-.+...|..+... +...|++++|...|++.....
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999994 43332 22255668888888 999999999999999988753
Q ss_pred CCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 315 QFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (796)
Q Consensus 315 i~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (796)
|+ ...+ ..+...|.+.|++++|.++|+++.... +.+..+|..+
T Consensus 335 --~~~~~~~---------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 335 --PENIFPY---------------------------------IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp --SSCSHHH---------------------------------HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred --hhhHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 22 2222 667788899999999999999988753 3356789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-CCCC----cccHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g-i~Pd----~~ty~~LI~~~~~---~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
...+...|++++|...++++.+.. -.|+ ...|..+...+.. .|+.++|.+.++.+.+.. ..+...+..+..
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 457 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 999999999999999999987642 1122 3388889999999 999999999999998754 235778899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
.|.+.|+.++|...|++..+. .+...
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 999999999999999999887 54443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=106.89 Aligned_cols=233 Identities=11% Similarity=-0.095 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..+..+...+...|++++|+++|+++.+.. +.+...+..+..++. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 567778888899999999999999998654 233445555666666 6789999999994 4443
Q ss_pred cCCCCCcchhhhcccCccccccccccC-ChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g-~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
. .-.+...|..+-.. +...| ++++|...|++..... |+ ...|
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~--------------------------- 128 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTYGPAW--------------------------- 128 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTCTHHH---------------------------
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--CccHHHH---------------------------
Confidence 2 22255667777777 88899 9999999999887653 32 2222
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+...|...|++++|.+.|++..... +.+..++..+...|...|++++|...+++..+.. ..+...+..+.
T Consensus 129 ------~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 200 (330)
T 3hym_B 129 ------IAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVG 200 (330)
T ss_dssp ------HHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred ------HHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 778888999999999999999998764 2345677779999999999999999999988663 34567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~g--------v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|...++...+.. ...+...|..+-..|.+.|++++|...|++....
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999887641 1344678999999999999999999999999876
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-08 Score=105.42 Aligned_cols=276 Identities=10% Similarity=0.039 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
+..|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-..+. ..|+.++|...|. +..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~ 64 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KVI 64 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HHTCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHH
Confidence 4567788889999999999999999998753 335778888888887 7799999999995 443
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC---Cc-c-------------------e-eccch
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS---NG-H-------------------M-KLNSQ 326 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P---d~-~-------------------t-y~~g~ 326 (796)
.. .-.+...|..+-.. +...|++++|...|++..... | +. . . +..|+
T Consensus 65 ~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 65 AL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hh-CCCcchHHHHHHHH------HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 32 11255668888888 999999999999999998763 4 21 1 1 11788
Q ss_pred hhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 327 LLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (796)
Q Consensus 327 ~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~ 402 (796)
..+|...+++. ..+...+ ..+...+.+.|++++|.+.|++..... +.+..++..+...+...|+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCchHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 88898888886 3344445 778888999999999999999998764 5578899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCccc-HH------------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHH
Q 003768 403 GDMAFDMVKRMKSLGINPRLRS-YG------------PALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-----ELEALL 464 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~Pd~~t-y~------------~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-----ty~~LI 464 (796)
+++|...|++..+. .|+... +. .+...+.+.|+.++|.+.++...+.. |+.. .|..+-
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 99999999998765 244322 22 22556889999999999999988754 4432 344567
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
..+...|++++|...+++.... .+ .+.++.. -..+...+...+|.
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999999999876 33 3334333 44444455444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-10 Score=123.93 Aligned_cols=216 Identities=12% Similarity=0.079 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~ 272 (796)
..+.||. +.|++++|.++++++. +..+|..|..++. +.|++++|.+.|.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi------------ 56 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI------------ 56 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH------------
Confidence 3444553 6678999999999993 3459999999999 8899999999994
Q ss_pred CCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccc
Q 003768 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (796)
Q Consensus 273 ~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~ 352 (796)
..+|..+|..++.+ +...|++++|...++...+. .++..+.
T Consensus 57 -ka~D~~~y~~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~------------------------------ 97 (449)
T 1b89_A 57 -KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE------------------------------ 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH------------------------------
Confidence 23466689999999 99999999999966655443 3444445
Q ss_pred cchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 353 ~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+ ..|..|..++
T Consensus 98 ---~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 98 ---TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp --------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred ---HHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 889999999999999998885 378889999999999999999999999976 5899999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchHHH
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAA 508 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~ 508 (796)
.+.|++++|.+.+..+ .+..+|..++.+|+..|+++.|...... ....|+- ..++.-+-+.|...
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 9999999999999988 3889999999999999999999654443 2345553 33344444444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-09 Score=109.26 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=179.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~a~~ 237 (796)
.....++.+.|...++. ...|+..++..+...+++.|+.++|++.++++...++.|+...+..++ .++.
T Consensus 43 ~yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 34455666666653322 135677899999999999999999999999999888777655444444 5666
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|+.++|...+. . -.+...+..+... +.+.|++++|...|+++.+.. |
T Consensus 113 ----------~~g~~~~Al~~l~-------~------~~~~~~~~~l~~~------~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 113 ----------YDQNPDAALRTLH-------Q------GDSLECMAMTVQI------LLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp ----------HTTCHHHHHHHHT-------T------CCSHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HCCCHHHHHHHHh-------C------CCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhC--c
Confidence 7899999999995 1 1155668888888 999999999999999998874 5
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
+...+ .+ ..+++..+...|++++|..+|+++... .+.+...|+.+..++
T Consensus 162 ~~~~~---~l---------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 162 DATLT---QL---------------------------ATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH 210 (291)
T ss_dssp TCHHH---HH---------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred CcHHH---HH---------------------------HHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 54211 00 022334445568999999999999987 467889999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK-ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~-A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
.+.|++++|...|++..+.. +-+..++..++..+...|+.++ |.++++.+.+.. |+... +.+...+.+.+|++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL 284 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence 99999999999999987652 2356678889999999999876 678999888754 66443 33444555555554
Q ss_pred HH
Q 003768 477 YY 478 (796)
Q Consensus 477 ~~ 478 (796)
..
T Consensus 285 ~~ 286 (291)
T 3mkr_A 285 VL 286 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-08 Score=100.12 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-.++. ..|+.++|...+. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 577788889999999999999999999887 78889999988888 8899999999995 2221
Q ss_pred c-CCCC-C----cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 272 ~-~gv~-d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
. .... + ...|..+-.. +...|++++|...|++..... |+
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~--------------------------- 111 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RT--------------------------- 111 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CC---------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--ch---------------------------
Confidence 1 0110 1 3557777778 999999999999999887752 22
Q ss_pred ccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
-..+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...+++..+.. ..+...|
T Consensus 112 -------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 112 -------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 123566788999999999988753 3356688889999999999999999999988763 2356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-..|.+.|+.++|.+.++...+.. ..+...|..+-..+.+.|+.++|...|++..+.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 889999999999999999999998764 234778899999999999999999999988765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-08 Score=111.16 Aligned_cols=84 Identities=12% Similarity=-0.087 Sum_probs=68.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+++.... ..+...|..+...|.+.|++++|++.|+++.+.. +-+...+..+-.++.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 4557789999999999986643 2345899999999999999999999999999764 346778888888888
Q ss_pred cccCCcccCCCCChhhHHHHHh
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFE 260 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~ 260 (796)
..|+.++|...|.
T Consensus 105 ---------~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLS 117 (537)
T ss_dssp ---------HHTCHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH
Confidence 7799999998884
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-08 Score=98.83 Aligned_cols=199 Identities=10% Similarity=-0.034 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+...+...|++++|+++|+++.+.. +.+...+..+-..+. ..|+.++|...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~------------ 94 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEY------------ 94 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHH------------
Confidence 667778888999999999999999998753 334566666666655 556666666655
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC-CcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P-d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
++..+.. | +...+
T Consensus 95 ------------------------------------~~a~~~~--~~~~~~~---------------------------- 108 (252)
T 2ho1_A 95 ------------------------------------RKALASD--SRNARVL---------------------------- 108 (252)
T ss_dssp ------------------------------------HHHHHHC--TTCHHHH----------------------------
T ss_pred ------------------------------------HHHHHHC--cCcHHHH----------------------------
Confidence 3333321 2 12222
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+...|.+.|++++|.++|+++...+..| +...+..+...+...|++++|...+++..+.. ..+...|..+.
T Consensus 109 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 109 -----NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 555666777888888888888877643444 45677778888888888888888888877653 22456777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|...|+.++|.++++.+.+.. ..+...+..+...+.+.|+.++|..+++++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888877643 245667777888888888888888888888776
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.9e-08 Score=95.36 Aligned_cols=202 Identities=9% Similarity=-0.023 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+...+.+.|++++|+++|+.+.+.. +.+...|..+...+. ..|+.++|...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~---------- 66 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR---------- 66 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH----------
Confidence 4678888889999999999999999998753 234666666666666 5566666666663
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
+..... ..+...+
T Consensus 67 --------------------------------------~a~~~~-~~~~~~~---------------------------- 79 (225)
T 2vq2_A 67 --------------------------------------QALSIK-PDSAEIN---------------------------- 79 (225)
T ss_dssp --------------------------------------HHHHHC-TTCHHHH----------------------------
T ss_pred --------------------------------------HHHHhC-CCChHHH----------------------------
Confidence 222221 0112222
Q ss_pred cccchhhHHHHHHhc-cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|... |++++|.++|+++...+..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+
T Consensus 80 -----~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 153 (225)
T 2vq2_A 80 -----NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL 153 (225)
T ss_dssp -----HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred -----HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence 4455666777 777777777777776322333 5567777777777777777777777776542 1235666667
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+.+.|+.++|.++++...+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777888888877777766432135566666777777777888887777777654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-08 Score=105.69 Aligned_cols=255 Identities=9% Similarity=-0.076 Sum_probs=200.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+.+.... ..+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4557789999999999996542 2245789999999999999999999999999764 447888999988888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh---------------cccCccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~---------------LI~~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...|. ++... .-.+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 8899999999995 33332 1112222221 1233 4478889999
Q ss_pred HHHHHHHHHcCCCCC---cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh
Q 003768 304 DSTFNEKENLGQFSN---GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd---~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~ 380 (796)
...|+++.... |+ ...+ ..+...|.+.|++++|.+.|+++..
T Consensus 201 ~~~~~~a~~~~--p~~~~~~~~---------------------------------~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 201 KELFLAAVRLD--PTSIDPDVQ---------------------------------CGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp HHHHHHHHHHS--TTSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcccHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998887753 33 2222 7788899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------
Q 003768 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY------ 454 (796)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~------ 454 (796)
.. +.+..+|..+...+...|++++|...|+++.+.. ..+...|..+-..|.+.|+.++|.+.|+...+..-.
T Consensus 246 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 VR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 53 4467899999999999999999999999988752 235678888999999999999999999988764211
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 455 ----PEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 455 ----pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.....|..|..+|...|+.++|..++.+
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1268899999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-07 Score=102.25 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=196.2
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~~g~~~~~g~~Pd-----~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
++..+|..+|+.+.... |+ .++ ..+|..+-..+...|++++|+..|+.+.+. .|+...|..+-..+.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 46778999999985422 11 111 235667778889999999999999999975 466777777777777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|...|. +.... .-.+...|..+... +...|++++|...|++..... |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 33332 22255668888888 999999999999999988753 32
Q ss_pred -cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 319 -GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 319 -~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
...+ ..+...|.+.|++++|.++|+++.... +.+..++..+...+
T Consensus 343 ~~~~~---------------------------------~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 343 NVYPY---------------------------------IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp CSHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred CHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 2222 678888999999999999999998764 44567899999999
Q ss_pred HhcCChHHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~----------G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
...|++++|...|+++.+.. ..-....+..+-..+.+. |+.++|...|+...+.. ..+...|..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999999987542 111122233344567777 99999999999998754 235788899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|...|.+.|+.++|...|++..+.
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999886
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-07 Score=92.31 Aligned_cols=179 Identities=8% Similarity=-0.048 Sum_probs=140.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...|+++.... |+ ...+ ..+...|.+.|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID--PSSADAH---------------------------------AALAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC--TTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CChHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 777888888888888887653 33 2233 66778889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
++|+++.... +.+..++..+...|...|++++|.++++++.+.+..| +...|..+...+...|+.++|.+.+++..+.
T Consensus 92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988764 3478899999999999999999999999988744455 4567788888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
. ..+...+..+...|...|+.++|..+|+++... .+. +..+.. ...+...+...++.
T Consensus 171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 4 235788999999999999999999999999875 333 334433 44444455544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-07 Score=89.76 Aligned_cols=164 Identities=9% Similarity=-0.000 Sum_probs=134.5
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
.|..+... +...|++++|..+|++..+.. |+ ...+ ..+
T Consensus 10 ~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---------------------------------~~l 48 (225)
T 2vq2_A 10 IKTQLAME------YMRGQDYRQATASIEDALKSD--PKNELAW---------------------------------LVR 48 (225)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHHHH---------------------------------HHH
T ss_pred HHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccchHHH---------------------------------HHH
Confidence 34455555 778888999999998887753 33 2233 667
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
...|...|++++|.++|++..... +.+..++..+...+... |++++|..+++++.+.+..|+ ...|..+...+...|
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 788899999999999999988754 44788999999999999 999999999999988433343 567888888999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.++++.+.. ..+...+..+...+.+.|+.++|..++++....
T Consensus 128 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999998754 234788899999999999999999999998876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-08 Score=100.75 Aligned_cols=84 Identities=11% Similarity=-0.074 Sum_probs=60.4
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.++.++|...|+.+....... ...+...|..+...|.+.|++++|+..|+++.+.. +.+...|..+-..+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----- 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT----- 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH-----
Confidence 456778999999986542110 11234788888899999999999999999998764 235677777777666
Q ss_pred CcccCCCCChhhHHHHHh
Q 003768 243 VVKPAKSGSGMRTLDTFE 260 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~ 260 (796)
..|++++|...|.
T Consensus 89 -----~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 89 -----QAGNFDAAYEAFD 101 (275)
T ss_dssp -----HTTCHHHHHHHHH
T ss_pred -----HccCHHHHHHHHH
Confidence 5667777777663
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-07 Score=94.12 Aligned_cols=222 Identities=9% Similarity=-0.090 Sum_probs=170.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc
Q 003768 202 SKRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (796)
Q Consensus 202 ~k~G~~~~A~~lf~~M~~~Gi~---pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (796)
...|++++|+..|+++.+.... .+..+|..+-..+. ..|++++|...|. +.... .-.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMP 77 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcH
Confidence 3457899999999999976421 24567777777777 7899999999995 43332 22256
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|..+-.. +...|++++|...|++..+.. |+ ...+ ..
T Consensus 78 ~~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~ 116 (275)
T 1xnf_A 78 EVFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PTYNYAH---------------------------------LN 116 (275)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCTHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHccCHHHHHHHHHHHHhcC--ccccHHH---------------------------------HH
Confidence 678888888 999999999999999988753 22 2222 77
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...|.+.|++++|.+.|+++... .|+...+..++..+...|+.++|...+++.... ..++...+. ++..+...++
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 192 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNIS 192 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcC
Confidence 788899999999999999999875 355555566666777889999999999887765 234444444 7777888889
Q ss_pred hHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~--p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++|.+.+....+.... | +...|..+-..|.+.|+.++|...|++....
T Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999887654311 1 1577888999999999999999999999876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=9e-06 Score=84.05 Aligned_cols=226 Identities=12% Similarity=-0.024 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
..++..+=..|.+.|++++|+..|.+..+.+ +...+..|-..+.... ...|+.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777778889999999999999999843 4566666666666210 02789999999995 333
Q ss_pred ccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
+. + +...+..+-.. |.. .+++++|...|++..+.+ +...+
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------------------ 113 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------------------ 113 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------------------
Confidence 22 1 44445555445 666 899999999999888775 22222
Q ss_pred cccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 003768 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi 418 (796)
..+-..|.+ .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|...|++..+.+
T Consensus 114 ---------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 114 ---------ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ---------HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ---------HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 445556666 899999999999999876 67788888888888 999999999999988774
Q ss_pred CCCcccHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 419 ~Pd~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
+...+..+-..|.. .++.++|.+.|+...+.+ | ...+..|-..|.. .++.++|...|++..+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45667777788888 999999999999998875 3 6777788888888 89999999999998877
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-07 Score=94.10 Aligned_cols=245 Identities=8% Similarity=-0.044 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
+..+|..+-..+...|++++|+.+|+++.+. .-......+..+-..+. ..|++++|...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-- 93 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN-- 93 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence 3467888889999999999999999999863 22333455666666666 6788888887774
Q ss_pred ccCchhhhcc------CCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhh
Q 003768 263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (796)
Q Consensus 263 ~~~s~em~~~------~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~ 335 (796)
+.... ..-+ ....|..+... +...|++++|...|++..+.. .
T Consensus 94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~--------------------~ 142 (311)
T 3nf1_A 94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIR--------------------E 142 (311)
T ss_dssp -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHH--------------------H
T ss_pred -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHH--------------------H
Confidence 22111 0011 22335555555 556666666666665554321 0
Q ss_pred cC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003768 336 RG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF 407 (796)
Q Consensus 336 ~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~ 407 (796)
.. .++... .......+-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|.
T Consensus 143 ~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 143 KVLGKDHPD-------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHCTTCHH-------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCCCChH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00 000000 0011223334455556666666666555442 1112 2234555556666666666666
Q ss_pred HHHHHHHHC-------CCCCCcccHHHHHHHHH-------HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 408 DMVKRMKSL-------GINPRLRSYGPALSVFC-------NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 408 ~l~~~M~~~-------gi~Pd~~ty~~LI~~~~-------~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
..++++.+. ...+........+..+. ..+...+|...+....... ..+..+|..|...|.+.|+.
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCH
Confidence 666555432 12222222222222222 2222333333333332211 12345677888888899999
Q ss_pred hHHHHHHHHHHh
Q 003768 474 DRVYYLLHKLRT 485 (796)
Q Consensus 474 ~~A~~ll~~M~~ 485 (796)
++|..+|++..+
T Consensus 295 ~~A~~~~~~al~ 306 (311)
T 3nf1_A 295 EAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-07 Score=90.06 Aligned_cols=217 Identities=10% Similarity=0.027 Sum_probs=168.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL 232 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~G--i~pd----~~tyn~L 232 (796)
.....++.++|...|++..... .+. ..|..+-..|.+.|++++|+..|+.+.... ..|+ ...|..+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDI------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccH------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3446788999999999987665 333 899999999999999999999999988542 2223 5777888
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
-..+. +.|+.++|...|. +.... .+. -.. +.+.|++++|...++++..
T Consensus 86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~---~~~------~~~------~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE---HRT------ADI------LTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHH----------HTTCHHHHHHHHH-------HHHHH---CCC------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HcccHHHHHHHHH-------HHHhc---Cch------hHH------HHHHhHHHHHHHHHHHHHH
Confidence 88888 7899999999995 33221 000 112 6677888999999988876
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (796)
.. |+.. ..| ..+...+...|++++|.+.|++..... +.+..+|..
T Consensus 134 ~~--~~~~---------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 178 (258)
T 3uq3_A 134 VN--PEKA---------------------EEA-----------RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN 178 (258)
T ss_dssp CC--HHHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cC--cchH---------------------HHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 52 2211 111 667778899999999999999998754 446889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+...|...|++++|...|++..+.. ..+...|..+-..+.+.|+.++|.+.++...+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988763 234677888889999999999999999987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-07 Score=91.30 Aligned_cols=200 Identities=16% Similarity=0.084 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-..+. +.|+.++|...|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~---------- 80 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFY---------- 80 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH----------
Confidence 33677777788889999999999999988642 234555555555555 455555555555
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
++..... |+ ...+
T Consensus 81 --------------------------------------~~~~~~~--~~~~~~~-------------------------- 94 (243)
T 2q7f_A 81 --------------------------------------DKALELD--SSAATAY-------------------------- 94 (243)
T ss_dssp --------------------------------------HHHHHHC--TTCHHHH--------------------------
T ss_pred --------------------------------------HHHHHcC--CcchHHH--------------------------
Confidence 3333321 21 2222
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++.+.. ..+...+..+
T Consensus 95 -------~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 95 -------YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -------HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 556667778888888888888887654 3467788888888999999999999998887652 2356677778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+.+.|+.++|.+.++...+.. ..+...|..+...|.+.|+.++|...+++..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888889999999999998887754 235778888889999999999999999998876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-07 Score=89.79 Aligned_cols=187 Identities=7% Similarity=-0.054 Sum_probs=133.4
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|..+-.. +...|++++|..+|++..... |+ ...+ ..
T Consensus 24 ~~~~~~a~~------~~~~~~~~~A~~~~~~~l~~~--~~~~~~~---------------------------------~~ 62 (243)
T 2q7f_A 24 MTGGQQMGR------GSEFGDYEKAAEAFTKAIEEN--KEDAIPY---------------------------------IN 62 (243)
T ss_dssp ------------------------CCTTHHHHHTTC--TTCHHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHhhCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HH
Confidence 345555556 888899999999999887743 43 3333 66
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...|.+.|++++|.+.|++..... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+...+.+.|+
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 7788899999999999999988764 3478899999999999999999999999988763 3456778888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
.++|.++++.+.+.. ..+...+..+...+.+.|++++|...|++.... .+. +.++.. ...+...+...+|.
T Consensus 141 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 141 PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHH
Confidence 999999999988754 236788899999999999999999999998876 333 334433 44555555544443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-05 Score=85.48 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCh-------hhHHHHHhhhccCchhhhccCCCCCcch
Q 003768 208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (796)
Q Consensus 208 ~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-------~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (796)
++|+.+|+++.... +-+...|..+...+...+. ...+.|++ ++|..+|. .......-.+...
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~~~~~-------rAl~~~~p~~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAISTLLKKNMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHHHHHH-------HHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHHHHHH-------HHHHHhCcccHHH
Confidence 68899999998642 3456677777766642100 00023665 88999995 3332101114456
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~ 360 (796)
|..+... +.+.|++++|..+|++..+. .|+.... .| ..+..
T Consensus 102 ~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~~--------------------~~-----------~~~~~ 142 (308)
T 2ond_A 102 YFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPTL--------------------VY-----------IQYMK 142 (308)
T ss_dssp HHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTHH--------------------HH-----------HHHHH
T ss_pred HHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCccH--------------------HH-----------HHHHH
Confidence 8888888 88999999999999998874 4543210 12 77778
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~-~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
.+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+.. .-+...|..++..+.+.|+.+
T Consensus 143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 8889999999999999998764 334455554444432 3699999999999987652 225677888888999999999
Q ss_pred HHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~g-v~p--d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|..+|+...... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999873 455 4678999999999999999999999999876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=87.13 Aligned_cols=201 Identities=10% Similarity=-0.050 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHH
Q 003768 223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (796)
Q Consensus 223 ~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (796)
+++...+..+-..+. ..|++++|...|. +.... .-.+...|..+-.. +.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence 345566666666666 7899999999994 33321 11255567777777 889999999
Q ss_pred HHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhc-----------cCHHHH
Q 003768 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----------YAFQRG 371 (796)
Q Consensus 303 A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~-----------g~~~~A 371 (796)
|...|++..+.. |+.... | ..+-..|.+. |++++|
T Consensus 58 A~~~~~~al~~~--P~~~~a---------------------~-----------~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 58 ALENGKTLVART--PRYLGG---------------------Y-----------MVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHC--TTCHHH---------------------H-----------HHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHH---------------------H-----------HHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 999999887753 433211 1 4555666677 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...|++..+.. +-+...|..+-..+...|++++|...|++..+.. .+...+..+-..|...|+.++|...|+...+.
T Consensus 104 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 104 LSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 3367889999999999999999999999998887 67888888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
. +-+...+..+-..+.+.|+.++|...|++...
T Consensus 181 ~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 181 A-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp S-TTCHHHHHHHHHHHTC----------------
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 4 23567788888999999999999998887543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=85.04 Aligned_cols=198 Identities=14% Similarity=-0.043 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++. ..|+.++|...|. ..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~a 65 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------TL 65 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HH
Confidence 34678888889999999999999999998653 335677777777777 7899999999995 33
Q ss_pred hccCCCCCcchhhhcccCcccccccccc-----------CChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCC
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSS-----------YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~-----------g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~ 338 (796)
... .-.+...|..+-.. +... |++++|...|++..+.. |+...
T Consensus 66 l~~-~P~~~~a~~~lg~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~----------------- 119 (217)
T 2pl2_A 66 VAR-TPRYLGGYMVLSEA------YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAP----------------- 119 (217)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHH-----------------
T ss_pred HHh-CCCcHHHHHHHHHH------HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHH-----------------
Confidence 221 11144556666666 7777 88888988888777652 33211
Q ss_pred CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003768 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 339 pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi 418 (796)
.| ..+-..|...|++++|.+.|++..+.. .+...+..+-.+|...|++++|...|++..+..
T Consensus 120 ----~~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 181 (217)
T 2pl2_A 120 ----LH-----------LQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA- 181 (217)
T ss_dssp ----HH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred ----HH-----------HHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 12 556677889999999999999998877 788999999999999999999999999988752
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 419 ~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+-+...+..+-..+.+.|+.++|.+.|+...
T Consensus 182 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp TTCHHHHHHHHHHHTC---------------
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2345677778888999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-06 Score=83.88 Aligned_cols=232 Identities=10% Similarity=-0.058 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC
Q 003768 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (796)
Q Consensus 194 yn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~ 273 (796)
+-..-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++. ..|++++|...+. +.....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~~~ 67 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYY----------ELAKYDLAQKDIE-------TYFSKV 67 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTTS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------HHhhHHHHHHHHH-------HHHhcc
Confidence 4445567889999999999999998753 223446777777777 7899999999995 444321
Q ss_pred CCCCc--chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 274 DMDNN--GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 274 gv~d~--~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
.-++. ..|..+-.. +...|++++|...|++..+.. |+.. ..|
T Consensus 68 ~~~~~~~~~~~~lg~~------~~~~~~~~~A~~~~~~a~~~~--~~~~---------------------~~~------- 111 (272)
T 3u4t_A 68 NATKAKSADFEYYGKI------LMKKGQDSLAIQQYQAAVDRD--TTRL---------------------DMY------- 111 (272)
T ss_dssp CTTTCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHS--TTCT---------------------HHH-------
T ss_pred CchhHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--cccH---------------------HHH-------
Confidence 11121 236777777 899999999999999887752 2211 112
Q ss_pred ccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHH
Q 003768 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALS 430 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~ 430 (796)
..+-..|.+.|++++|.+.|++.... -+-+..+|..+...+...+++++|...|++..+. .|+ ...|..+-.
T Consensus 112 ----~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 112 ----GQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRAR 184 (272)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----HHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 67788899999999999999988876 2446677777773455566999999999998875 344 566666777
Q ss_pred HHHHcCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~---~~~A~~l~~~M~~~g-v~pd------~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|+ .++|...+++..+.. -.|+ ...|..|-..|.+.|+.++|...|++..+.
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777888 888888888876541 1233 257788888899999999999999999876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=82.32 Aligned_cols=228 Identities=8% Similarity=-0.083 Sum_probs=166.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLC 236 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd--~~tyn~LL~a~ 236 (796)
...+.++.++|...|++..+... + +...|..+...|.+.|++++|+..|++....+-.|+ ...|..+-..+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKY--N-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--C-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC--C-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34567889999999999865431 1 124788888899999999999999999998432222 33477777777
Q ss_pred HccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC
Q 003768 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (796)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~ 316 (796)
. ..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+. .
T Consensus 85 ~----------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~--~ 138 (272)
T 3u4t_A 85 M----------KKGQDSLAIQQYQ-------AAVDR-DTTRLDMYGQIGSY------FYNKGNFPLAIQYMEKQIRP--T 138 (272)
T ss_dssp H----------HTTCHHHHHHHHH-------HHHHH-STTCTHHHHHHHHH------HHHTTCHHHHHHHHGGGCCS--S
T ss_pred H----------HcccHHHHHHHHH-------HHHhc-CcccHHHHHHHHHH------HHHccCHHHHHHHHHHHhhc--C
Confidence 7 7899999999995 33322 11255667778777 99999999999998876554 2
Q ss_pred CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (796)
Q Consensus 317 Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (796)
|+.... | ..+-..+...+++++|.+.|++..+.. +.+...+..+...
T Consensus 139 ~~~~~~---------------------~-----------~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 139 TTDPKV---------------------F-----------YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARA 185 (272)
T ss_dssp CCCHHH---------------------H-----------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCcHHH---------------------H-----------HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 322111 1 233313344559999999999998753 3347788888899
Q ss_pred HHhcCC---hHHHHHHHHHHHHCC-CCCCc------ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 397 AMSMGD---GDMAFDMVKRMKSLG-INPRL------RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 397 ~~~~g~---~~~A~~l~~~M~~~g-i~Pd~------~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+...|+ .++|...+++..+.. -.|+. ..|..+-..|.+.|+.++|.+.|+...+..
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 998888 888999998876541 22442 567778888999999999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=76.17 Aligned_cols=156 Identities=15% Similarity=0.049 Sum_probs=123.4
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|+++.... |+. ...| ..+...+...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~~---------------------~~~~-----------~~~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD--AFD---------------------VDVA-----------LHLGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT--SCC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--ccC---------------------hHHH-----------HHHHHHHHHcCCHHHHHH
Confidence 667788888888777654431 211 1122 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv 453 (796)
+|+++.... +.+..++..+...+...|++++|.+.++++.+.. ..+...+..+...+...|+.++|.++++...+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988753 4467888999999999999999999999987762 3456777888888999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...+..+...+...|+.++|...+++....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345778889999999999999999999887664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-05 Score=71.66 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=110.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++...+ ..+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 667788899999999999999998754 3467889999999999999999999999988763 23566788888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|+.++|.++++++.+.. ..+...+..+...+.+.|+.++|...|.++...
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998764 235778889999999999999999999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-05 Score=77.26 Aligned_cols=217 Identities=13% Similarity=-0.006 Sum_probs=165.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k----~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
....++.++|.+.|+...+.+ +...+..+-..|.+ .|++++|+..|++..+.+ +...+..|=..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345678899999999986522 23677778888899 999999999999999887 67777777777
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHH
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE 311 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~ 311 (796)
|..... ..|+.++|...|. ..... + +...+..+-.. |.. .+++++|...|++..
T Consensus 84 ~~~g~~------~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 84 YYSGQG------VSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTSS------SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred HhCCCC------cccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence 772100 2789999999995 33322 1 44445555455 666 899999999999988
Q ss_pred HcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCH
Q 003768 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 312 ~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
+.+ +...+ ..+-..|.+ .++.++|.+.|++..+.+ +.
T Consensus 142 ~~~---~~~a~---------------------------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 182 (273)
T 1ouv_A 142 DLN---DGDGC---------------------------------TILGSLYDAGRGTPKDLKKALASYDKACDLK---DS 182 (273)
T ss_dssp HTT---CHHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hcC---cHHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 875 22222 334445555 889999999999998875 56
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003768 388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 388 ~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~g 452 (796)
..+..+-..|.. .++.++|...|++..+.+- ...+..+-..|.+ .++.++|.+.|+...+.|
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788889999999 9999999999999888743 5566667777888 899999999999988766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.4e-06 Score=88.24 Aligned_cols=274 Identities=11% Similarity=-0.036 Sum_probs=185.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (796)
.....++.++|...|++..... ++ .|. ...|..+-..|...|++++|++.|++.... +-.|. ...+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4567789999999999987652 11 111 357888889999999999999999987632 22222 445666
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 666666 789999999988511 1111110111 12246666666 777777
Q ss_pred ----------hHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCH
Q 003768 300 ----------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368 (796)
Q Consensus 300 ----------~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~ 368 (796)
+++|...+++....--. ++. ... ...+ ..+-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~-------~~~-----------~~~~-----------~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDR-------AAQ-----------GRAF-----------GNLGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH-------HHH-----------HHHH-----------HHHHHHHHHhCCH
Confidence 78887777665432000 000 000 0112 6677788899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHHcCCh
Q 003768 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
++|.+.|++.... +.. ....++..+...+...|++++|...+++.... +-.+ ...++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999887642 111 11347888999999999999999999987643 1111 145677788889999999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++|.+.++...+. +-. ....++..|-..|.+.|+.++|...+++....
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999887653 111 11447778888999999999999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.1e-05 Score=80.40 Aligned_cols=219 Identities=10% Similarity=-0.042 Sum_probs=161.8
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 003768 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (796)
Q Consensus 167 ~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~-------k~G~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (796)
..|..+|+...... .-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 46778888875431 123467777777765 45886 8999999999873 234 5568888
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcc-hhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
+...+. +.|++++|..+|. ..... .-.+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 888888 7899999999995 33332 111332 68888888 88999999999999988
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHH-HHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE-DAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~-~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (796)
.+.. |+.... | ...... +...|+.++|.++|+...+.. +-+...
T Consensus 161 ~~~~--p~~~~~---------------------~-----------~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 161 REDA--RTRHHV---------------------Y-----------VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp HTST--TCCTHH---------------------H-----------HHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HhcC--CCCHHH---------------------H-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 7753 322111 1 111111 223699999999999887652 336789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g-i~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
|..++..+.+.|+.++|..+|++..... +.|+ ...|..++..+.+.|+.+.|..+++.+.+..
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998873 5553 5678888999999999999999999988753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.7e-06 Score=89.20 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=184.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhc
Q 003768 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~ 263 (796)
.+....+..+=..+.+.|++++|+.+|+++.+.+- .+ ...|..+-..+. ..|++++|...+.-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence 34456667777888999999999999999997632 23 245666666666 789999999988411
Q ss_pred cCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CCC----cceec--------cch--
Q 003768 264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSN----GHMKL--------NSQ-- 326 (796)
Q Consensus 264 ~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~Pd----~~ty~--------~g~-- 326 (796)
.++....+-. ....|..+-.. +...|++++|...+++..+..- .++ ..++. .|+
T Consensus 74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 1111111111 23446666667 8899999999999887765310 011 11121 677
Q ss_pred ------------------hhhHHhhhhcC------CCC----cccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 327 ------------------LLDGRSNLERG------PDD----QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 327 ------------------~~~A~~l~~~m------~pd----~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
..+|...+.+. .++ ..+| ..+-..|...|++++|.+.|++.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF-----------GNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHHTBHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHHHHccCHHHHHHHHHHH
Confidence 77787777664 111 1233 66777888999999999999887
Q ss_pred HhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 379 CLDE-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 379 ~~~g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
.... -.++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|+.++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6421 0122 348889999999999999999999987643 11111 457778888999999999999999887
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 449 LEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 449 ~~~gv-~pd----~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.+..- ..+ ...+..+-..|...|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65311 112 55778888889999999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.24 E-value=9.4e-05 Score=84.64 Aligned_cols=313 Identities=9% Similarity=-0.043 Sum_probs=188.0
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
.+.++.++|..+|+.+... .+-+...|...+..+.+.|++++|..+|+++.... |+...|..++.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--
Confidence 4568899999999999542 12244789999999999999999999999998653 787777776653321
Q ss_pred cCCcccCCCCChhhHHH----HHhhhccCchhhhccCCCC--CcchhhhcccC---ccccccccccCChHHHHHHHHHHH
Q 003768 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSP---MIDKLESNSSYRFDDLDSTFNEKE 311 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~----vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~---~~~~~~~~~~g~~~~A~~lf~eM~ 311 (796)
..|+.+.|.+ +|. ......|.. +...|...+.- ......+.+.|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2355555554 552 222221322 22335444433 000000223577788888887776
Q ss_pred HcCCCCCc---ceec---------------------cchhhhHHhhhhc--------------CCCCc--------cccc
Q 003768 312 NLGQFSNG---HMKL---------------------NSQLLDGRSNLER--------------GPDDQ--------SRKK 345 (796)
Q Consensus 312 ~~Gi~Pd~---~ty~---------------------~g~~~~A~~l~~~--------------m~pd~--------~ty~ 345 (796)
.. |+. ..|. .++..+|..++.+ +.|+. ..|.
T Consensus 158 ~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 158 VN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred hc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 62 321 1111 1122233322221 01110 0111
Q ss_pred cc---ccc----------------------------cccchhhHHHHHHh-------ccCHH-------HHHHHHHHHHh
Q 003768 346 DW---SID----------------------------NQDADEIRLSEDAK-------KYAFQ-------RGFEIYEKMCL 380 (796)
Q Consensus 346 ~~---~~~----------------------------~~~~~n~lI~~~~k-------~g~~~-------~A~~lf~~M~~ 380 (796)
.| ... ....+..+...+.+ .|+++ +|.++|++...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 00 000 00000222233333 57766 89999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-H
Q 003768 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-E 457 (796)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~--~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~ 457 (796)
.-.+-+...|..++..+.+.|++++|..+|+...+. .|+. ..|..+...+.+.|+.++|.++|+...+.. |+ .
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~ 390 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRH 390 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCT
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCch
Confidence 323446889999999999999999999999999874 5653 478888888899999999999999988753 32 2
Q ss_pred HHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHH
Q 003768 458 PELEALLRV-SVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEA 507 (796)
Q Consensus 458 ~ty~~LI~~-~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~ 507 (796)
..|-..... +...|+.++|..+|++..+. .| .+..+.. +.-..+.|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCH
Confidence 333222212 33689999999999988775 33 3445544 3333333433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-05 Score=83.61 Aligned_cols=231 Identities=8% Similarity=-0.044 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCC-hhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~-~~~A~~vf~~~~~~s~em~ 270 (796)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-.++. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 456666677888999999999999999753 224677777777777 6786 999999995 333
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+-. ..|
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~~~---------------------~a~------ 203 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AKNY---------------------HAW------ 203 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TTCH---------------------HHH------
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--ccCH---------------------HHH------
Confidence 32 22255668888777 889999999999999988753 3221 112
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCCC-cc
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~-~g~~~~A-----~~l~~~M~~~gi~Pd-~~ 423 (796)
.-+-..+.+.|++++|++.|+++.+.. +-+...|+.+-.++.+ .|..++| +..|++.... .|+ ..
T Consensus 204 -----~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 204 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 556677788899999999999999864 3478899999999999 6666888 4777776654 354 45
Q ss_pred cHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HhC
Q 003768 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS 486 (796)
Q Consensus 424 ty~~LI~~~~~~G--~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G---------~~~~A~~ll~~M-~~~ 486 (796)
.|+.+-..+.+.| +.++|.+.+.++ + .-..+...+..|.+.|.+.| ..++|..+++++ .+.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 6777777788878 689999999888 3 23346778889999998874 358999999998 443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=81.94 Aligned_cols=131 Identities=8% Similarity=-0.118 Sum_probs=86.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------gi~Pd 421 (796)
..+-..|...|++++|.+.|++.... +-.| ...++..+...|...|++++|..++++..+. ...+.
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 210 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD 210 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 66777888899999999999888764 1123 3568899999999999999999999988753 23455
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHh----CC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE----HG-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~----~g-v-~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+...+..+...+....+...+..+.. .+ . ......+..|-..|...|++++|..+|++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55554444444444332222222222221 11 1 123456788899999999999999999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=82.81 Aligned_cols=239 Identities=11% Similarity=-0.007 Sum_probs=148.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GI-KLGQYHYN 230 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~-~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~------Gi-~pd~~tyn 230 (796)
.....++.++|..+|++......... .........+..+-..|...|++++|+.+|+++... +- .....+|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45567889999999998765210000 001122367888889999999999999999998854 22 23356677
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc------CCCC-CcchhhhcccCccccccccccCChHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~------~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (796)
.+-..+. ..|++++|...|. +.... ..-+ ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7777777 8899999999995 22221 0111 34457777777 8999999999
Q ss_pred HHHHHHHHHcC---CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh
Q 003768 304 DSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (796)
Q Consensus 304 ~~lf~eM~~~G---i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~ 380 (796)
..+|++....- ..++... .......+...|.+.|++++|.+.|+++..
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPN-----------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHH-----------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH-----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998876531 0011100 012345567788899999999999999885
Q ss_pred C-------CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 381 D-------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 381 ~-------gi~pd-------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
. ...+. ...+..+...+...+.+.+|...++..... -..+..+|..+-..|.+.|+.++|.++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 11121 222333344444555666666666665433 12345678888899999999999999998
Q ss_pred HHHh
Q 003768 447 HMLE 450 (796)
Q Consensus 447 ~M~~ 450 (796)
+..+
T Consensus 303 ~al~ 306 (311)
T 3nf1_A 303 AAMR 306 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-06 Score=90.74 Aligned_cols=274 Identities=10% Similarity=-0.068 Sum_probs=186.5
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIK-LGQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~-pd~~tyn~ 231 (796)
.....++.++|...|++...... + .|. ...|..+-..|...|++++|+..|++.... +-. .....+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~--~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGT--E---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC--S---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcc--c---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 45577899999999999876521 1 111 147888889999999999999999998743 211 22345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..|. ..|++++|...+.-. .++....+-. ....|..+-.. |...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666666 789999999988411 0111110101 23346666666 888888
Q ss_pred -------hHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHH
Q 003768 300 -------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRG 371 (796)
Q Consensus 300 -------~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A 371 (796)
+++|...+++..+..-. ++. ... ...| ..+-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~~~~~-------~~~-----------~~~~-----------~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRDLGDR-------GAQ-----------GRAC-----------GNLGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCH-------HHH-----------HHHH-----------HHHHHHHHHcCChHHH
Confidence 88888777665432000 000 000 0112 6677788999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----C-CCcccHHHHHHHHHHcCChHHH
Q 003768 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----N-PRLRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi----~-Pd~~ty~~LI~~~~~~G~~~~A 441 (796)
.+.|++.....- .++ ..++..+...|...|++++|...+++.....- . ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999988765310 112 33788999999999999999999988765311 0 1146777788899999999999
Q ss_pred HHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 442 CSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 442 ~~l~~~M~~~----gv~-pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.+++..+. +-. .....|..|-..|.+.|+.++|...|++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 111 12347788888999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.15 E-value=5.6e-05 Score=71.66 Aligned_cols=163 Identities=12% Similarity=-0.012 Sum_probs=127.9
Q ss_pred HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHH
Q 003768 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (796)
Q Consensus 228 tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (796)
.|..+-..+. ..|+.++|...+. ++... .-.+...|..+... +...|++++|...+
T Consensus 10 ~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 10 YYRDKGISHA----------KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHH----------HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH----------HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHHH
Confidence 4445555555 6799999999994 33322 11255667777778 89999999999999
Q ss_pred HHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 308 NEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 308 ~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
++..... |+ ...+ ..+...+...|++++|.+.|+++.... +.+
T Consensus 66 ~~~~~~~--~~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 109 (186)
T 3as5_A 66 ERSLADA--PDNVKVA---------------------------------TVLGLTYVQVQKYDLAVPLLIKVAEAN-PIN 109 (186)
T ss_dssp HHHHHHC--TTCHHHH---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhcC--CCCHHHH---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHh
Confidence 9987763 22 2222 667778899999999999999988763 457
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...+..+...+...|++++|...+++..+.. ..+...|..+...+...|+.++|.+.++...+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999988763 335678888999999999999999999988653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00012 Score=90.55 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=163.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....+..++|..+|+.-. .++ ...+.+|. ..|++++|.+++++.. +..+|..+=.++-
T Consensus 1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence 3445677888888888861 111 33445544 6677888888887552 3567777777777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|.+.|. .-.|.-.|.-++.. +.+.|++++|.+.|..-.+.. ++
T Consensus 1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence 7899999999984 11255557778888 999999999999887655443 33
Q ss_pred c-------ceec-cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 319 G-------HMKL-NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 319 ~-------~ty~-~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
. ..|. .+++++...++. .++...| ..+=+.|...|++++|..+|... ..|
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI~--~~n~ad~-----------~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFIN--GPNNAHI-----------QQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHHh--CCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 2 2221 233333222211 2333333 44556667777888888888773 378
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
..+...|++.|++++|.+.+++- -+..+|.-+-.+|...|++..|...... +.-+...+..++..|.+.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 1293 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHc
Confidence 88888888888888888888654 3557777777777777887777776554 334667778999999999
Q ss_pred CChhHHHHHHHHHH
Q 003768 471 GKGDRVYYLLHKLR 484 (796)
Q Consensus 471 G~~~~A~~ll~~M~ 484 (796)
|.+++|..+++.-.
T Consensus 1294 G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1294 GYFEELITMLEAAL 1307 (1630)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999986554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00063 Score=76.90 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=69.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG--- 436 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G--- 436 (796)
.++.++|.+.|++..+.| +...+..|-..|... ++.++|...|++..+.| +...+..|-..|...|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 566777777777666554 445556666666665 67777777776666654 2234444444454444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.|+...+.| +...+..|-..|.. .++.++|...|++..+.
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 5666777776666653 45566666666665 56667777777666665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=86.52 Aligned_cols=245 Identities=13% Similarity=0.051 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCch
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~ 267 (796)
..+..+-..+.+.|++++|+.+|+++.+.+-. +. ..|..+-..+. ..|++++|...+.-. .
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 34445556788999999999999999986322 33 35666666666 779999999988511 1
Q ss_pred hhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccc
Q 003768 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (796)
Q Consensus 268 em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty 344 (796)
++....+-. ....|..+-.. |...|++++|...|++.....-. .+ ....+ ..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~-----------~~~ 169 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQLGD-------RLSEG-----------RAL 169 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTC-------HHHHH-----------HHH
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhhc-------hHHHH-----------HHH
Confidence 111111111 33446677677 89999999999999887553100 00 00001 112
Q ss_pred cccccccccchhhHHHHHHhccC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 003768 345 KDWSIDNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (796)
Q Consensus 345 ~~~~~~~~~~~n~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~ 402 (796)
..+-..|...|+ +++|.+.|++.... +-.+ ...++..+...|...|+
T Consensus 170 -----------~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 170 -----------YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 566777888888 99999998876531 2111 23588889999999999
Q ss_pred hHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCC
Q 003768 403 GDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~-Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv----~-pd~~ty~~LI~~~~~~G~ 472 (796)
+++|...+++..+..-. ++ ..+|..+-..|...|+.++|.+.+++..+..- . .....+..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999987653110 11 23777888899999999999999988765311 0 124677888889999999
Q ss_pred hhHHHHHHHHHHhC
Q 003768 473 GDRVYYLLHKLRTS 486 (796)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (796)
+++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.001 Score=75.06 Aligned_cols=245 Identities=8% Similarity=-0.024 Sum_probs=158.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k----~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.++..+|.+.|+...+.| +...+..|=..|.. .++.++|+..|+...+.| +...+..|=..|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE 159 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 456677888888775543 22555556666666 678888888888888776 45555555555552
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHHHcC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~G 314 (796)
... -.++.++|...|. ...+. + +...+..|-.. |.. .++.++|...|.+-.+.|
T Consensus 160 g~g------~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 160 GDG------VTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp TSS------SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCC------CCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 110 2567888888884 22222 1 33333333333 333 677788888877776654
Q ss_pred CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 315 i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
. ...+ ..+-..|.. .++.++|.++|++..+.| +...+
T Consensus 218 ~---~~a~---------------------------------~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 218 D---ELGQ---------------------------------LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp C---HHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred C---HHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 1 1112 334444443 678888888888887765 45667
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 391 TAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-----GDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 391 ~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~-----G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
..|-..|.. .++.++|...|++..+.| +...+..|-..|... ++.++|...|+...+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 788888888888877664 334555555666666 78888888888887765 455666
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAG---KGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G---~~~~A~~ll~~M~~~ 486 (796)
.|-..|...| +.++|..+|++..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 6666666655 677888888887765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-05 Score=68.37 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=101.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|..+|+++....- .+...+ ..+...+...|++++|.+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDP-RSAEAW---------------------------------YNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHH---------------------------------HHHHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCC-cchhHH---------------------------------HHHHHHHHHhcCHHHHHH
Confidence 7888999999999999877531 122222 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+|+++...+ +.+...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.|+.++|...++++.+..
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999998764 4467789999999999999999999999998763 2356778889999999999999999999987643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=79.94 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.+...-..+.+.|++++|+.+|+++.+..- .+ ...|..+-..+. ..|++++|...+.-. .+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~ 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----LT 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HH
Confidence 344455678899999999999999997632 23 356666667777 789999999998411 01
Q ss_pred hhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 269 LGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 269 m~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
+....+-. ....|..+-.. +...|++++|...+.+..+..- .++.. ..+ .++
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~- 126 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKV-------GEA-----------RAL- 126 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH-
T ss_pred HhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCch-------HHH-----------HHH-
Confidence 11110111 23446667667 8899999999999887654310 00100 000 011
Q ss_pred ccccccccchhhHHHHHHhccC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 003768 346 DWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSM 400 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~ 400 (796)
..+-..|...|+ +++|.+.+++.... +-.+ ...++..+...+...
T Consensus 127 ----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 127 ----------YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp ----------HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 566677778888 89999988876531 2111 245788899999999
Q ss_pred CChHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc
Q 003768 401 GDGDMAFDMVKRMKSL----GIN-PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVEA 470 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~----gi~-Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv-~pd----~~ty~~LI~~~~~~ 470 (796)
|++++|...+++..+. +.. ....++..+...+...|+.++|.+.+++..+..- ..+ ..++..+-..|...
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 9999999999987643 111 1123777788889999999999999988764310 112 55778888889999
Q ss_pred CChhHHHHHHHHHHhC
Q 003768 471 GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 471 G~~~~A~~ll~~M~~~ 486 (796)
|++++|...+++....
T Consensus 277 g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-05 Score=86.66 Aligned_cols=212 Identities=4% Similarity=-0.135 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCh-hhHHHHHhhhccCchhhhccCCCCCcchhhhcc
Q 003768 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS 285 (796)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI 285 (796)
+++|+..+++..... +.+...|..+=.++. ..|++ ++|...|. +.... .-.+...|..+-
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg 144 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence 566777777655332 235667766666666 78999 99999995 33322 112556688888
Q ss_pred cCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhc
Q 003768 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365 (796)
Q Consensus 286 ~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~ 365 (796)
.. |.+.|++++|...|++..+.. |+...+ ..+-..|...
T Consensus 145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~---------------------------------~~lg~~~~~~ 183 (474)
T 4abn_A 145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVSL---------------------------------QNLSMVLRQL 183 (474)
T ss_dssp HH------HHHHTCHHHHHHHHHHHHTTC--CCHHHH---------------------------------HHHHHHHTTC
T ss_pred HH------HHHcCCHHHHHHHHHHHHhhC--CCHHHH---------------------------------HHHHHHHHHh
Confidence 88 999999999999999888764 554333 5566667777
Q ss_pred ---------cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC----Cccc
Q 003768 366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS 424 (796)
Q Consensus 366 ---------g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~gi~P----d~~t 424 (796)
|++++|.+.|++..+.. +-+...|..+..+|... |++++|...|++..+. .| +...
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 99999999999988754 34688999999999998 9999999999998875 35 6778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|..+-..|...|+.++|.+.|++..+.. | +...+..+-..+...|+.++|...+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999999999988754 4 4556788888888888888887765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0002 Score=68.88 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=129.0
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
.|..|=.. |.+.|++++|...|++..+.. |+... .| ..+-
T Consensus 7 iy~~lG~~------~~~~g~~~~A~~~~~~al~~~--p~~~~---------------------~~-----------~~la 46 (184)
T 3vtx_A 7 IYMDIGDK------KRTKGDFDGAIRAYKKVLKAD--PNNVE---------------------TL-----------LKLG 46 (184)
T ss_dssp HHHHHHHH------HHHHTCHHHHHHHHHHHHHHC--TTCHH---------------------HH-----------HHHH
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CCCHH---------------------HH-----------HHHH
Confidence 35555455 888999999999999887652 33221 12 6677
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..|.+.|++++|.+.+....... +-+...+..+...+...++.+.|...+.+..... .-+...+..+-..|.+.|+.+
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCch
Confidence 78889999999999999887754 3456778888888999999999999999877652 234567777888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|.+.|+...+.. +-+...|..+-..|.+.|+.++|...|++..+.
T Consensus 125 ~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 125 KAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999988754 235678889999999999999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00032 Score=80.18 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=178.9
Q ss_pred CCcchHHHHHHHHHh--cCCCCCCC-CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCC
Q 003768 164 TNDSGQYKVRGITDE--KGSKKSKK-DRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKL 224 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~--~g~~~~~g-~~Pd--------~~tyn~lI~a~~k~----G~~----~~A~~lf~~M~~~Gi~p 224 (796)
++...|..++.++.. .++..... +.|+ ...|...|...-.. ++. ..|+.+|++.... .+-
T Consensus 192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~ 270 (530)
T 2ooe_A 192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence 445667777776432 12222111 2333 35677666544332 233 4788899998865 234
Q ss_pred CHHHHHHHHHHHHccccCCcccCCCCChh-------hHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccc
Q 003768 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNS 296 (796)
Q Consensus 225 d~~tyn~LL~a~~~~~~~~~~~~k~G~~~-------~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~ 296 (796)
+...|..+...+..... .-...|+++ +|..+|. ..... -.+ +...|..+... +.+
T Consensus 271 ~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~ 333 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EES 333 (530)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HHh
Confidence 56777777776652100 000157776 8888884 22221 123 45558888888 888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHH
Q 003768 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (796)
Q Consensus 297 ~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (796)
.|++++|..+|++..+. .|+..+. .| ..++..+.+.|++++|.++|+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~--------------------~~-----------~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTL--------------------VY-----------IQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchH--------------------HH-----------HHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999998874 3442110 12 667777788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-C
Q 003768 377 KMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V 453 (796)
Q Consensus 377 ~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-v 453 (796)
...+.. +.+...|-..... +...|+.++|..+|+...+. .| +...|..++..+.+.|+.++|..+|+.....+ .
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 988753 1222333222222 33689999999999987765 24 46788888888999999999999999998864 2
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 558888888888999999999999998876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0011 Score=63.55 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+=..|.+.|++++|++.|++..+.. +-+...|..+-.++. +.|+.++|...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~~~~~~a~~~~----------- 62 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYM----------DIGLPNDAIESL----------- 62 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHH-----------
Confidence 4678888889999999999999999988653 224555655555555 555666665555
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
....... |+... .+
T Consensus 63 -------------------------------------~~~~~~~--~~~~~---------------------~~------ 76 (184)
T 3vtx_A 63 -------------------------------------KKFVVLD--TTSAE---------------------AY------ 76 (184)
T ss_dssp -------------------------------------HHHHHHC--CCCHH---------------------HH------
T ss_pred -------------------------------------HHHHhcC--chhHH---------------------HH------
Confidence 3322221 11100 00
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
..+-..+...++++.|.+.+.+..... +-+..++..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus 77 -----~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~ 149 (184)
T 3vtx_A 77 -----YILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGL 149 (184)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHH
Confidence 334445667778888888888777643 3467788888888888999999999988877652 234567777888
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.|.+.|+.++|.+.|++..+.
T Consensus 150 ~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHhC
Confidence 888889999999998888763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00043 Score=72.71 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=86.8
Q ss_pred hhHHHHHHhc-cCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc------
Q 003768 356 EIRLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------ 423 (796)
Q Consensus 356 n~lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~------ 423 (796)
+.+-..|... |++++|.+.|++.... +-.+. ..+|+.+...+.+.|++++|...|++..+........
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4455667775 9999999999877642 11111 3578899999999999999999999988764332221
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHH
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR 484 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~------ty~~LI~~~~--~~G~~~~A~~ll~~M~ 484 (796)
.|..+...+...|+.++|...|++..+. .|+.. .+..|+.+|. ..+++++|...|+.+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4666777888999999999999987653 24322 3445566664 3456777777775543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00054 Score=75.43 Aligned_cols=237 Identities=8% Similarity=-0.038 Sum_probs=172.0
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~-~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
.+.+.++.++|+..|+...... | -+...|+.+-..+.+.|+ +++|+..|+++....- -+...|+.+=.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 4567789999999999986532 1 234788999999999996 9999999999997642 25677777777777
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
+.|++++|+..|. ..... +-.+...|..+-.. +.+.|++++|...|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 33332 22266678888777 889999999999999998863 3
Q ss_pred Cc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh-ccCHHHH-----HHHHHHHHhCCCCCCHHHH
Q 003768 318 NG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 318 d~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~ty 390 (796)
+. ..| +.+-..|.+ .|..++| ++.|++..... +-+...|
T Consensus 232 ~~~~a~---------------------------------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~ 277 (382)
T 2h6f_A 232 RNNSVW---------------------------------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAW 277 (382)
T ss_dssp TCHHHH---------------------------------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CCHHHH---------------------------------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHH
Confidence 22 122 555555666 5554666 57787777643 3367899
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---------ChHHHHHHHHHH-HhCCCCCCH-
Q 003768 391 TAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPEE- 457 (796)
Q Consensus 391 ~~LI~~~~~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G---------~~~~A~~l~~~M-~~~gv~pd~- 457 (796)
+.+...+.+.| +.++|++.+.++ +. -..+...+..+...|.+.| ..++|.++++.+ .+. .|..
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~ 353 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRK 353 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGH
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhH
Confidence 99999999988 689999999887 22 2334567778888888874 358999999998 553 3543
Q ss_pred HHHHHHHHHH
Q 003768 458 PELEALLRVS 467 (796)
Q Consensus 458 ~ty~~LI~~~ 467 (796)
.-|.-+...+
T Consensus 354 ~~w~~~~~~l 363 (382)
T 2h6f_A 354 EYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455554444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0013 Score=70.83 Aligned_cols=273 Identities=9% Similarity=-0.022 Sum_probs=170.8
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQY----HYNVL 232 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P--d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi-~pd~~----tyn~L 232 (796)
....++.++|...+++..... +.. .+ -...++.+-..+...|++++|...+++.....- ..+.. +++.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345688899999999875532 111 11 112566666788899999999999999874211 12222 23334
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC----CcchhhhcccCccccccccccCChHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
-..+. ..|++++|...+.-. -+.....+-. ....+..+-.. +...|++++|...++
T Consensus 100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence 44444 679999999988511 1111111111 12335555555 788999999999998
Q ss_pred HHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC--C
Q 003768 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--N 386 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d 386 (796)
+.....-....... ...| ..+-..+...|++++|...+++.....-.+ .
T Consensus 160 ~al~~~~~~~~~~~------------------~~~~-----------~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQ------------------LQCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHTTTSCGGGG------------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhhccCcHHH------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 87654311100000 0011 556677888999999999999876531111 1
Q ss_pred HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC
Q 003768 387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (796)
Q Consensus 387 ~~ty~----~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p 455 (796)
..... .++..+...|+.++|...+++.......+. ...+..+...+...|+.++|.+.++..... |..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 233457799999999999988654322111 124566778888999999999999887542 3222
Q ss_pred CHH-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 456 d~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+.. .+..+-.++...|+.++|...|.+...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 556666778889999999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.5e-05 Score=83.44 Aligned_cols=279 Identities=13% Similarity=0.006 Sum_probs=184.5
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (796)
.....++.++|...|++...... + .|. ...|..+-..|...|++++|+..|+++... +-.|. ..+|..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT--E---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC--S---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc--c---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 45677899999999999876521 1 111 257888889999999999999999987632 22222 345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666666 779999999988411 0111110100 12346666666 888888
Q ss_pred ----------hHHHHHHHHHHHHc----CCCCCc-ceec--------cchhhhHHhhhhcC------CCC----cccccc
Q 003768 300 ----------FDDLDSTFNEKENL----GQFSNG-HMKL--------NSQLLDGRSNLERG------PDD----QSRKKD 346 (796)
Q Consensus 300 ----------~~~A~~lf~eM~~~----Gi~Pd~-~ty~--------~g~~~~A~~l~~~m------~pd----~~ty~~ 346 (796)
+++|...+.+.... +-.|.. ..+. .|+..+|...+.+. .++ ..+|
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 230 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY-- 230 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH--
Confidence 99998888776442 211111 1121 77888888887775 122 1134
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G 417 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g 417 (796)
..+-..|...|++++|.+.|++.... +-.+. ..++..+...|...|++++|...+++..+. +
T Consensus 231 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 231 ---------SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 67778899999999999999887642 21111 568889999999999999999999987643 1
Q ss_pred CCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCh
Q 003768 418 INP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKG 473 (796)
Q Consensus 418 i~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~ 473 (796)
-.+ ...+|..+-..|...|+.++|.+.+++..+. +-.+ ...++..|-..+...|+.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 111 1456777888889999999999999886542 2111 233455555555555554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00023 Score=77.40 Aligned_cols=235 Identities=10% Similarity=0.053 Sum_probs=157.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~ 273 (796)
..+...|++++|+..|++..+.- -.+| ..+|..+=..+. ..|+.++|...+.-. .++....
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~~ 176 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKEH 176 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHhC
Confidence 45678899999999999998531 1133 345555555666 778999888888410 1111111
Q ss_pred CC-C--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 274 DM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 274 gv-~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
+- . ...+++.+-.. |...|++++|...|++..+..-. ++.. ..+ .+|
T Consensus 177 ~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~----- 227 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQ-------LMG-----------RTL----- 227 (383)
T ss_dssp STTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH-----
T ss_pred ccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChH-------HHH-----------HHH-----
Confidence 11 1 12346666666 88999999999998876543100 0100 000 112
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP 420 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P 420 (796)
+.+-..|...|++++|.+.|++.... +. +....++..+...|.+.|+.++|...+++..+. +-..
T Consensus 228 ------~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 228 ------YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 56777888999999999999988761 33 334678999999999999999999999887643 1111
Q ss_pred CcccHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
....+..+-..+...|+ .++|..+++.. +..|+ ...+..|-..|...|+.++|...+++...
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334556667777888 77777777765 33333 34667788889999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0009 Score=72.12 Aligned_cols=236 Identities=15% Similarity=0.004 Sum_probs=154.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~----tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~g 274 (796)
..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+.-. .++....+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~ 87 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 87 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence 35567899999999999988654222332 3334444444 568999999988511 11111111
Q ss_pred CC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHc----CCC--CCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL----GQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 275 v~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~----Gi~--Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
.. -..+++.+-.. +...|++++|...+++.... |-. |... ..+
T Consensus 88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------~~~-- 138 (373)
T 1hz4_A 88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE---------------------FLV-- 138 (373)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH---------------------HHH--
T ss_pred cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH---------------------HHH--
Confidence 11 11224444445 78899999999998877653 111 1110 011
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
..+-..|...|++++|.+.+++.....- .....+|..+...+...|++++|...+++.....-.++.
T Consensus 139 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 139 ---------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 4456678889999999999998765321 113467888999999999999999999988654222221
Q ss_pred -ccHHH-----HHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 423 -RSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 423 -~ty~~-----LI~~~~~~G~~~~A~~l~~~M~~~gv~p---d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+.. .+..+...|+.++|...++........+ ....+..+...+...|+.++|..++++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 2334778999999999998876543211 1335677788899999999999999887543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0011 Score=73.57 Aligned_cols=293 Identities=9% Similarity=-0.032 Sum_probs=165.3
Q ss_pred hhhcCCcchHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHYN 230 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~--g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-----G-i~p-d~~tyn 230 (796)
....|+.++|++.|++-.+- ....+.......++|+.+-..|...|++++|...|++..+. + ..+ ...+|+
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34568888898888764321 11111112234578999999999999999999999987632 1 111 234555
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
.+-.++... ..+++++|...|. +.... .-.+...+..+... ...+...++.++|.+.+++.
T Consensus 141 ~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 141 EEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHHH
T ss_pred HHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHHH
Confidence 443344311 2356889999995 22221 11122223222222 00134556677788777766
Q ss_pred HHcCCCCCcc-eec------------cchhhhHHhhhhcC---C-CCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 311 ENLGQFSNGH-MKL------------NSQLLDGRSNLERG---P-DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 311 ~~~Gi~Pd~~-ty~------------~g~~~~A~~l~~~m---~-pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
.+.. |+.. .+. .++..+|...+++. . .+...+ ..+-..|.+.|++++|.+
T Consensus 202 l~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-----------~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 202 IRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL-----------RSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred hhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-----------HHHHHHHHHcCchHHHHH
Confidence 5542 3321 111 45556666666654 2 233334 566677778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~-------------------~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.|++..+.. +-+..++..+-..|.. .+..+.|...++...+.. ..+..+|..+-..|..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 888776643 2244555555444432 123456666666655442 2345667777777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~--ty~~LI~-~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.+.|+...+....+... .+..+-. .+...|+.++|...+.+...-
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888888888777654322211 1222211 224567788888887776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0032 Score=78.32 Aligned_cols=246 Identities=12% Similarity=-0.011 Sum_probs=178.6
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+...++.++|.++.++. ... .+|..+=.++-+.|++++|+..|... -|...|.-++.+|.
T Consensus 1085 Lie~i~nldrAiE~Aerv------n~p------~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~- 1145 (1630)
T 1xi4_A 1085 LIEHIGNLDRAYEFAERC------NEP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN- 1145 (1630)
T ss_pred HHHHHhhHHHHHHHHHhc------CCH------HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH-
Confidence 344677888899988876 112 68889999999999999999999664 36788888999999
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|.+.+. |... -.++....+.+..+ |++.+++++...+.. .|+
T Consensus 1146 ---------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1146 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred ---------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCC
Confidence 8899999999994 4332 11233334457777 899998886444431 123
Q ss_pred cceec--------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 319 GHMKL--------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 319 ~~ty~--------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
...|. .|+.++|..++... ..| ..+...|++.|++++|.+.+++- -+..+|
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA----~ny-----------~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF-----------GRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh----hHH-----------HHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 32222 88888898888774 355 88999999999999999999875 367899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
.-+-.+|...|++..|...... +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 9999999999999998887653 33455567789999999999999999997655432 22344555555666553
Q ss_pred --CChhHHHHHHH
Q 003768 471 --GKGDRVYYLLH 481 (796)
Q Consensus 471 --G~~~~A~~ll~ 481 (796)
+++.++.++|.
T Consensus 1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1328 KPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHH
Confidence 34445555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00054 Score=77.48 Aligned_cols=164 Identities=8% Similarity=-0.097 Sum_probs=135.7
Q ss_pred CcchhhhcccCccccccccccCCh-HHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
+...|..+-.. +...|++ ++|...|++..+.. |+. ..|
T Consensus 101 ~a~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~~~~a~-------------------------------- 140 (474)
T 4abn_A 101 EAQALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PELVEAW-------------------------------- 140 (474)
T ss_dssp CHHHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TTCHHHH--------------------------------
T ss_pred hHHHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CCCHHHH--------------------------------
Confidence 33445555555 8889999 99999999887753 332 222
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCcccH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---------g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
..+-..|.+.|++++|.+.|++..+.. |+..++..+-..|... |++++|...|++..+.. .-+...|
T Consensus 141 -~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 216 (474)
T 4abn_A 141 -NQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSW 216 (474)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 777888999999999999999998764 7788999999999999 99999999999988763 2346778
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~--------G~~~~A~~l~~~M~~~gv~p----d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-..|... |+.++|.+.|+...+.. | +...|..+-..|...|++++|...|++..+.
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888 99999999999998853 5 7888999999999999999999999998876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=97.69 E-value=9.4e-05 Score=75.34 Aligned_cols=131 Identities=13% Similarity=0.053 Sum_probs=105.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------GI-NPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~------gi-~Pd 421 (796)
..+-..|...|++++|.+.|++.... +-. ....+|..+...|...|++++|...+.+.... .- ...
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 126 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 67778889999999999999988753 222 24568899999999999999999999988654 11 223
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~------gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+|..+-..|...|+.++|.+++++..+. +-.| ....+..|-..|...|++++|..+|++....
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888999999999999999988764 1123 3567888899999999999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0017 Score=64.68 Aligned_cols=142 Identities=9% Similarity=-0.006 Sum_probs=106.6
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..+..-.++...+ ..+-..+.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTA---------------------------------YNCGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHH---------------------------------HHHHHHHHHhhcHHHHHH
Confidence 67789999999999988776532344333 336677888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--------ccHHHHHHHHHHcCChHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~--------~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
.|++..... +-+..+|..+...|...|++++|...+++..+. .|+. ..|..+=..+...|+.++|.+.|
T Consensus 64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999888754 235678888999999999999999999988765 3443 34555666777889999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCh
Q 003768 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (796)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~LI~~~~~~G~~ 473 (796)
+...+. .|+ ...|..|-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 998875 365 45666666677666655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0028 Score=70.32 Aligned_cols=265 Identities=9% Similarity=-0.026 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G---IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-----G---i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~ 263 (796)
..||.|=..+...|+.++|++.|++..+. + -.-...+|+.+=.+|. ..|++++|...+.-.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka- 120 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV- 120 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH-
Confidence 78999989999999999999999987632 1 1224578888888888 789999998888411
Q ss_pred cCchhhhccC-C---CCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec------------cchh
Q 003768 264 MNSTELGDSR-D---MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------------NSQL 327 (796)
Q Consensus 264 ~~s~em~~~~-g---v~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~------------~g~~ 327 (796)
.++.... + .....+|+.+-.+ ......+++++|...|++..+. .|+...+. .++.
T Consensus 121 ---~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 ---KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp ---HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1221110 1 1111223322222 0022345789999999988765 36543221 2334
Q ss_pred hhHHhhhhcC---CCCc-ccccccccccccchhhHHHHHH----hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 328 LDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (796)
Q Consensus 328 ~~A~~l~~~m---~pd~-~ty~~~~~~~~~~~n~lI~~~~----k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (796)
.+|+..+.+. .|+. ..+ ..+-..+. ..++.++|.+++++..... +.+..++..+...|..
T Consensus 192 ~~al~~~~~al~l~p~~~~~~-----------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLK-----------VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 4555555443 3332 222 22322333 3457889999998877653 4567789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHH-------------------cCChHHHHHHHHHHHhCCCCCCHHH
Q 003768 400 MGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPE 459 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~-------------------~G~~~~A~~l~~~M~~~gv~pd~~t 459 (796)
.|++++|...+++..+. .|+. .+|..+-..|.. .+..++|...++...+.. ..+...
T Consensus 260 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred cCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 99999999999998765 3543 334333333321 123566777777766543 123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
+..+-..|...|++++|...|++.... .+.+.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhc--CCCCh
Confidence 777888999999999999999998876 55554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0027 Score=66.98 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~ty 425 (796)
+.+-..|.+ |++++|.+.|++.... |-.. -..+++.+...|.+.|++++|...|++..+. +..+. ...|
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 344455666 8888888888766542 2111 1457888899999999999999999987653 22121 1255
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHH
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGKGDRVYYL 479 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd------~~ty~~LI~~~~~~G~~~~A~~l 479 (796)
..+...+...|+.++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 556667777799999999999877 3 332 12344555555 56776665553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00098 Score=79.49 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=132.3
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
..|+.|=.. +.+.|++++|...|++-.+. .|+... .| +.+
T Consensus 10 ~al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~~~---------------------a~-----------~nL 49 (723)
T 4gyw_A 10 DSLNNLANI------KREQGNIEEAVRLYRKALEV--FPEFAA---------------------AH-----------SNL 49 (723)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCCHH---------------------HH-----------HHH
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCCHH---------------------HH-----------HHH
Confidence 345556555 88999999999999988765 244221 12 667
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~ 437 (796)
-..|.+.|++++|.+.|++..+.. +-+..+|..|-.+|.+.|++++|.+.|++..+. .|+ ...|+.+-..|.+.|+
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 788999999999999999988753 335789999999999999999999999988765 344 5688888899999999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++|.+.|++..+.. | +...|..|...|...|++++|.+.+++..+
T Consensus 127 ~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 127 IPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999988754 5 467889999999999999999988887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0036 Score=66.48 Aligned_cols=125 Identities=9% Similarity=0.087 Sum_probs=95.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~ty~~LI~~~~--~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
-.++..+.+.|+.+.|.+++++|.+. .| +..+..-|+.++. ..| +..+|+.+|+++.+. .|+..+-.
T Consensus 140 ~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~ 215 (310)
T 3mv2_B 140 LLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQL 215 (310)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHH
Confidence 56788999999999999999999875 46 3667777777733 334 899999999998655 36544556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC-----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~~-----gv----~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++.++.+.|++++|.++++.+.+. .. .-|..++..+|..+...|+ +|.+++.++...
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6777889999999999999977653 11 2355666566666666776 899999999987
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0046 Score=66.98 Aligned_cols=126 Identities=10% Similarity=-0.031 Sum_probs=89.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~ 426 (796)
+.+-..|...|++++|.+.|++... .. +....++..+...|.+.|+.++|...+++..+..-..+ ...+.
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566677888999999999988776 32 33367888999999999999999999998876422211 22344
Q ss_pred HHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 427 PALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 427 ~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.+-..+...|+ +.+|...++. .+..|+. ..+..|-..|...|+.++|...|++...
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445556677 7777777765 3333333 3556788888999999999999988754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0036 Score=54.62 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...+.+.|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+.. ..+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 3344444555555555555544332 2234444445555555555555555555444331 1223344444444444444
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...++.+.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0084 Score=59.53 Aligned_cols=194 Identities=11% Similarity=-0.063 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
|...|..+=..+.+.|++++|+..|+...+..-.++...+..+-.++. ..|+.++|...|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~---------- 65 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD----------NIKKYKEAADYF---------- 65 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH----------HhhcHHHHHHHH----------
Confidence 346677777788999999999999999997764466665555444444 445555555555
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
++..+. .|+... .|
T Consensus 66 --------------------------------------~~al~~--~p~~~~---------------------~~----- 79 (228)
T 4i17_A 66 --------------------------------------DIAIKK--NYNLAN---------------------AY----- 79 (228)
T ss_dssp --------------------------------------HHHHHT--TCSHHH---------------------HH-----
T ss_pred --------------------------------------HHHHHh--CcchHH---------------------HH-----
Confidence 333322 122110 11
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd- 421 (796)
..+-..|.+.|++++|.+.|++..+.. +-+. .+|..+-..+...|++++|...|++..+. .|+
T Consensus 80 ------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~ 150 (228)
T 4i17_A 80 ------IGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKK 150 (228)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHH
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCc
Confidence 445566777788888888888777643 2233 45777777888889999999999887654 455
Q ss_pred --cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 --LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 --~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...|..+-..|... +..+++.+...+ ..+...|..+.. ...+.+++|...|++..+.
T Consensus 151 ~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 151 WKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 34444444445433 344455554433 234555555443 3456688899999888776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0013 Score=69.90 Aligned_cols=126 Identities=8% Similarity=-0.042 Sum_probs=99.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CcccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-----d~~ty~~LI 429 (796)
..+-..+...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+++++|.+. .| +..+..-|.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 4566778889999999999998866553 236778889999999999999999999999875 45 245555566
Q ss_pred HHHH--HcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 430 SVFC--NNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 430 ~~~~--~~G--~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++. ..| +..+|+.+|+++.+.. |+..+...|+.++.+.|++++|..+|+.+.+
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5633 334 8999999999997754 6655556677789999999999999997765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0025 Score=73.42 Aligned_cols=128 Identities=9% Similarity=-0.070 Sum_probs=109.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|...|++++|.+.+++..+.. .-+...|..+-..|.+.
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDA 104 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 667778889999999999999988764 3467899999999999999999999999987762 22456788888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~---G~~~~A~~ll~~M~~~ 486 (796)
|+.++|.+.+++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 105 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999988754 23567888899999999 9999999999998876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0056 Score=59.83 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=104.9
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
.+-..+...|++++|.+.|++. +.|+..+|..+...|...|++++|...|++..+.. ..+...|..+-..|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3445677899999999999876 46788999999999999999999999999987763 235667888888999999
Q ss_pred ChHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHG--------------VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~g--------------v~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.|+...+.. ..| ....|..+-..|.+.|+.++|...|++....
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999998753 111 2267788888999999999999999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0014 Score=71.25 Aligned_cols=235 Identities=9% Similarity=-0.062 Sum_probs=156.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~ 231 (796)
.....++.++|...|++...... ..+..+ ...+|..+-..|...|+++.|+..|.+..+. ... + ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567899999999999754211 111112 2357888888999999999999999998743 111 1 1345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (796)
+=..|. ..|++++|...|.-. -++....+-. -..+|+.+-.. |...|++++|...|++
T Consensus 190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence 556666 789999999988511 1121111111 12346666666 8999999999999987
Q ss_pred HHHc----CCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----
Q 003768 310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (796)
Q Consensus 310 M~~~----Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (796)
..+. +-.|+.. .++ ..+-..|.+.|++++|.+.|++....
T Consensus 250 al~~~~~~~~~~~~~---------------------~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 250 AIAVFEESNILPSLP---------------------QAY-----------FLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHTTCGGGHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHH---------------------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 7652 2112110 111 66778889999999999999877642
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+-+.....++.|-..+...|+ .++|+.++++. +..|+. ..+..+-..|...|+.++|.+.++...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222223446778888888998 77777777664 333433 3566677889999999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0078 Score=52.37 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+|..+...+...|++++|..+++++.+.. ..+..++..+...+.+.|+.++|..+++.+.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998763 2356778888899999999999999999998754 3467888999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0073 Score=56.02 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=96.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 555667788999999999999887753 3467888899999999999999999999887653 23456777778888899
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
|+.++|.+.|+...+..- .+...+ -.+...+.+.|++++|...+.....
T Consensus 95 ~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999998887531 233444 3334446777888888888876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0037 Score=74.52 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
...|+.|=..|.+.|++++|++.|++..+. .|+ ...|+.|=.+|. +.|++++|...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~----------~~g~~~eA~~~~~--------- 67 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ----------QQGKLQEALMHYK--------- 67 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH----------HTTCHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH---------
Confidence 467888888999999999999999998865 343 556666655555 5566666666663
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc-eeccchhhhHHhhhhcCCCCcccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH-MKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~-ty~~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
+..+. .|+.. .|
T Consensus 68 ---------------------------------------~Al~l--~P~~~~a~-------------------------- 80 (723)
T 4gyw_A 68 ---------------------------------------EAIRI--SPTFADAY-------------------------- 80 (723)
T ss_dssp ---------------------------------------HHHHH--CTTCHHHH--------------------------
T ss_pred ---------------------------------------HHHHh--CCCCHHHH--------------------------
Confidence 32222 12211 11
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGP 427 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~ 427 (796)
+.+-..|.+.|++++|.+.|++..+.. +-+..+|+.|-.+|.+.|++++|...|++..+. .|+ ...|..
T Consensus 81 -------~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~ 150 (723)
T 4gyw_A 81 -------SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCN 150 (723)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhh
Confidence 445555666666777777666665532 224556677777777777777777777766554 233 445666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...|...|++++|.+.+++..+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHH
Confidence 66667777777766666655543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0078 Score=61.28 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=117.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|++..... |+.... .++ + ..+-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~-----~~a-------------~-----------~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA-----ADA-------------Q-----------FYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH-----HHH-------------H-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch-----HHH-------------H-----------HHHHHHHHHhCcHHHHHH
Confidence 678899999999999887753 332100 011 1 445667889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCc-ccH-----------------
Q 003768 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (796)
Q Consensus 374 lf~~M~~~gi-~pd-~~ty~~LI~~~~~--------~g~~~~A~~l~~~M~~~gi~Pd~-~ty----------------- 425 (796)
.|+......- .|. ..++..+..++.. .|++++|...|++..+. .|+. ...
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987531 122 4567777888888 99999999999998875 2443 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd----~~ty~~LI~~~~~~----------G~~~~A~~ll~~M~~~ 486 (796)
..+-..|.+.|+.++|...|+...+.. |+ ...+..+..+|... |++++|...|+++...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 234567888999999999999998754 43 45667777777765 8889999999999887
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0063 Score=63.64 Aligned_cols=131 Identities=7% Similarity=-0.110 Sum_probs=96.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|.+.|++++|...|++.... |-.. -..+|+.+-..|... |++++|...|++..+. +-.+. ..+
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 55556677778888888877765532 2111 135788899999996 9999999999987653 11111 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~------~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|+.+-..|.+.|+.++|.+.|+...+....... ..|..+..++...|+.++|...|++....
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888999999999999999999886433222 25677778889999999999999987754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.011 Score=51.98 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=72.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..+.+.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 445556667777777777777766542 3356677777777777777777777777766542 12345566666677777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
|+.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777766543 1244555555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0072 Score=63.65 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=93.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty 425 (796)
+-+-..|.+.|++++|.+.|++... .|-.. -..+++.+-..|.. |++++|...|++.... |-.+ -..+|
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 5566777888899889888886543 22111 13578888888888 9999999999887643 1111 13567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
+.+-..|.+.|+.++|.+.|++..+. +..+.. ..+..+...+...|+.++|...|++..
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77888999999999999999988753 222222 256667777778899999999999987
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0092 Score=58.27 Aligned_cols=121 Identities=7% Similarity=-0.093 Sum_probs=97.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++. +.|+...+ ..+-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~~~~~---------------------------------~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPHSRIC---------------------------------FNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCChHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 66788889888888755 33444333 777788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------------C-CcccHHHHHHHHHHcCCh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN--------------P-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~--------------P-d~~ty~~LI~~~~~~G~~ 438 (796)
.|++..... +.+...|..+..+|...|++++|...|++..+..-. | ....|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988754 457789999999999999999999999998875211 1 115677788889999999
Q ss_pred HHHHHHHHHHHhCC
Q 003768 439 DKACSVEEHMLEHG 452 (796)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (796)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.014 Score=60.86 Aligned_cols=163 Identities=6% Similarity=-0.074 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|..++++..... ..|+...+ +. .| ..+...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~-------~~-----------~~-----------~~l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF-------LQ-----------WQ-----------YYVAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH-------HH-----------HH-----------HHHHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHH-------HH-----------HH-----------HHHHHHHHcccCHHHHH
Confidence 788899999999998887642 11111000 00 01 34555667778999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-cccHHHHHHHHHHcCChHHH
Q 003768 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----gi~Pd-~~ty~~LI~~~~~~G~~~~A 441 (796)
+.|++....... ++ ..+|+.+-..|...|++++|...|++..+. +..+. ..+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999998874222 23 347999999999999999999999988742 22222 23777888899999999999
Q ss_pred HHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 003768 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (796)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~LI~~~~~~G~-~~~A~~ll~~M~~ 485 (796)
.+.+++..+ .+-.+. ...|..+-..|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987654 233333 5678888888899995 5999988887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.016 Score=57.86 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=109.9
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|+++.... |+.... .+| + ..+...|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~-----~~a-------------~-----------~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS-----QQV-------------Q-----------LDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH-----HHH-------------H-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH-----HHH-------------H-----------HHHHHHHHhcCCHHHHHH
Confidence 667899999999999988752 221100 001 1 446678888999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCccc-HH------
Q 003768 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLRS-YG------ 426 (796)
Q Consensus 374 lf~~M~~~gi~-pd~-~ty~~LI~~~~~------------------~g~~~~A~~l~~~M~~~gi~Pd~~t-y~------ 426 (796)
.|++..+..-. +.. .++-.+-.++.. .|+.++|...|+++.+. .|+..- +.
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99998875311 221 133333333333 57899999999998765 355432 21
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 -----------~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~----~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..|.+.|+.++|...|+.+.+.- |+. ..+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 23346778899999999999988753 542 46778888999999999999999988876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0052 Score=58.79 Aligned_cols=126 Identities=8% Similarity=0.089 Sum_probs=81.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~ 433 (796)
..+-..|.+.|++++|...|+...... |+...+..+... +...+...+|...+++..+. .|+ ...+..+-..+.
T Consensus 44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 44 LAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 556667778888888888888765543 344333222211 12222334467777776654 343 566666777788
Q ss_pred HcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..|+.++|...|+.+.+..-.+ +...+..|...+...|+.++|...+++...
T Consensus 120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888888888887754222 245777888888888888888888776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0055 Score=58.30 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.1
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHHcCCh--
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~-~~~~G~~-- 438 (796)
+...|++++|.+.|++..... +.+...|..+...|...|++++|...|++..+.. ..+...|..+-.. +...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356778889999998877653 4577899999999999999999999999987652 1244556666666 6688998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++|...++...+.. .-+...+..+-..|...|++++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998764 224677888888999999999999999998876
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.012 Score=51.73 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEA 462 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd----~~ty~~ 462 (796)
.|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|...++...+.. ..++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45555556666666666666666655442 2234455555556666666666666666655432 1122 455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+-..+...|++++|...|++....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777776665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.07 Score=53.01 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=66.3
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~- 422 (796)
+...|+.++|...|+++.+.. |+. .++ -.+...|.+.|++++|...|+++.+. .|+.
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 181 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQ 181 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSH
T ss_pred hcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCC
Confidence 345678999999999988753 331 122 23456788999999999999998875 3543
Q ss_pred ---ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 423 ---RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 423 ---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 182 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 182 ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 457778889999999999999999988765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.02 Score=58.20 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cc
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LR 423 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ 423 (796)
.|++++|...|++..... +-+.... -.+...|.+.|++++|...|++..+. .|+ ..
T Consensus 110 ~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 186 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADD 186 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHH
T ss_pred chhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHH
Confidence 788899999998887653 1122222 45678889999999999999998875 244 23
Q ss_pred cHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCH
Q 003768 424 SYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 424 ty~~LI~~~~~~----------G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
.+..+-.+|... |+.++|...|+...+.. |+.
T Consensus 187 a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 228 (261)
T 3qky_A 187 ALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCC
Confidence 555566677765 88999999999988753 553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0069 Score=51.78 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLR 465 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p---d~~ty~~LI~ 465 (796)
.|..+...+...|++++|...|++..+.. ..+...|..+-..+...|+.++|.+.++...+.. | +...+..+-.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 34445555566666666666666655432 1234445555556666666666666666666543 3 3556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHhC
Q 003768 466 VSVEA-GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~-G~~~~A~~ll~~M~~~ 486 (796)
.+.+. |+.++|.+.|.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66677 7777777777766655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0098 Score=52.68 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|.+.|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..+.+.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 334444555555555555555555432 2244455555555555555555555555554431 11233444444455555
Q ss_pred CChHHHHHHHHHHHh
Q 003768 436 GDVDKACSVEEHMLE 450 (796)
Q Consensus 436 G~~~~A~~l~~~M~~ 450 (796)
|+.++|.+.|+...+
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0046 Score=59.69 Aligned_cols=131 Identities=14% Similarity=-0.019 Sum_probs=97.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--Cccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P--d~~t 424 (796)
+.+-..|...|++++|.+.|++... .+..| ...++..+-..+...|++++|...+++.... +-.| ....
T Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 109 (203)
T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 6677788889999999999988775 22222 3457888889999999999999999876543 2112 2345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+-..+...|+.++|...+++..+. +-.. -..++..|-..+...|+.++|...+++..+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 667777888999999999999887642 2111 1234577778889999999999999876543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.04 Score=57.20 Aligned_cols=94 Identities=5% Similarity=-0.056 Sum_probs=71.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----D-EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~-gi~pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|...|++++|.+.|++... . +..+.. .+|..+...|.+.|++++|...+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6677788899999999999988874 1 222333 38899999999999999999999876543 22222 456
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHH
Q 003768 425 YGPALSVFCNNG-DVDKACSVEEHML 449 (796)
Q Consensus 425 y~~LI~~~~~~G-~~~~A~~l~~~M~ 449 (796)
|..+=..|.+.| +.++|.+.++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777888889 4699998887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.023 Score=48.36 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=80.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P--d~~ty~~LI~~~~ 433 (796)
..+-..+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+..- . +...|..+-..+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHH
Confidence 667778889999999999999988754 34678899999999999999999999999887631 2 4677788888899
Q ss_pred Hc-CChHHHHHHHHHHHhCC
Q 003768 434 NN-GDVDKACSVEEHMLEHG 452 (796)
Q Consensus 434 ~~-G~~~~A~~l~~~M~~~g 452 (796)
+. |+.++|.+.+.......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGC
T ss_pred HHhCCHHHHHHHHHHHhhcc
Confidence 99 99999999999988754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.018 Score=68.04 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=106.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~ 434 (796)
..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|++..+. .| +...|..+-..|.+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 556677889999999999999988753 346789999999999999999999999998765 34 45677778888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++ .+.|+...+.. .-+...|..+-.++.+.|+.++|...|++..+.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999 99999988754 125678888999999999999999999987655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.019 Score=50.37 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=86.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----cccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi--~Pd----~~ty~~LI 429 (796)
..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.....- .++ ...|..+-
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 556677889999999999999988754 45778899999999999999999999998876521 122 66778888
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+.+.|+.++|.+.|+...+.. |+......+-..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 89999999999999999998854 666555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.011 Score=58.36 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=112.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..+.. |+.... +.. ..+...... .....+.+-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~--------~~~-~~~~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN--IDRTEM--------YYW-TNVDKNSEI-------SSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHHH--------HHH-HHSCTTSHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHH--------HHH-hhhcchhhh-------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 667899999999999887652 332111 000 000000000 00000226667889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC--hHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~--~~~A~~l~~~M~~ 450 (796)
.|++..+.. +-+...|..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...+....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~- 151 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence 999988764 347889999999999999999999999998875 354 4566666666655543 344555555543
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 003768 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (796)
Q Consensus 451 ~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t 494 (796)
.|+...+ ..+-.++...|++++|...|++..+. .|+...
T Consensus 152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 3554433 23333455678999999999999877 665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.081 Score=62.38 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=105.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
-..+....+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+...+...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 55566667788999999999999876 3 2344444444443222 35699999999988776 3224444567788888
Q ss_pred HcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~p--d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~ 503 (796)
..|+.+.|..+|+........+ ....|...++.-.+.|+.+.+..+..+|.+. .|..+....+..-++
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 8999999999999988765322 3468889999889999999999999999998 666555555444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.049 Score=46.61 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...+..+...+...|++++|...|++..... ..+...+..+-..+...|+.++|...++...+.. ..+...+..+-..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777765542 1244555556666667777777777777766543 1245666677777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|+.++|...+++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.043 Score=56.99 Aligned_cols=163 Identities=6% Similarity=-0.067 Sum_probs=115.2
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...+.+..+..-..+.. . ..+. .+ ..+...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~-~-----~~~~-----------~~-----------~~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEF-Q-----QFLQ-----------WQ-----------YYVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHH-H-----HHHH-----------HH-----------HHHHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhH-H-----HHHH-----------HH-----------HHHHHHHhcCCCHHHHHH
Confidence 778899999999998877653211000 0 0000 00 334455677889999999
Q ss_pred HHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHHcCChHHHH
Q 003768 374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 374 lf~~M~~~g---i~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd-----~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.|++..... ..+. ..+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+-..|.+.|+.++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999887532 1222 458999999999999999999999987632 11222 257888888999999999999
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 003768 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (796)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~LI~~~~~~G~~~~A-~~ll~~M~ 484 (796)
+.++...+. +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887643 22222 56788888899999999999 77676643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.023 Score=50.15 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
+.+...|..+...+...|++++|...|++..+.. ..+...|..+-..|...|+.++|.+.++...+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4467788999999999999999999999987652 2356777888888899999999999999988754 2357788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.009 Score=62.42 Aligned_cols=123 Identities=7% Similarity=0.007 Sum_probs=64.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G~~ 438 (796)
..+.+.|++++|..+|++..... +-+...+..|...+.+.|++++|..++++.... .|+........ ..+...++.
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhccc
Confidence 34455666666666666655432 224455666666666666666666666654332 23322211111 124445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|.+.++...+.. ..+...+..|-..|...|+.++|...|.++...
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666665555433 123455555666666666666666666666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.011 Score=55.29 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=94.0
Q ss_pred HhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~ 440 (796)
...|++++|++.|...... .| +...+-.|-..|.+.|++++|.+.|++..+. .| +...|..+-..|.+.|+.++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 4567889999998876643 23 3445667889999999999999999998875 34 46778888889999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 003768 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTS 486 (796)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~l-l~~M~~~ 486 (796)
|...|+...+.. | +...|..|-..|.+.|+.++|.+. +++..+.
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999998754 6 467888899999999999876655 5666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.034 Score=63.82 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.+++..+. .| +...|..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 367889999998877653 335788999999999999999999999998765 34 46677888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+++..+.. .-+...|..|-..|.+.|+.++|.+.|++..+.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988754 235678889999999999999999999998876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.053 Score=46.42 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=80.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..+...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 556677888999999999999988753 3478889999999999999999999999987763 23466778888899999
Q ss_pred CChHHHHHHHHHHHhCC
Q 003768 436 GDVDKACSVEEHMLEHG 452 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~g 452 (796)
|+.++|.+.++...+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 99999999999988754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.026 Score=51.01 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. ..+...|..+-.+|...|+.+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 34556666666666666655432 3355666666666666666666666666655431 123445555555566666666
Q ss_pred HHHHHHHHHHh
Q 003768 440 KACSVEEHMLE 450 (796)
Q Consensus 440 ~A~~l~~~M~~ 450 (796)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.009 Score=56.75 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=91.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..... |+.. ..| ..+-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~---------------------~~~-----------~~lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNS---------------------EQW-----------ALLGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCH---------------------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcH---------------------HHH-----------HHHHHHHHHcCCHHHHHH
Confidence 667788888888887776542 2221 112 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~--~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.|++..... +.+...+..+..+ +...|+. ++|...+++..+.. .-+...+..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988753 3367788888888 7799998 99999999988763 12356677788889999999999999999887
Q ss_pred CC
Q 003768 451 HG 452 (796)
Q Consensus 451 ~g 452 (796)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 54
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.055 Score=47.17 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...+..+...+...|++++|...+++..... ..+...|..+-..+...|+.++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888899999999999999999987652 2356778888889999999999999999988753 235778888889
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|+.++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.056 Score=58.28 Aligned_cols=127 Identities=14% Similarity=0.028 Sum_probs=92.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd~~ty~ 426 (796)
+.+-..|...|++++|.+.|++.... +-.+ ...+++.|-..|...|++++|...+++..+. +-.....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 55667788889999999998876642 2111 2357888999999999999999999987761 2222356777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLEHG----VYPEEPELEALLRVSVEAGK---GDRVYYLLHK 482 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~~g----v~pd~~ty~~LI~~~~~~G~---~~~A~~ll~~ 482 (796)
.+-..|.+.|+.++|.+.++...+.. -......+..|-..+...|+ ..+|..++++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78889999999999999999887642 12223455566666667777 6777777766
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.04 Score=58.90 Aligned_cols=127 Identities=11% Similarity=-0.000 Sum_probs=103.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+-..|.+.|++++|...|++.....-... ..+|..+..+|.+.|++++|...+++..+.. ..+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 5566778899999999999998887542211 5899999999999999999999999988763 235
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV-YYLLHKLRT 485 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A-~~ll~~M~~ 485 (796)
...|..+-.+|...|+.++|.+.|+...+.. | +...+..|-..+.+.|+.++| ..++..|..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999999999999999988754 4 567788888888899998888 446666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.018 Score=53.75 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=86.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~ 434 (796)
-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+. .|+ ...|..+-..|.+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 345667889999999999999988754 347889999999999999999999999998875 354 5677778888999
Q ss_pred cCChHHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003768 435 NGDVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (796)
Q Consensus 435 ~G~~~~A~~l-~~~M~~~gv~p-d~~ty~~LI~~~~~~G~ 472 (796)
.|+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 112 ~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999876665 4666653 35 45556655555555553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.039 Score=51.91 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=59.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+.+.|++++|.+.|+...... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 3345566777777777777766543 3356667777777777777777777777666542 1234555556666677777
Q ss_pred hHHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEH 451 (796)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (796)
.++|.+.|+...+.
T Consensus 120 ~~eA~~~~~~al~l 133 (151)
T 3gyz_A 120 PLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.063 Score=47.99 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
.+...|..+...+...|++++|...|++..... ..+...|..+-..+...|+.++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456778888888888999999999888877653 2245667777778888899999999888887754 22567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|...|++++|...|.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888999999999988887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.16 Score=52.47 Aligned_cols=94 Identities=5% Similarity=-0.077 Sum_probs=70.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|...|++++|.+.|++... .+-.+ ...+|+.+...|.+.|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6677788899999999999988762 11111 1268899999999999999999999987543 11111 456
Q ss_pred HHHHHHHHHHcCChHHH-HHHHHHHH
Q 003768 425 YGPALSVFCNNGDVDKA-CSVEEHML 449 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A-~~l~~~M~ 449 (796)
|..+-..|.+.|+.++| ...++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777888999999999 77676543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.09 Score=46.36 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALL 464 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~----ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd----~~ty~~LI 464 (796)
+...+...|++++|...|+...+.. |+.. .+..+-..+.+.|+.++|...|+...+.. |+ ...+..+-
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445556667777777776665532 3322 44445556666777777777777666543 33 44556666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|...|++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.058 Score=50.68 Aligned_cols=102 Identities=4% Similarity=-0.091 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (796)
+...+..+-..+.+.|++++|...|+..... .| +...|..+=.+|...|+.++|.+.|+...+.. | +...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHH
Confidence 3456778888999999999999999998876 34 45667777788999999999999999998854 4 46778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-.+|.+.|+.++|...|++.... .+.+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 89999999999999999999887 55554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.1 Score=46.89 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
+...+..+...+...|++++|...|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666777777777777777777766543 344 4556666666777777777777777766542 12455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..|...|+.++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777777654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.061 Score=51.48 Aligned_cols=95 Identities=7% Similarity=-0.130 Sum_probs=67.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-Cccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~t 424 (796)
+.+-..|...|++++|.+.|++.... +-.| ...++..+-..+...|++++|...+++.... +-.. -..+
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 55666778888999999888876542 2111 2456788888999999999999999887643 2111 1233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+..+-..+...|+.++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677788889999999998877543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.09 Score=47.34 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
.+..+=..|.+.|++++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556678899999999999999987652 2356778888889999999999999999988754 235778899999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003768 469 EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~ 486 (796)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.15 Score=50.19 Aligned_cols=115 Identities=8% Similarity=-0.043 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHH----cCC
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGIN-PRLRSYGPALSVFCN----NGD 437 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~-Pd~~ty~~LI~~~~~----~G~ 437 (796)
+.++|++.|++..+.| +..++..|-..|.. .++.++|+..|++..+.|.. -+...+..|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 5556666665555544 44555555555554 55666666666655444321 013444444444544 455
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-G-----KGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~-G-----~~~~A~~ll~~M~~~ 486 (796)
.++|.+.|+...+.+ .+...+..|-..|... | +.++|...|+.-.+.
T Consensus 145 ~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666666655541 2333444444444332 2 556666666665555
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.14 Score=46.96 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
..|..+...+...|++++|...|++..+.. ..+...|..+-..+...|+.++|.+.++...+.. ..+...|..+-..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 467778888999999999999999987652 2356778888888999999999999999988754 23577888888999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...|+.++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.034 Score=53.96 Aligned_cols=119 Identities=8% Similarity=-0.081 Sum_probs=83.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CC---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~p---d-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..+-..+.+.|++++|.+.|++.....- .| . ..+|..+..+|.+.|++++|...++...+.. ..
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~ 120 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KN 120 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc
Confidence 4455667788999999999998876421 11 1 2678888888889999999999988877652 23
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~ 477 (796)
+...|..+-.+|...|+.++|.+.|+...+.. | +...+..+-..+...++.+++.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888889999988888877643 4 4455566655555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.09 Score=46.54 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=53.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
-..+.+.|++++|.+.|++..... +.+...|..+..+|.+.|++++|...+++..+.. .-+...|..+-..+...|+.
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCH
Confidence 344556667777777776665542 2345666666666666777777776666665542 11234455555566666666
Q ss_pred HHHHHHHHHHHh
Q 003768 439 DKACSVEEHMLE 450 (796)
Q Consensus 439 ~~A~~l~~~M~~ 450 (796)
++|.+.|+...+
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.019 Score=52.24 Aligned_cols=130 Identities=14% Similarity=-0.015 Sum_probs=96.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty 425 (796)
..+-..|...|++++|.+.|++.....- .++ ..++..+...+...|++++|...+++.... +-.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 5566778889999999999988765311 112 247888999999999999999999987643 1111 14466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..+...|+.++|...+++..+
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777888999999999999887643 2111 134677788888999999999999987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.017 Score=68.33 Aligned_cols=173 Identities=9% Similarity=-0.045 Sum_probs=124.7
Q ss_pred CCCChhhHHHHHhhhccCchhhhc-----c-CCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGD-----S-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~-----~-~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.++|.+.+. +... . ..-+ +...|..+-.. +.+.|++++|...|++..+.. |+..
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~~ 467 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVDFSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWRW 467 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------CCTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCCH
T ss_pred cccCHHHHHHHHH-------HhhhhcccccccccccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cchH
Confidence 6788999999985 3330 0 0112 44456666666 889999999999999887652 3221
Q ss_pred eeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (796)
Q Consensus 321 ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (796)
..| ..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.
T Consensus 468 ---------------------~a~-----------~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 468 ---------------------RLV-----------WYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA 514 (681)
T ss_dssp ---------------------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred ---------------------HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 111 555567889999999999999988754 33677889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003768 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~ 472 (796)
|++++ ...|++..+.. .-+...|..+-..+.+.|+.++|.+.|+...+. .|+ ...|..+..++...|.
T Consensus 515 g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999 99999887652 124567788888999999999999999987764 376 4556666666655444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.16 Score=50.04 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=98.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
..+=..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|...|++..+.| +...+..|=..
T Consensus 22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 22 YYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 445556677899999999999999887 67788888888887 6 8999999999988775 34455555556
Q ss_pred HHH----cCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 432 FCN----NGDVDKACSVEEHMLEHGVYPE---EPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 432 ~~~----~G~~~~A~~l~~~M~~~gv~pd---~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
|.. .++.++|.+.|+...+.| |. ...+..|=..|.. .++.++|..+|++-.+.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 665 789999999999998876 43 6777788888877 78899999999998776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.26 Score=48.25 Aligned_cols=130 Identities=13% Similarity=0.030 Sum_probs=87.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|++..+.. |+... .| ..+-..|...|++++|.+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~--p~~~~---------------------~~-----------~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA--PNNVD---------------------CL-----------EACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHH---------------------HH-----------HHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHH---------------------HH-----------HHHHHHHHHcCCHHHHHH
Confidence 778888999998888877653 33221 12 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~--~~~A~~l~~~M~~~gi~Pd~~t--y~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.|++..+.. +-+..+|..+-..|...|+ .+.+...++... .|+... +..+=.++...|+.++|...|+...
T Consensus 110 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 110 MYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999988754 3467788888888876654 334455554432 343322 2223334556789999999999988
Q ss_pred hCCCCCCHHHHHHHH
Q 003768 450 EHGVYPEEPELEALL 464 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI 464 (796)
+. .|+......|.
T Consensus 185 ~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 185 LR--FPSTEAQKTLD 197 (208)
T ss_dssp TT--SCCHHHHHHHH
T ss_pred Hh--CCCHHHHHHHH
Confidence 74 48866554443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.062 Score=55.92 Aligned_cols=120 Identities=6% Similarity=-0.062 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
.+...+-.+...+...|++++|..+|++.... .| +...+..+-..+.+.|+.++|.++++...... |+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34456666777777888888888888877654 24 34566667777778888888888887776543 554433332
Q ss_pred HH-HHHhcCChhHHHHHHHHHHhCCCCCC-hh-HHHHHHHHHhchHHHHh
Q 003768 464 LR-VSVEAGKGDRVYYLLHKLRTSVRKVS-PS-TADVIAKWFNSKEAARL 510 (796)
Q Consensus 464 I~-~~~~~G~~~~A~~ll~~M~~~~~~~~-p~-t~~~I~~~~~~~~~~~a 510 (796)
.. .+...++.++|...|++.... .|. +. .++.-..+...+...+|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHH
Confidence 22 245667777777777777665 332 22 23334444445444444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.1 Score=46.90 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=79.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
..+-..+.+.|++++|.+.|++.... .|+ ...|..+...|...|++++|...+++..+.. ..+...|..+-..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 108 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence 55667788999999999999998875 466 6788999999999999999999999987652 2245677778888
Q ss_pred HHHcCChHHHHHHHHHHHhCC
Q 003768 432 FCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~g 452 (796)
|...|+.++|...|+...+..
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.025 Score=52.64 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...+..+...+...|++++|...|+...... ..+...|..+-.+|...|+.++|.+.|+...+.. .-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44566777888889999999999998877652 2245566667778888999999999999887754 124567777888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|...|+.++|...|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.066 Score=47.81 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=79.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. .-+...|..+-..|...
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 556677889999999999999987754 3467899999999999999999999999988763 22466788888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|...|+...+.
T Consensus 91 ~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 91 ESYDEAIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999987753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.073 Score=49.74 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...|..+-..+.+.|++++|...|++..+.. .-+...|..+-..|.+.|+.++|...|+...+.. .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667777777888888888887776542 1245566667777777888888888887777654 124667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 788888888888888877665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.094 Score=46.40 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...|..+-..+.+.|++++|...|++..+.. ..+...|..+-.+|.+.|+.++|...++...+.. .-+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788999999999999999987752 2356778888889999999999999999988754 2246788889999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|++++|...|++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.078 Score=48.40 Aligned_cols=91 Identities=13% Similarity=-0.058 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+...+.+.|++++|...|+...... ..+...|..+-..|.+.|+.++|...|+...... .-+...|..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444443321 1122333333344444455555555544444432 1122334444444455555
Q ss_pred hhHHHHHHHHHHh
Q 003768 473 GDRVYYLLHKLRT 485 (796)
Q Consensus 473 ~~~A~~ll~~M~~ 485 (796)
+++|...|+....
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.068 Score=48.14 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=24.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
+.+.|++++|++.|++..+.. +-+..+|+.+-.+|.+.|++++|++.+++..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555444321 2234444455555555555555555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.059 Score=56.31 Aligned_cols=128 Identities=12% Similarity=-0.076 Sum_probs=97.0
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVF 432 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~ 432 (796)
.....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+..... |+. ..+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 35667888999999999999988754 65546666667899999999999999844332 221 2344455678
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~ 491 (796)
...|+.++|+..|++.......|. ......+-.++.+.|+.++|..+|+++... .|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 899999999999999885444354 234555666778999999999999999987 555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.091 Score=48.73 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... .-+...|..+-.+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 445667888999999999999988754 4478889999999999999999999999987753 23456777788899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|.+.|+...+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.086 Score=48.13 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+.+.|++++|.+.|+...... +.+...|..+-.+|...|++++|...|+...... .-+...|..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3456778899999999999988754 4478889999999999999999999999988763 2345667778888999999
Q ss_pred hHHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEH 451 (796)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (796)
.++|.+.|+...+.
T Consensus 102 ~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 102 LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.14 Score=47.84 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=80.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|.+.|++..... +-+...|..+..+|.+.|++++|...|++..+.. .-+...|..+-..|...
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 556677889999999999999988754 3478899999999999999999999999988763 22467788888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|.+.|+...+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.38 Score=53.49 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=81.9
Q ss_pred hhHHHHHHhcc---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 356 EIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 356 n~lI~~~~k~g---~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+-..|.+.| +.++|++.|+...+.| .++...+..|-..|... ++.++|...|+... .|. ...+..|
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHHH
Confidence 55556666677 8888888888888877 44555555666666554 68888888888876 332 3333333
Q ss_pred HHH-H--HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 003768 429 LSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR 484 (796)
Q Consensus 429 I~~-~--~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G-----~~~~A~~ll~~M~ 484 (796)
=.. | ...++.++|.+.|+...+.| +...+..|=..|. .| +.++|...|.+-.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333 2 34788889999888888776 5666666666665 45 7888888887765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.034 Score=52.94 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=94.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV--FCN 434 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~--~~~ 434 (796)
..-..+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .|+.. +..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHh
Confidence 34556788999999999999876542 336788999999999999999999999886543 34332 3333221 223
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003768 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~ 491 (796)
.+....|...++...+.. | +...+..+-..+...|+.++|...|+++.+. .|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~ 140 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLG 140 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--Ccc
Confidence 233445788888887643 6 4788888999999999999999999999887 554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.11 Score=46.76 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPEL 460 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd----~~ty 460 (796)
.++..|=..+.+.|++++|...|++..+. .|+ ...|+.+=.+|.+.|+.++|.+.++...+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45666778899999999999999998765 344 5677778889999999999999999877532 1222 2467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (796)
..|=..+...|++++|.+.|++-... .+.|++...|.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 77778899999999999999998776 67777655544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.51 Score=51.11 Aligned_cols=122 Identities=7% Similarity=-0.002 Sum_probs=83.6
Q ss_pred hccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--CC-CcccHHHHHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALSVFC 433 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi--~P-d~~ty~~LI~~~~ 433 (796)
..|..+.|.+++.+... .+..+. ..++..|...|...|++++|..++++.... +. .| ...+|..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34677778777776543 333333 457778889999999999999998887543 11 11 1346777888888
Q ss_pred HcCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+..+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998776532 121 2 1 24556666667788899998888776643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=50.87 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g--i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.|++++|...|++....+ -+-+..+|..+-..|...|++++|...|++..+.. .-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777788887777654 12245567777777888888888888888776652 123455666667777778888888
Q ss_pred HHHHHHHhC
Q 003768 443 SVEEHMLEH 451 (796)
Q Consensus 443 ~l~~~M~~~ 451 (796)
+.++...+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.21 Score=43.92 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=75.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~ 430 (796)
+-..+.+.|++++|.+.|+......- .+. ..+..+..++.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 44567789999999999999887531 122 477778889999999999999999988753 44 345666778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
.+...|+.++|...|+...+.. |+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 8899999999999999988754 5543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.16 Score=55.18 Aligned_cols=168 Identities=6% Similarity=-0.142 Sum_probs=114.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceec-------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhcc
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g 366 (796)
+.+.|++++|.+.|.+..+..-........ ....++|+ ..+...|.+.|
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al------------------------~~l~~~y~~~~ 69 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI------------------------LELGQLYVTMG 69 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH------------------------HHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH------------------------HHHHHHHHHCC
Confidence 567789999999999988764222221111 11112222 66888999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-cccHHHHHHHHHHcC
Q 003768 367 AFQRGFEIYEKMCLD-EVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~-gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~----~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
++++|.+++..+... +..++. .+.+.+-..+...|+.++|..++.+... .+..+. ..++..|...|...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 999999999887652 111222 1223333333457889999999987653 233222 456777888999999
Q ss_pred ChHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLEH--GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~--gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+.++|..++++.... +. .+ ....|..++..|...|++++|..++++...
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999887643 21 12 245788899999999999999999987654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.28 Score=57.78 Aligned_cols=99 Identities=8% Similarity=0.040 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHHcCChHHHHH
Q 003768 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P--d~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
++.+.|..+|+...+. .+-+...|...++.....|+.+.|..+|+........+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999988875 34466677888888888999999999999876653211 34578888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
+.+.|.+.- |+......+++-|
T Consensus 563 v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhC--CCCcHHHHHHHHh
Confidence 999998864 6655545554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.4 Score=46.46 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCC--ChhhHHHHHhhhccCchhhhccCCCCCcchhh
Q 003768 206 DVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (796)
Q Consensus 206 ~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G--~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn 282 (796)
.-++|+++++.+.... |+ ...||.-=..+. ..| .+++++..++ .+... .-.+...|+
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~aW~ 107 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQIWN 107 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHHHH
Confidence 3468999999998653 43 445665555555 455 8999999985 33321 112333454
Q ss_pred hcccCccccccc----ccc---CChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccch
Q 003768 283 YGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 283 ~LI~~~~~~~~~----~~~---g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~ 355 (796)
.--.. + ... +++++++.+++.+.+.. .-.| +.|
T Consensus 108 ~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkny----------------------~aW-------- 147 (306)
T 3dra_A 108 YRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----PKNH----------------------HVW-------- 147 (306)
T ss_dssp HHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTCH----------------------HHH--------
T ss_pred HHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----CCCH----------------------HHH--------
Confidence 43332 2 222 67888888888887752 1111 111
Q ss_pred hhHHHHHHhccCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCCCcccHHH
Q 003768 356 EIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 356 n~lI~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
+----.+.+.|.++ ++++.+++|.+.. +-|-..|+----.+.+.+. ++++++.++.+..... -|...|+-
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHH
Confidence 11112223345555 8999999999865 4577888877767777776 8899999988877632 46677777
Q ss_pred HHHHHHHcCChHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~-A~~l~~~M~~~g--v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+-..+.+.|.... +.++.....+.+ -..+...+..|.+.|.+.|+.++|.++++.+.+.
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777777444 445666554432 1357788999999999999999999999999874
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.071 Score=60.09 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=89.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...+++..+.. .-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999888753 3458899999999999999999999999988762 234567788888999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPE-EPELEALLRV--SVEAGKGDRVYYLLH 481 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd-~~ty~~LI~~--~~~~G~~~~A~~ll~ 481 (796)
+|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988753 32 2334444333 788899999999887
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.1 Score=55.71 Aligned_cols=142 Identities=11% Similarity=-0.013 Sum_probs=99.4
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
.|..+-.. +.+.|++++|...|++..... |+...+......+.... ....| ..+-
T Consensus 149 ~~~~~g~~------~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~------~~~~~-----------~nla 203 (336)
T 1p5q_A 149 IVKERGTV------YFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQAL------RLASH-----------LNLA 203 (336)
T ss_dssp HHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHH------HHHHH-----------HHHH
T ss_pred HHHHHHHH------HHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHH------HHHHH-----------HHHH
Confidence 35555555 888999999999999887653 33211100000000000 01122 6677
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
..|.+.|++++|.+.|++..... +.+..+|..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988764 447889999999999999999999999998775 34 455677777788888888
Q ss_pred HHH-HHHHHHHH
Q 003768 439 DKA-CSVEEHML 449 (796)
Q Consensus 439 ~~A-~~l~~~M~ 449 (796)
++| ..+|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888 44666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.11 Score=46.23 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~ 437 (796)
-..+.+.|++++|...|++..... +-+...|..+-.++...|+.++|...|++..+. .| +...+..+-..|...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 345667778888888887777643 336667777777777888888888888776654 23 34455566667777777
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.63 Score=51.71 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC---ChhhHHHHHhhhccCchhh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG---SGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G---~~~~A~~vf~~~~~~s~em 269 (796)
.+..|-..|...+.++++........+.-...+...+..|=..|. +.| +.++|...|. ..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~----------~~g~~~~~~~A~~~~~-------~a 205 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ----------KKQQPEQQAELLKQME-------AG 205 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH----------HTTCHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HcCCcccHHHHHHHHH-------HH
Confidence 444455555566644444444333332222222335666666666 456 7778888874 33
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
.+. |-.+...+..|-.. +.......+++++|...|+... .|. ...+
T Consensus 206 a~~-g~~~a~~~~~Lg~~--y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~--------------------------- 251 (452)
T 3e4b_A 206 VSR-GTVTAQRVDSVARV--LGDATLGTPDEKTAQALLEKIA-PGY---PASW--------------------------- 251 (452)
T ss_dssp HHT-TCSCHHHHHHHHHH--HTCGGGSSCCHHHHHHHHHHHG-GGS---THHH---------------------------
T ss_pred HHC-CCHHHHHHHHHHHH--HhCCCCCCCCHHHHHHHHHHHc-CCC---HHHH---------------------------
Confidence 322 22222211222111 0000333467888888888765 331 1111
Q ss_pred ccccchhhHHHH-H--HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC
Q 003768 350 DNQDADEIRLSE-D--AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 350 ~~~~~~n~lI~~-~--~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-----~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+=.. | ...++.++|++.|++..+.| +...+..|-..|. .| +.++|...|++.. .| +
T Consensus 252 ------~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~ 317 (452)
T 3e4b_A 252 ------VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---E 317 (452)
T ss_dssp ------HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---C
T ss_pred ------HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---C
Confidence 222222 2 34789999999999999887 6778888888887 55 9999999998765 32 3
Q ss_pred cccHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
...+..|=..|.. ..+.++|...|+.-.+.|. ......|-..|.. ..+.++|...|..-.+.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 4444444444444 2399999999999888774 2333444444442 44778888888888776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.21 Score=44.37 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVS 467 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~ 467 (796)
+-.+...+.+.|++++|...|++..+. .| +...|..+=..+...|+.++|...|+...+.. | +...+..|-..|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 344566788999999999999998875 34 55666667778889999999999999988754 5 567788888999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...|+.++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.21 Score=56.22 Aligned_cols=115 Identities=7% Similarity=-0.003 Sum_probs=86.8
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+.+.|++++|...|++..+. .|+. ..| ..+-..|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~---------------------------------~~lg~~~~~~g~~~~A~ 60 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYY---------------------------------GNRSLAYLRTECYGYAL 60 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHH---------------------------------HHHHHHHHHhcCHHHHH
Confidence 78899999999999988765 2332 222 67778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHH--HHHcCChHHHHHHHH
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~--~~~~G~~~~A~~l~~ 446 (796)
+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.|++..+. .|+ ...+..+-.+ +.+.|+.++|.++++
T Consensus 61 ~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 61 GDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998864 346789999999999999999999999998765 233 3344444444 788899999999988
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.054 Score=49.07 Aligned_cols=128 Identities=15% Similarity=0.040 Sum_probs=89.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...+++..+..-. ++. ...+ .++ ..+-..|...|++++|.
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~-----------~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDK-------AAER-----------IAY-----------SNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCH-------HHHH-----------HHH-----------HHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCc-------hHHH-----------HHH-----------HHHHHHHHHcCCHHHHH
Confidence 77889999999999877653100 000 0000 112 66777888999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHHcCChHHHH
Q 003768 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty~~LI~~~~~~G~~~~A~ 442 (796)
+.|++.... +-.+ ...++..+...+...|++++|...+++..+. +-.+ ....+..+-..+...|+.++|.
T Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 999987642 1111 1457888889999999999999999887643 2111 1345667778888999999999
Q ss_pred HHHHHHHh
Q 003768 443 SVEEHMLE 450 (796)
Q Consensus 443 ~l~~~M~~ 450 (796)
+.+++..+
T Consensus 150 ~~~~~a~~ 157 (164)
T 3ro3_A 150 HFAEKHLE 157 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.12 Score=58.43 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=89.4
Q ss_pred HHHhccCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cccHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLD---EVP---MN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG 426 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~---pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ty~ 426 (796)
.+-..|++++|..++++..+. -+. |+ ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456788999999999876642 122 22 457899999999999999999999876532 2 1233 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLE-----HGVY-PEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~-pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|-..|...|+.++|..++++..+ .|-. |+. .+.+.|-.++...+.+++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999998887643 2411 222 23345555566778888999999888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.058 Score=47.47 Aligned_cols=87 Identities=17% Similarity=0.072 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGI--NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi--~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
..|++++|...|++..+.+. .-+...|..+-..|...|+.++|.+.|+...+.. .-+...+..+-.++.+.|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999887641 2235677778888999999999999999998864 12467788888999999999999
Q ss_pred HHHHHHHHhC
Q 003768 477 YYLLHKLRTS 486 (796)
Q Consensus 477 ~~ll~~M~~~ 486 (796)
...|.+....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988766
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.5 Score=48.77 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=60.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G 436 (796)
+-..+.+.|++++|.+.|++..... +-+...|..+..+|.+.|++++|...+++..+. .| +...|..+-.+|...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4455667777777777777766542 236667777777777777777777777766543 33 3455666666777777
Q ss_pred ChHHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLE 450 (796)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (796)
+.++|...|+...+
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.28 Score=45.55 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=55.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLD-------EV----------PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-------gi----------~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
..=..+.+.|++++|.+.|.+.... .- +.+...|..+..+|.+.|++++|...++...+.. .
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p 94 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-E 94 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-C
Confidence 3445677889999999999876653 10 1123456666666666666666666666655442 1
Q ss_pred CCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 420 Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
-+...|..+-.+|...|+.++|...|+...+
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2344455555555566666666666655554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.00 E-value=1.6 Score=46.02 Aligned_cols=227 Identities=8% Similarity=0.015 Sum_probs=149.3
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC- 236 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G--~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~- 236 (796)
+.+....++|+.+++.+.... |+ +...||.-=..+...| ++++++++++.+....-+ +...|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--AS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 344445568999999986532 11 2367887777777888 999999999999976432 344555443333
Q ss_pred ---HccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChH--HHHHHHHHHH
Q 003768 237 ---SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKE 311 (796)
Q Consensus 237 ---~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~--~A~~lf~eM~ 311 (796)
...+ ..++.++++..++ .+... .-.|-..|+---.. +.+.|.++ ++++.+++|.
T Consensus 115 ~~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 115 QIMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp HHHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHH
Confidence 3111 2367888888884 44433 33355666665555 55667777 8999999998
Q ss_pred HcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccC------HHHHHHHHHHHHhCCCCC
Q 003768 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 312 ~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~------~~~A~~lf~~M~~~gi~p 385 (796)
+.... |-..| +----.+.+.+. ++++++.++++.... +-
T Consensus 174 ~~d~~-N~sAW---------------------------------~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~ 218 (306)
T 3dra_A 174 DTDLK-NNSAW---------------------------------SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQ 218 (306)
T ss_dssp HHCTT-CHHHH---------------------------------HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred HhCCC-CHHHH---------------------------------HHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CC
Confidence 76321 11111 111111122233 789999999888764 56
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~-A~~l~~~M~~~g--i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
|...|+-+-..+.+.|+... +..+..+..+.+ -..+...+..+...|++.|+.++|.++++.+.+
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 89999999888888888554 444555554332 123556777788899999999999999999876
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.21 Score=52.10 Aligned_cols=132 Identities=11% Similarity=-0.042 Sum_probs=90.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|.++|+.+...+ |+.+.. -.+-..+.+.+++++|+.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~---------------------------------~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVA---------------------------------WMKAVVYGAAERWTDVID 156 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 667788888888887665533 322111 233347788999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 374 lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.|+...... .|. ...+..|=.++...|++++|+..|++.......|... .....-.++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998544321 111 2367778888999999999999999987543325432 33345556778999999999999999
Q ss_pred hCCCCCCHHHHHHH
Q 003768 450 EHGVYPEEPELEAL 463 (796)
Q Consensus 450 ~~gv~pd~~ty~~L 463 (796)
+.. |+...+.+|
T Consensus 236 a~~--P~~~~~~aL 247 (282)
T 4f3v_A 236 TTH--PEPKVAAAL 247 (282)
T ss_dssp HHS--CCHHHHHHH
T ss_pred hcC--CcHHHHHHH
Confidence 865 664444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.42 Score=53.27 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=94.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+-..|.+.|++++|...|++.....-... ..+|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 350 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 350 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc
Confidence 5556778889999999999998876421111 5789999999999999999999999987753 235
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLR 484 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~-ll~~M~ 484 (796)
...|..+-.+|...|+.++|...|+...+.. | +...+..|-..+.+.|+.+++.+ ++..|-
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888999999999999999988743 5 34566777777777787776653 444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.88 E-value=1.2 Score=42.65 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=85.3
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC--------------cccH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LRSY 425 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd--------------~~ty 425 (796)
+....|.+++|.+.++.-... ..-....+..+-..+...|++++|...|++..+..- .|+ ...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334444555555544321111 001234566777888999999999999999876421 121 2577
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-.+|.+.|+.++|...++...+.. ..+...|..+-.+|...|++++|...|++....
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 778888899999999999999988753 236778888889999999999999999998776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.77 Score=41.82 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=90.1
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCCh
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDV 438 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~ 438 (796)
.-.++.++|++.|++..+.| .|+.. |-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34457899999999999988 34433 6666777788999999999988875 44556656666776 7899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
++|.+.|+.-.+.| +...+..|=..|.. .++.++|..+|++-.+.
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999998876 56777777778877 78999999999988877
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.38 Score=52.09 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=75.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..+-..+.+.|++++|.+.|++..+. --+-+..+|..+..+|.+.|++++|...+++..+. .|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 55666788889999999999877651 01123456777777777778888888777776654 23
Q ss_pred -CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 003768 421 -RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 421 -d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A 476 (796)
+...|..+-.+|...|+.++|.+.|+...+.. | +...+..|-..+...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777766543 4 344444454444444444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.46 Score=49.02 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
+...+..+...+.+.|++++|...|++..+. .| +...|..+-..|.+.|+.++|.+.++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888889999999999999999998775 34 56777778888999999999999999988753 23567888889
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+|...|++++|...|.+....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.37 Score=40.84 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...|..+-..+...|++++|...|++..+.. ..+...|..+-.++.+.|+.++|.+.++...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666666777777777777777665542 123455555666666777777777777776653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.36 Score=41.81 Aligned_cols=79 Identities=15% Similarity=-0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.+.|++..... +-+...+..+...|...|++++|...|++..+.. ..+...|..+-..|...|+.++|...|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666655432 3356677777777777777777777777766542 1223455555566666677777666666554
Q ss_pred h
Q 003768 450 E 450 (796)
Q Consensus 450 ~ 450 (796)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=7.6 Score=41.54 Aligned_cols=233 Identities=9% Similarity=-0.050 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCCCcchhhh
Q 003768 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY 283 (796)
Q Consensus 205 G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~ 283 (796)
...++|+++++.+....- -+...||.-=..+. ..| .+++++..++ .+... .-++...|+.
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW~h 128 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVWHH 128 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHHHH
Confidence 345689999999986541 23445665544554 345 5888888884 33332 2224445655
Q ss_pred cccCcccccccccc-C-ChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHH
Q 003768 284 GSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (796)
Q Consensus 284 LI~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~ 361 (796)
--.. +.+. + ++++++.+++.+.+.. .-.| +-|.+. --++..
T Consensus 129 R~wl------L~~l~~~~~~~EL~~~~k~L~~d----pkNy----------------------~AW~~R-----~wvl~~ 171 (349)
T 3q7a_A 129 RLLL------LDRISPQDPVSEIEYIHGSLLPD----PKNY----------------------HTWAYL-----HWLYSH 171 (349)
T ss_dssp HHHH------HHHHCCSCCHHHHHHHHHHTSSC----TTCH----------------------HHHHHH-----HHHHHH
T ss_pred HHHH------HHHhcCCChHHHHHHHHHHHHhC----CCCH----------------------HHHHHH-----HHHHHH
Confidence 4444 3333 4 6678888887776542 1111 111111 222333
Q ss_pred HHhcc-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 362 DAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 362 ~~k~g-----~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-------~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
+.+.. .++++++.++++.+.. +-|...|+-.-..+.+.+. ++++++.+++..... .-|...|+-+-
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr 249 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLR 249 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 32221 2358999999998865 4588899988888888776 688888888877652 23556666555
Q ss_pred HHHHHcCCh--------------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 430 SVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 430 ~~~~~~G~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
..+.+.|.- ....++..++...+ -.+....+.-|.+.|...|+.++|.++++.+.
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555543 22333333333221 14678888999999999999999999999998
Q ss_pred hCCCCCChhHH
Q 003768 485 TSVRKVSPSTA 495 (796)
Q Consensus 485 ~~~~~~~p~t~ 495 (796)
+....+..+-|
T Consensus 330 ~~~dpir~~yw 340 (349)
T 3q7a_A 330 SEYDQMRAGYW 340 (349)
T ss_dssp HTTCGGGHHHH
T ss_pred hhhChHHHHHH
Confidence 66333333333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.82 E-value=2.1 Score=39.30 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC---------CC-CcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------gi---------~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..+...-..+.+.|++++|...|.+.... .- .| +...|..+-.+|.+.|+.++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566677888999999999999887654 00 11 235677788889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. ..+...|..+-.+|...|++++|...|.+....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 235778889999999999999999999998876
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.56 Score=52.99 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=71.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC---c
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL-----DE-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPR---L 422 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~-----~g-i~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd---~ 422 (796)
+.|...|...|++++|..++++... .| -.|+ ..+|+.|...|...|++++|..++++..+. -+-|| +
T Consensus 355 ~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 355 SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 8889999999999999999987664 22 1233 457999999999999999999999876532 12233 2
Q ss_pred -ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 423 -RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 423 -~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.+.+.|-.++...+..++|..++..+.+
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444566677889999999988865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.33 Score=51.76 Aligned_cols=126 Identities=9% Similarity=-0.006 Sum_probs=68.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
..+-..+.+.|++++|...|++.... .|+.. .|..+..+|.+.|++++|...+++..+..
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556677889999999999987653 24433 67778888888888888888888776642
Q ss_pred CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 003768 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 418 i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~-~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+...|..+-.+|...|+.++|.+.|+...+. .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 224566777777888888888888888877553 24432 33333333 12345566667777766544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=91.26 E-value=3.3 Score=37.49 Aligned_cols=115 Identities=11% Similarity=-0.019 Sum_probs=87.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
..-.+++++|...|.+-.+.|- |+. . +=..|...+.+++|++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a------------------------------------~-lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFG------------------------------------C-LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTH------------------------------------H-HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhh------------------------------------h-HHHHHHcCCCHHHHHH
Confidence 4445677888998888888762 111 1 1122334457888999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCChHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~~~A~~l~ 445 (796)
.|++-.+.| +...+..|-..|.. .++.++|+..|+.-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998886 67888888888988 899999999999998876 34556666667777 78999999999
Q ss_pred HHHHhCC
Q 003768 446 EHMLEHG 452 (796)
Q Consensus 446 ~~M~~~g 452 (796)
+.-.+.|
T Consensus 121 ~~Aa~~g 127 (138)
T 1klx_A 121 EKACRLG 127 (138)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 9888876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=91.23 E-value=1.7 Score=34.96 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...+..+-..+...|++++|...|++..+.. ..+...+..+-..+.+.|+.++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455566666667777777777776665542 123445555556666667777777666666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.49 E-value=0.94 Score=53.60 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
......|++++|+++.+.+ .+...|..|.+.+.+.|+++.|.++|..+.. |..+...|...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence 4456778999998886543 4678999999999999999999999987643 455666666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
+..++-+.....| -++.-..+|.+.|++++|.+++.++.
T Consensus 725 ~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 725 GLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7666655555544 12334444556677777777666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=90.19 E-value=3.4 Score=45.79 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------cccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----------------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+|.+.|+.++|...++...+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456777888999999999999999988764 233 47788888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 54 236778888999999999999999999999876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=89.99 E-value=1.4 Score=37.97 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 405 ~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
.|...|++..+.. .-+...|..+-..|...|+.++|...|+...+.. ..+...|..|-..|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2345677778888999999999999999988754 2346788889999999999999999999887
Q ss_pred hC
Q 003768 485 TS 486 (796)
Q Consensus 485 ~~ 486 (796)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=89.78 E-value=1.4 Score=37.20 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...+..+-..|...|++++|...|++..+.. .-+...|..+-.+|...|+.++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777888888888888887776652 12345666677777777888888777776554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.63 Score=39.30 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=53.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
..+-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...+++..+. .|+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 556667888999999999999988753 347788999999999999999999999998764 4553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=7.7 Score=41.49 Aligned_cols=224 Identities=11% Similarity=-0.001 Sum_probs=137.5
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G-~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
+.+.....+|+++++.+..... + +...||.-=..+...| ++++++++++.+....- -+...|+.--..+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP--~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~- 134 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP--A-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD- 134 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT--T-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHHHHHhCc--h-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH-
Confidence 4455566789999999865431 1 2367787666777778 59999999999997643 35667776655555
Q ss_pred cccCCcccCCC-C-ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChH--------HHHHHHH
Q 003768 239 AAVGVVKPAKS-G-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN 308 (796)
Q Consensus 239 ~~~~~~~~~k~-G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~--------~A~~lf~ 308 (796)
+. + +.+++++.++ .+... .-.|...|+--... +.+.|.++ ++++.++
T Consensus 135 ---------~l~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 135 ---------RISPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp ---------HHCCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------HhcCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence 22 4 5678888874 44432 33355556554444 33334444 7777887
Q ss_pred HHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccC-------HHHHHHHHHHHHhC
Q 003768 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD 381 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~-------~~~A~~lf~~M~~~ 381 (796)
+|.+.... |...| +-.-..+.+.+. ++++++.++++...
T Consensus 192 k~I~~dp~-N~SAW---------------------------------~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 192 EMLRVDGR-NNSAW---------------------------------GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHCTT-CHHHH---------------------------------HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHH---------------------------------HHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 77775321 11122 222222222222 68899999888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHcC
Q 003768 382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~G 436 (796)
. +-|...|+-+-..+.+.|.. ....+...++...+ -.+......-|...|+..|
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 4 45888998877777777664 12222222222111 0245556667888999999
Q ss_pred ChHHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLE 450 (796)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (796)
+.++|.++++.+.+
T Consensus 317 ~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 317 RVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=89.26 E-value=3 Score=44.88 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv 453 (796)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|+.++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666778899999999999999987751 0122 34677778888999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+...|..+-.+|...|++++|...|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 225778888889999999999999999998876
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.45 E-value=6.8 Score=42.21 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=93.3
Q ss_pred hhHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChHHHHHHHHHHHH----CCCCC
Q 003768 356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS----LGINP 420 (796)
Q Consensus 356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~---~g--~~~~A~~l~~~M~~----~gi~P 420 (796)
...+.+... ...+.+|..+|++..+. .|+ ...|..+.-+|.. .+ .......+-..+.. ..-..
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 566655443 23468999999998875 354 3455544444431 11 11111111111111 12245
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~ 500 (796)
+..+|..+-..+...|+.++|...++.....+ |+...|..+=..+.-.|+.++|.+.+++-... .|.+.|+..++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~ 351 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIEN 351 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhC
Confidence 67788777667777899999999999999986 88888877778888999999999999988877 777777765554
Q ss_pred H
Q 003768 501 W 501 (796)
Q Consensus 501 ~ 501 (796)
+
T Consensus 352 l 352 (372)
T 3ly7_A 352 G 352 (372)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=88.23 E-value=3.3 Score=33.18 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=50.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
..+-..+.+.|++++|.+.|++..... +.+..++..+...+.+.|++++|...|++..+.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445567788999999999999988753 346778999999999999999999999998765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=87.71 E-value=6.9 Score=36.86 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=68.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR 421 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----gi~Pd 421 (796)
.=..+.+.|++++|.+.|++.....-. | +. ..|+.+-.++.+.|++++|+..+++..+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 334567789999999999987764211 1 22 38888888888999999998888877653 12454
Q ss_pred c-ccH----HHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003768 422 L-RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (796)
Q Consensus 422 ~-~ty----~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~ty~~ 462 (796)
- ..| ...=.++...|+.++|.+.|+...+ .|+.+.......
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2 234 4444566667777777777766543 244444444333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=1.5 Score=48.44 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 003768 399 SMGDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~---gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~LI 464 (796)
+.|++++|..++++..+. -+-|+ ..+++.|...|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344555555555555432 11122 235555555555566666666555544321 1 1122 23456666
Q ss_pred HHHHhcCChhHHHHHHHH
Q 003768 465 RVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~ 482 (796)
..|...|++++|..++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 666666666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=86.30 E-value=9.6 Score=42.69 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=85.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~ 432 (796)
-..+..+-+.+.+++|..+|+.....+ .+...|- +.+...+ .++.+.|..+|+...+.- |+. ..+...|...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 334555556778999999999882222 2334443 3333322 336999999999887642 332 2345567777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.|+.+.|..+|+... .....|...++.=...|+.+.+..+++++...
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 78899999999999973 35788888888888889999999989888753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=2.4 Score=46.99 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHH
Q 003768 401 GDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~---gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~LI~~ 466 (796)
|++++|..++++..+. -+-|+ ..+|+.|-..|...|++++|..++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554331 12222 355666666666666666666666655431 2 1122 2456667777
Q ss_pred HHhcCChhHHHHHHHHH
Q 003768 467 SVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M 483 (796)
|...|++++|..++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 77777777777777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=85.96 E-value=8.2 Score=36.36 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------c-----ccHHHHHHHHHHcCChHHHHHHHHHHHhC----
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--------~-----~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---- 451 (796)
.+...-..+.+.|++++|...|++..+. .|+ . ..|+.+=.++.+.|+.++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445556778899999999999987764 233 2 27888888999999999999999998874
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 452 -gv~pd~-~ty----~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.|+. ..| ..+=.++...|++++|...|++..+-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 225754 456 67778889999999999999987653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=85.95 E-value=1.8 Score=36.48 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=50.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677889999999999999988764 33567899999999999999999999988654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.87 E-value=2.3 Score=45.00 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc------------------cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~------------------ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.+..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677788899999999999987654 34433 677788888999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 236778899999999999999999999988654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.54 E-value=7.9 Score=37.11 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
.+-....|+++.|.++-+++ -+...|..|-+.....|+++-|.+.|.... -|..|.--|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCH
Confidence 34456789999999998887 368999999999999999999999998753 356677778888998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
++-.++-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 88776665555544 2455566667789999999988654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=85.00 E-value=6.6 Score=44.03 Aligned_cols=89 Identities=8% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL 460 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~-----LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty 460 (796)
...|-..++..-+.++++.|..+|+.. .. |. .++.. .+...+ .++.+.|..+|+...+.- |+ ...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 356777777777788999999999988 22 32 23332 333222 347999999999988753 33 4456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
...++...+.|+.+.|..+|++.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66788888899999999999997
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=2 Score=47.48 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cc
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR 423 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ 423 (796)
.+..+.+.|++++|.+++++..+. . +.|+ ..+++.|..+|...|++++|+.++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 1 2222 458899999999999999999999987642 2 2233 45
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+|+.|=..|...|+.++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788888899999999999999988765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=3.5 Score=45.56 Aligned_cols=87 Identities=7% Similarity=-0.084 Sum_probs=67.3
Q ss_pred hccCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cccHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCL---DEVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPAL 429 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~p---d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ty~~LI 429 (796)
..|++++|..++++..+ .-+.| + ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999987664 22223 2 368999999999999999999999987542 2 2233 45788888
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 003768 430 SVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..|...|+.++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=82.97 E-value=4.3 Score=33.39 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-.+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34566777888888887776643 23455 6777777777778888888887776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=81.55 E-value=11 Score=44.23 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=57.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|- |+....+|.+.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~ 749 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHc
Confidence 8888999999999999999998864 45677777778888877766665555543 46666667777
Q ss_pred CChHHHHHHHHH
Q 003768 436 GDVDKACSVEEH 447 (796)
Q Consensus 436 G~~~~A~~l~~~ 447 (796)
|++++|.+++.+
T Consensus 750 g~~~~a~~~~~~ 761 (814)
T 3mkq_A 750 GDIQGAKDLLIK 761 (814)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777666544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.12 E-value=4.5 Score=38.11 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCCC-cccHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGD----------MAFDMVKRMKSLGINPR-LRSYGPAL 429 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~----------~A~~l~~~M~~~gi~Pd-~~ty~~LI 429 (796)
...+.+.+++|.+.++...+.. +-+...|+.+-.++...++++ +|...|++..+. .|+ ...|..+=
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3456778899999999888764 447778887777777776654 666666665544 343 34555555
Q ss_pred HHHHHcC-----------ChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 430 SVFCNNG-----------DVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 430 ~~~~~~G-----------~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.+|...| ++++|.+.|+...+. .|+...|
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 5555543 555555555555542 2544444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 796 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.13 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 95.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.76 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 95.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 95.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.2 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.85 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 94.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 94.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.17 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 94.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 93.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 93.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 93.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 92.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 91.72 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 90.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 90.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 89.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 86.63 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 85.85 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 85.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 84.84 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 83.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 82.87 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 82.8 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.1e-07 Score=99.37 Aligned_cols=284 Identities=12% Similarity=0.015 Sum_probs=185.8
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
.-+.|+.++|.+.++++.+.. | -+...+..+-..|.+.|++++|+.+|++..+.. +-+..+|..+-.++.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~--p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~-- 78 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK-- 78 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh--
Confidence 346789999999999986542 1 134788888899999999999999999998753 235678888888888
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccC----------------------------cccc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP----------------------------MIDK 291 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~----------------------------~~~~ 291 (796)
+.|++++|...+. ..... ...+...+...... ....
T Consensus 79 --------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (388)
T d1w3ba_ 79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred --------hhccccccccccc-------ccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7799999999884 22221 11100000000000 0000
Q ss_pred ccccccCChHHHHHHHHHHHHcCCCCCccee-c--------cchhhhHHhhhhcC---CCC-cccccccccccccchhhH
Q 003768 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 292 ~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty-~--------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~l 358 (796)
......+....+...+....... |+.... . .+...+|...+.+. .|+ ...| ..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~l 209 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY-----------INL 209 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH-----------HHH
T ss_pred ccccccchhhhhHHHHHHhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH-----------HHH
Confidence 01222333334444433333321 222111 1 56666666666654 333 2334 566
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~ 437 (796)
-..+...|++++|...|+...... ..+...+..+...+.+.|++++|...|++..+. .|+ ..+|..+-..+...|+
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~ 286 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred hhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 677788888888888888877654 345667777888888888888888888887664 343 4567777778888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++|.+.++...... ..+...+..+...+.+.|++++|...|++..+.
T Consensus 287 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888776543 356677778888888888888888888887654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.2e-06 Score=89.14 Aligned_cols=290 Identities=12% Similarity=0.004 Sum_probs=198.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+...+.. | -+..+|..+...|.+.|++++|+..+..+.+.........+.........
T Consensus 42 ~~~~~~~~~~A~~~~~~al~~~--p-----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T d1w3ba_ 42 IHFQCRRLDRSAHFSTLAIKQN--P-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence 3446789999999999986542 1 13478899999999999999999999999876433222222111111110
Q ss_pred cccCC-----------------------cccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCcccccccc
Q 003768 239 AAVGV-----------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESN 295 (796)
Q Consensus 239 ~~~~~-----------------------~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~ 295 (796)
..... ......+....+...+. ..... .-.+...+..+... +.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~ 180 (388)
T d1w3ba_ 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FN 180 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHH-------Hhhcc-CcchhHHHHhhccc------cc
Confidence 00000 00112333334443332 11111 11133445555555 67
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcc-eec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHH
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGH-MKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSED 362 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~-ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~ 362 (796)
..|.+++|...+++..+. .|+.. .|. .++.++|...+... ..+...+ ..+-..+
T Consensus 181 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~ 247 (388)
T d1w3ba_ 181 AQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVY 247 (388)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH-----------HHHHHHH
Confidence 778888888888776654 24432 221 66777777776665 2333334 5677788
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.+.|++++|.+.|++..+.. +-+..+|..+...+...|+.++|...++..... ...+...+..+...+.+.|+.++|.
T Consensus 248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHH
Confidence 89999999999999988753 345778999999999999999999999987765 3456678888889999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 443 SVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 443 ~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|++..+. .|+ ...|..|-..|.+.|++++|...|++..+.
T Consensus 326 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 326 RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998764 354 567888889999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.5e-06 Score=84.16 Aligned_cols=238 Identities=12% Similarity=0.049 Sum_probs=170.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcc
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~ 279 (796)
.+.+.|++++|+..|+++.+.. +-+..+|..+-.++. ..|+.++|...|. ..... .-.+..
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~ 88 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCLEL-KPDNQT 88 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCChHHHHHHHH-------hhhcc-cccccc
Confidence 4678999999999999999753 224678888877777 7899999999995 22221 111455
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
.|..+... |...|++++|.+.+++..... |+....... ..... ...+...+ .-.+
T Consensus 89 ~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~-~~~~~-----~~~~~~~~-----------~~~~ 143 (323)
T d1fcha_ 89 ALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHLVTP-AEEGA-----GGAGLGPS-----------KRIL 143 (323)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------------CTT
T ss_pred cccccccc------ccccccccccccchhhHHHhc--cchHHHHHh-hhhhh-----hhcccccc-----------hhhH
Confidence 57777777 999999999999999887643 332221000 00000 00000001 1233
Q ss_pred HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~ 437 (796)
..+.+.+...+|.+.|.+.... .-.++..++..+...+...|++++|...|++.... .|+ ...|..+-..|.+.|+
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhccccccc
Confidence 4455667788899999877653 23456788889999999999999999999998765 243 5667778888999999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++|.+.|+...+.. | +...|..|-.+|.+.|++++|...|++..+
T Consensus 222 ~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 222 SEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999988743 5 466788899999999999999999988655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.5e-05 Score=75.54 Aligned_cols=232 Identities=9% Similarity=-0.071 Sum_probs=158.0
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+...+.. | -+...|..+-..|.+.|++++|+..|.+..+.. +-+...|..+...+.
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~--P-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 98 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD--P-----KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 98 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc-
Confidence 3557899999999999986532 1 235789999999999999999999999998653 224667777777777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhcc-CCCCCcch-------hhhcccCccccccccccCChHHHHHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQ-------LDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~-~gv~d~~t-------yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
..|+.++|.+.+. +.... ........ +..+.........+...+.+++|...|.+.
T Consensus 99 ---------~~~~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 99 ---------NESLQRQACEILR-------DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccccccccccchh-------hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 7899999999985 22211 00000000 000000000011123334455555555554
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
.... |+.. +...+ ..+-..+...|++++|...|++..... +-+..+|
T Consensus 163 l~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 209 (323)
T d1fcha_ 163 VRLD--PTSI-------------------DPDVQ-----------CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 209 (323)
T ss_dssp HHHS--TTSC-------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHh--hccc-------------------ccccc-----------hhhHHHHHHHHHHhhhhcccccccccc-cccccch
Confidence 4321 2111 11112 556677888999999999999987653 3357789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..+-..|...|++++|.+.|++..+. .|+ ...|..+-..|.+.|+.++|.+.|+..++
T Consensus 210 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 210 NKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765 344 55677888899999999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.86 E-value=0.00061 Score=69.61 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=96.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
...+..+.+.|.+++|.++|+...+.+.. +...|-..... +...|+.+.|..+|+.+.+. ..-+...|...+..+.+
T Consensus 138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 138 IQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Confidence 66677777888899999999988776532 33334333332 34468899999999988875 33345678888888889
Q ss_pred cCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~g-v~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+++.|+.+|+...... ..|+ ...|...+..-...|+.+.+..+.+++.+.
T Consensus 216 ~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999877653 4443 467888888888889999999999888765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=0.00096 Score=68.06 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=70.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC--cccHHHHHHHHHHcCChH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR--LRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd--~~ty~~LI~~~~~~G~~~ 439 (796)
...|+.+.|..+|+.+... .+-+...|...++.+.+.|+.+.|..+|++.... +..|+ ...|...+..-...|+++
T Consensus 180 ~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~ 258 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 3457889999999988875 3456788999999999999999999999997765 34454 346888888878899999
Q ss_pred HHHHHHHHHHh
Q 003768 440 KACSVEEHMLE 450 (796)
Q Consensus 440 ~A~~l~~~M~~ 450 (796)
.+.++++.+.+
T Consensus 259 ~~~~~~~r~~~ 269 (308)
T d2onda1 259 SILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.0049 Score=61.66 Aligned_cols=276 Identities=9% Similarity=-0.021 Sum_probs=173.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVLL 233 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi-~pd~----~tyn~LL 233 (796)
.....|+.++|.+++++-...- |+.........++.+-..|...|++++|+..|++.....- .++. ..+..+-
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4557889999999999875432 2210011134677777889999999999999999874311 1222 2333333
Q ss_pred HHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC----CcchhhhcccCccccccccccCChHHHHHHHHH
Q 003768 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (796)
Q Consensus 234 ~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (796)
..+. ..|++..+...+.-. .++....... ....+..+-.. +...|+++.+...+..
T Consensus 99 ~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 99 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 158 (366)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHH----HHHhHhcccchhhHHHHHHHHHHHH------HHHhcchhhhHHHHHH
Confidence 4444 678888888877411 1111111111 11224444444 7788999999999888
Q ss_pred HHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh----CCCCC
Q 003768 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM 385 (796)
Q Consensus 310 M~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p 385 (796)
.....-..+.... + ..+ ..+...+...+...++...+.+... .+..+
T Consensus 159 ~~~~~~~~~~~~~-------~-----------~~~-----------~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 159 GIEVLSSYQPQQQ-------L-----------QCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp HHHHTTTSCGGGG-------H-----------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhhhhhhhH-------H-----------HHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 7765322111111 0 011 4445566777888888888876554 12111
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCC
Q 003768 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYPE 456 (796)
Q Consensus 386 --d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~----~gv~pd 456 (796)
....+..+...+...|+.++|...+..........+ ...+..+-..+...|+.++|...++.... .+..|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence 233566777788899999999999987554322212 23445567788899999999999988753 354454
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 457 E-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 457 ~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
. ..+..+-..|.+.|+.++|.+.|.+-..
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 4667777889999999999999987543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.012 Score=59.95 Aligned_cols=213 Identities=7% Similarity=-0.051 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCC-ChhhHHHHHhhhccCchhhh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~ 270 (796)
.|+.+=..+.+.+..++|+++++.+++. .|+ ...|+..-.++. ..| ++++|+..+. ...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----------~l~~~~~eal~~~~-------~al 105 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 105 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHH----------HhCcCHHHHHHHHH-------HHH
Confidence 3444444567788999999999999985 344 446666666665 444 5899998885 222
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
.. .-.+..+|+.+-.. +.+.|++++|...++++.+.. |+- ...|
T Consensus 106 ~~-~p~~~~a~~~~~~~------~~~l~~~~eAl~~~~kal~~d--p~n---------------------~~a~------ 149 (315)
T d2h6fa1 106 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AKN---------------------YHAW------ 149 (315)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TTC---------------------HHHH------
T ss_pred HH-HHhhhhHHHHHhHH------HHhhccHHHHHHHHhhhhhhh--hcc---------------------hHHH------
Confidence 21 12255667777666 888899999999998887752 221 1122
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCC-Ccc
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINP-RLR 423 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~gi~P-d~~ 423 (796)
+-+...+.+.|++++|++.|+.+.+.. +-+...|+.+-..+.+.+. +++|++.+....+. .| +..
T Consensus 150 -----~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~ 221 (315)
T d2h6fa1 150 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 221 (315)
T ss_dssp -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchH
Confidence 666777888899999999999998864 3467788877777776665 56788888776654 34 344
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE 469 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~-pd~~ty~~LI~~~~~ 469 (796)
.|+-+-. +......+++.+.++...+.... .+...+..+...|..
T Consensus 222 ~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 222 AWNYLKG-ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHH-HHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 5554433 44455567788888777654322 245566777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.053 Score=53.60 Aligned_cols=238 Identities=14% Similarity=-0.000 Sum_probs=152.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~g 274 (796)
..+...|++++|+++|++..+..-.-+ ...++.+-.++. ..|++++|...|... .++....+
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~~~ 85 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 85 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHhhc
Confidence 346789999999999999886421111 234444545555 779999999999511 11111111
Q ss_pred CC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcC---CCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 275 v~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G---i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
-. ....+..+... +...|++..+...+.+..... ..+.... .+. .+
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~-------~~~-----------~~----- 136 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPM-------HEF-----------LV----- 136 (366)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-------HHH-----------HH-----
T ss_pred chHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhcccchhhH-------HHH-----------HH-----
Confidence 11 12234445555 788899999988887654321 0000000 000 01
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR 421 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd 421 (796)
..+-..+...|+++.|...+...... +......++..+...+...++...+...+.+.... +..+.
T Consensus 137 ------~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 210 (366)
T d1hz4a_ 137 ------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 210 (366)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred ------HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence 34456678889999999999887753 33344567777888888999999999888776542 11111
Q ss_pred --cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 422 --LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 422 --~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~---pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
...+..+...+...|+.++|.+.+......... .....+..+-..+...|+.++|...++....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223455666778899999999999876554222 2245566778889999999999999998753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.027 Score=56.20 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=78.7
Q ss_pred hccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc------cHHHHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SYGPALSVF 432 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~------ty~~LI~~~ 432 (796)
..|++++|.+.|++... .+..+. ..+|..+...+...|++++|..+|++........... .|..++..+
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence 45889999998887643 222221 3467889999999999999999999987653222111 123344566
Q ss_pred HHcCChHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCChhHHHHHHHHHH
Q 003768 433 CNNGDVDKACSVEEHMLEHGVY-PE---EPELEALLRVSVE--AGKGDRVYYLLHKLR 484 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~-pd---~~ty~~LI~~~~~--~G~~~~A~~ll~~M~ 484 (796)
...|+.+.|...++...+.... ++ ......|+.++-. .+.+++|..-|+.+.
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 6789999999999988764311 12 2345667777654 234667777776543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.017 Score=52.24 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=73.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
+.|.+.|++++|...|.+..+.. +-+...|..+-.+|...|++++|...|+...+.. .-+...|..+..+|...|+.+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 45678889999999998888764 4577888888889999999999999998887653 224468888888888999999
Q ss_pred HHHHHHHHHHhCC
Q 003768 440 KACSVEEHMLEHG 452 (796)
Q Consensus 440 ~A~~l~~~M~~~g 452 (796)
+|.+.+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999888887754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.022 Score=48.71 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=58.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.+.+.|++++|..+|++..+.. +-+...|..+-.+|.+.|++++|...+....+.. ..+...|..+-.++...|+.++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 3556677777777777766543 3456667777777777777777777777766552 2345566666666777777777
Q ss_pred HHHHHHHHHh
Q 003768 441 ACSVEEHMLE 450 (796)
Q Consensus 441 A~~l~~~M~~ 450 (796)
|...|+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.041 Score=55.76 Aligned_cols=170 Identities=7% Similarity=-0.030 Sum_probs=121.4
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhcc-CHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g-~~~~A~ 372 (796)
+.+.+..++|+.++++..+. .|+-.+. | +..-..+...| ++++|+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~l--nP~~~~a---------------------~-----------~~r~~~l~~l~~~~~eal 98 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIEL--NAANYTV---------------------W-----------HFRRVLLKSLQKDLHEEM 98 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHH--CTTCHHH---------------------H-----------HHHHHHHHHTTCCHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHH--CCCChHH---------------------H-----------HHHHHHHHHhCcCHHHHH
Confidence 66778888888888888775 3444332 2 44444555555 589999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+.++...... +-+..+|..+-..+.+.|+.++|+..++.+.+.. .-+...|..+-..+.+.|+.++|.+.++.+.+..
T Consensus 99 ~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 99 NYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 9999887653 3468899999999999999999999999988752 2346788888888999999999999999998854
Q ss_pred CCC-CHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHh
Q 003768 453 VYP-EEPELEALLRVSVEAGK------GDRVYYLLHKLRTSVRKVS-PSTADVIAKWFN 503 (796)
Q Consensus 453 v~p-d~~ty~~LI~~~~~~G~------~~~A~~ll~~M~~~~~~~~-p~t~~~I~~~~~ 503 (796)
| +...|+.+-..+.+.+. .++|...+...... .|. ++.+.-+..++.
T Consensus 177 --p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~ 231 (315)
T d2h6fa1 177 --VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ 231 (315)
T ss_dssp --TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT
T ss_pred --CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 4 56677766655655554 46788888777665 333 234443444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.011 Score=51.54 Aligned_cols=105 Identities=9% Similarity=-0.029 Sum_probs=72.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCc-ccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~ 431 (796)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ .++|..+|++.....-.|+. .+|..|=.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 556777788888888888888877754 4567777778888876554 44688888877655433332 245556667
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
|.+.|+.++|.+.|+...+. .|+-.....+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 77888888888888888774 3665444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.07 Score=49.79 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=97.1
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.+...|++++|++.|.++ ..|+..+|..+-.+|...|++++|.+.|++..+.. .-+...|..+=.+|.+.|+.++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 346788999999999864 35788889999999999999999999999988753 2345677777788889999999
Q ss_pred HHHHHHHHHhC------------CCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 003768 441 ACSVEEHMLEH------------GVY--PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (796)
Q Consensus 441 A~~l~~~M~~~------------gv~--pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p 492 (796)
|.+.|+.-... |+. ++ ..++..+-.++.+.|++++|.+.|...... .+.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 99999887642 111 11 244555666788999999999999988776 4444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.068 Score=49.89 Aligned_cols=98 Identities=7% Similarity=-0.104 Sum_probs=75.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------CCCCc-
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG------------INPRL- 422 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g------------i~Pd~- 422 (796)
.-+=..|.+.|++++|.+.|++-.+.. +-+...|..+-.+|.+.|+.++|...|++-.... +....
T Consensus 40 ~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~ 118 (192)
T d1hh8a_ 40 FNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccc
Confidence 456677889999999999999988754 4567899999999999999999999999876531 11111
Q ss_pred --ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003768 423 --RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (796)
Q Consensus 423 --~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~ 454 (796)
.++..+=.++.+.|++++|.+.+.........
T Consensus 119 ~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 119 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22334556788999999999999887765433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.069 Score=45.40 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=78.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
-..+.+.|++++|..+|.+..+.. +-+...|..+=.+|.+.|+.++|.+.+....+.. ..+...|..+-.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 356788999999999999988762 2345668888889999999999999999998765 35778899999999999999
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
++|...|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.028 Score=51.98 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=69.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~ 438 (796)
+.|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+ +.|+ ..+|..+-.+|.+.|+.
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~ 88 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESY 88 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCH
Confidence 45678889999999998877653 45778888888899999999999999988754 3564 55677788888888999
Q ss_pred HHHHHHHHHHHh
Q 003768 439 DKACSVEEHMLE 450 (796)
Q Consensus 439 ~~A~~l~~~M~~ 450 (796)
++|...|+...+
T Consensus 89 ~~A~~~~~~al~ 100 (201)
T d2c2la1 89 DEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.17 Score=48.28 Aligned_cols=124 Identities=11% Similarity=-0.019 Sum_probs=93.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
+=..|.+.|++++|.+.|++..... +-+..+|+.+-.+|.+.|++++|...|++..+. .|+ ..+|..+-..|...|
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHh
Confidence 3456788999999999999988753 346789999999999999999999999998875 343 456777778889999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.|+...+.. | +......+..++.+.+..+.+..+.......
T Consensus 120 ~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999888754 4 3444334444455566666666665555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.065 Score=49.33 Aligned_cols=98 Identities=12% Similarity=-0.053 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (796)
|+...+--.=..|.+.|++++|...|.+..+.. +-+...|+.+-.+|.+.|++++|...|+...+. .| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 555556666678999999999999999877652 235566777888999999999999999998764 46 46788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~ 485 (796)
-.+|.+.|++++|...|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.11 Score=46.33 Aligned_cols=91 Identities=10% Similarity=-0.039 Sum_probs=76.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
-..|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|.+.|+...+.. .-+...|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 346779999999999999988763 2355667777788999999999999999998764 23557899999999999999
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999876
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.24 E-value=0.043 Score=46.41 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.+.+.|++++|...|++..... +-+..+|..+-.++.+.|++++|...|+...+.. +-+...|..+-..|...|+.++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3456677777777777766543 2256667777777777777777777777665542 1234555555566666666666
Q ss_pred HHHHHHHH
Q 003768 441 ACSVEEHM 448 (796)
Q Consensus 441 A~~l~~~M 448 (796)
|.+.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.22 Score=47.47 Aligned_cols=88 Identities=10% Similarity=-0.038 Sum_probs=69.4
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
|-+.|++++|...|++.... .|+.. .+| +.+=..|.+.|++++|.+
T Consensus 47 y~~~g~~~~A~~~~~~al~l--~p~~~---------------------~a~-----------~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAI--RPDMP---------------------EVF-----------NYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCCH---------------------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHhhcc--CCCCH---------------------HHH-----------hhhchHHHHHHHHHHhhh
Confidence 77889999999999887764 34432 112 667778899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
.|++..+.. +-+..++..+..+|...|+.++|...|+...+.
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999988753 234567888889999999999999999987765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.85 E-value=0.27 Score=45.23 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhHHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-----SVRKVSPSTADV 497 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~-----~~~~~~p~t~~~ 497 (796)
..+..+...+.+.|+.++|...++.+.+.. .-+...|..|+.+|.+.|+.++|.+.|++++. -+..|++.+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 345567777778888888888888877643 23677788888888888888888888877643 344455545444
Q ss_pred HHH
Q 003768 498 IAK 500 (796)
Q Consensus 498 I~~ 500 (796)
...
T Consensus 147 ~~~ 149 (179)
T d2ff4a2 147 NER 149 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=94.42 E-value=0.29 Score=43.46 Aligned_cols=102 Identities=16% Similarity=-0.004 Sum_probs=51.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g----i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+.+.+.|++++|...|.+....- -.++..... -...+ ...+|+-+-.+|.+.
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKNI-------EISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhhH-------HHHHHhhHHHHHHHh
Confidence 45678899999999998876521 111111100 00000 112344444455555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|+.++|.+.++...+.. +.+...|..+-.++...|++++|...|+.....
T Consensus 81 ~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555554432 124455555555555555555555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.072 Score=45.99 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYPEE-PELEALLRV 466 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G---~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~ 466 (796)
..|++.+...+++++|.+.|+.....+ ..+..++.-+-.++.+.+ +.++|.++++......-.|+. ..|..|=.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467888899999999999999988753 234566666666777654 556799999998876533332 367778888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
|.+.|++++|...|++..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999886
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.17 Score=43.51 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=61.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-----cccHHHHHHHHH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-----LRSYGPALSVFC 433 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd-----~~ty~~LI~~~~ 433 (796)
+.|.+.|++++|.+.|.+..+.+ +-+..+|..+-.+|.+.|++++|...++++.+..- .+. ..+|..+=..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999888887754 34678888888888888888888888888765310 011 124444445556
Q ss_pred HcCChHHHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLE 450 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~ 450 (796)
..+++++|.+.|..-..
T Consensus 91 ~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 66677777777765543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.28 E-value=0.12 Score=43.55 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=73.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G 471 (796)
+-..+.+.|++++|...|++.... .| +...|..+-..+.+.|+.++|...|+...+.. +-+...|..|-..|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 344677899999999999998876 35 46777878888999999999999999988754 235788889999999999
Q ss_pred ChhHHHHHHHHH
Q 003768 472 KGDRVYYLLHKL 483 (796)
Q Consensus 472 ~~~~A~~ll~~M 483 (796)
+.++|.+.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.17 E-value=0.18 Score=46.49 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=80.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhC--CCC-CC------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLD--EVP-MN------------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~--gi~-pd------------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi 418 (796)
......|++++|.+.|.+-..- |-. ++ ...+..+...+.+.|++++|...++.+....
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH- 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence 4567889999999999987762 321 11 1457888999999999999999999998762
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003768 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (796)
Q Consensus 419 ~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~t 459 (796)
.-+...|..++.+|.+.|+.++|.+.|+.+.. -|+.|...+
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34778899999999999999999999998743 599998765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.46 Score=46.60 Aligned_cols=131 Identities=7% Similarity=-0.074 Sum_probs=88.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHC----CCCC-Cccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEV-PMNEASLTAVGRMAMS-MGDGDMAFDMVKRMKSL----GINP-RLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi-~pd~~ty~~LI~~~~~-~g~~~~A~~l~~~M~~~----gi~P-d~~t 424 (796)
+-+-..|.+.|++++|.+.++.... .|- .....++..+...|-. .|++++|...+++..+. +-.+ -..+
T Consensus 81 ~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~ 160 (290)
T d1qqea_ 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhH
Confidence 4455667778888888888875543 221 1113456666666644 69999999999876532 2211 1345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-----d~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|..+...|...|+.++|.++|+......... .. ..|..++..+...|+.+.|...|++....
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7778889999999999999999987653211 11 12334444566789999999999988765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.26 Score=44.64 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=48.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDE-VPMN-------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g-i~pd-------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
+.+.+.|++++|.+.|.+....- ..+. ..+|+.+..+|.+.|++++|+..++...+.. +-+...|
T Consensus 21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~ 99 (170)
T d1p5qa1 21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 99 (170)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhh
Confidence 36778899999999998776421 0110 1334445555555555555555555544431 1134444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.-+-.+|...|++++|...|+...+
T Consensus 100 ~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 100 SRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.61 E-value=0.48 Score=47.27 Aligned_cols=236 Identities=7% Similarity=-0.093 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH---HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-tyn~---LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.+..++...-+....++|+++++..... .|+-. .|+. ++...... +..+...|.+++|+..+. .
T Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~---~~~~~~~~~~~~al~~~~-------~ 98 (334)
T d1dcea1 31 ATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETE---KSPEESAALVKAELGFLE-------S 98 (334)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHH-------H
Confidence 3444444333334458999999999864 46644 3433 22222210 000113345667777774 2
Q ss_pred hhccCCCCCcchhhhcccCccccccccc--cCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCccccc
Q 003768 269 LGDSRDMDNNGQLDYGSSPMIDKLESNS--SYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 269 m~~~~gv~d~~tyn~LI~~~~~~~~~~~--~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
.... .-.+...|..+-.+ +.. .+++++|...+.++.+.. |+ ...+
T Consensus 99 ~l~~-~pk~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~----------------------- 146 (334)
T d1dcea1 99 CLRV-NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD--ERNFHCW----------------------- 146 (334)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHTCSSCCHHHHHHHHHHHHHHC--TTCHHHH-----------------------
T ss_pred HHHh-CCCcHHHHHHhhHH------HHHhccccHHHHHHHHHHHHhhC--chhhhhh-----------------------
Confidence 2221 11244445554444 333 345788888888887652 22 1111
Q ss_pred ccccccccchhhHH-HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------------------
Q 003768 346 DWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGD-------------------- 404 (796)
Q Consensus 346 ~~~~~~~~~~n~lI-~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~-------------------- 404 (796)
...+ ..+...+..++|+..++...... +-+...|+.+-..+.+.|+.+
T Consensus 147 ----------~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (334)
T d1dcea1 147 ----------DYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 215 (334)
T ss_dssp ----------HHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH
Confidence 1111 33344556666666666555543 234555555555555555544
Q ss_pred ----------HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh
Q 003768 405 ----------MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKG 473 (796)
Q Consensus 405 ----------~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~ 473 (796)
++...+...... -.++...+..+...+...|+.++|.+.+.+..... | +...|..+-..|...|+.
T Consensus 216 ~~~~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 216 QNAFFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp HHHHHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGH
T ss_pred HHHHHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCH
Confidence 333333333332 22344555566777778888999998888776543 3 345667778888999999
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
++|.+.+++..+.
T Consensus 293 ~eA~~~~~~ai~l 305 (334)
T d1dcea1 293 KETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.3 Score=41.88 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=76.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEALLRV 466 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd----~~ty~~LI~~ 466 (796)
+=..+.+.|++++|...|.+..+.+ +.+...|..+-.+|.+.|++++|.+.++.+++.. .... ..+|..|-..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3356889999999999999988763 2356778888899999999999999999987531 1111 2467777788
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
+...+++++|...|.+-... ...++..
T Consensus 89 ~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 88999999999999887655 4455533
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.42 Score=43.15 Aligned_cols=92 Identities=14% Similarity=-0.008 Sum_probs=74.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCC-------------cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLG-INPR-------------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EE 457 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g-i~Pd-------------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~ 457 (796)
.=..+.+.|++++|...|.+....- ..+. ..+|+-+-.+|.+.|++++|...++..++.. | +.
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~ 96 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNE 96 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--ccch
Confidence 3457888999999999998876541 1111 2456667778899999999999999988864 5 78
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|..+-.+|...|++++|...|++..+.
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88899999999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.54 E-value=0.073 Score=52.64 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=78.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.+.|++++|.+.|++-.+.. +-|...+..|...++..|++++|...|+...+. .|+.......+.... .+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll------~a~ 77 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------KAA 77 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------HHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH------Hhc
Confidence 46799999999999998875 568899999999999999999999999998765 455332222222111 122
Q ss_pred HHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 443 SVEEHMLEH----GVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 443 ~l~~~M~~~----gv~--p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-..++... .+. | +...+......+.+.|+.++|..++.+..+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 223333221 111 2 2233344455677889999999999988776
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.72 E-value=5.4 Score=39.89 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=43.6
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
...+.+..+.|..++..+ .-|..++..+.+.+++..|.+++.... +..+|--++.+|.
T Consensus 23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhC---------------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 444778888999999988 678889999999999999988876542 5678888888887
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=91.72 E-value=1.3 Score=38.89 Aligned_cols=52 Identities=4% Similarity=-0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-h-HHHHHHHHHhchHHHHhc
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-S-TADVIAKWFNSKEAARLG 511 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p-~-t~~~I~~~~~~~~~~~a~ 511 (796)
.+|+.+-.+|.+.|++++|.+.+++.... .|.- . .+..-..+...+...+|.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~ 121 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAK 121 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHH
Confidence 46677777888888888888888887765 3322 2 334455555555444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.93 E-value=0.73 Score=41.12 Aligned_cols=92 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--------------CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLD--------------EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--------------gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
.-..+.+.|++++|.+.|.+..+. -+. .+...|..+-.++.+.|++++|+..+.+..+.. +-+.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~ 111 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 111 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh
Confidence 345567889999999988776431 000 122334444445555555555555555544331 1223
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..|..+-.+|.+.|+.++|.+.|+...+
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444455555555555555554444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=90.19 E-value=2.4 Score=37.50 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHHHhccCHHHHHHHHHHHHh---CCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCL---DEVPMN-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~---~gi~pd-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
..+.+.|++++|...|.+... ....++ ..+|+.+-.+|.+.|++++|+..++...+.. +.+...|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHH
Confidence 456788999999999976543 111111 2345555666666777777777776665542 2345556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
..+-.+|...|++++|.+.|+...+.
T Consensus 102 ~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 102 YRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666667777777777666653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.76 E-value=0.14 Score=51.59 Aligned_cols=215 Identities=7% Similarity=-0.100 Sum_probs=115.4
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSA 239 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G--~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~a~~~~ 239 (796)
.+...+|+..++...... +-+...|..+-.++...+ +.++|+..+..+.... +++...+..++ ..+-
T Consensus 86 ~~~~~~al~~~~~~l~~~-------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~-- 155 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQ-- 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhC-------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHH--
Confidence 344567888888875432 113356776666666665 4789999999988753 23455554444 3333
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
..|..++|...+. ..... +..+...|+.+-.. +.+.|++++|...+...... .|+
T Consensus 156 --------~~~~~~~Al~~~~-------~~i~~-~p~~~~a~~~l~~~------~~~~~~~~~A~~~~~~~~~~--~~~- 210 (334)
T d1dcea1 156 --------AAVAPAEELAFTD-------SLITR-NFSNYSSWHYRSCL------LPQLHPQPDSGPQGRLPENV--LLK- 210 (334)
T ss_dssp --------TCCCHHHHHHHHH-------TTTTT-TCCCHHHHHHHHHH------HHHHSCCCCSSSCCSSCHHH--HHH-
T ss_pred --------hccccHHHHHHHH-------HHHHc-CCCCHHHHHHHHHH------HHHhcCHHHHHHHHHHhHHh--HHH-
Confidence 5688888988884 33322 22245556655555 55555554442211110000 000
Q ss_pred ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (796)
Q Consensus 320 ~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (796)
...+...+...+..+++...+....... +++...+..+...+..
T Consensus 211 -----------------------------------~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 211 -----------------------------------ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTV 254 (334)
T ss_dssp -----------------------------------HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHH
Confidence 0112222333444455555555554432 2334445555566666
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 400 MGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.|+.++|...+.+..+. .| +...|..+-..|...|+.++|.+.++...+
T Consensus 255 ~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 255 LQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666654333 12 234444555566666777777777776665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.63 E-value=5.7 Score=39.73 Aligned_cols=213 Identities=8% Similarity=-0.019 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 189 Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
||..--..+.+-|-+.|.++.|..+|..+.. |.-++..+. +.++...|.+++. .
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v----------~l~~~~~avd~~~-------k 65 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLV----------HLGEYQAAVDGAR-------K 65 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHH----------TTTCHHHHHHHHH-------H
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHH----------hhccHHHHHHHHH-------H
Confidence 3434455566777799999999999987653 566777777 6677777777763 0
Q ss_pred hhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccc
Q 003768 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 269 m~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
. .+.-+|.-+... +.+......|. +...++ ..++..+
T Consensus 66 ~------~~~~~~k~~~~~------l~~~~e~~la~-----i~~~~~-----------~~~~d~l--------------- 102 (336)
T d1b89a_ 66 A------NSTRTWKEVCFA------CVDGKEFRLAQ-----MCGLHI-----------VVHADEL--------------- 102 (336)
T ss_dssp H------TCHHHHHHHHHH------HHHTTCHHHHH-----HTTTTT-----------TTCHHHH---------------
T ss_pred c------CCHHHHHHHHHH------HHhCcHHHHHH-----HHHHHh-----------hcCHHHH---------------
Confidence 0 022233333333 33222222111 101100 1111111
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+|..|-..|.+++...+++..... -..+...+|-|+..|++.+. + ++.+.++... +.....-+
T Consensus 103 -------~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~---kl~e~l~~~s---~~y~~~k~ 167 (336)
T d1b89a_ 103 -------EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q---KMREHLELFW---SRVNIPKV 167 (336)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---HHHHHHHHHS---TTSCHHHH
T ss_pred -------HHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---HHHHHHHhcc---ccCCHHHH
Confidence 55788888999999999999976543 25678889999999998653 3 3444443321 11222334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~g--------v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+..|-..+.+.++.-++..|.... -.++.......++.+.+.++.+...+++....+
T Consensus 168 ~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 168 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 444444444444444443332100 012222334455666777777766666665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=85.85 E-value=4.5 Score=35.04 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=57.3
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHHCC-CCCC----------cccHHHHHHHHHHcCChHHHHHHHHHHHhC----
Q 003768 389 SLTAV--GRMAMSMGDGDMAFDMVKRMKSLG-INPR----------LRSYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (796)
Q Consensus 389 ty~~L--I~~~~~~g~~~~A~~l~~~M~~~g-i~Pd----------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---- 451 (796)
+|..+ ...+...|++++|...|++-.+.. -.|+ ...|+.+-.+|.+.|++++|.+-+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 334445677777777776655321 1122 235566666677777777777776665431
Q ss_pred -CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 452 -GVYPEE-----PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 452 -gv~pd~-----~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
...++. ..|+.+-.+|...|++++|...|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221 2455566778888999998888887543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.62 E-value=1.9 Score=37.37 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=71.9
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCC-cccHHHHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------GDGDMAFDMVKRMKSLGINPR-LRSYGPALS 430 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----------g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~ 430 (796)
|-+.+.+++|.+.|+...+.. +-|..++..+-.+|... +.+++|...|++..+. .|+ ..+|..+=.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 456677999999999988764 45667777777777643 4457788888877654 343 345555545
Q ss_pred HHHHcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNG-----------DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G-----------~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|...| .+++|.+.|+...+ +.|+...|...|..+ .+|.++..+..+.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 554433 24666666766665 347766666555444 3455566555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.84 E-value=4.3 Score=35.61 Aligned_cols=93 Identities=14% Similarity=0.016 Sum_probs=71.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~--------------gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
.-..+.+.|++++|.+.|.+..+. .+.| +...|..+=.++.+.|+.++|...+...++.. .-+.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~ 111 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 111 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh
Confidence 445567889999998888776431 1112 23345556677888999999999999998754 2367
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|..+-.+|.+.|++++|...|++..+.
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=83.41 E-value=5.1 Score=34.65 Aligned_cols=92 Identities=7% Similarity=-0.033 Sum_probs=68.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDE-VPMN----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR- 421 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g-i~pd----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----gi~Pd- 421 (796)
-..+.+.|++++|++.|++-.+-. -.|+ ..+|+.+-.+|.+.|++++|..-+.+..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 345567799999999999887521 1122 468999999999999999999999887642 12222
Q ss_pred ----cccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 422 ----LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 422 ----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
...|+.+=.+|...|+.++|.+.|+...+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455566788899999999999988653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=82.87 E-value=11 Score=32.77 Aligned_cols=93 Identities=12% Similarity=-0.007 Sum_probs=71.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCC-------------cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSL-GINPR-------------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd-------------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
.-..+.+.|++++|...|.+.... ...+. ...|+-+-.+|.+.|+.++|...++...... +.+..
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~ 99 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 99 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHH
Confidence 345678899999999999875532 11111 1234445667889999999999999988754 35778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 459 ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|..+-.++...|++++|...|.+....
T Consensus 100 a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 100 GLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=82.80 E-value=0.22 Score=49.01 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=75.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
.-+.|++++|...+++-.+.. |+-. ..+ ..+...|+..|++++|.+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~---------------------~ar-----------~~La~lL~~~G~~e~A~~ 51 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDA---------------------SLR-----------SSFIELLCIDGDFERADE 51 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCH---------------------HHH-----------HHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCH---------------------HHH-----------HHHHHHHHHCCCHHHHHH
Confidence 345688999999888877652 3321 112 789999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 374 IYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 374 lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.|+...+.. |+ ...+..+...+...+..+++..-...-...+-.++...+......+.+.|+.++|.++++...+.
T Consensus 52 ~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 52 QLMQSIKLF--PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 999988753 43 34444444443333222222111110000011122344444556677889999999999988764
|