Citrus Sinensis ID: 003776
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 796 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L7V3 | 829 | Probable methyltransferas | yes | no | 0.996 | 0.956 | 0.677 | 0.0 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.948 | 0.980 | 0.622 | 0.0 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.958 | 0.990 | 0.622 | 0.0 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.972 | 0.864 | 0.535 | 0.0 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.699 | 0.945 | 0.505 | 1e-176 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.633 | 0.826 | 0.535 | 1e-171 | |
| Q9LN50 | 724 | Probable methyltransferas | no | no | 0.871 | 0.958 | 0.395 | 1e-164 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.635 | 0.741 | 0.463 | 1e-140 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.636 | 0.774 | 0.465 | 1e-138 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.603 | 0.691 | 0.461 | 1e-136 |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/832 (67%), Positives = 653/832 (78%), Gaps = 39/832 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA +YTR+D RR +S+YCSTVT+ VFVALCLVG+WMMTSSS V P QNVDE + + K
Sbjct: 1 MAQPRYTRIDNRRPSSNYCSTVTVVVFVALCLVGIWMMTSSS---VGPAQNVDEVSLDNK 57
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESK----- 115
K+Q+T E + Q+FED + P + KG + + + E S ++ N+E K
Sbjct: 58 DGIKKQMTPPAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKT 117
Query: 116 ---FDDGSNRQT-------QNDDNKT-----GDRDSKTD--SEGGETNTDESEKKSYSD- 157
F S ++ Q DD+K+ GD D K D E N D +EK++ +
Sbjct: 118 KEEFTPSSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPET 177
Query: 158 ---------ENGNKSDSDDGEKKSDRKSEESSG----EKVDGQVEEKEDQNENKESEKSS 204
EN + +SD+GEKKS ++SS K + E + + EN E+
Sbjct: 178 EDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDV 237
Query: 205 DDKKEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYN 264
++E SKN++S +L P GAQLEL NETT Q GSFSTQATESKNEKEAQ+ S + Y
Sbjct: 238 QVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGSGDKLDYK 297
Query: 265 WKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWP 324
W LCN TAG D+IPCLDN+QAI+ L STKHYEHRERHCP+ PPTCLVPLP+GYKR IEWP
Sbjct: 298 WALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHRERHCPDSPPTCLVPLPDGYKRPIEWP 357
Query: 325 TSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDV 384
SREKIWY NVPHTKLA+ KGHQNWVKVTGEYLTFPGGGTQFK+GALHYIDFIQESVP +
Sbjct: 358 KSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAI 417
Query: 385 AWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT 444
AWGKR+RVVLDVGCGVASFGGFLFDR V+TMS APKDEHEAQVQFALERGIPAISAVMGT
Sbjct: 418 AWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGT 477
Query: 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEI 504
RLPFPG VFD VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATPVYQK EDVEI
Sbjct: 478 TRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEI 537
Query: 505 WNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAA 564
W AMS+LIK MCWELVSI+KDTIN VG+A YRKPTSNECY+ RS+ PP+C SDDPNA+
Sbjct: 538 WKAMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNAS 597
Query: 565 WHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEH 624
W VPLQACMH PE+ +RGSQWPEQWPARLEK P+WL SSQ GVYGK+APEDF+ADYEH
Sbjct: 598 WKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEH 657
Query: 625 WKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIY 684
WKRVV+KSYLNG+GINW++VRNVMDMR+VYGGFAAA++D+ VWVMNV+ IDSPDTL IIY
Sbjct: 658 WKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIY 717
Query: 685 ERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744
ERGLFGIYHDWCESFSTYPR+YDLLHADHLFSK+K+RCNL AV+AEVDR+LRPEGKLIVR
Sbjct: 718 ERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVR 777
Query: 745 DDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
DD ETI ++E MVK M+WEVRMTYSK+KEGLL V+KS+WRP E+ET+ YAI
Sbjct: 778 DDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAIG 829
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/811 (62%), Positives = 611/811 (75%), Gaps = 56/811 (6%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEK- 59
MA GKY+RVDG++S S Y T+TI + V+LCLVG WM SS S+ P +++D A E+
Sbjct: 1 MAMGKYSRVDGKKS-SGYGLTITIVLIVSLCLVGAWMFMSSWSA---PTESIDFSANERT 56
Query: 60 ------KSEAK-EQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNE 112
KS+ K E++ ++S +++ E+ + K + +EN + E + E
Sbjct: 57 KDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGEENSGEKTESAEE 116
Query: 113 ESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEK-------KSYSDENGNKSDS 165
+FDD + + D K GD + T+SE ET E + D NG + ++
Sbjct: 117 RKEFDD----KNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKSEDSNGTEENA 172
Query: 166 DDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGA 225
+ E+ +++KSEE++GE + +EKS D +FP+G
Sbjct: 173 GESEENTEKKSEENAGET-------------EESTEKSKD--------------VFPAGD 205
Query: 226 QLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQA 285
Q E+T E++T G++STQ ES+NEK+AQ SS WK+CNVTAG D+IPCLDN QA
Sbjct: 206 QAEITKESSTGSGAWSTQLVESQNEKKAQVSS-----IKWKVCNVTAGPDYIPCLDNWQA 260
Query: 286 IKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKG 345
I+KL STKHYEHRERHCPEE P CLV LPEGYKRSI+WP SREKIWY N+PHTKLA++KG
Sbjct: 261 IRKLHSTKHYEHRERHCPEESPRCLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKG 320
Query: 346 HQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGG 405
HQNWVK++GEYLTFPGGGTQFKNGALHYIDF+QES PD+AWG RTRV+LDVGCGVASFGG
Sbjct: 321 HQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGG 380
Query: 406 FLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465
+LFDR VL +SFAPKDEHEAQVQFALERGIPA+S VMGT+RLPFPG VFD +HCARCRVP
Sbjct: 381 YLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVP 440
Query: 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525
WHIEGGKLLLELNR LRPGGFF+WSATPVY+K EDV IW AMS+L KAMCWEL++I KD
Sbjct: 441 WHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKD 500
Query: 526 TINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGS 585
+N+VG A+Y+KP SN+CY +RSQ +PP+C SDD NAAW+VPL+AC+HKV E+S +RG+
Sbjct: 501 ELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGA 560
Query: 586 QWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVR 645
WPE WP R+E P W L SQ GVYGK A EDFTAD+E WK +VSKSYLNGMGI+WS VR
Sbjct: 561 VWPESWPERVETVPQW-LDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVR 619
Query: 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRT 705
NVMDMR+VYGGFAAA+KD+ +WVMNV+ IDSPDTLPIIYERGLFGIYHDWCESFSTYPRT
Sbjct: 620 NVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRT 679
Query: 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR 765
YDLLHADHLFS +KKRCNLV V+AEVDRILRP+G IVRDD+ETI E+E MVK M+W VR
Sbjct: 680 YDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVR 739
Query: 766 MTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
MT+SKD EGLL V+KS WRP E ETI+ AIA
Sbjct: 740 MTHSKDGEGLLSVQKSWWRPTEAETIQSAIA 770
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/803 (62%), Positives = 609/803 (75%), Gaps = 40/803 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQE-K 59
MA GKY+RVDG++S SSY T+TI + ++LCLVG WM SS S+ P + + +
Sbjct: 1 MAMGKYSRVDGKKS-SSYGLTITIVLLLSLCLVGTWMFMSSWSA---PADSAGYSSTDTA 56
Query: 60 KSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDE--KSNEES--K 115
K +K L + + F D + E AT+ N +++ + E S E + NE S K
Sbjct: 57 KDVSKNDLRKEEGDRDPKNFSDEKNEENEAATE---NNQVKTDSENSAEGNQVNESSGEK 113
Query: 116 FDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRK 175
+ G R+ +D+N GD GE + E S SDE K + E + K
Sbjct: 114 TEAGEERKESDDNNGDGD---------GEKEKNVKEVGSESDETTQKEKTQLEESTEENK 164
Query: 176 SEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETTT 235
SE+ +G EEK ++N + E+E+S++ +SS E+FP+G Q E+T E++T
Sbjct: 165 SEDGNGN------EEKAEENAS-ETEESTE---------KSSKEVFPAGDQAEITKESST 208
Query: 236 QKGSFSTQATESKNEKEAQQSS--NQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTK 293
G++STQ ES+NEK+AQQSS Q+ Y WK CNVTAG D+IPCLDN QAIKKL +T
Sbjct: 209 GDGAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIPCLDNWQAIKKLHTTM 268
Query: 294 HYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVT 353
HYEHRERHCPEE P CLV LP+GYKRSI+WP SREKIWY NVPHTKLA+IKGHQNWVK++
Sbjct: 269 HYEHRERHCPEESPHCLVSLPDGYKRSIKWPKSREKIWYNNVPHTKLAEIKGHQNWVKMS 328
Query: 354 GEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVL 413
GE+LTFPGGGTQFKNGALHYIDFIQ+S P +AWG RTRV+LDVGCGVASFGG+LF+R VL
Sbjct: 329 GEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFERDVL 388
Query: 414 TMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKL 473
+SFAPKDEHEAQVQFALERGIPA+ VMGT+RLPFPG VFD +HCARCRVPWHIEGGKL
Sbjct: 389 ALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKL 448
Query: 474 LLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIA 533
LLELNR LRPGGFF+WSATPVY+K ED IW AMS+L KAMCW+LV+I KD +N+VG A
Sbjct: 449 LLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAA 508
Query: 534 VYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPA 593
+Y+KPTSN+CY KR Q +PP+C SDD NAAW+VPL+ACMHKV E+S +RG+ WP WP
Sbjct: 509 IYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWPE 568
Query: 594 RLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSV 653
R+E P W L SQ GVYGK APEDFTAD E WK +VSK+YLN MGI+WS VRNVMDMR+V
Sbjct: 569 RVETAPEW-LDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAV 627
Query: 654 YGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADH 713
YGGFAAA+KD+ +WVMNV+ +D+PDTLPIIYERGLFGIYHDWCESF+TYPRTYDLLHADH
Sbjct: 628 YGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLHADH 687
Query: 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKE 773
LFS ++KRCNLV+V+AE+DRILRP+G I+RDD+ET+ E+E MVK M+W+V+MT SKD E
Sbjct: 688 LFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQSKDNE 747
Query: 774 GLLCVEKSMWRPKELETIKYAIA 796
GLL +EKS WRP+E ETIK AIA
Sbjct: 748 GLLSIEKSWWRPEETETIKSAIA 770
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/904 (53%), Positives = 611/904 (67%), Gaps = 130/904 (14%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA G+ R + R S SSY ST+T+ +FVALC+ GVWM+ SS+SV+P Q +
Sbjct: 1 MAFGR-GRGNKRTSTSSYASTITMVIFVALCVFGVWML---SSNSVIPPQITQGSTRAAV 56
Query: 61 SEAK------------EQLTESNESSSNQQFEDNNADLPEDATKGGKNEK---------- 98
+E + E ES Q FEDN LP+DA K ++
Sbjct: 57 AETERSDVSASSNGNDEPEPTKQESDEQQAFEDNPGKLPDDAVKSEDEQRKSAKEKSETT 116
Query: 99 -----IQENIEKSDEKSNEESKFDDGSNRQT----------------------QNDD--- 128
QE + +D+K +EE + D+G QT Q D+
Sbjct: 117 SSKTQTQETQQNNDDKISEEKEKDNGKENQTVQESEEGQMKKVVKEFEKEQKQQRDEDAG 176
Query: 129 -----------------------NKTG-DRDSKTD---------SEGGETNTDESEKKSY 155
NK G ++DS TD + ET E+ + S
Sbjct: 177 TQPKGTQGQEQGQGKEQPDVEQGNKQGQEQDSNTDVTFTDATKQEQPMETGQGETSETSK 236
Query: 156 SDENGNKSDSDDGEKKSDRKSEESS--------GEKV----DGQVEEK------------ 191
++ENG + + G +++ +++EE + GEK +GQ EE
Sbjct: 237 NEENGQPEEQNSGNEETGQQNEEKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEE 296
Query: 192 ----EDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATES 247
+D+N ++ E+ + K E GS+ F SG + E+ + S+ +QATES
Sbjct: 297 ESTSKDENMEQQEERKDEKKHEQGSEASG----FGSG----IPKESAESQKSWKSQATES 348
Query: 248 KNEKEAQQSSNQ-----QNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHC 302
K+EK+ Q S + +G W LCN TAG D+IPCLDN +AI KLRS +H+EHRERHC
Sbjct: 349 KDEKQRQTSESNTVERIMDGNAWVLCNATAGTDYIPCLDNEEAIMKLRSRRHFEHRERHC 408
Query: 303 PEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGG 362
PE+PPTCLVPLPEGYK +I+WP SR+KIWY+NVPHTKLA++KGHQNWVKVTGE+LTFPGG
Sbjct: 409 PEDPPTCLVPLPEGYKEAIKWPESRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGG 468
Query: 363 GTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDE 422
GTQF +GALHYIDF+Q+S+ ++AWGKRTRV+LDVGCGVASFGGFLF+R V+ MS APKDE
Sbjct: 469 GTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVGCGVASFGGFLFERDVIAMSLAPKDE 528
Query: 423 HEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLR 482
HEAQVQFALER IPAISAVMG++RLPFP VFD +HCARCRVPWH EGG LLLELNR+LR
Sbjct: 529 HEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLLLELNRMLR 588
Query: 483 PGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNE 542
PGG+F+WSATPVYQKL EDV+IW MS L K++CWELV+I+KD +N +G A+Y+KP +NE
Sbjct: 589 PGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAIYQKPATNE 648
Query: 543 CYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWL 602
CYEKR +PP+C +DD NAAW+VPLQACMHKVP +ERGS+WP WP RL+ PYWL
Sbjct: 649 CYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWL 708
Query: 603 LSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMK 662
SSQ+G+YGK AP DFT DYEHWK VVSK Y+N +GI+WS VRNVMDMR+VYGGFAAA+K
Sbjct: 709 NSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAALK 768
Query: 663 DISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722
D+ VWVMNV++I+SPDTLPIIYERGLFGIYHDWCESFSTYPR+YDLLHADHLFSK++ RC
Sbjct: 769 DLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRC 828
Query: 723 NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSM 782
NLV V+AEVDRI+RP GKLIVRD+ I E+E+M+K + W+V +T+SK +EG+L +K
Sbjct: 829 NLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWDVHLTFSKHQEGILSAQKGF 888
Query: 783 WRPK 786
WRP+
Sbjct: 889 WRPE 892
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/578 (50%), Positives = 385/578 (66%), Gaps = 21/578 (3%)
Query: 216 SSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQ----SSNQQNGYNWKLCNVT 271
S N FP + T K + + +++ Q+ +S + W LC
Sbjct: 27 SDNARFPFPSLSTTDYYTPIPKSPIPHRIVDVSSDQTPQKMKLNTSLEVGELKWDLCKGA 86
Query: 272 AGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIW 331
D+IPCLDN AIK+L+S +H EHRERHCPE P CL+PLP+ YK + WP SR+ IW
Sbjct: 87 ESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSPKCLLPLPDNYKPPVPWPKSRDMIW 146
Query: 332 YYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTR 391
Y NVPH KL + K QNWVK GE+L FPGGGTQFK G HY++FI++++P + WGK R
Sbjct: 147 YDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPSIKWGKNIR 206
Query: 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451
VVLDVGCGVASFGG L D+ V+TMSFAPKDEHEAQ+QFALERGIPA +V+GT++L FP
Sbjct: 207 VVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPS 266
Query: 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQL 511
FD +HCARCRV W +GGK LLELNRVLRPGGFFIWSATPVY+ D IWN M L
Sbjct: 267 NAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRDSRIWNEMVSL 326
Query: 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQA 571
K++CW++V+ + D+ + +G+ +Y+KPTS CY KRS Q PP+C + N +W+VPL
Sbjct: 327 TKSICWKVVTKTVDS-SGIGLVIYQKPTSESCYNKRSTQDPPLC-DKKEANGSWYVPLAK 384
Query: 572 CMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSK 631
C+ K+P +++ WPE WP RL +S + E D E W VS
Sbjct: 385 CLSKLPSGNVQ---SWPELWPKRLVSVKPQSISVKA--------ETLKKDTEKWSASVSD 433
Query: 632 SYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGI 691
YL + +NWSTVRNVMDM + +GGFAAA+ ++ +WVMNV+ +D PDTL ++Y+RGL G+
Sbjct: 434 VYLKHLAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGV 493
Query: 692 YHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETIN 751
YHDWCES +TYPRTYDLLH+ L + +RC +V VVAE+DRI+RP G L+V+D++ETI
Sbjct: 494 YHDWCESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIM 553
Query: 752 ELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELE 789
+LES++ + W ++ ++ L K WRP + E
Sbjct: 554 KLESILGSLHWSTKIY----EDRFLVGRKGFWRPAKPE 587
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 601 bits (1550), Expect = e-171, Method: Compositional matrix adjust.
Identities = 280/523 (53%), Positives = 364/523 (69%), Gaps = 19/523 (3%)
Query: 264 NWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEW 323
+WK C D+IPCLDN +AIKKL+S ++ EHRERHCPE P CLVPLP+ YK + W
Sbjct: 106 DWKRCE---SPDYIPCLDNTKAIKKLKSKRNMEHRERHCPERSPKCLVPLPQHYKVPLPW 162
Query: 324 PTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPD 383
P SR+ IWY NVPH KL + K QNWV+ +G + FPGGGTQFK+G +HYI+FIQ+++P
Sbjct: 163 PQSRDMIWYDNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPI 222
Query: 384 VAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMG 443
+ WGK+ RVVLDVGCGVASFGG L D+ V+TMSFAPKDEHEAQ+QFALERGIPA AV+G
Sbjct: 223 LDWGKKVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIG 282
Query: 444 TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503
T++LPFP +D +HCARCRV WH GG+ LLELNRVLRPGGFF+WSATPVYQ
Sbjct: 283 TQKLPFPDNAYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVYQHDEGHRN 342
Query: 504 IWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSD-DPN 562
+W M L +MCW++V+ ++ T KVG +Y+KP S+ CYE R + PP+C+ + N
Sbjct: 343 VWKTMESLTTSMCWKVVARTRFT--KVGFVIYQKPDSDSCYESRKNKDPPLCIEEETKKN 400
Query: 563 AAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADY 622
++W+ PL C+ K+P + +WP WP RL +TP L Q + E F D
Sbjct: 401 SSWYTPLLTCLPKLPVSPI---GKWPSGWPERLTETPVSLFREQ------RSEESFREDS 451
Query: 623 EHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPI 682
+ W V+S YL + INW+ + NVMDM + YGGFAAA+ + +WVMNVI ++ DTL
Sbjct: 452 KLWSGVMSNIYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLST 511
Query: 683 IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLI 742
I++RGL GIYHDWCESF+TYPR+YDLLH+ LF+ + +RC+L+ VV E+DRILRP G L
Sbjct: 512 IFDRGLIGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLA 571
Query: 743 VRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRP 785
V+D VE + +L ++ ++W + K GL KS WRP
Sbjct: 572 VQDTVEMLKKLNPILLSLRWSTNLYRGKFLVGL----KSSWRP 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 304/768 (39%), Positives = 446/768 (58%), Gaps = 74/768 (9%)
Query: 22 VTITVFVALCLVGVWMMTSSSSSSV-VPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFE 80
+T V + LC V W SSS+S+ V ++ D+ A+ S K ++E S + +
Sbjct: 27 MTFIVVLGLCFVFFWSFLSSSASTFNVQRESFDDIAEPVSSRTKS----AHEVSESSKLH 82
Query: 81 DNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDS 140
+ E +K + +K+ + E ++ +++ + K D
Sbjct: 83 ERGK--VESGSKSKEGKKVGGSSVHKHETKKKKEHAVSHPHKKKDVPKPVVEEVVVKEDQ 140
Query: 141 EGGETNTDESEKKSYSD-ENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKE 199
E E +D+S++ + D E G +SD ++GE + DG V++
Sbjct: 141 EHEEAESDDSDQSNKEDGEEGTESDGNEGESDGNG----------DGSVDD--------- 181
Query: 200 SEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQ 259
S S D++ E+ ++ + NE+ SK K +
Sbjct: 182 SSASVDEEVEEKNEEVTVNEI--------------------------SKKRKRKGPVFDP 215
Query: 260 QNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLP-EGYK 318
+ Y+W+LCN + +++PC+DN I +L+S Y HRER CP++P CLVPLP +GY
Sbjct: 216 KAEYSWRLCNTRSKHNYMPCIDNDGLIGRLQS---YRHRERSCPKKPVMCLVPLPHDGYD 272
Query: 319 RSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQ 378
+ WP S+ KI Y NV H KLA NWV TGEYL+FP T F L Y++FIQ
Sbjct: 273 PPVSWPESKSKILYKNVAHPKLAAYIKKHNWVNETGEYLSFPQNQTTFNGNVLQYLEFIQ 332
Query: 379 ESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI 438
E VPD+ WGK R+VLD+GC +SF L D+ VLT+S KD+ Q ALERG P
Sbjct: 333 EMVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVALERGFPTF 392
Query: 439 SAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKL 498
+ + + RLPFP VFD +HCA C V WH GGKLLLE+NR+LRP G+FI S+ K+
Sbjct: 393 VSSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLLLEMNRILRPNGYFILSSN--NDKI 450
Query: 499 PEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGS 558
+D AM+ L ++CW +++ + +++G+ +Y+KP SN+ YE R ++ PP+C +
Sbjct: 451 EDD----EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPPLCEDN 506
Query: 559 DDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDF 618
++P+AAW+VP++ C++++P + G++WPE+WP RLE P WL S E
Sbjct: 507 ENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK----------EKA 556
Query: 619 TADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPD 678
D HW +V+KSYL G+GI+W +RNVMDM ++YGGF A++ +VWVMNV+ + SPD
Sbjct: 557 MEDTNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPD 616
Query: 679 TLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVA-VVAEVDRILRP 737
TLP IYERGL GIYHDWCE F TYPR+YDLLHADHLFS++K RC A +V E+DR+ RP
Sbjct: 617 TLPFIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRP 676
Query: 738 EGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRP 785
G ++VRD VE + LE +++ + WE+RMTY++DKEG+LC +K++WRP
Sbjct: 677 GGWVVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/529 (46%), Positives = 349/529 (65%), Gaps = 23/529 (4%)
Query: 246 ESKNEKEAQQSSNQQNGYNWKLC--NVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCP 303
ES ++ + + ++ + + +++C N+T ++IPCLDN++AIK+L ST E ER+CP
Sbjct: 130 ESSDDDDIKSTTARVSVRKFEICSENMT---EYIPCLDNVEAIKRLNSTARGERFERNCP 186
Query: 304 EEPP--TCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPG 361
+ C VP+P+GY+ I WP SR+++W+ NVPHTKL + KG QNW+ + FPG
Sbjct: 187 NDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPG 246
Query: 362 GGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKD 421
GGTQF +GA Y+D I + +PD+++G TRVVLD+GCGVASFG +L R VLTMS APKD
Sbjct: 247 GGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKD 306
Query: 422 EHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVL 481
HE Q+QFALERG+PA+ A T RL +P FD VHC+RCR+ W + G LLLE+NR+L
Sbjct: 307 VHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRML 366
Query: 482 RPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG-IAVYRKPTS 540
R GG+F+W+A PVY+ E W M L +CW LV K G IA+++KP +
Sbjct: 367 RAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVK-------KEGYIAIWQKPVN 419
Query: 541 NECYEKR-SQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTP 599
N CY R + PP+C DDP+ W+V L+AC+ ++ EE+ + P WPARL P
Sbjct: 420 NTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRI-EENGYGANLAP--WPARLLTPP 476
Query: 600 YWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAA 659
L + Q+ Y + E F A+ ++WK ++S +Y+N + +RNV+DMR+ +GGFAA
Sbjct: 477 DRLQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 660 AMKDISV--WVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717
A+ ++ V WV+NVI + P+TLP+IY+RGL G+ HDWCE F TYPRTYDLLHA LFS
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSI 594
Query: 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766
+KRCN+ ++ E+DRILRP G++ +RD + +EL+ + M+W +
Sbjct: 595 ERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/526 (46%), Positives = 335/526 (63%), Gaps = 19/526 (3%)
Query: 241 STQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRER 300
S S EKE+ + Q KLC+ T D+IPCLDN + IK+L +T E+ ER
Sbjct: 121 SATGNSSVEEKESPEVGFQIE--KLKLCDKTK-IDYIPCLDNEEEIKRLNNTDRGENYER 177
Query: 301 HCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFP 360
HCP++ CL+P P+GYK+ I+WP SR+KIW+ NVPHT+L + KG QNW++ + FP
Sbjct: 178 HCPKQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFP 237
Query: 361 GGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK 420
GGGTQF +GA Y+D I + +PD+ +G RTRV LD+GCGVASFG FL R T+S APK
Sbjct: 238 GGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPK 297
Query: 421 DEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRV 480
D HE Q+QFALERG+PA+ AV T RL +P F+ +HC+RCR+ W + G LLLE+NR+
Sbjct: 298 DVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRM 357
Query: 481 LRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG-IAVYRKPT 539
LR GG+F+W+A PVY+ E W M L +CWEL I K G IAV+RKP
Sbjct: 358 LRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWEL-------IKKEGYIAVWRKPL 410
Query: 540 SNECYEKR-SQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKT 598
+N CY R + +PP+C DDP+ W+V ++ C+ ++P+ WPARL
Sbjct: 411 NNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGANV---STWPARLHDP 467
Query: 599 PYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFA 658
P L S Q+ Y S E A+ W VV +SY+ +RNV+DMR+ +GGFA
Sbjct: 468 PERLQSIQMDAY-ISRKEIMKAESRFWLEVV-ESYVRVFRWKEFKLRNVLDMRAGFGGFA 525
Query: 659 AAMKDISV--WVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFS 716
AA+ D+ + WVMN++ + +TLP+IY+RGL G HDWCE F TYPRTYDL+HA LFS
Sbjct: 526 AALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS 585
Query: 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762
KKRCN+ ++ E+DR+LRP G + +RD + +++L+ + K + W
Sbjct: 586 VEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/498 (46%), Positives = 326/498 (65%), Gaps = 18/498 (3%)
Query: 275 DFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPP--TCLVPLPEGYKRSIEWPTSREKIWY 332
++IPCLDN IKKL+ST+ E ERHCPE+ CLVP P+GY++ I WP SR+++W+
Sbjct: 186 EYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWF 245
Query: 333 YNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRV 392
NVPHT+L + KG QNW+ FPGGGTQF +GA Y+D + + V D+ +GK RV
Sbjct: 246 SNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITFGKHIRV 305
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452
+DVGCGVASFG +L R V+TMS APKD HE Q+QFALERG+PA++A T RL +P
Sbjct: 306 AMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQ 365
Query: 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLI 512
FD +HC+RCR+ W + G LLLE+NR+LR GG+F W+A PVY+ P E W M L
Sbjct: 366 AFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLT 425
Query: 513 KAMCWELVSISKDTINKVG-IAVYRKPTSNECYEKR-SQQQPPVCLGSDDPNAAWHVPLQ 570
++CW+LV K G +A+++KP +N+CY R + +PP+C SDDP+ W+ L+
Sbjct: 426 ISLCWKLV-------KKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLK 478
Query: 571 ACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVS 630
C+ ++PE+ G P WPARL P L + + Y + E F A+ ++W ++
Sbjct: 479 PCISRIPEKGY--GGNVP-LWPARLHTPPDRLQTIKFDSY-IARKELFKAESKYWNEIIG 534
Query: 631 KSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSPDTLPIIYERGL 688
Y+ + +RNV+DMR+ +GGFAAA+ D + WV++V+ + P+TLP+IY+RGL
Sbjct: 535 -GYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 689 FGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE 748
G+ HDWCE F TYPRTYD LHA LFS +KRC + ++ E+DRILRP G+ +RD ++
Sbjct: 594 LGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSID 653
Query: 749 TINELESMVKGMQWEVRM 766
++E++ + K M W +
Sbjct: 654 VMDEIQEITKAMGWHTSL 671
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 796 | ||||||
| 255550522 | 814 | ATP binding protein, putative [Ricinus c | 0.988 | 0.966 | 0.736 | 0.0 | |
| 224093466 | 824 | predicted protein [Populus trichocarpa] | 0.987 | 0.953 | 0.731 | 0.0 | |
| 224080998 | 796 | predicted protein [Populus trichocarpa] | 0.981 | 0.981 | 0.750 | 0.0 | |
| 356508961 | 810 | PREDICTED: probable methyltransferase PM | 0.986 | 0.969 | 0.721 | 0.0 | |
| 225431685 | 825 | PREDICTED: probable methyltransferase PM | 0.986 | 0.951 | 0.702 | 0.0 | |
| 356516372 | 806 | PREDICTED: probable methyltransferase PM | 0.987 | 0.975 | 0.720 | 0.0 | |
| 356512852 | 831 | PREDICTED: probable methyltransferase PM | 0.991 | 0.949 | 0.711 | 0.0 | |
| 357519999 | 826 | Ankyrin-like protein [Medicago truncatul | 0.992 | 0.956 | 0.711 | 0.0 | |
| 357464711 | 789 | Ankyrin-like protein [Medicago truncatul | 0.974 | 0.983 | 0.739 | 0.0 | |
| 356526844 | 827 | PREDICTED: probable methyltransferase PM | 0.992 | 0.955 | 0.707 | 0.0 |
| >gi|255550522|ref|XP_002516311.1| ATP binding protein, putative [Ricinus communis] gi|223544541|gb|EEF46058.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/823 (73%), Positives = 698/823 (84%), Gaps = 36/823 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKYTR+D RR +++YCSTVTI VFVALCLVGVWMMTSSS VVP Q+VD PAQ+ K
Sbjct: 1 MALGKYTRIDTRRQSTNYCSTVTIVVFVALCLVGVWMMTSSS---VVPGQSVDVPAQDTK 57
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKN-EKIQEN-----IEKSDEKSNEES 114
SE KE+ SNESS +QFED+ DLPEDATKG N K QE+ ++ +EK +E +
Sbjct: 58 SEVKEEAPPSNESSG-KQFEDSPGDLPEDATKGDSNTNKSQEDSNSNTLQNQEEKQDEVN 116
Query: 115 KFDDGSN--RQTQNDDNKTGDRDSKT-----DSEGGETNTDESEKKSY----SDEN--GN 161
K DD SN +TQ D+ T D DSKT +SE G +++ SE + S+EN N
Sbjct: 117 KSDDVSNPKTETQKDETNTEDADSKTSDGETNSEAGGKDSNGSESSAAGQGDSEENTQDN 176
Query: 162 KS---DSDDGEKKSDR-----KSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSK 213
KS +S + EKKS+ KS+++S E DG+ +EK D N+N +SEK++D + +
Sbjct: 177 KSEPENSGETEKKSNTDNTETKSDDNSSETKDGK-DEKVDINDNNDSEKTTDGQ----AN 231
Query: 214 NQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAG 273
NQ+++E+FPSGAQ EL NET TQ GS+STQA ESKNEK+AQ +S+QQ YNWK+CNVTAG
Sbjct: 232 NQNASEIFPSGAQSELLNETATQNGSWSTQAAESKNEKDAQLASDQQKTYNWKVCNVTAG 291
Query: 274 ADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYY 333
D+IPCLDNLQAI+ L STKHYEHRERHCPEEPPTCLVPLPEGYKR IEWP SREKIWYY
Sbjct: 292 PDYIPCLDNLQAIRNLHSTKHYEHRERHCPEEPPTCLVPLPEGYKRPIEWPKSREKIWYY 351
Query: 334 NVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVV 393
NVPHTKLA++KGHQNWVKVTGEYLTFPGGGTQFK+GALHYIDFI ESVPD+AWGKR+RV+
Sbjct: 352 NVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFINESVPDIAWGKRSRVI 411
Query: 394 LDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIV 453
LDVGCGVASFGG+LFDR VL MSFAPKDEHEAQVQFALERGIP ISAVMGT+RLPFP V
Sbjct: 412 LDVGCGVASFGGYLFDRDVLAMSFAPKDEHEAQVQFALERGIPGISAVMGTQRLPFPARV 471
Query: 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIK 513
FD VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATPVYQK+PEDVEIW AM++L K
Sbjct: 472 FDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKIPEDVEIWKAMTELTK 531
Query: 514 AMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACM 573
A+CWELVS++KDT+N VGIA+YRKPTSN+CYEKRSQQ+PP+C SDDPNAAW+VPLQACM
Sbjct: 532 AICWELVSVNKDTVNGVGIAMYRKPTSNDCYEKRSQQEPPICEASDDPNAAWNVPLQACM 591
Query: 574 HKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSY 633
HKVP +S ERGSQWPE+WPARL++ PYW++SS+VGVYGK PEDF ADYEHWKRVVSKSY
Sbjct: 592 HKVPVDSAERGSQWPEEWPARLQQAPYWMMSSKVGVYGKPEPEDFAADYEHWKRVVSKSY 651
Query: 634 LNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYH 693
LNG+GI WS+VRNVMDMRS+YGGFAAA+KDI+VWVMNV+ +DSPDTLPIIYERGLFGIYH
Sbjct: 652 LNGIGIKWSSVRNVMDMRSIYGGFAAALKDINVWVMNVVPVDSPDTLPIIYERGLFGIYH 711
Query: 694 DWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINEL 753
DWCESF+TYPRTYDLLHADHLFSKIKKRCNLVAV+ EVDRILRPEGKLIVRD+VET+ EL
Sbjct: 712 DWCESFNTYPRTYDLLHADHLFSKIKKRCNLVAVIVEVDRILRPEGKLIVRDNVETVTEL 771
Query: 754 ESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
E++++ M WEVRMTYSK+KEGLL VEKSMWRPKE ETI YAIA
Sbjct: 772 ENILRSMHWEVRMTYSKEKEGLLYVEKSMWRPKESETITYAIA 814
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093466|ref|XP_002309924.1| predicted protein [Populus trichocarpa] gi|222852827|gb|EEE90374.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1248 bits (3229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/834 (73%), Positives = 690/834 (82%), Gaps = 48/834 (5%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY+RVD RR SSYCSTVTITVFV LCLVGVWMMTSSS VVP Q+VD PAQE K
Sbjct: 1 MALGKYSRVDNRRQNSSYCSTVTITVFVGLCLVGVWMMTSSS---VVPGQSVDAPAQENK 57
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKG------------------------GKN 96
+E K+Q+ ESNE + Q ED+ DLPEDAT+G +
Sbjct: 58 NEVKQQVPESNEINPKQP-EDSPGDLPEDATQGDSKKPDEKPEEKPEEKPEEKPEDKQEE 116
Query: 97 EKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTD-------- 148
+ ++ EK +EKSNE++K DDGS +TQN D D+K ++ GETNT
Sbjct: 117 QPEEKPEEKPEEKSNEDTKSDDGSTTETQNGGTNAEDGDTKINN--GETNTKDGGTKPDD 174
Query: 149 -ESEKKSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQ-----VEEKEDQNENKESEK 202
ES D N ++ G +++ K E++GE DG+ ++EK DQ ++KE++K
Sbjct: 175 GESNAAGQGDSEENSTEKKPGTDETETKLVENTGEGEDGETGNDKIDEKVDQKDSKEADK 234
Query: 203 SSDDKKEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNG 262
SSD + + NQSS EL PSGAQ EL NETTTQ GS+STQA ESKNEKE Q+SSNQQ G
Sbjct: 235 SSDGQ----ANNQSSGELLPSGAQSELLNETTTQSGSWSTQAAESKNEKETQKSSNQQGG 290
Query: 263 YNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIE 322
YNWKLCNVTAG D+IPCLDN Q I+ L STKHYEHRERHCPEEPPTCLVPLPEGYKR IE
Sbjct: 291 YNWKLCNVTAGPDYIPCLDNWQKIRSLHSTKHYEHRERHCPEEPPTCLVPLPEGYKRPIE 350
Query: 323 WPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVP 382
W TSREKIWY+NVPHTKLA+IKGHQNWVKVTGE+LTFPGGGTQFK+GALHYIDFI ESVP
Sbjct: 351 WSTSREKIWYHNVPHTKLAQIKGHQNWVKVTGEFLTFPGGGTQFKHGALHYIDFINESVP 410
Query: 383 DVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVM 442
D+AWGK+TRV+LDVGCGVASFGG+LFDR VLTMSFAPKDEHEAQVQFALERGIPAISAVM
Sbjct: 411 DIAWGKQTRVILDVGCGVASFGGYLFDRDVLTMSFAPKDEHEAQVQFALERGIPAISAVM 470
Query: 443 GTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDV 502
GT+RLP+PG VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGG F+WSATPVYQKL EDV
Sbjct: 471 GTKRLPYPGRVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGLFVWSATPVYQKLAEDV 530
Query: 503 EIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPN 562
EIW AM++L KAMCWELVSI+KDTIN VG+A YRKPTSN+CYEKRS+Q+PP+C SDDPN
Sbjct: 531 EIWQAMTELTKAMCWELVSINKDTINGVGVATYRKPTSNDCYEKRSKQEPPLCEASDDPN 590
Query: 563 AAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADY 622
AAW+VPLQACMHKVP +SLERGSQWPEQWPARL KTPYW+LSSQVGVYGK APEDFTADY
Sbjct: 591 AAWNVPLQACMHKVPVDSLERGSQWPEQWPARLGKTPYWMLSSQVGVYGKPAPEDFTADY 650
Query: 623 EHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPI 682
EHWKRVVS SYLNG+GINWS+VRN MDMRSVYGGFAAA+K+++VWVMNVI++DSPDTLPI
Sbjct: 651 EHWKRVVSNSYLNGIGINWSSVRNAMDMRSVYGGFAAALKELNVWVMNVITVDSPDTLPI 710
Query: 683 IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLI 742
IYERGLFGIYHDWCESFSTYPR+YDLLHADHLFSK+KKRC++VAV AEVDRILRPEGKLI
Sbjct: 711 IYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKVKKRCSMVAVFAEVDRILRPEGKLI 770
Query: 743 VRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
VRD+VET+NELE+M + MQWEVRMTYSKDKEGLLCV+KS WRP+E ET+ YAIA
Sbjct: 771 VRDNVETMNELENMARSMQWEVRMTYSKDKEGLLCVQKSKWRPRESETLTYAIA 824
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080998|ref|XP_002306259.1| predicted protein [Populus trichocarpa] gi|222855708|gb|EEE93255.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/811 (75%), Positives = 691/811 (85%), Gaps = 30/811 (3%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY+RVD RR SSY STVTI VFV LCLVG WMMTSSS VVP QNVD PAQE K
Sbjct: 1 MALGKYSRVDNRRHNSSYYSTVTIVVFVGLCLVGAWMMTSSS---VVPGQNVDVPAQENK 57
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGS 120
+E K+Q+TESNE ++ +QFEDN + + + ++ +EK+DEKSNEE+K DDGS
Sbjct: 58 NEVKQQVTESNEINT-KQFEDNPEK----PEEKPEEKPEEKPVEKTDEKSNEETKSDDGS 112
Query: 121 NRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKS-------- 172
+ +TQN N T D D+KT+ GETNT++ K+ D GN + D E+ S
Sbjct: 113 DTETQNGVNNTEDVDAKTND--GETNTEDGGTKA-DDSEGNAAGQGDSEENSTEKKPDTD 169
Query: 173 --DRKSEESSGEKVD-----GQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGA 225
+ KS+E++GE D Q++EK DQ ++K+S+KSSD + + NQSS EL PSGA
Sbjct: 170 ETETKSDENAGEDKDRETGNDQLDEKVDQKDDKDSDKSSDGQ----ANNQSSGELLPSGA 225
Query: 226 QLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQA 285
Q EL+NET+TQ GS+STQA ESKNEKE QQSSNQQ GYNWKLCNVTAG DFIPCLDNLQA
Sbjct: 226 QSELSNETSTQSGSWSTQAAESKNEKETQQSSNQQKGYNWKLCNVTAGPDFIPCLDNLQA 285
Query: 286 IKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKG 345
I+ L+STKHYEHRERHCPEEPPTCLV LPEGYKR IEWPTSREKIWY+NVPHT+LA+ KG
Sbjct: 286 IRSLQSTKHYEHRERHCPEEPPTCLVLLPEGYKRPIEWPTSREKIWYHNVPHTQLAQYKG 345
Query: 346 HQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGG 405
HQNWVKVTGE+LTFPGGGTQF++GALHYIDF+ ESVP +AWGKRTRV+LDVGCGVASFGG
Sbjct: 346 HQNWVKVTGEFLTFPGGGTQFQHGALHYIDFLNESVPGIAWGKRTRVILDVGCGVASFGG 405
Query: 406 FLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465
+LFDR VL MSFAPKDEHEAQ+QFALERGIPAISAVMGT+RLP+PG VFDAVHCARCRVP
Sbjct: 406 YLFDRDVLAMSFAPKDEHEAQIQFALERGIPAISAVMGTKRLPYPGRVFDAVHCARCRVP 465
Query: 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525
WHIEGGKLLLELNRVLRPGGFF+WSATPVYQKL EDVEIW AM++L KAMCWELVSI+KD
Sbjct: 466 WHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLAEDVEIWQAMTELTKAMCWELVSINKD 525
Query: 526 TINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGS 585
T+N VG+A YRKPTSN+CYEKRS+Q+PP+C SDDPNAAW+VPLQACMHKVP SLERGS
Sbjct: 526 TLNGVGVATYRKPTSNDCYEKRSKQEPPLCEASDDPNAAWNVPLQACMHKVPVGSLERGS 585
Query: 586 QWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVR 645
QWPEQWPARL+KTPYW+LSSQVGVYGK APEDFTADYEHWKRVVS SYLNG+G+NWS+VR
Sbjct: 586 QWPEQWPARLDKTPYWMLSSQVGVYGKPAPEDFTADYEHWKRVVSNSYLNGIGLNWSSVR 645
Query: 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRT 705
N MDMRSVYGGFAAA+K+++VWVMNV++ DSPDTLPIIYERGLFGIYHDWCESF+TYPR+
Sbjct: 646 NAMDMRSVYGGFAAALKELNVWVMNVVTADSPDTLPIIYERGLFGIYHDWCESFNTYPRS 705
Query: 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR 765
YDLLHADHLFSK+KKRCNL AV AEVDRILRPEGKLIVRD VE INELE+M + MQWEVR
Sbjct: 706 YDLLHADHLFSKVKKRCNLAAVFAEVDRILRPEGKLIVRDKVEIINELENMARSMQWEVR 765
Query: 766 MTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
MTYSKDKEGLLCV+KSMWRPKE ETI YAIA
Sbjct: 766 MTYSKDKEGLLCVQKSMWRPKESETINYAIA 796
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508961|ref|XP_003523221.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1222 bits (3162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/821 (72%), Positives = 681/821 (82%), Gaps = 36/821 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY RVDGRRS SS+CSTVT+ +FVALCLVGVWMMTSSS VVPV+N DE AQE K
Sbjct: 1 MALGKYARVDGRRS-SSWCSTVTVVMFVALCLVGVWMMTSSS---VVPVRNGDE-AQENK 55
Query: 61 SEAKEQL----TESNESSSN-QQFEDNNADLPEDATKGGKNEKIQENIEKSD-------- 107
++ KEQ S S+SN +QFEDN DLPEDATKG N ++N SD
Sbjct: 56 NQVKEQAEVKEAVSEVSNSNTRQFEDNPGDLPEDATKGDSNVTFEDNSNSSDKQEKLEEN 115
Query: 108 --EKSNEESKFDD---------GSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYS 156
E+S++++K +D GSN + +++ + + ++ E+++DESEKK S
Sbjct: 116 PVERSSDDTKTEDVDDKKTEEEGSNTENESNSDSVENNKDSDETSTKESDSDESEKKPDS 175
Query: 157 DENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKK-EDGSKNQ 215
D+N KSDSD+ EK+SD S E + ++EEK ++++NKES+++ +K D +K +
Sbjct: 176 DDN-KKSDSDESEKQSD-----DSDETTNTRIEEKVEESDNKESDENFIEKNTNDDTKQK 229
Query: 216 SSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGAD 275
+S E++PSGAQ EL E+TT+ GS+STQA ESKNEKE+Q+SS Q GY WKLCNVTAG D
Sbjct: 230 TSKEVYPSGAQSELHEESTTETGSWSTQAAESKNEKESQESSKQATGYKWKLCNVTAGPD 289
Query: 276 FIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNV 335
FIPCLDN +AI+ LRSTKHYEHRERHCPEEPPTCLVP+PEGYKR IEWP SREKIWYYNV
Sbjct: 290 FIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNV 349
Query: 336 PHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLD 395
PHTKLAK+KGHQNWVKVTGEYLTFPGGGTQFK+GALHYIDFIQE+ PD+AWGKRTRV+LD
Sbjct: 350 PHTKLAKVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETEPDIAWGKRTRVILD 409
Query: 396 VGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFD 455
VGCGVASFGGFLFDR VL MS APKDEHEAQVQFALERGIPAISAVMGT+RLPFPG VFD
Sbjct: 410 VGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFD 469
Query: 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM 515
VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATP+YQKLPEDVEIW AM L KAM
Sbjct: 470 VVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKTLTKAM 529
Query: 516 CWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHK 575
CWE+VSISKD +N VG+AVY+KPTSNECYE+RS+ +PP+C SDDPNAAW++ LQACMHK
Sbjct: 530 CWEVVSISKDQVNGVGVAVYKKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIKLQACMHK 589
Query: 576 VPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLN 635
VP S ERGS+ PE WPARL K PYWLLSSQVGVYGK APEDFTADYEHWKRVVS+SYL+
Sbjct: 590 VPASSKERGSKLPELWPARLTKVPYWLLSSQVGVYGKPAPEDFTADYEHWKRVVSQSYLD 649
Query: 636 GMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDW 695
GMGI WS VRNVMDMRS+YGGFAAA++D++VWVMNV++IDSPDTLPII+ERGLFGIYHDW
Sbjct: 650 GMGIKWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIFERGLFGIYHDW 709
Query: 696 CESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELES 755
CESFSTYPRTYDLLHADHLFSK+KKRCNL AVVAE DRILRPEGKLIVRD VE + ELES
Sbjct: 710 CESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIVEELES 769
Query: 756 MVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
M + MQW+VRMTYSKDKEGLLCVEKS WRPKE E ++YAI
Sbjct: 770 MARSMQWKVRMTYSKDKEGLLCVEKSKWRPKEQEKLEYAIV 810
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431685|ref|XP_002266357.1| PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/836 (70%), Positives = 694/836 (83%), Gaps = 51/836 (6%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY+RVDGRRS ++YCST T+ FVALCLVGVWMMTSSS VVPVQN D QE K
Sbjct: 1 MALGKYSRVDGRRSTTNYCSTATLVAFVALCLVGVWMMTSSS---VVPVQNSDVSTQETK 57
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGG--------KNEKIQENI---EKSDEK 109
E K+Q+ ESN+S + +QFED++ DL +DA KG KN Q+N EK E
Sbjct: 58 DEVKQQVVESNDSDT-RQFEDSSGDLTDDAKKGDGVSFTQDEKNPNPQDNPAVPEKPSEN 116
Query: 110 --------------SNEESKFDDGSNRQTQNDDNKTGDR--DSKT---DSEGGETNTDES 150
+ EE+K +DGS + +N +NK+GD DSKT +S+ GET TD
Sbjct: 117 GLEEKQEKPEEKLINEEENKPEDGSTNEAENGENKSGDGEGDSKTEDANSDSGETKTDGG 176
Query: 151 EKKSYSDENGN--------KSDSDDGEKKSDRKSEES-SGEKVDGQVEEKEDQNENKESE 201
E S +D G+ KS+ DD EKKS+ S E+ G+KVDGQ+EEK +QNENK+SE
Sbjct: 177 E--SIADGQGDSEGGSVEKKSELDDSEKKSEENSFETKDGDKVDGQIEEKVEQNENKDSE 234
Query: 202 KSSDDKKEDG-SKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQ 260
++S ++KED +K Q SNE+FPSGA EL NETTTQ G+F TQA ESK EKE+QQ+
Sbjct: 235 QNSGERKEDSEAKEQVSNEVFPSGAMSELLNETTTQNGAFLTQAAESKKEKESQQTV--- 291
Query: 261 NGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRS 320
Y+WK+CNVTAG D+IPCLDNLQAIK L STKHYEHRERHCP EPPTCLV LPEGYKR
Sbjct: 292 --YSWKVCNVTAGPDYIPCLDNLQAIKSLPSTKHYEHRERHCPNEPPTCLVSLPEGYKRP 349
Query: 321 IEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQES 380
IEWPTSR+KIWYYNVPHTKLA+IKGHQNWVKV+GE+LTFPGGGTQFKNGALHYI+FI+ES
Sbjct: 350 IEWPTSRDKIWYYNVPHTKLAEIKGHQNWVKVSGEFLTFPGGGTQFKNGALHYIEFIEES 409
Query: 381 VPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISA 440
+PD+AWGKR+RVVLDVGCGVASFGG+LFD+ VLTMSFAPKDEHEAQVQFALERGIP ISA
Sbjct: 410 MPDIAWGKRSRVVLDVGCGVASFGGYLFDKDVLTMSFAPKDEHEAQVQFALERGIPGISA 469
Query: 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500
VMGT+RLPFP +VFD VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATPVYQKL +
Sbjct: 470 VMGTKRLPFPAMVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLAD 529
Query: 501 DVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDD 560
DV IWNAM++L+K+MCWELV I +D +N+V A+Y+KPTSN+CYEKRSQ +PP+C S+D
Sbjct: 530 DVAIWNAMTELMKSMCWELVVIKRDVVNRVAAAIYKKPTSNDCYEKRSQNEPPICADSED 589
Query: 561 PNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTA 620
NAAW+VPLQACMHKVP ++ +RGSQWPE WPARL+K+PYWL SSQVGVYG++APEDFTA
Sbjct: 590 ANAAWNVPLQACMHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTA 649
Query: 621 DYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTL 680
DYEHWKRVV++SYLNG+GI+WS+VRNVMDMR+VYGGFAAA++D++VWVMNV+SIDSPDTL
Sbjct: 650 DYEHWKRVVAQSYLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTL 709
Query: 681 PIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGK 740
PIIYERGLFGIYH+WCESF+TYPR+YDLLHADH+FSK KK+CNLVAV+AE DRILRPEGK
Sbjct: 710 PIIYERGLFGIYHNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGK 769
Query: 741 LIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
LIVRDDVET+ ++E+M++ M WE+RMTYSK+KEGLLC +K+MWRPKE+E IK AIA
Sbjct: 770 LIVRDDVETLGQVENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAIA 825
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516372|ref|XP_003526869.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/816 (72%), Positives = 680/816 (83%), Gaps = 30/816 (3%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY RVDGRRS SS+CSTVT+ VFVALCLVGVWMMTSSS VVPV+N DE AQE K
Sbjct: 1 MALGKYARVDGRRS-SSWCSTVTVVVFVALCLVGVWMMTSSS---VVPVRNGDE-AQENK 55
Query: 61 SEAKEQL--TESNES------SSNQQFEDNNADLPEDATKGGKNEKIQENIEKSD----- 107
++ KEQ TE E+ S+ +QFEDN DLPEDATKG N ++N SD
Sbjct: 56 NQVKEQTEPTEVKEAVSEVSNSNMRQFEDNPGDLPEDATKGDSNVASEDNSNLSDKQEEK 115
Query: 108 ------EKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGN 161
E+S++++K +D +++T+ + + T + + +E + + + S K+S SDEN
Sbjct: 116 SEENPVERSSDDTKSEDVEDKKTEEEGSNTENESNSDSTENSKDSDETSTKESDSDENEK 175
Query: 162 KSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKK-EDGSKNQSSNEL 220
KSDSD+ EK+S+ + E D ++EEK ++++NKES+++S +K D +K +SS E+
Sbjct: 176 KSDSDESEKQSN-----DTDETTDTKIEEKVEESDNKESDENSSEKNINDDTKQKSSKEV 230
Query: 221 FPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCL 280
+PSGAQ EL E+T + GS+STQA +SKNEK++Q+SS Q GY WKLCNVTAG DFIPCL
Sbjct: 231 YPSGAQSELQEESTAETGSWSTQAAQSKNEKDSQESSKQPTGYKWKLCNVTAGPDFIPCL 290
Query: 281 DNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKL 340
DN +AI+ L+STKHYEHRERHCPEEPPTCLVP+PEGYKR IEWP SREKIWYYNVPHTKL
Sbjct: 291 DNWKAIRSLQSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNVPHTKL 350
Query: 341 AKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGV 400
A++KGHQNWVKVTGEYLTFPGGGTQFK+GALHYIDFIQE+VPD+AWGKRTRV+LDVGCGV
Sbjct: 351 AEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGV 410
Query: 401 ASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCA 460
ASFGGFLFDR VL MS APKDEHEAQVQFALERGIPAISAVMGT+RLPFPG VFD VHCA
Sbjct: 411 ASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCA 470
Query: 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520
RCRVPWHIEGGKLLLELNRVLRPGGFF+WSATP+YQKLPEDVEIW AM L KAMCWE+V
Sbjct: 471 RCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKALTKAMCWEVV 530
Query: 521 SISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEES 580
SISKD +N VG+AVYRKPTSNECYE+RS+ +PP+C SDDPNAAW++ LQAC+HK P S
Sbjct: 531 SISKDPVNGVGVAVYRKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACLHKAPVSS 590
Query: 581 LERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGIN 640
ERGS+ PE WPARL K PYWL SSQVGVYGK AP+DFTADYEHWKRVVSKSYL+GMGI
Sbjct: 591 KERGSKLPELWPARLIKVPYWLSSSQVGVYGKPAPQDFTADYEHWKRVVSKSYLDGMGIK 650
Query: 641 WSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFS 700
WS VRNVMDMRS+YGGFAAA++D++VWVMNV++IDSPDTLPIIYERGLFGIYHDWCESFS
Sbjct: 651 WSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIYERGLFGIYHDWCESFS 710
Query: 701 TYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGM 760
TYPRTYDLLHADHLFSK+KKRCNL AVVAE DRILRPEGKLIVRD VE I ELESM + M
Sbjct: 711 TYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIIEELESMARSM 770
Query: 761 QWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
QW+VRMTYSKDKEGLLCVEKS WRPKE E ++YAIA
Sbjct: 771 QWKVRMTYSKDKEGLLCVEKSKWRPKEQEKLEYAIA 806
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512852|ref|XP_003525129.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/838 (71%), Positives = 672/838 (80%), Gaps = 49/838 (5%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA KYTR+D + SSYCSTVTI VFVALCL G+WMMTSSS V PVQNVD +QE
Sbjct: 1 MAQAKYTRIDNNKRPSSYCSTVTIVVFVALCLFGIWMMTSSS---VTPVQNVD-VSQENN 56
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGG------KNEKIQENIE-KSDEKSNEE 113
SE KEQ T+ + ++S QQFEDN DL EDATKG KN ++E E KSDEKS E+
Sbjct: 57 SEVKEQATDPSNNNS-QQFEDNRGDLSEDATKGDGSVTPDKNSDVKEKQEEKSDEKSQEK 115
Query: 114 SKFDDGSNRQTQNDDNKTGDRD-----SKTDSEGGETNTDESEKKSYSDENGNKSDSDDG 168
D + Q + K D D S +D ++++DESEKKS S E+ KSDSD+
Sbjct: 116 PSEDTKTENQDTSVSEKRSDSDESQQKSDSDESQQKSDSDESEKKSDSAESEKKSDSDES 175
Query: 169 EKKSDRKSEESSGEKVDGQ-----------------------------VEEKEDQNENKE 199
EKKSD E S E D + EEK +Q+ N+E
Sbjct: 176 EKKSDSDETEKSSESNDNKQFDSDERENKSDSDENEKKSGDASETTDKTEEKVEQSGNQE 235
Query: 200 SEKSSDDKKEDGSKN-QSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSN 258
S+++S++KK D + N Q SNE++PS AQ EL NE+TTQ GSF+TQA ESKNEKE+Q SS
Sbjct: 236 SDENSNEKKTDDNANSQGSNEVYPSVAQSELLNESTTQNGSFTTQAAESKNEKESQVSSK 295
Query: 259 QQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYK 318
Q WKLCNVTAG D+IPCLDNL+AI+ L STKHYEHRER CPEEPPTCLVPLPEGYK
Sbjct: 296 QSTI--WKLCNVTAGPDYIPCLDNLKAIRSLPSTKHYEHRERQCPEEPPTCLVPLPEGYK 353
Query: 319 RSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQ 378
R IEWP SREKIWY NVPHTKLA+ KGHQNWVKVTGEYLTFPGGGTQFK+GALHYID IQ
Sbjct: 354 RPIEWPKSREKIWYSNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDTIQ 413
Query: 379 ESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI 438
+SVPD+AWG R+RV+LDVGCGVASFGGFLF+R VLTMS APKDEHEAQVQFALERGIPAI
Sbjct: 414 QSVPDIAWGNRSRVILDVGCGVASFGGFLFERDVLTMSLAPKDEHEAQVQFALERGIPAI 473
Query: 439 SAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKL 498
SAVMGT+RLP+PG VFD VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATP+YQKL
Sbjct: 474 SAVMGTKRLPYPGRVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKL 533
Query: 499 PEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGS 558
PEDVEIWN M L KAMCWE+VSISKD +N VGIAVY+KPTSNECYEKRSQ QPP+C S
Sbjct: 534 PEDVEIWNEMKALTKAMCWEVVSISKDKLNGVGIAVYKKPTSNECYEKRSQNQPPICPDS 593
Query: 559 DDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDF 618
DDPNAAW++PLQACMHKVP S ERGSQWPE+WPARL TPYWL +SQVGVYGK APEDF
Sbjct: 594 DDPNAAWNIPLQACMHKVPVSSTERGSQWPEKWPARLTNTPYWLTNSQVGVYGKPAPEDF 653
Query: 619 TADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPD 678
TADYEHWKR+VSKSYLNG+GINWS VRNVMDMRSVYGGFAAA+KD+++WVMNV+S++S D
Sbjct: 654 TADYEHWKRIVSKSYLNGIGINWSNVRNVMDMRSVYGGFAAALKDLNIWVMNVVSVNSAD 713
Query: 679 TLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPE 738
TLPIIYERGLFG+YHDWCESFSTYPR+YDLLHAD+LFS IK RCNL AVVAE+DRILRPE
Sbjct: 714 TLPIIYERGLFGMYHDWCESFSTYPRSYDLLHADNLFSNIKNRCNLKAVVAEIDRILRPE 773
Query: 739 GKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
GKLIVRD VE I+E+ESMVK M+WEVRMTYSKDK G LCV+KSMWRPKELET++YAI
Sbjct: 774 GKLIVRDTVEIISEIESMVKSMKWEVRMTYSKDKVGFLCVQKSMWRPKELETLEYAIG 831
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519999|ref|XP_003630288.1| Ankyrin-like protein [Medicago truncatula] gi|355524310|gb|AET04764.1| Ankyrin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/825 (71%), Positives = 671/825 (81%), Gaps = 35/825 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEK- 59
MA +Y+R+D +RS SSYCSTVTI VFVALCLVG+WMMTSS VVPVQNVDE + +
Sbjct: 1 MAQARYSRIDNKRSPSSYCSTVTIVVFVALCLVGLWMMTSS----VVPVQNVDESTKNEV 56
Query: 60 --KSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENI--------EKSDEK 109
+SEAK+Q T+ S+ Q FED DLP+++TK N K EN EKSDEK
Sbjct: 57 KGQSEAKDQATDITNSNP-QNFEDKKGDLPQESTKEDNNAKQSENNHVMPKKQEEKSDEK 115
Query: 110 SNEESK-------FDDGSNRQTQNDD---NKTGDRDSKTDSEGGETN----TDESEKKSY 155
++S D N++T + D NK+ +S S GE N +D SEKKS
Sbjct: 116 PEDKSPEDTKMTYIDPNQNKKTSDSDESNNKSVSDESNNKSGSGEDNKKSDSDVSEKKSN 175
Query: 156 SDENGNKSDSDD---GEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKED-G 211
SDE KS+S+D G S+ K +ESS E D + EEK DQ+ N+ES++SS++KK D
Sbjct: 176 SDEREKKSNSNDNKSGSDASENKKDESS-ETTDNKTEEKADQSGNQESDESSNEKKTDEN 234
Query: 212 SKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVT 271
+KNQ SNEL PSGAQ EL NETTTQ GSFSTQA ESK+E E+Q+SS Q G+NWKLCNVT
Sbjct: 235 TKNQGSNELLPSGAQSELLNETTTQTGSFSTQAAESKSETESQKSSKQSTGFNWKLCNVT 294
Query: 272 AGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIW 331
AG D+IPCLDNLQAI+ L++TKHYEHRER CPE+PPTCLV LPEGYKR IEWP SREKIW
Sbjct: 295 AGPDYIPCLDNLQAIRNLKTTKHYEHRERQCPEDPPTCLVALPEGYKRPIEWPKSREKIW 354
Query: 332 YYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTR 391
Y NVPHTKLA+ KGHQNWVKVTGEYLTFPGGGTQFK+GALHYID IQ+SVPD+AWGK+TR
Sbjct: 355 YSNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDTIQQSVPDIAWGKQTR 414
Query: 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451
V+LDVGCGVASFGGFLF+R VL MSFAPKDEHEAQVQFALERGIPAISAVMGT+RLPFP
Sbjct: 415 VILDVGCGVASFGGFLFERDVLAMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPA 474
Query: 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQL 511
VFDA+HCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATP+YQKLPEDVEIWN M L
Sbjct: 475 RVFDAIHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKAL 534
Query: 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQA 571
KAMCWE+VSIS+D +NKVGIAVY+KPTSNECYEKRS+ +P +C DDPNAAW++PLQ
Sbjct: 535 TKAMCWEVVSISRDKLNKVGIAVYKKPTSNECYEKRSKNEPSICQDYDDPNAAWNIPLQT 594
Query: 572 CMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSK 631
CMHK P S ERGSQWP +WP RL K+PYWL +S+VGVYGK APEDFTAD+EHWKRVVSK
Sbjct: 595 CMHKAPVSSTERGSQWPGEWPERLSKSPYWLSNSEVGVYGKPAPEDFTADHEHWKRVVSK 654
Query: 632 SYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGI 691
SYLNG+GI WS VRNVMDMRSVYGGFAAA+ D+ +WVMNV+ +DSPDTLPIIYERGLFGI
Sbjct: 655 SYLNGIGIQWSNVRNVMDMRSVYGGFAAALMDLKIWVMNVVPVDSPDTLPIIYERGLFGI 714
Query: 692 YHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETIN 751
YHDWCESFSTYPR+YDL+HADHLFSK+KKRC AVVAEVDRILRPEGKLIVRD ETIN
Sbjct: 715 YHDWCESFSTYPRSYDLVHADHLFSKLKKRCKFEAVVAEVDRILRPEGKLIVRDTAETIN 774
Query: 752 ELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
ELES+V MQWEVRMTY+KD +G+L V+KSMWRP ELET++YAI
Sbjct: 775 ELESLVTAMQWEVRMTYTKDLQGILSVQKSMWRPTELETVEYAIG 819
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464711|ref|XP_003602637.1| Ankyrin-like protein [Medicago truncatula] gi|355491685|gb|AES72888.1| Ankyrin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1211 bits (3132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/809 (73%), Positives = 673/809 (83%), Gaps = 33/809 (4%)
Query: 1 MANGKYTRVDGRRSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKK 60
MA GKY+RVDGRRS SSYCSTVTI VFVAL L+GVWMMTSSS VVPVQN D P QE K
Sbjct: 1 MALGKYSRVDGRRS-SSYCSTVTIVVFVALALIGVWMMTSSS---VVPVQNEDVP-QESK 55
Query: 61 SEAKEQL-----TESNESSSNQQFEDNNADLPEDATKG-GKNEKIQENIEKSDEKSNEES 114
SE KEQ ++S+ +QFEDN DLPEDATKG +++ E S EKS+E++
Sbjct: 56 SEVKEQTEVREQVSETDNSNARQFEDNPGDLPEDATKGDSNVSSEEKSEENSTEKSSEDT 115
Query: 115 KFDDGSNRQTQNDDNKTGDRDSKTDS--EGGETNTDESEKKSYSDEN----GNKSDSDDG 168
K T+++ KT D S T++ +G E +T ESE ++ NKSDSD+
Sbjct: 116 K--------TEDEGKKTEDEGSNTENNKDGEEASTKESESDESEKKDESEENNKSDSDES 167
Query: 169 EKKSDRKSEESSGEKVDGQVEEKEDQNENKES-EKSSDDKKEDGSKNQSSNELFPSGAQL 227
EKKS S E D VEEK +Q++NKES E +S+ +D +K+QSSNE+FPSGAQ
Sbjct: 168 EKKSS-----DSNETTDSNVEEKVEQSQNKESDENASEKNTDDNAKDQSSNEVFPSGAQS 222
Query: 228 ELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIK 287
EL NETTTQ GSFSTQA ESKNEKE Q+SS + GYNWK+CNVTAG DFIPCLDN + I+
Sbjct: 223 ELLNETTTQTGSFSTQAAESKNEKEIQESS--KTGYNWKVCNVTAGPDFIPCLDNWKVIR 280
Query: 288 KLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQ 347
LRSTKHYEHRERHCPEEPPTCLV LPEGYK SIEWP SREKIWYYNVPHTKLA++KGHQ
Sbjct: 281 SLRSTKHYEHRERHCPEEPPTCLVSLPEGYKCSIEWPKSREKIWYYNVPHTKLAEVKGHQ 340
Query: 348 NWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFL 407
NWVKVTGEYLTFPGGGTQFK+GALHYIDFIQE++PD+AWGKRTRV+LDVGCGVASFGGFL
Sbjct: 341 NWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETLPDIAWGKRTRVILDVGCGVASFGGFL 400
Query: 408 FDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467
FDR VL MS APKDEHEAQVQFALERGIPAISAVMGT+RLPFPG VFDAVHCARCRVPWH
Sbjct: 401 FDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGRVFDAVHCARCRVPWH 460
Query: 468 IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTI 527
IEGGKLLLELNRVLRPGGFF+WSATP+YQKLPEDVEIWN M L K++CWELVSISKD +
Sbjct: 461 IEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKALTKSICWELVSISKDQV 520
Query: 528 NKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQW 587
N VG+A+Y+KP SN+CYE+RS+ +PP+C SDDPNAAW++ LQAC+HKVP S ERGSQW
Sbjct: 521 NGVGVAIYKKPLSNDCYEQRSKNEPPLCQKSDDPNAAWYIKLQACIHKVPVSSSERGSQW 580
Query: 588 PEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNV 647
PE+WPARL PYWL SSQVGVYGK APEDF AD +HWKRVVSKSYLNG+GI WS VRNV
Sbjct: 581 PEKWPARLTNVPYWLSSSQVGVYGKPAPEDFAADNKHWKRVVSKSYLNGLGIQWSNVRNV 640
Query: 648 MDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYD 707
MDM S+YGGFAAA+KD+++WVMNV+SIDS DTLPIIYERGLFGIYHDWCESFSTYPRTYD
Sbjct: 641 MDMNSIYGGFAAALKDLNIWVMNVVSIDSADTLPIIYERGLFGIYHDWCESFSTYPRTYD 700
Query: 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767
LLHADHLFSK++KRCNL ++VAEVDRILRPEGKLIVRD VE INELESMVK MQWEVRMT
Sbjct: 701 LLHADHLFSKVQKRCNLASLVAEVDRILRPEGKLIVRDTVEVINELESMVKSMQWEVRMT 760
Query: 768 YSKDKEGLLCVEKSMWRPKELETIKYAIA 796
YSKDKEGLLCV+KS WRPKE ET+KYAI
Sbjct: 761 YSKDKEGLLCVQKSTWRPKETETLKYAIV 789
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526844|ref|XP_003532026.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1207 bits (3124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/833 (70%), Positives = 673/833 (80%), Gaps = 43/833 (5%)
Query: 1 MANGKYTRVDGR-RSASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQ-- 57
MA KYTR+D + SSYCSTVTI VFVALCL G+WMMTSSS V PVQNVD +
Sbjct: 1 MAQAKYTRIDNNNKRPSSYCSTVTIVVFVALCLFGIWMMTSSS---VTPVQNVDVSQENN 57
Query: 58 ---EKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQEN---IEKSDEKSN 111
+++SEAKEQ T+ + ++S QQFEDN DL EDATKG + N EK DEKS+
Sbjct: 58 NEVKEQSEAKEQPTDPSNNNS-QQFEDNRGDLSEDATKGDGSVTPATNYDVTEKQDEKSD 116
Query: 112 EESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKK 171
E+S+ + +T+N D+ ++ S +D +++DESEKKS SDE+ KSDSD+ EKK
Sbjct: 117 EKSQEKPSEDTKTENQDSSVSEKRSDSDESEKRSDSDESEKKSDSDESEKKSDSDESEKK 176
Query: 172 SD--------------RKSEESSGEK--VDGQVEEKEDQNENKESEKSSDDKKE------ 209
SD +KSE + EK E+E+++++ E+EK SDD E
Sbjct: 177 SDSDESEKKSDSDESEKKSEYNETEKNSESNDSSERENKSDSDENEKKSDDASETTDKTE 236
Query: 210 ------DGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGY 263
D + +Q SNE++PS AQ EL NE+TTQ GSF+TQA ESKNEKE+Q SS Q
Sbjct: 237 EKVEQNDNANSQGSNEVYPSVAQSELLNESTTQNGSFTTQAAESKNEKESQVSSKQ--SA 294
Query: 264 NWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEW 323
NWKLCNVTAG D+IPCLDNL+AIK L STKHYEHRER CP+E PTCLVPLPEGYKR IEW
Sbjct: 295 NWKLCNVTAGPDYIPCLDNLKAIKSLPSTKHYEHRERQCPKESPTCLVPLPEGYKRPIEW 354
Query: 324 PTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPD 383
P SREKIWY NVPHTKLA+ KGHQNWVKVTGEYLTFPGGGTQFK+GALHYID IQ+SVPD
Sbjct: 355 PKSREKIWYSNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDTIQQSVPD 414
Query: 384 VAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMG 443
+AWG R+RV+LDVGCGVASFGGFLF+R VLTMS APKDEHEAQVQFALERGIPAISAVMG
Sbjct: 415 IAWGNRSRVILDVGCGVASFGGFLFERDVLTMSLAPKDEHEAQVQFALERGIPAISAVMG 474
Query: 444 TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503
T+RLP+PG VFD VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATP+YQKLPEDVE
Sbjct: 475 TKRLPYPGRVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVE 534
Query: 504 IWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNA 563
IWN M L KAMCWE+VSISKD +N VGIAVY+KPTSNECYEKRSQ QPP+C SDDPNA
Sbjct: 535 IWNEMKALTKAMCWEVVSISKDKLNGVGIAVYKKPTSNECYEKRSQNQPPICPDSDDPNA 594
Query: 564 AWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYE 623
AW+VPLQACMHKVP S ERGSQWPE+WPARL PYWL +SQVGVYGK APEDFTADY
Sbjct: 595 AWNVPLQACMHKVPVSSTERGSQWPEKWPARLTNIPYWLTNSQVGVYGKPAPEDFTADYG 654
Query: 624 HWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPII 683
HWKR+VSKSYLNG+GINWS +RNVMDMRSVYGGFAAA+KD+++WVMNV+S++S DTLP+I
Sbjct: 655 HWKRIVSKSYLNGIGINWSNMRNVMDMRSVYGGFAAALKDLNIWVMNVVSVNSADTLPLI 714
Query: 684 YERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743
YERGLFG+YHDWCESFSTYPR+YDLLHAD+LFS IK RC+L AVVAE+DRILRPEGKLIV
Sbjct: 715 YERGLFGMYHDWCESFSTYPRSYDLLHADNLFSNIKNRCSLKAVVAEIDRILRPEGKLIV 774
Query: 744 RDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
RD VE INE+ESMVK MQWEVRMTYSKDK G LCV+KSMWRPKELET++YAI
Sbjct: 775 RDTVEIINEMESMVKSMQWEVRMTYSKDKVGFLCVQKSMWRPKELETLEYAIG 827
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 796 | ||||||
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.729 | 0.700 | 0.796 | 6.4e-287 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.723 | 0.748 | 0.733 | 1.1e-258 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.729 | 0.754 | 0.719 | 5.2e-254 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.708 | 0.630 | 0.685 | 3.9e-244 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.640 | 0.865 | 0.516 | 8.2e-154 | |
| TAIR|locus:2016392 | 724 | AT1G19430 [Arabidopsis thalian | 0.672 | 0.738 | 0.467 | 9.6e-148 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.635 | 0.741 | 0.449 | 1.1e-126 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.636 | 0.774 | 0.456 | 8.9e-125 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.655 | 0.752 | 0.422 | 4e-122 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.629 | 0.824 | 0.426 | 1.8e-110 |
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2573 (910.8 bits), Expect = 6.4e-287, Sum P(2) = 6.4e-287
Identities = 463/581 (79%), Positives = 512/581 (88%)
Query: 215 QSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGA 274
++S +L P GAQLEL NETT Q GSFSTQATESKNEKEAQ+ S + Y W LCN TAG
Sbjct: 248 ETSGDLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGSGDKLDYKWALCNTTAGP 307
Query: 275 DFIPCLDNLQAIKKLRSTKHYXXXXXXXXXXXXTCLVPLPEGYKRSIEWPTSREKIWYYN 334
D+IPCLDN+QAI+ L STKHY TCLVPLP+GYKR IEWP SREKIWY N
Sbjct: 308 DYIPCLDNVQAIRSLPSTKHYEHRERHCPDSPPTCLVPLPDGYKRPIEWPKSREKIWYTN 367
Query: 335 VPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVL 394
VPHTKLA+ KGHQNWVKVTGEYLTFPGGGTQFK+GALHYIDFIQESVP +AWGKR+RVVL
Sbjct: 368 VPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVL 427
Query: 395 DVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVF 454
DVGCGVASFGGFLFDR V+TMS APKDEHEAQVQFALERGIPAISAVMGT RLPFPG VF
Sbjct: 428 DVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVF 487
Query: 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA 514
D VHCARCRVPWHIEGGKLLLELNRVLRPGGFF+WSATPVYQK EDVEIW AMS+LIK
Sbjct: 488 DIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKK 547
Query: 515 MCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMH 574
MCWELVSI+KDTIN VG+A YRKPTSNECY+ RS+ PP+C SDDPNA+W VPLQACMH
Sbjct: 548 MCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMH 607
Query: 575 KVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYL 634
PE+ +RGSQWPEQWPARLEK P+WL SSQ GVYGK+APEDF+ADYEHWKRVV+KSYL
Sbjct: 608 TAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYL 667
Query: 635 NGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHD 694
NG+GINW++VRNVMDMR+VYGGFAAA++D+ VWVMNV+ IDSPDTL IIYERGLFGIYHD
Sbjct: 668 NGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHD 727
Query: 695 WCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELE 754
WCESFSTYPR+YDLLHADHLFSK+K+RCNL AV+AEVDR+LRPEGKLIVRDD ETI ++E
Sbjct: 728 WCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVE 787
Query: 755 SMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAI 795
MVK M+WEVRMTYSK+KEGLL V+KS+WRP E+ET+ YAI
Sbjct: 788 GMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAI 828
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2370 (839.3 bits), Expect = 1.1e-258, Sum P(2) = 1.1e-258
Identities = 427/582 (73%), Positives = 492/582 (84%)
Query: 215 QSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGA 274
+ S ++FP+G Q E+T E++T G++STQ ES+NEK+AQ SS WK+CNVTAG
Sbjct: 195 EKSKDVFPAGDQAEITKESSTGSGAWSTQLVESQNEKKAQVSS-----IKWKVCNVTAGP 249
Query: 275 DFIPCLDNLQAIKKLRSTKHYXXXXXXXXXXXXTCLVPLPEGYKRSIEWPTSREKIWYYN 334
D+IPCLDN QAI+KL STKHY CLV LPEGYKRSI+WP SREKIWY N
Sbjct: 250 DYIPCLDNWQAIRKLHSTKHYEHRERHCPEESPRCLVSLPEGYKRSIKWPKSREKIWYTN 309
Query: 335 VPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVL 394
+PHTKLA++KGHQNWVK++GEYLTFPGGGTQFKNGALHYIDF+QES PD+AWG RTRV+L
Sbjct: 310 IPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVIL 369
Query: 395 DVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVF 454
DVGCGVASFGG+LFDR VL +SFAPKDEHEAQVQFALERGIPA+S VMGT+RLPFPG VF
Sbjct: 370 DVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVF 429
Query: 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA 514
D +HCARCRVPWHIEGGKLLLELNR LRPGGFF+WSATPVY+K EDV IW AMS+L KA
Sbjct: 430 DLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKA 489
Query: 515 MCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMH 574
MCWEL++I KD +N+VG A+Y+KP SN+CY +RSQ +PP+C SDD NAAW+VPL+AC+H
Sbjct: 490 MCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIH 549
Query: 575 KVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYL 634
KV E+S +RG+ WPE WP R+E P WL SQ GVYGK A EDFTAD+E WK +VSKSYL
Sbjct: 550 KVTEDSSKRGAVWPESWPERVETVPQWL-DSQEGVYGKPAQEDFTADHERWKTIVSKSYL 608
Query: 635 NGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHD 694
NGMGI+WS VRNVMDMR+VYGGFAAA+KD+ +WVMNV+ IDSPDTLPIIYERGLFGIYHD
Sbjct: 609 NGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHD 668
Query: 695 WCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELE 754
WCESFSTYPRTYDLLHADHLFS +KKRCNLV V+AEVDRILRP+G IVRDD+ETI E+E
Sbjct: 669 WCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIE 728
Query: 755 SMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
MVK M+W VRMT+SKD EGLL V+KS WRP E ETI+ AIA
Sbjct: 729 KMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAIA 770
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2347 (831.2 bits), Expect = 5.2e-254, Sum P(2) = 5.2e-254
Identities = 420/584 (71%), Positives = 492/584 (84%)
Query: 215 QSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSS--NQQNGYNWKLCNVTA 272
+SS E+FP+G Q E+T E++T G++STQ ES+NEK+AQQSS Q+ Y WK CNVTA
Sbjct: 188 KSSKEVFPAGDQAEITKESSTGDGAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTA 247
Query: 273 GADFIPCLDNLQAIKKLRSTKHYXXXXXXXXXXXXTCLVPLPEGYKRSIEWPTSREKIWY 332
G D+IPCLDN QAIKKL +T HY CLV LP+GYKRSI+WP SREKIWY
Sbjct: 248 GPDYIPCLDNWQAIKKLHTTMHYEHRERHCPEESPHCLVSLPDGYKRSIKWPKSREKIWY 307
Query: 333 YNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRV 392
NVPHTKLA+IKGHQNWVK++GE+LTFPGGGTQFKNGALHYIDFIQ+S P +AWG RTRV
Sbjct: 308 NNVPHTKLAEIKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRV 367
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452
+LDVGCGVASFGG+LF+R VL +SFAPKDEHEAQVQFALERGIPA+ VMGT+RLPFPG
Sbjct: 368 ILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGS 427
Query: 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLI 512
VFD +HCARCRVPWHIEGGKLLLELNR LRPGGFF+WSATPVY+K ED IW AMS+L
Sbjct: 428 VFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELT 487
Query: 513 KAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQAC 572
KAMCW+LV+I KD +N+VG A+Y+KPTSN+CY KR Q +PP+C SDD NAAW+VPL+AC
Sbjct: 488 KAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEAC 547
Query: 573 MHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKS 632
MHKV E+S +RG+ WP WP R+E P WL SQ GVYGK APEDFTAD E WK +VSK+
Sbjct: 548 MHKVTEDSSKRGAVWPNMWPERVETAPEWL-DSQEGVYGKPAPEDFTADQEKWKTIVSKA 606
Query: 633 YLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIY 692
YLN MGI+WS VRNVMDMR+VYGGFAAA+KD+ +WVMNV+ +D+PDTLPIIYERGLFGIY
Sbjct: 607 YLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIY 666
Query: 693 HDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINE 752
HDWCESF+TYPRTYDLLHADHLFS ++KRCNLV+V+AE+DRILRP+G I+RDD+ET+ E
Sbjct: 667 HDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGE 726
Query: 753 LESMVKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKYAIA 796
+E MVK M+W+V+MT SKD EGLL +EKS WRP+E ETIK AIA
Sbjct: 727 VEKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAIA 770
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2202 (780.2 bits), Expect = 3.9e-244, Sum P(4) = 3.9e-244
Identities = 390/569 (68%), Positives = 469/569 (82%)
Query: 223 SGAQLELTNETTTQKGSFSTQATESKNEKEAQQS-SNQ----QNGYNWKLCNVTAGADFI 277
SG + E+ + S+ +QATESK+EK+ Q S SN +G W LCN TAG D+I
Sbjct: 324 SGFGSGIPKESAESQKSWKSQATESKDEKQRQTSESNTVERIMDGNAWVLCNATAGTDYI 383
Query: 278 PCLDNLQAIKKLRSTKHYXXXXXXXXXXXXTCLVPLPEGYKRSIEWPTSREKIWYYNVPH 337
PCLDN +AI KLRS +H+ TCLVPLPEGYK +I+WP SR+KIWY+NVPH
Sbjct: 384 PCLDNEEAIMKLRSRRHFEHRERHCPEDPPTCLVPLPEGYKEAIKWPESRDKIWYHNVPH 443
Query: 338 TKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVG 397
TKLA++KGHQNWVKVTGE+LTFPGGGTQF +GALHYIDF+Q+S+ ++AWGKRTRV+LDVG
Sbjct: 444 TKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVG 503
Query: 398 CGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAV 457
CGVASFGGFLF+R V+ MS APKDEHEAQVQFALER IPAISAVMG++RLPFP VFD +
Sbjct: 504 CGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLI 563
Query: 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCW 517
HCARCRVPWH EGG LLLELNR+LRPGG+F+WSATPVYQKL EDV+IW MS L K++CW
Sbjct: 564 HCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCW 623
Query: 518 ELVSISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVP 577
ELV+I+KD +N +G A+Y+KP +NECYEKR +PP+C +DD NAAW+VPLQACMHKVP
Sbjct: 624 ELVTINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVP 683
Query: 578 EESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGM 637
+ERGS+WP WP RL+ PYWL SSQ+G+YGK AP DFT DYEHWK VVSK Y+N +
Sbjct: 684 TNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEI 743
Query: 638 GINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCE 697
GI+WS VRNVMDMR+VYGGFAAA+KD+ VWVMNV++I+SPDTLPIIYERGLFGIYHDWCE
Sbjct: 744 GISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCE 803
Query: 698 SFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMV 757
SFSTYPR+YDLLHADHLFSK++ RCNLV V+AEVDRI+RP GKLIVRD+ I E+E+M+
Sbjct: 804 SFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENML 863
Query: 758 KGMQWEVRMTYSKDKEGLLCVEKSMWRPK 786
K + W+V +T+SK +EG+L +K WRP+
Sbjct: 864 KSLHWDVHLTFSKHQEGILSAQKGFWRPE 892
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
Identities = 270/523 (51%), Positives = 357/523 (68%)
Query: 244 ATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYXXXXXXXX 303
+++ +K +S + W LC D+IPCLDN AIK+L+S +H
Sbjct: 59 SSDQTPQKMKLNTSLEVGELKWDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCP 118
Query: 304 XXXXTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGG 363
CL+PLP+ YK + WP SR+ IWY NVPH KL + K QNWVK GE+L FPGGG
Sbjct: 119 EPSPKCLLPLPDNYKPPVPWPKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGG 178
Query: 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH 423
TQFK G HY++FI++++P + WGK RVVLDVGCGVASFGG L D+ V+TMSFAPKDEH
Sbjct: 179 TQFKFGVTHYVEFIEKALPSIKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEH 238
Query: 424 EAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483
EAQ+QFALERGIPA +V+GT++L FP FD +HCARCRV W +GGK LLELNRVLRP
Sbjct: 239 EAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRP 298
Query: 484 GGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNEC 543
GGFFIWSATPVY+ D IWN M L K++CW++V+ + D+ + +G+ +Y+KPTS C
Sbjct: 299 GGFFIWSATPVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDS-SGIGLVIYQKPTSESC 357
Query: 544 YEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLL 603
Y KRS Q PP+C + N +W+VPL C+ K+P +++ WPE WP RL +
Sbjct: 358 YNKRSTQDPPLC-DKKEANGSWYVPLAKCLSKLPSGNVQ---SWPELWPKRLVSVKPQSI 413
Query: 604 SSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKD 663
S + E D E W VS YL + +NWSTVRNVMDM + +GGFAAA+ +
Sbjct: 414 SVKA--------ETLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN 465
Query: 664 ISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCN 723
+ +WVMNV+ +D PDTL ++Y+RGL G+YHDWCES +TYPRTYDLLH+ L + +RC
Sbjct: 466 LPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCE 525
Query: 724 LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766
+V VVAE+DRI+RP G L+V+D++ETI +LES++ + W ++
Sbjct: 526 IVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTKI 568
|
|
| TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1411 (501.8 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 261/558 (46%), Positives = 363/558 (65%)
Query: 231 NETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLR 290
+E +K T SK K + + Y+W+LCN + +++PC+DN I +L+
Sbjct: 187 DEEVEEKNEEVTVNEISKKRKRKGPVFDPKAEYSWRLCNTRSKHNYMPCIDNDGLIGRLQ 246
Query: 291 STKHYXXXXXXXXXXXXTCLVPLP-EGYKRSIEWPTSREKIWYYNVPHTKLAK-IKGHQN 348
S +H CLVPLP +GY + WP S+ KI Y NV H KLA IK H N
Sbjct: 247 SYRH---RERSCPKKPVMCLVPLPHDGYDPPVSWPESKSKILYKNVAHPKLAAYIKKH-N 302
Query: 349 WVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF 408
WV TGEYL+FP T F L Y++FIQE VPD+ WGK R+VLD+GC +SF L
Sbjct: 303 WVNETGEYLSFPQNQTTFNGNVLQYLEFIQEMVPDIEWGKNVRIVLDIGCSDSSFVAALL 362
Query: 409 DRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468
D+ VLT+S KD+ Q ALERG P + + + RLPFP VFD +HCA C V WH
Sbjct: 363 DKDVLTVSLGLKDDLVDLAQVALERGFPTFVSSLASRRLPFPSGVFDTIHCAACGVHWHS 422
Query: 469 EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTIN 528
GGKLLLE+NR+LRP G+FI S+ K+ +D AM+ L ++CW +++ + +
Sbjct: 423 HGGKLLLEMNRILRPNGYFILSSNN--DKIEDD----EAMTALTASICWNILAHKTEEAS 476
Query: 529 KVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWP 588
++G+ +Y+KP SN+ YE R ++ PP+C +++P+AAW+VP++ C++++P + G++WP
Sbjct: 477 EMGVRIYQKPESNDIYELRRKKNPPLCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWP 536
Query: 589 EQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVM 648
E+WP RLE P WL S + A ED HW +V+KSYL G+GI+W +RNVM
Sbjct: 537 EEWPKRLETYPEWLTSKE------KAMEDTN----HWNAMVNKSYLTGLGIDWLHIRNVM 586
Query: 649 DMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDL 708
DM ++YGGF A++ +VWVMNV+ + SPDTLP IYERGL GIYHDWCE F TYPR+YDL
Sbjct: 587 DMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPRSYDL 646
Query: 709 LHADHLFSKIKKRCNLVA-VVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767
LHADHLFS++K RC A +V E+DR+ RP G ++VRD VE + LE +++ + WE+RMT
Sbjct: 647 LHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMT 706
Query: 768 YSKDKEGLLCVEKSMWRP 785
Y++DKEG+LC +K++WRP
Sbjct: 707 YAQDKEGMLCAQKTLWRP 724
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
Identities = 238/529 (44%), Positives = 339/529 (64%)
Query: 246 ESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYXXXXXX--XX 303
ES ++ + + ++ + + +++C+ ++IPCLDN++AIK+L ST
Sbjct: 130 ESSDDDDIKSTTARVSVRKFEICSENM-TEYIPCLDNVEAIKRLNSTARGERFERNCPND 188
Query: 304 XXXXTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGG 363
C VP+P+GY+ I WP SR+++W+ NVPHTKL + KG QNW+ + FPGGG
Sbjct: 189 GMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGG 248
Query: 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH 423
TQF +GA Y+D I + +PD+++G TRVVLD+GCGVASFG +L R VLTMS APKD H
Sbjct: 249 TQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVH 308
Query: 424 EAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483
E Q+QFALERG+PA+ A T RL +P FD VHC+RCR+ W + G LLLE+NR+LR
Sbjct: 309 ENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRA 368
Query: 484 GGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG-IAVYRKPTSNE 542
GG+F+W+A PVY+ E W M L +CW LV K G IA+++KP +N
Sbjct: 369 GGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVK-------KEGYIAIWQKPVNNT 421
Query: 543 CYEKRSQQ-QPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYW 601
CY R PP+C DDP+ W+V L+AC+ ++ E G+ WPARL P
Sbjct: 422 CYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY--GANLAP-WPARLLTPPDR 478
Query: 602 LLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTV--RNVMDMRSVYGGFAA 659
L + Q+ Y + E F A+ ++WK ++S +Y+N + +W + RNV+DMR+ +GGFAA
Sbjct: 479 LQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNAL--HWKQIGLRNVLDMRAGFGGFAA 534
Query: 660 AMKDISV--WVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717
A+ ++ V WV+NVI + P+TLP+IY+RGL G+ HDWCE F TYPRTYDLLHA LFS
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSI 594
Query: 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766
+KRCN+ ++ E+DRILRP G++ +RD + +EL+ + M+W +
Sbjct: 595 ERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 240/526 (45%), Positives = 327/526 (62%)
Query: 241 STQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIKKLRSTKHYXXXXX 300
S S EKE+ + Q KLC+ T D+IPCLDN + IK+L +T
Sbjct: 121 SATGNSSVEEKESPEVGFQIE--KLKLCDKTK-IDYIPCLDNEEEIKRLNNTDRGENYER 177
Query: 301 XXXXXXXTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFP 360
CL+P P+GYK+ I+WP SR+KIW+ NVPHT+L + KG QNW++ + FP
Sbjct: 178 HCPKQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFP 237
Query: 361 GGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK 420
GGGTQF +GA Y+D I + +PD+ +G RTRV LD+GCGVASFG FL R T+S APK
Sbjct: 238 GGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPK 297
Query: 421 DEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRV 480
D HE Q+QFALERG+PA+ AV T RL +P F+ +HC+RCR+ W + G LLLE+NR+
Sbjct: 298 DVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRM 357
Query: 481 LRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG-IAVYRKPT 539
LR GG+F+W+A PVY+ E W M L +CWEL I K G IAV+RKP
Sbjct: 358 LRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWEL-------IKKEGYIAVWRKPL 410
Query: 540 SNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKT 598
+N CY R +PP+C DDP+ W+V ++ C+ ++P+ G+ WPARL
Sbjct: 411 NNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY--GAN-VSTWPARLHDP 467
Query: 599 PYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWSTVRNVMDMRSVYGGFA 658
P L S Q+ Y S E A+ W VV +SY+ +RNV+DMR+ +GGFA
Sbjct: 468 PERLQSIQMDAY-ISRKEIMKAESRFWLEVV-ESYVRVFRWKEFKLRNVLDMRAGFGGFA 525
Query: 659 AAMKDISV--WVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFS 716
AA+ D+ + WVMN++ + +TLP+IY+RGL G HDWCE F TYPRTYDL+HA LFS
Sbjct: 526 AALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS 585
Query: 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762
KKRCN+ ++ E+DR+LRP G + +RD + +++L+ + K + W
Sbjct: 586 VEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 230/545 (42%), Positives = 339/545 (62%)
Query: 228 ELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAIK 287
E+ ++T G+ T+ E+K++ +++ + + +C + ++IPCLDN IK
Sbjct: 144 EVESDTVEDWGN-QTEIVEAKSDGDSKARVRIKK---FGMCPESM-REYIPCLDNTDVIK 198
Query: 288 KLRSTKHYXXXXXX--XXXXXXTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKG 345
KL+ST+ CLVP P+GY++ I WP SR+++W+ NVPHT+L + KG
Sbjct: 199 KLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKG 258
Query: 346 HQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGG 405
QNW+ FPGGGTQF +GA Y+D + + V D+ +GK RV +DVGCGVASFG
Sbjct: 259 GQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITFGKHIRVAMDVGCGVASFGA 318
Query: 406 FLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465
+L R V+TMS APKD HE Q+QFALERG+PA++A T RL +P FD +HC+RCR+
Sbjct: 319 YLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRIN 378
Query: 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525
W + G LLLE+NR+LR GG+F W+A PVY+ P E W M L ++CW+LV
Sbjct: 379 WTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVK---- 434
Query: 526 TINKVG-IAVYRKPTSNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQACMHKVPEESLER 583
K G +A+++KP +N+CY R +PP+C SDDP+ W+ L+ C+ ++PE+
Sbjct: 435 ---KEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGY-- 489
Query: 584 GSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSYLNGMGINWST 643
G P WPARL P L + + Y + E F A+ ++W ++ Y+ +
Sbjct: 490 GGNVP-LWPARLHTPPDRLQTIKFDSY-IARKELFKAESKYWNEIIG-GYVRALKWKKMK 546
Query: 644 VRNVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFST 701
+RNV+DMR+ +GGFAAA+ D + WV++V+ + P+TLP+IY+RGL G+ HDWCE F T
Sbjct: 547 LRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDT 606
Query: 702 YPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQ 761
YPRTYD LHA LFS +KRC + ++ E+DRILRP G+ +RD ++ ++E++ + K M
Sbjct: 607 YPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMG 666
Query: 762 WEVRM 766
W +
Sbjct: 667 WHTSL 671
|
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| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 227/532 (42%), Positives = 315/532 (59%)
Query: 274 ADFIPCLD-NL---QAIK-KLRSTKHYXXXXXXXXXXXXTCLVPLPEGYKRSIEWPTSRE 328
++ IPCLD NL +K L +HY CL+P P GYK I+WP SR+
Sbjct: 84 SELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRF-NCLIPPPNGYKVPIKWPKSRD 142
Query: 329 KIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESV--PDVAW 386
++W N+PHT LA K QNW+ V G+ + FPGGGT F GA YI + + P+
Sbjct: 143 EVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANMLNYPNNVL 202
Query: 387 --GKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT 444
G R R V DVGCGVASFGG+L +LTMS AP D H+ Q+QFALERGIPA V+GT
Sbjct: 203 NNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGT 262
Query: 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEI 504
+RLP+P F+ HC+RCR+ W G LLLEL+RVLRPGG+F +S+ Y + ED+ I
Sbjct: 263 KRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRI 322
Query: 505 WNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECY-EKRSQQQPPVCLGSDDPNA 563
W MS L++ MCW++ + T+ +++KP +N+CY E+ QPP+C +DP+A
Sbjct: 323 WREMSALVERMCWKIAAKRNQTV------IWQKPLTNDCYLEREPGTQPPLCRSDNDPDA 376
Query: 564 AWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYE 623
W V ++AC+ + + WPARL P ++ +G S F D E
Sbjct: 377 VWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPP-----PRLADFGYSTGM-FEKDTE 430
Query: 624 HWKRVVSKSY-LNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPI 682
W++ V + L I TVRN+MDM++ G FAAA+K+ VWVMNV+ D P+TL +
Sbjct: 431 LWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKL 490
Query: 683 IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR-CNLVAVVAEVDRILRPEGKL 741
IY+RGL G H WCE+FSTYPRTYDLLHA + S IKK+ C+ V ++ E+DRILRP G +
Sbjct: 491 IYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFI 550
Query: 742 IVRDDVETINELESMVKGMQWE---VRMTYSKDKEG---LLCVEKSMWRPKE 787
I+RD ++ ++ +K + WE + D++ + V+K +W E
Sbjct: 551 IIRDKQRVVDFVKKYLKALHWEEVGTKTDSDSDQDSDNVVFIVQKKLWLTSE 602
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8L7V3 | PMTQ_ARATH | 2, ., 1, ., 1, ., - | 0.6778 | 0.9962 | 0.9565 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_VII1503 | hypothetical protein (825 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 796 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 3e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-07 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-06 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 2e-06 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 2e-06 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 3e-06 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-06 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 6e-06 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 6e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 7e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 4e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 5e-05 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 6e-05 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 6e-05 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 7e-05 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 4e-04 | |
| COG5137 | 279 | COG5137, COG5137, Histone chaperone involved in ge | 4e-04 | |
| PTZ00341 | 1136 | PTZ00341, PTZ00341, Ring-infected erythrocyte surf | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-04 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 5e-04 | |
| PTZ00341 | 1136 | PTZ00341, PTZ00341, Ring-infected erythrocyte surf | 7e-04 | |
| PTZ00341 | 1136 | PTZ00341, PTZ00341, Ring-infected erythrocyte surf | 7e-04 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 7e-04 | |
| PTZ00482 | 844 | PTZ00482, PTZ00482, membrane-attack complex/perfor | 7e-04 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 8e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.001 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.001 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 0.001 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 0.001 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.002 | |
| PRK12903 | 925 | PRK12903, secA, preprotein translocase subunit Sec | 0.002 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.002 | |
| COG5644 | 869 | COG5644, COG5644, Uncharacterized conserved protei | 0.002 | |
| COG4499 | 434 | COG4499, COG4499, Predicted membrane protein [Func | 0.002 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 0.003 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| PTZ00341 | 1136 | PTZ00341, PTZ00341, Ring-infected erythrocyte surf | 0.004 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 877 bits (2268), Expect = 0.0
Identities = 299/515 (58%), Positives = 370/515 (71%), Gaps = 18/515 (3%)
Query: 275 DFIPCLDNLQAIKKLRSTKHYEHRERHCP--EEPPTCLVPLPEGYKRSIEWPTSREKIWY 332
D+IPCLDN +AIK L S + EHRERHCP EE CLVP P+GYK I WP SR+K+WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 333 YNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRV 392
NVPHTKLA+ KG QNWVKV G+ FPGGGTQF +GA YIDF+ + +PD+AWG R R
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452
LDVGCGVASFG +L R VLTMSFAPKD HEAQVQFALERG+PA+ V+GT RLP+P
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPED-VEIWNAMSQL 511
FD HC+RC +PWH G LLLE++RVLRPGG+F+ S PVY + ED E W AM L
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEAL 240
Query: 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQ 570
K++CW+LV+ K IA+++KP +N CY KR ++PP+C SDDP+AAW+VP++
Sbjct: 241 AKSLCWKLVAK------KGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPME 294
Query: 571 ACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVS 630
AC+ +PE S E G W E+WP RL P L S Q G + E F AD E WKR VS
Sbjct: 295 ACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQ---IGGVSAEAFKADTELWKRRVS 351
Query: 631 KSY-LNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLF 689
K L + I+ VRNVMDM + +GGFAAA+ D VWVMNV+ +DSPDTLP+IY+RGL
Sbjct: 352 KYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLI 411
Query: 690 GIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVET 749
GIYHDWCE FSTYPRTYDLLHADHLFS KKRCNL ++ E+DRILRP G +I+RDDV+
Sbjct: 412 GIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDV 471
Query: 750 INELESMVKGMQWEVRMTYSKD----KEGLLCVEK 780
+++++ + K M+WEVR+T ++D E +L +K
Sbjct: 472 LDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-09
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGS 120
SE + +E +++ D DL + +E +E++ ++++KSNE+S ++ S
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 3933
Query: 121 NRQTQNDDNKT---GDRDSKTDSEGGETNT---DESEKKSYSDENGNKSDSDDGEKKSDR 174
+ ++ DDNK DR K D E + DE + + + +++D + D
Sbjct: 3934 DLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDL 3993
Query: 175 K---SEESSGEKVDGQVEEKEDQNENKESEKSSDDK---KED-GSKNQSSNELFPSGAQL 227
K E + D + + E +ENKE + D+ ED +N + +E
Sbjct: 3994 KLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053
Query: 228 ELTN-ETTTQKGSFSTQATESKNEKEAQQSSNQQ 260
+L + + F E++ E S+++
Sbjct: 4054 DLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
|
Length = 4600 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 394 LDVGCGVASFGGFLFDRG---VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPF 449
LDVGCG L RG V + D + A +R V+G E LPF
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKR--APRKFVVGDAEDLPF 53
Query: 450 PGIVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFI 488
P FD V V H+ + L E+ RVL+PGG +
Sbjct: 54 PDESFDVVVS--SLVLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 54 EPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDAT-KGGKNEKIQENIEKSDEKSNE 112
+ QEK S + E L S ED L ED + NE ++ +SD +E
Sbjct: 3801 DLPQEK-SNSGE-LESGTGLGSGVGAEDITNTLNEDDDLEELANE--EDTANQSDLDESE 3856
Query: 113 ESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTD-----ESEKKSYSDENGNKSDSDD 167
+ + N T+ D + + +S ++ E + + + E S +++ ++ + +D
Sbjct: 3857 ARELESDMNGVTK-DSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEED 3915
Query: 168 GEKKSDRKSEESSGEKVDGQVEEKEDQN----------ENKESEKSSD---------DKK 208
++++KS E S + + KED N + E E S D D +
Sbjct: 3916 -LLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQ 3974
Query: 209 EDGSKNQSSNEL--FPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQN 261
E+ S+ NE P +L+ ++ E+ +E + +++ +++
Sbjct: 3975 ENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENK-EEADAEKD 4028
|
Length = 4600 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 35/231 (15%), Positives = 87/231 (37%), Gaps = 9/231 (3%)
Query: 40 SSSSSSVVPVQNVDEPAQEKKSEAKEQL-TESNESSSNQQFEDNNADLPEDATKGGKN-- 96
S++ + + K + + N ++SNQ D + +T N
Sbjct: 33 DSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNII 92
Query: 97 EKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYS 156
+ I +N+ +++ D + T N +D E + + + +
Sbjct: 93 DFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKN 152
Query: 157 DENGNKSDSDD---GEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSK 213
++ K+D+D + K+D + SS ++ + + + +S+ D +
Sbjct: 153 SDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTA 212
Query: 214 NQSSNEL---FPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQN 261
NQ S+ S + L+ + ++ + + S+++K+ ++SN +N
Sbjct: 213 NQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNTKN 263
|
Length = 619 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 30/250 (12%), Positives = 87/250 (34%), Gaps = 18/250 (7%)
Query: 30 LCLVGVWMMTSSSSSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFED-NNADLPE 88
+ L+ ++ + +S + + + K + + + +E+S + +D + AD
Sbjct: 8 IYLLSTTLVLPTLTSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNN 67
Query: 89 DATKGGKNEKI-QENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNT 147
+ + ++K + SD + + + + K D+ + + +
Sbjct: 68 TSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLF 127
Query: 148 DESEKKSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDK 207
+ + S + +S+ S++ S+ S D Q +++ + K ++
Sbjct: 128 NLN---SDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKP 184
Query: 208 KEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATE-------------SKNEKEAQ 254
+ S P+ + + ++ T + S S S++ K+ Q
Sbjct: 185 STSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQ 244
Query: 255 QSSNQQNGYN 264
+ Q+ +
Sbjct: 245 KDYASQSKKD 254
|
Length = 619 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 3e-06
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 44/236 (18%)
Query: 53 DEPAQEKKSEAKEQLTESNESSSNQQFEDNNA--------DLPEDATKGGKNEKI----- 99
D +E + E + + +E + Q E+N+ DLPED K +
Sbjct: 3949 DRQEKEDEEEMSDDVGIDDEIQPDIQ-ENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSD 4007
Query: 100 ---------QENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDES 150
EN E++D + +E + +D D++ D S + + N D
Sbjct: 4008 LEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGF 4067
Query: 151 EKKSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKED 210
E+ +E + E+ + E + +D K D K + S++ +E+
Sbjct: 4068 EENVQENEESTEDGVKSDEEL--EQGEVPEDQAIDN--HPKMD---AKSTFASAEADEEN 4120
Query: 211 GSKNQSSNELFPSGAQLELTNETTTQKGSFSTQAT------ESKNEKEAQQSSNQQ 260
K + E E +G+ + ++ KEA +++Q
Sbjct: 4121 TDKG--------IVGENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSEADRQ 4168
|
Length = 4600 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 39/108 (36%), Positives = 47/108 (43%), Gaps = 27/108 (25%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPK----------DEHEAQVQFALER---GIPAIS 439
VLDVGCG G A + D EA + A ER P +
Sbjct: 23 VLDVGCG----------PGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVE 72
Query: 440 AVMG-TERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGG 485
V G + LPFP FDAV + RV H+E + L E+ RVLRPGG
Sbjct: 73 FVRGDADGLPFPDGSFDAV-RS-DRVLQHLEDPARALAEIARVLRPGG 118
|
Length = 241 |
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 60 KSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDG 119
S+ + + ES ++ A K K K +E E SD+ EES+ +D
Sbjct: 121 NSKPVKNVLESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDE 180
Query: 120 SNRQTQNDDNKTGDRDSKTDSEG-----GETNTDESEKKSYSDENGNKSDSDDGEKKSDR 174
S + +D+ + + +DSE G E++ + N ++ + +
Sbjct: 181 SKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDES 240
Query: 175 KSEESSGEKVDGQVEEKEDQNENKESEKSS 204
SE S V E + KE + SS
Sbjct: 241 DSEISESRSVSDSEESSPPSKKPKEKKTSS 270
|
BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 50 QNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEK 109
Q V +P+ E EA E++ S + ++ D P++ T ++++ D +
Sbjct: 326 QEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQE--------DSE 377
Query: 110 SNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGE 169
S+EE D S+ ++Q+ + + DSE E+ SE+ S E+ N S + +
Sbjct: 378 SSEEDSLDTPSSSESQS-------TEEQADSESNES-LSSSEESPESTEDENSSSQEGLQ 429
Query: 170 KKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQLE 228
S S + + +ED +++++S +S +D S + S + P ++E
Sbjct: 430 SHSASTESRSQESQSEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEEDGQPKNTEIE 488
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGTERLP 448
+LD+GCG L G +++ D + ++ A ER G V LP
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV--DISKEALELAKERLRDKGPKVRFVVADARDLP 58
Query: 449 FPGIVFDAVHCARCRVPWHIEGG---KLLLELNRVLRPGG 485
F FD V CA + ++ LL E R+LRPGG
Sbjct: 59 FEEGSFDLVICAGLSLD-YLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 37/283 (13%)
Query: 47 VPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKS 106
++ E QE ++E K + +E + + E K ++ E E
Sbjct: 659 NGEESGGEAEQEGETETKGE--NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 107 DEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSD 166
E E +D +T + + D + ++EG E ++K E +++
Sbjct: 717 HEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGK 775
Query: 167 DGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQ 226
+ E + E +GE + + +E + E E + +K E ++++
Sbjct: 776 EDEDEG----EIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQ------ADD 825
Query: 227 LELTNETTTQKGSFSTQATESKNEKEAQQSSNQQNGYNWKLCNVTAGADFIPCLDNLQAI 286
E+ +ET Q+ + Q ++EK G D+ +
Sbjct: 826 TEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGG------------------DSEEEE 867
Query: 287 KKLRSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIEWPTSREK 329
++ + E E EE PL S+EWP +R+K
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENEEPL------SLEWPETRQK 904
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 35/188 (18%), Positives = 73/188 (38%), Gaps = 18/188 (9%)
Query: 50 QNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEK 109
++ + +SEA+E ES N +D+ E++ +N+ + E + E
Sbjct: 3844 EDTANQSDLDESEAREL-----ESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPE- 3897
Query: 110 SNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSD-DG 168
D ++ + D + +T+ + E + +E S E+ NK+ D D
Sbjct: 3898 -------DLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDR 3950
Query: 169 EKKSDRKSEESS-GEKVDGQVEEKEDQNENKESEKSSD---DKKEDGSKNQSSNELFPSG 224
++K D + G + Q + +E+ ++ + D D K D + S +
Sbjct: 3951 QEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLED 4010
Query: 225 AQLELTNE 232
+E +E
Sbjct: 4011 MDMEAADE 4018
|
Length = 4600 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 41 SSSSSVVPVQNVDEPAQEKKSEAKEQLTES-------NESSSNQQFEDNNADLPEDATKG 93
SS SS Q D P+QE SE++E++ N +S ++ ED+ + ED+
Sbjct: 332 SSESS----QEADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQEDSESS-EEDSLDT 386
Query: 94 GKNEKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKK 153
+ + Q E++D +SNE + S T+ D+N + ++ S E+ + ES+ +
Sbjct: 387 PSSSESQSTEEQADSESNESLSSSEESPESTE-DENSSSQEGLQSHSASTESRSQESQSE 445
Query: 154 SYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDD 206
S + SDS D + K + +S E E+ + +N ES K + D
Sbjct: 446 QDSRSEEDDSDSQDSSRS---KEDSNSTESASSSEEDGQPKNTEIESRKLTVD 495
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (104), Expect = 6e-05
Identities = 30/109 (27%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPA-------ISA 440
VLD+GCG L G D + A R A + A
Sbjct: 47 PGGLGVLDIGCGTG-RLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVA 105
Query: 441 VMGTERLPFP-GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488
LPF FD V V + K L EL RVL+PGG +
Sbjct: 106 DALGGVLPFEDSASFDLVISLL--VLHLLPPAKALRELLRVLKPGGRLV 152
|
Length = 257 |
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 27/206 (13%)
Query: 60 KSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKF-DD 118
SE E +E ED+ D K K++E + + KF
Sbjct: 323 VSEEDEDEDSDSEEEDEDDDEDD-DDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQR 381
Query: 119 GSNRQ-TQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRKSE 177
R+ +ND R + EG E + +E ++ G RK
Sbjct: 382 AEARKKEENDAEIEELRR---ELEGEEESDEEENEEPSKKNVGR------------RKFG 426
Query: 178 ESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETTTQK 237
+GEK + K++ + +K SD+++E + ++ E ++ N+ +
Sbjct: 427 PENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVE--------KVANKLLKRS 478
Query: 238 GSFSTQATESKNEKEAQQS-SNQQNG 262
+ E + ++E + G
Sbjct: 479 EKAQKEEEEEELDEENPWLKTTSSVG 504
|
This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 35/220 (15%)
Query: 37 MMTSSSSSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKN 96
M T+S+ + A+E+ + ++L ++S E+ L +
Sbjct: 1 MTTASTKAE--------LAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQI 52
Query: 97 EKIQENIEKSDEKSN---EESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGET------NT 147
+++ + + ++ E + + K + D
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Query: 148 DESEKKSY---------SDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQN--- 195
D+ + +Y +D++ + D DD + ++ + D ++ +D++
Sbjct: 113 DKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK 172
Query: 196 -ENKESEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETT 234
E KE EK SDD + + Q + T
Sbjct: 173 KEAKELEKLSDDDDFV-----WDEDDSEALRQARKDAKLT 207
|
Length = 509 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 4/194 (2%)
Query: 69 ESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGSNRQTQNDD 128
+S ES + + + D E + + K S+E + + DD + + ++D
Sbjct: 238 KSKESKGEDEEQASTQDSGESQSVEYPSRKFFRKSRISEE--DGRGELDDSNTMEVKSDS 295
Query: 129 NKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQV 188
+ + E+ D E +S D + S + +++D S+E+S E + V
Sbjct: 296 TENAGLSQSREHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVV 355
Query: 189 EEKEDQNENKESEKSSDDKKEDGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESK 248
E N + + S D + + S+ S + PS ++ + T E + + S ++E
Sbjct: 356 SESRGDNPDNTTSHSEDQEDSESSEEDSLDT--PSSSESQSTEEQADSESNESLSSSEES 413
Query: 249 NEKEAQQSSNQQNG 262
E ++S+ Q G
Sbjct: 414 PESTEDENSSSQEG 427
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 19/170 (11%)
Query: 49 VQNVDEPAQEKKSEAKEQLTESNESSSNQQFE-DNNADLPEDATKGGKNEKIQENIEKSD 107
V+ E E+ E + + + N ++ D + D A NE+ +E +E+SD
Sbjct: 128 VEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEE-EERLEESD 186
Query: 108 EKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDD 167
+ EE + S + EG +E E+++ ++G +
Sbjct: 187 GREEEEDEEVG-----------------SDSYGEGNRELNEEEEEEAEGSDDGEDVVDYE 229
Query: 168 GEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSS 217
GE+ ++ EE E+ + E E + E+ E ++++ K +
Sbjct: 230 GERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
|
Length = 279 |
| >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 34/169 (20%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 51 NVDEPAQEKKSEAKEQLTESN-ESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEK 109
N++E A+E E E+ E N E + + E+N + E+ + E ++EN+E++ E+
Sbjct: 946 NIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEE 1005
Query: 110 SNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGE 169
+ EE+ ++ + D+ + + + E + E + E + + ++ +
Sbjct: 1006 NVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYD 1065
Query: 170 KKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSN 218
+++ + EE+ E ++ VEE ++N + E ++ +E+ +N N
Sbjct: 1066 EENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEEN 1114
|
Length = 1136 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 19/192 (9%)
Query: 43 SSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQEN 102
S +P + E E + EAKE + + + E E G+ E +E
Sbjct: 681 SEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETE--AEGTEDEGEIETGEEG 738
Query: 103 IEKSDEKSNE---------ESKFDDGSNRQTQNDDNKTGDRDSKTDS-EGGETNTDESEK 152
E DE E E + + + K + + + + E GE DE +
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
Query: 153 KSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEK----EDQNENKESEKSSDDKK 208
E+ ++++ + ++ + ++ +V + E+ E+Q E K+ EK D
Sbjct: 799 GK--VEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG 856
Query: 209 E-DGSKNQSSNE 219
DG ++ E
Sbjct: 857 GSDGGDSEEEEE 868
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 25/236 (10%)
Query: 36 WMMTSSSSSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGK 95
++S S + Q +E ++ E +E+ E E S ++ ++ + E G
Sbjct: 423 KASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Query: 96 NEKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSY 155
E+++ + E + E + +N + R S+ G + ES ++
Sbjct: 483 EEEMEGSSEGDGDGEEPEEDAER------RNSEMAGISRMSEGQQPRGSSVQPESPQEEP 536
Query: 156 SDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQ 215
+S D E + EE E E + E + + K S+
Sbjct: 537 LQ-----PESMDAESVGEESDEELLAE------ESPLSSHTELEGVATPVETKISSSRKL 585
Query: 216 SSNELFPSGAQLELTNETTTQKGSFSTQA--------TESKNEKEAQQSSNQQNGY 263
+ S T +TT+ G+ S + KE +S N Y
Sbjct: 586 PPPPVSTSLENDSATVTSTTRNGNVSPHTPQDEQPPSGRKRKRKEEVESEPLGNQY 641
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 7e-04
Identities = 37/169 (21%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
Query: 50 QNVDEPAQEKKSEAKEQLTESN-ESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDE 108
+NV+E +E E E+ E N E + + E+N + E+ + E ++ENIE++ E
Sbjct: 961 ENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVE 1020
Query: 109 KSNEESKFDDGSNRQTQNDDNKTGDRDSKTDS--EGGETNTDESEKKSYSD-----ENGN 161
+ +EE+ + N + +++N ++ ++ E E N +E ++++ + E
Sbjct: 1021 EYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENI 1080
Query: 162 KSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKED 210
+ + ++ +++ + EE+ E V+ EE ++N + +E+ D+ E+
Sbjct: 1081 EENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEE 1129
|
Length = 1136 |
| >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 7e-04
Identities = 38/171 (22%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 50 QNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEK 109
+NV+E A+E +E + E+ E + + E+N + E+ + E ++ENIE++ E+
Sbjct: 953 ENVEEDAEEN---VEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEE 1009
Query: 110 SNEES------KFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKS 163
+ EE+ ++D+ + + + + + + + + E E N +E+ +++ E ++
Sbjct: 1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENI--EEYDEE 1067
Query: 164 DSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKN 214
+ ++ E+ + EE+ E V+ VEE E+ E E + ++ +E+ +N
Sbjct: 1068 NVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEEN 1118
|
Length = 1136 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 31/248 (12%)
Query: 41 SSSSSVVPVQNVDEPAQEKKS--------EAKEQLTESNESSSNQQFEDN-NADLPEDAT 91
+S+ +VPVQN KS E E+ + + S ++Q N + A
Sbjct: 225 TSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHAD 284
Query: 92 KGGKNEKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESE 151
+ ++ EN S+ + + + + + S ++ N S
Sbjct: 285 SKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSS 344
Query: 152 KKSYSDENGNK-----SDSDDGEKKSDRKSEESSGEKVD-------GQVEEKEDQNENKE 199
KS+S NG+ SD++ +K++ + S + K D G VE ENK
Sbjct: 345 PKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENC--IPENKI 402
Query: 200 SEKSSDDKKE-DGSKNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSN 258
S S+ ++ E D K Q+ EL + +E Q ++ K++ + N
Sbjct: 403 STPSAIERLEQDIKKLQA--EL---QQARQNESELRNQISLLTSLERSLKSDLGQLKKEN 457
Query: 259 Q--QNGYN 264
Q N
Sbjct: 458 DMLQTKLN 465
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
| >gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 62 EAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGSN 121
++ L + ++ + +ED+ D +AT G D+ E D+ ++
Sbjct: 81 NQRKSLDDDDDDEFDFLYEDDEDD-AGNATSGES--------STDDDSLLELPDRDEDAD 131
Query: 122 RQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGE------KKSDRK 175
Q ND D+D ++S+ TD+ K+S + + K + K +
Sbjct: 132 TQANNDQTNDFDQDDSSNSQ-----TDQGLKQSVNLSSAEKLIEEKKGQTENTFKFYNFG 186
Query: 176 SEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQ 215
++ DG + D +S+ DD + ++
Sbjct: 187 NDGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPESAEED 226
|
Length = 844 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 72 ESSSNQQFEDNNADLPEDATKGGK--NEKIQENIEKSDEKSNEESKFDDGSNRQTQNDDN 129
ES+ + + + D PED K NE I N EK E EE K ++ +
Sbjct: 522 ESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELK------KKWSSLAQ 575
Query: 130 KTGD--RDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQ 187
+D+ DS GE E+ DE GN D +D E SD + EES G V +
Sbjct: 576 LKSRFQKDATLDSIEGE------EELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAE 629
Query: 188 VEEKEDQNENKESEKSSDDKKED 210
EE D+ + + + + KKE+
Sbjct: 630 NEESADEVDYETEREENARKKEE 652
|
Length = 1077 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 383 DVAWGKRTR---------VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQV------ 427
W + VLDV CG G + + A K +V
Sbjct: 36 HRLWRRALISLLGIKPGDKVLDVACGT----------GDMALLLA-KSVGTGEVVGLDIS 84
Query: 428 --------QFALERGIPAISAVMG-TERLPFPGIVFDAVHCARC-R-VPWHIEGGKLLLE 476
+ ++G+ + V+G E LPFP FDAV + R V I+ K L E
Sbjct: 85 ESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT-DID--KALKE 141
Query: 477 LNRVLRPGGFFI 488
+ RVL+PGG +
Sbjct: 142 MYRVLKPGGRLL 153
|
Length = 238 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 102 NIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGN 161
E+ D++ E+SK DD D D G +E E+ DE+
Sbjct: 283 RGEEEDDEEEEDSKESADDL-----DDEFEPDDDDNFG-LGQGEEDEEEEEDGVDDEDEE 336
Query: 162 KSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSK 213
D D E++ D + ++ D ++++D+ E +E ++ K + ++
Sbjct: 337 DDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 53 DEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDAT-KGGKNEKIQENIEKSDEKS- 110
E +EKK E +E E + + + +D K + + E E +E +
Sbjct: 156 TEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAAL 215
Query: 111 NEESKFDDGSNRQTQN--DDNKTGDRDSKTDSEGGETNTDESEKKSYSDE---NGNKSDS 165
+E F+D +++ DD G + + D E G ++ D+ G+ ++
Sbjct: 216 GDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAEL 275
Query: 166 DDGEKKSDR---KSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKED----------GS 212
+D E + +++ E+ + E+++DQ+E + E + D K D
Sbjct: 276 EDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESP 335
Query: 213 KNQSSNE 219
K SS E
Sbjct: 336 KELSSFE 342
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 393 VLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450
VLD GCG + +RG V + +P +A+ + A + + E LP
Sbjct: 46 VLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAG-----DIESLPLA 100
Query: 451 GIVFDAV--HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNA 507
FD + A V W L EL RV+RPGG ++ T V LPE + W A
Sbjct: 101 TATFDLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT-TLVQGSLPELHQAWQA 155
|
Length = 251 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 15/149 (10%)
Query: 390 TRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-TERLP 448
VLD+GCG L R F D + A + + + G E+LP
Sbjct: 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLP 93
Query: 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNA- 507
FD + + W + + L EL RVL+PGG +S T L E + +
Sbjct: 94 LEDSSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSFGQH 151
Query: 508 ------MSQLIKAMC---WELVSISKDTI 527
+ + +KA+ +EL+++ ++ I
Sbjct: 152 GLRYLSLDE-LKALLKNSFELLTLEEELI 179
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 17/153 (11%), Positives = 53/153 (34%), Gaps = 10/153 (6%)
Query: 63 AKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKSNEESKFDDGSNR 122
A++ L + S D N E I + IE +E+ +
Sbjct: 781 AEKILIITEILSDGINNSDINDRP---------QELIDQIIESEEERLKALRIQREEMLM 831
Query: 123 QTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRKSE-ESSG 181
+ + + ++ + E + + ++ + N NK++ + + + ++ +
Sbjct: 832 RPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAK 891
Query: 182 EKVDGQVEEKEDQNENKESEKSSDDKKEDGSKN 214
+ + V ++ +++++ K E +
Sbjct: 892 DVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
|
Length = 925 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 9/160 (5%)
Query: 61 SEAKEQLTESNESSSNQQFEDNNADLPEDAT---KGGKNEKIQENIEKSDEKSNEESKFD 117
E E + + +D D +D KGG++ +++ +K + + + K D
Sbjct: 197 DEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLD 256
Query: 118 DGSNRQTQNDDNKTGDRDSKTDSEGGETN-TDESEKKSYSDENGNKSDSDDGEKKSDRKS 176
D + DD+ D EG E + +S E S + K + +
Sbjct: 257 DDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQ 316
Query: 177 EESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQS 216
+E S E EE++++ E S+K KK G KN
Sbjct: 317 DEDSEES-----EEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 6/167 (3%)
Query: 58 EKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGK--NEKIQENIEKSDEKSNEESK 115
E E E NA + K K N + ++ SD+ N +
Sbjct: 51 EDDEEIDSDEAFDEEDEKRFADWSFNASKSGKSNKDHKNLNNTKEISLNDSDDSVNSDKL 110
Query: 116 FDDGSNRQTQNDD----NKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKK 171
++GS ++ + D D +E G + ++ + + +DS+ E
Sbjct: 111 ENEGSVSSIDENELVDLDTLLDNDQPEKNESGNNDHATDKENLLESDASSSNDSESEESD 170
Query: 172 SDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSN 218
S+ + E S + D + K D N D+ + + N
Sbjct: 171 SESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSSDDN 217
|
Length = 869 |
| >gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 15/86 (17%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 123 QTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEKKSDRKSEESSGE 182
+ +++ + +GD+ + + + Y+ + G D D ++++ K++E +
Sbjct: 355 EVKSNTDLSGDKRQE------LLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Query: 183 KVDGQVEEKEDQNENKESEKSSDDKK 208
+ + + ++KE +E+KE + + KK
Sbjct: 409 QEENEKKQKEQADEDKEKRQKDERKK 434
|
Length = 434 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 13/199 (6%)
Query: 51 NVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDEKS 110
++ + Q + SE + N SS + D + + A S+++
Sbjct: 132 DISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQP 191
Query: 111 NEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGEK 170
N + D+ + S D++ + +S YS++ +
Sbjct: 192 NSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQS 251
Query: 171 KSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSNE--LFPSGAQLE 228
K D + + + Q+ + D+ ++K S E+ ++ LF +G L
Sbjct: 252 KKD---KTETSNTKNPQLPTQ-DELKHKSKPAQS---FENDVNQSNTRSTSLFETGPSL- 303
Query: 229 LTNETTTQKGSFSTQATES 247
N+ + GSF+ ++
Sbjct: 304 SNNDDS---GSFNVVDSKD 319
|
Length = 619 |
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 97 EKIQENIEKSDEKSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYS 156
EK +E K E DD + + D +D EG + + S
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEE-----DEDSDDEGEWIDVE-------S 123
Query: 157 DENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQS 216
D+ SDS+D E+K + + K D E E+ E E+ ++ +KE S+ +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKK----AKEDSDEELSEEDEEEAAEEEEAEAEKEKASELAT 179
Query: 217 SNELFPSGAQLELTNETTTQKGS 239
+ L P A E +KG
Sbjct: 180 TRILTP--ADFAKIQELRLEKGV 200
|
This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 47 VPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKS 106
+ + + A+E K +A+E + E + E+ K K I+E +++
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE-KEAVIEEELDEE 1788
Query: 107 DEKSNEESK------FDDGSNRQTQNDDNKTGDRDSKT--DSEGGETNTDESEKKSYSDE 158
DEK E FD+ +N + DSK DS E ++ + +D
Sbjct: 1789 DEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADA 1848
Query: 159 ------NGNKSDSDDGEKKSDRKSEESSGEKVDGQVEE----KEDQNENKESEKSSDDKK 208
N N + +DG K++D E+ E + ++EE ++ ++ E E +++
Sbjct: 1849 FEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
Length = 2084 |
| >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (93), Expect = 0.004
Identities = 31/171 (18%), Positives = 82/171 (47%), Gaps = 1/171 (0%)
Query: 49 VQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNEKIQENIEKSDE 108
+ +++ + + E L E E++ + E+N + E+ + E ++EN+E++ E
Sbjct: 921 INLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVE 980
Query: 109 KSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDG 168
++ EE+ ++ +N + + + E E N +E ++++ + N + D+
Sbjct: 981 ENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEE 1040
Query: 169 EKKS-DRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGSKNQSSN 218
+ + +EE+ E ++ +EE +++N + E ++ +E+ +N N
Sbjct: 1041 NVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEEN 1091
|
Length = 1136 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 796 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.85 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.73 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.6 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.54 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.46 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.46 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.45 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.44 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.39 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.37 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.34 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.34 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.33 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.33 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.32 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.32 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.31 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.3 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.3 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.28 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.26 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.25 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.23 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.22 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.22 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.2 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.16 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.15 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.15 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.14 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.12 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.11 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.11 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.1 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.08 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.08 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.07 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.07 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.05 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.05 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.03 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.03 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.03 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.02 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.02 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.02 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.02 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.02 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.01 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.0 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.98 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.97 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.97 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.97 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.96 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.96 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.95 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.95 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.94 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.91 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.9 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.9 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.88 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.87 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.86 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.86 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.85 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.85 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.85 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.84 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.84 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.83 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.82 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.82 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.81 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.8 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.8 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.79 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.77 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.77 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.75 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.74 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.73 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.72 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.7 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.68 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.68 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.64 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.62 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.61 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.6 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.6 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.58 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.54 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.54 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.53 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.53 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.53 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.5 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.45 | |
| PLN02366 | 308 | spermidine synthase | 98.44 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.43 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.4 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.36 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.36 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.36 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.35 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.35 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.34 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.33 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.33 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.32 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.31 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.31 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.26 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.25 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.25 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.21 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.21 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.19 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.18 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.09 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.09 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.09 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.06 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.04 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.01 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.0 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.99 | |
| PLN02476 | 278 | O-methyltransferase | 97.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.96 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.93 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.93 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.92 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.92 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.92 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.91 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.87 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.86 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.85 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.84 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.83 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.83 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.81 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.8 | |
| PLN02823 | 336 | spermine synthase | 97.78 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.75 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.74 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.68 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.68 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 97.68 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.66 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.66 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.65 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.64 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.63 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.6 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.58 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.57 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.56 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.51 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.51 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.47 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.47 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.47 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.46 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.45 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.43 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.43 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.43 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.43 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.43 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.4 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.39 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.37 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.36 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.35 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.35 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.35 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.33 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.33 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.32 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.31 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.3 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.28 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.25 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.24 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.22 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.21 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.19 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.19 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.18 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.17 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.16 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.15 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.14 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.14 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.14 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.1 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.09 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.08 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.07 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.02 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 96.99 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.98 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 96.98 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.97 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.95 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.88 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 96.83 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 96.8 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.79 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.79 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.78 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.78 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.77 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 96.76 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.76 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.75 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.75 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.73 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.72 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.72 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.71 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.7 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.64 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 96.64 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.62 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.61 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 96.61 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.58 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.57 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.56 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.55 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.55 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.52 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.48 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.48 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.41 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.27 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.26 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.26 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.26 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.24 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.22 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.22 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.18 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.15 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.15 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.11 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.11 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 96.11 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.11 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 96.06 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.05 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 96.04 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.0 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.0 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.97 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.87 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 95.86 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.84 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.84 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 95.77 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.77 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.75 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 95.74 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.67 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 95.66 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.6 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 95.57 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 95.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 95.53 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.49 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 95.35 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.34 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.34 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.31 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 95.23 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.11 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 95.07 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 95.03 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.0 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 94.99 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 94.98 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.97 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 94.79 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 94.71 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 94.65 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.65 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 94.63 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.5 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 94.48 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 94.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.41 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 94.37 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 94.34 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 94.25 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.11 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.05 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.92 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.86 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 93.6 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.55 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 93.53 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.42 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 93.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 93.13 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.11 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.79 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.76 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.69 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.62 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 92.4 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 92.27 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 92.05 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 91.94 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 91.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 91.85 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 91.8 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 91.77 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.62 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 91.56 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 91.44 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 91.24 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 90.97 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.81 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 90.55 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 90.52 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 90.41 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 90.23 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 90.03 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 89.84 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 89.79 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 89.63 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 89.53 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 89.5 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 89.04 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 88.76 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 88.49 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 88.31 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 88.25 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 88.22 | |
| PLN02366 | 308 | spermidine synthase | 87.77 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 87.69 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 87.44 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 87.24 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 87.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 86.82 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 86.81 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 86.15 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 85.96 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 85.5 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 85.39 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 84.89 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 84.86 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 84.66 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 84.63 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.5 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.43 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 83.49 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 83.03 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 82.7 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 82.29 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 82.02 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 81.74 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 81.68 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 81.45 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 80.52 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 80.16 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-143 Score=1187.51 Aligned_cols=497 Identities=56% Similarity=1.066 Sum_probs=472.8
Q ss_pred CcccCccHHHHHhcccccccccccccCCCC--CCCCCCCCCCCCCCCCCCcccccccccccCCCchhHHhhhcccccccc
Q 003776 275 DFIPCLDNLQAIKKLRSTKHYEHRERHCPE--EPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKV 352 (796)
Q Consensus 275 ~~~pc~d~~~~~~~~~~~~~~~~rerhCp~--~~~~Clvp~P~~yk~P~~WP~srd~iW~~Nvp~t~L~~~k~~qnW~~~ 352 (796)
|||||+|+.+++++++++.+|||||||||+ ++++||||+|++|+.||+||+||+++||.|+||+.|+++|+.|||+..
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999998899999999999998 799999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHH
Q 003776 353 TGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALE 432 (796)
Q Consensus 353 ~g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~e 432 (796)
.++++.||||+++|.+|+.+|++.|.++++.+.+++..+++||+|||+|+|+++|++++|++|.+++.+.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999987777888999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC-CCchHHHHHHHHHHHH
Q 003776 433 RGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY-QKLPEDVEIWNAMSQL 511 (796)
Q Consensus 433 rgl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~-~~l~El~~~~~~le~l 511 (796)
||+++++.+.+..+||||+++||+|||+.|+++|+.+...+|.|++|+|||||+|+++.++++ .+..++.+.|..++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999888889999999999999999999999999888999999999999999999999999 5667888999999999
Q ss_pred HHhhcceeehhhhhhccceeEEEEEecCChhhHhhhcc-CCCCcccCCCCCCcccccccccccccCcccccccCCCCCCC
Q 003776 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQ 590 (796)
Q Consensus 512 ~~~~~W~~v~~~~~~l~dvG~~L~rkgf~~~Cy~~r~~-~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~ 590 (796)
++.+||+.+....+ .+||||+.+++||.+|+. +.||+|+.+++++.+||.+|++||+++|......++.|+++
T Consensus 241 ~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 241 AKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999998875 899999999999999986 89999977789999999999999999998765667789999
Q ss_pred cccccccCCcccccccccccCCCchhhHHHHHHhhccccccee-eecccccccccccccccCccccceeeeccCCCeEEE
Q 003776 591 WPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSY-LNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVM 669 (796)
Q Consensus 591 WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~Wk~rV~~tY-~~~lgi~w~~iRnvmDm~~g~g~faA~l~~~~vwvm 669 (796)
||+||+++|+||.... +...+.+.|.+|+++|+++|.+|| +..+.+.|++||||||||||||||||||+++|||||
T Consensus 315 WP~RL~~~P~rl~~~~---~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVM 391 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGS---IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVM 391 (506)
T ss_pred ChhhhccCchhhhcCC---cCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEE
Confidence 9999999999997633 344589999999999999999766 344569999999999999999999999999999999
Q ss_pred EeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccHHH
Q 003776 670 NVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVET 749 (796)
Q Consensus 670 nv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~ 749 (796)
||||+.++|||++||||||||+||||||+|||||||||||||++|||.+.+||.|.+|||||||||||||++||||+.++
T Consensus 392 NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 392 NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeeccC----CceEEEEEe
Q 003776 750 INELESMVKGMQWEVRMTYSKD----KEGLLCVEK 780 (796)
Q Consensus 750 ~~~~~~~~~~l~W~~~~~~~~~----~e~~l~~~K 780 (796)
+.+|+.|+++|||++++.++++ +|+||||||
T Consensus 472 l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999998876 699999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=329.04 Aligned_cols=194 Identities=21% Similarity=0.344 Sum_probs=151.1
Q ss_pred ccccccccCcccccccCCCCCCCcccccccCCcccccccccccCCCchhhHHHHHHhhcc------ccc-------c---
Q 003776 568 PLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKR------VVS-------K--- 631 (796)
Q Consensus 568 ~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~Wk~------rV~-------~--- 631 (796)
....|+.++|. |+..|.+||+......+.... + +...-.+..++|.+ ++| +
T Consensus 33 ~~~~CLVp~P~-----gYk~P~~WP~SRd~iW~~Nvp-----h---~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~ 99 (506)
T PF03141_consen 33 ERLRCLVPPPK-----GYKTPIPWPKSRDYIWYANVP-----H---TKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGAD 99 (506)
T ss_pred CCCccccCCCc-----cCCCCCCCCcccceeeecccC-----c---hHHhhhcccccceeecCCEEEeCCCCccccCCHH
Confidence 45689999997 999999999966555432211 1 23444566677865 222 1
Q ss_pred eeeeccc----c--cccccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc---cccccccccccCC
Q 003776 632 SYLNGMG----I--NWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL---FGIYHDWCESFST 701 (796)
Q Consensus 632 tY~~~lg----i--~w~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~~ce~f~t 701 (796)
.|+..+. . .-+.||++||+|||+|||||+|++++|.+|+++|.+.| +|+||++|||+ ||++.+...|||
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp- 178 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFP- 178 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCC-
Confidence 2543332 2 33789999999999999999999999999999999999 99999999996 555555555554
Q ss_pred CCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe----------ccHHHHHHHHHHHhcCCceEEEeeccC
Q 003776 702 YPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR----------DDVETINELESMVKGMQWEVRMTYSKD 771 (796)
Q Consensus 702 yprtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r----------d~~~~~~~~~~~~~~l~W~~~~~~~~~ 771 (796)
.|+||||||++++..|...- .++|+|||||||||||||++ |..+++.+|+.++++|||+..+.
T Consensus 179 -~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 179 -SNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred -ccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 69999999666666665443 36899999999999999996 34679999999999999999988
Q ss_pred CceEEEEEecc
Q 003776 772 KEGLLCVEKSM 782 (796)
Q Consensus 772 ~e~~l~~~K~~ 782 (796)
+..++||||+.
T Consensus 252 ~~~~aIwqKp~ 262 (506)
T PF03141_consen 252 KGDTAIWQKPT 262 (506)
T ss_pred eCCEEEEeccC
Confidence 66799999985
|
; GO: 0008168 methyltransferase activity |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-22 Score=202.66 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=180.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+....++|||||.|.+.+.|... .++.+|.|..|+..++ -++..++....++.|.+.|+|.+++||+|+++++ +
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-l 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-L 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhh-h
Confidence 34668999999999999999886 6789999998875553 3334566678889999999999999999999986 9
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhccceeEEEEEecCChhhH
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECY 544 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG~~L~rkgf~~~Cy 544 (796)
||.++++..+.++...|||+|.|+.+ .++.++|.|++-..+-++....++..+++.+|. .++++|.++-|+||+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GGiSphiSPf~-qvrDiG~LL~rAGF~---- 221 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGGISPHISPFT-QVRDIGNLLTRAGFS---- 221 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccCCCCCcChhh-hhhhhhhHHhhcCcc----
Confidence 99999999999999999999999966 889999999999887777777788899999999 699999999999999
Q ss_pred hhhccCCCCcccCCCCCCcccccccccccccCcccccccCCCCCCCcccccccCCcccccccccccCCCchhhHHHHHHh
Q 003776 545 EKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEH 624 (796)
Q Consensus 545 ~~r~~~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~ 624 (796)
.+. .|.|.+.+-|+.|+.+|.+|++|+|+|.+.. +..++.|.+..+..+-|+.
T Consensus 222 -------m~t--vDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~~------------------Rn~~l~Ret~vAaaAiY~s 274 (325)
T KOG2940|consen 222 -------MLT--VDTDEIVVGYPRMFELMEDLQGMGESNAALN------------------RNAILNRETMVAAAAIYQS 274 (325)
T ss_pred -------cce--ecccceeecCchHHHHHHHHHhhcccchhhc------------------cCccccHHHHHHHHHHHHH
Confidence 444 4788899999999999999999988876521 1122233344444444443
Q ss_pred ----hcccccceeeecccccccc
Q 003776 625 ----WKRVVSKSYLNGMGINWST 643 (796)
Q Consensus 625 ----Wk~rV~~tY~~~lgi~w~~ 643 (796)
=-..+|++|.++|.++|+-
T Consensus 275 mya~e~~~iPATfqiiy~iGWk~ 297 (325)
T KOG2940|consen 275 MYATEDGTIPATFQIIYMIGWKP 297 (325)
T ss_pred HhcCCCCCcceeEEEEEEEccCc
Confidence 2237999999999999964
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=186.80 Aligned_cols=217 Identities=20% Similarity=0.272 Sum_probs=150.2
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
.+.+.+.++. ....+|||+|||+|.++..|+.. .|+++|+++.++..++. +.....+...+.+.+|+++
T Consensus 31 a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 31 ADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcCCC
Confidence 3445555543 34679999999999999988764 89999999988766652 2223356778888999999
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhcccee
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG 531 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG 531 (796)
++||+|+++.+ ++|..++..+|.++.|+|||||+|+++ .++..+++++...|..+........+........
T Consensus 102 ~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~------ 173 (251)
T PRK10258 102 ATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFT-TLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQ------ 173 (251)
T ss_pred CcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEE-eCCCCchHHHHHHHHHhccCCccccCCCHHHHHH------
Confidence 99999999875 889889999999999999999999998 6777888998888765432211111212222221
Q ss_pred EEEEEecCChhhHhhhccCCCCcccCCCCCCcccccccccccccCcccccccCCCCCCCcccccccCCcccccccccccC
Q 003776 532 IAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYG 611 (796)
Q Consensus 532 ~~L~rkgf~~~Cy~~r~~~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~g 611 (796)
.+.+.++. . +.+..+.+|.+..++|+.|+.+ |+... ...+..++++
T Consensus 174 -~l~~~~~~--------------~--~~~~~~~~f~~~~~~l~~lk~~----G~~~~-------------~~~~~~~~~~ 219 (251)
T PRK10258 174 -ALNGWRYQ--------------H--HIQPITLWFDDALSAMRSLKGI----GATHL-------------HEGRDPRILT 219 (251)
T ss_pred -HHHhCCce--------------e--eeeEEEEECCCHHHHHHHHHHh----CCCCC-------------CCCCCCCCCc
Confidence 11111111 1 3355778999999999999998 54210 1112345566
Q ss_pred CCchhhHHHHHHhhcccccceeeecccccc
Q 003776 612 KSAPEDFTADYEHWKRVVSKSYLNGMGINW 641 (796)
Q Consensus 612 r~t~e~F~eD~e~Wk~rV~~tY~~~lgi~w 641 (796)
|.....|.+.|..=..+++.||.++|++.+
T Consensus 220 ~~~~~~~~~~~~~~~g~~~lty~v~~~~~~ 249 (251)
T PRK10258 220 RSQLQRLQLAWPQQQGRYPLTYHLFLGVIE 249 (251)
T ss_pred HHHHHHHHHhccccCCCcceEEEEEEEEEE
Confidence 666677776654423379999999887543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-18 Score=192.69 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=82.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC--CCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e--~LPfp 450 (796)
..+.+.++. .++.+|||||||+|.++..|+++ .|+++|+++.++..+... ......+.+...+.. .+|++
T Consensus 27 ~~il~~l~~----~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLPP----YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcCc----cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccCCC
Confidence 344555543 24679999999999999999875 799999999998765421 111223456666653 57888
Q ss_pred CCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++||+|+|+.+ +++..+ ...+|.+++|+|||||+|++...
T Consensus 101 ~~~fD~I~~~~~-l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWL-LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhh-HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999999875 554443 47899999999999999998643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-16 Score=160.55 Aligned_cols=115 Identities=26% Similarity=0.327 Sum_probs=94.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
.|-+.+...+.. +++.+|||||||||-++..+++. .|+++|+++.|+..++.+. ...++. +.+.+++++.
T Consensus 38 ~Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~-~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL-KKKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh-hccCccceEEEEechhh
Confidence 344444444432 26899999999999999999875 7999999999999998444 443333 6788899999
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|||++++||+|.++++ +++..|...+|+|++|||||||.+++...
T Consensus 113 LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999986 88888999999999999999999887644
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=158.28 Aligned_cols=104 Identities=29% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||+|||||.++..|+++ .|+++|+++.|+..++.+........+.+.+++++.|||++++||+|+|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 45789999999999999988763 7999999999999998555443333678888999999999999999999985
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++...|+..+|+|++|||||||.|++...
T Consensus 126 -lrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 -LRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -HHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 77777999999999999999999997644
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-15 Score=129.66 Aligned_cols=92 Identities=28% Similarity=0.438 Sum_probs=72.9
Q ss_pred EEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccch
Q 003776 394 LDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG 470 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~ 470 (796)
||+|||+|.++..|+++ .|+++|+++.++..++... .. ....+...+...+||++++||+|++..+ ++|..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KN--EGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TT--STEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cc--cCchheeehHHhCccccccccccccccc-eeeccCH
Confidence 89999999999999876 7999999998776665322 11 2234788889999999999999999874 6656789
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 003776 471 GKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 471 ~~~L~Ei~RVLKPGG~fv~ 489 (796)
..+|+++.|+|||||+|+|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=150.99 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=108.7
Q ss_pred cccccCCCchhHHhhhcccccccccCcccccCCCCcccccc-------------HHHHHHHHHHhCcccccCCCCCEEEE
Q 003776 329 KIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNG-------------ALHYIDFIQESVPDVAWGKRTRVVLD 395 (796)
Q Consensus 329 ~iW~~Nvp~t~L~~~k~~qnW~~~~g~~~~Fpgggt~F~~~-------------a~~yid~L~e~Lp~i~~~~~~~~VLD 395 (796)
..|.+...|.......+|.|..........-||+...+... .......|.+.++ ....+|||
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~-----~~~~~vLD 91 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLD-----EKATALLD 91 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcC-----CCCCeEEE
Confidence 34777778888788888888776555544445544322221 1111122222222 24578999
Q ss_pred ECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 396 VGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 396 IGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
+|||+|.++..|+.. .|+|+|+++.++..|. ++...+.+.+++...+||++++||+|++.++
T Consensus 92 iGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------ 160 (272)
T PRK11088 92 IGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIYA------ 160 (272)
T ss_pred ECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEecC------
Confidence 999999999988753 4799999998876654 3444567788888899999999999998762
Q ss_pred chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHH
Q 003776 469 EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~ 503 (796)
+..+.+++|+|||||+|++. .+...++.+++.
T Consensus 161 --~~~~~e~~rvLkpgG~li~~-~p~~~~l~el~~ 192 (272)
T PRK11088 161 --PCKAEELARVVKPGGIVITV-TPGPRHLFELKG 192 (272)
T ss_pred --CCCHHHHHhhccCCCEEEEE-eCCCcchHHHHH
Confidence 23468999999999999987 566666666544
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=145.15 Aligned_cols=104 Identities=23% Similarity=0.272 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHH--HcC-CCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFAL--ERG-IPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~--erg-l~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|+++ .|+|+|+++.|+..|+.+... ... ..+.+...++..+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 35789999999999999888753 699999999999888744321 112 2456778888999999999999999
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ +++..++..+|.+++|+|||||+|++...
T Consensus 152 ~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 875 77777999999999999999999998744
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=148.29 Aligned_cols=124 Identities=23% Similarity=0.336 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHHHhCccc-ccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEE
Q 003776 366 FKNGALHYIDFIQESVPDV-AWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAIS 439 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i-~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~ 439 (796)
+.......++.+.+.+..- ....++.+|||||||+|.++..|+++ .|+|+|+++.++..++ +.+...++ .+.+
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~ 172 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEE
Confidence 3333344444455444310 00135679999999999999999874 8999999999988886 44445554 3677
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+.|...+||++++||+|++..+ +++..+...+|.+++|+|||||+|++..
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~-~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMES-GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCc-hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 88888999999999999999875 5555688999999999999999999874
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=142.04 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
.....+...+.. .++.+|||||||+|.++..|+.. .|+++|+++.++..++..... ...+.+...+...+|
T Consensus 39 ~~~~~~l~~l~l----~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 39 EATTKILSDIEL----NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD 112 (263)
T ss_pred HHHHHHHHhCCC----CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC
Confidence 334555555543 45789999999999999888753 799999999998877644322 234566777878889
Q ss_pred CCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++||+|++..+++|+.. ++..+|++++|+|||||+|+++..
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999999765344332 778999999999999999998754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=133.53 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=89.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~ 446 (796)
+...+.+.+.. .++.+|||+|||+|.++..|++. .|+++|+++.++..++...+ ..++ .+.+...+...
T Consensus 33 ~~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 33 WRKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhc
Confidence 33445555542 35789999999999999888753 79999999999888874443 3344 35667778888
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++++||+|++... +++..++..+|.++.|+|||||+|++..+
T Consensus 108 ~~~~~~~fD~V~~~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFG-LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEecc-cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8898899999999874 77777889999999999999999997643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=137.84 Aligned_cols=110 Identities=25% Similarity=0.396 Sum_probs=87.0
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
..+|||||||+|.++..|+.. .++++|+++.++..++.... ..+.+...+...+|+++++||+|+++.+ ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-LQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-hh
Confidence 578999999999999988874 67999999988766653322 2346677888888988899999999875 77
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
|..++..+|.++.++|||||+|+++ .+....+.+....+
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~-~~~~~~~~~~~~~~ 148 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSF 148 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEE-eCCccCHHHHHHHH
Confidence 7779999999999999999999987 45555555544433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.9e-13 Score=137.52 Aligned_cols=101 Identities=28% Similarity=0.249 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----------CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----------GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIV 453 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----------~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~S 453 (796)
..+.++||++||||-++..+.+. +|+++|++|.||+.+. +.|.++++. ..+..+|++.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45789999999999998888752 7999999999999997 555556543 46777799999999999
Q ss_pred eeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 454 FDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
||+..+++. +....++.++|+|++|||||||+|.+-
T Consensus 178 ~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 178 FDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred ceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999999886 777779999999999999999999965
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=132.66 Aligned_cols=109 Identities=28% Similarity=0.505 Sum_probs=82.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
+.+.+.+.++. ..+..+|||||||+|.++..|... .|+++|+++.++.. ........+....+++
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc
Confidence 34444444432 145789999999999999999876 89999999977655 2222333333455567
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+++||+|+|+.+ ++|..++..+|.++.++|||||+++++.+...
T Consensus 76 ~~~fD~i~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDV-LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESS-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHH-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999974 77777999999999999999999999865443
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=139.18 Aligned_cols=111 Identities=23% Similarity=0.216 Sum_probs=84.8
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~e~LPfp 450 (796)
+.+...++.+ .+.+|||||||+|.++..|+.. .|+|+|+++.++..+....... ....+.+...+.+.+|+
T Consensus 112 ~~l~~~l~~l----~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPL----KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCC----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 4555555432 3689999999999999999875 5999999998876543221111 12346677778889998
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++||+|+|... +++..++..+|++++++|||||.|++..
T Consensus 187 ~~~FD~V~s~~v-l~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGV-LYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECCh-hhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999863 5555689999999999999999999874
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=138.16 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++.+|||||||+|.++..|+.+ .|+|+|+++.|+..++ +++ +.+...+...++ ++++||+|+|+.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~- 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERG--VDARTGDVRDWK-PKPDTDVVVSNAA- 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcC--CcEEEcChhhCC-CCCCceEEEEehh-
Confidence 35789999999999999999864 7999999998886664 334 355667777664 5679999999875
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+||..++..+|++++++|||||+|++..
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 7887899999999999999999999874
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=139.47 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+.+|||||||+|.++..|+.. .|+|+|+++.++..|+.. +...+. .+.+...+++.+|+++++||+|+|..+ +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v-L 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV-I 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-H
Confidence 4679999999999999999875 799999999999888743 333222 456777777889988889999999873 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..++..+|.++.|+|||||.|+++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5555999999999999999999999843
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=135.32 Aligned_cols=101 Identities=29% Similarity=0.356 Sum_probs=88.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
.+.+|||+|||-|.++..|++. .|+|+|+++.++..|+ ..|.+.++.+.+.....++|-...++||+|+|.. +..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE--VlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME--VLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh--HHH
Confidence 4789999999999999999985 8999999999999998 6778888887777777778877768999999998 445
Q ss_pred c-cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 467 H-IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~-~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
| +++..+++.+.+.|||||.+++++.
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 5 5999999999999999999999843
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=123.23 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss 460 (796)
...+|||+|||+|.++..|++ .+++|+|+++.++..++ +.+.+.+++ +.+.+.+...++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467999999999999999993 37999999999999988 455566665 778888887787 76 899999998
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.. +++..++..+|.++.++|+|||.+++...
T Consensus 81 ~~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GV-LHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ST-GGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cc-hhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 64 66666888999999999999999998744
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=128.13 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=77.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||+|||+|.++.+|+++ .|+++|+++.++..++ +.+...++.+...+.+...++++ ++||+|+++.+ +++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cccC
Confidence 579999999999999999876 8999999999998887 44556677666666666556665 57999999874 4433
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEE
Q 003776 468 I--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. +...++.+++|+|||||+|++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 4578999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=142.48 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..|+.. +......+.+.+.+...+|+++++||+|+|..+ +
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35679999999999998888764 799999999998877633 333334567778888888998899999999875 6
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|..++..+|.+++|+|||||.|++...
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6667899999999999999999998854
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=128.06 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..|+++ .|+++|+++.++..++. .+...++. +.+.+.+...++++ ++||+|+|+.+ ++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-hh
Confidence 3579999999999999999986 79999999999988874 44445554 55666777677765 67999999874 55
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.. +...+|.++.|+|||||++++.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 5689999999999999996543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=115.13 Aligned_cols=101 Identities=24% Similarity=0.293 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhh--C--CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCC-CCCCCCCCceeEEEEcC-
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGT-ERLPFPGIVFDAVHCAR- 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~--~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~-e~LPfpd~SFDlVvss~- 461 (796)
++.+|||||||+|.++..|++ . +|+++|+++.++..++...... ....+.+...+. ....+. ..||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 367999999999999999988 3 8999999999999998555332 234567777777 334443 4699999987
Q ss_pred CCcccc---cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWH---IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~---~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ +++. .+...+|..+.+.|+|||+|++..
T Consensus 80 ~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 2222 255789999999999999999874
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=132.02 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||||||+|..+..++.. .|+++|+++.++..++.. +...++ .+.+...+.+.+|+++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35789999999999876655542 599999999999888743 344454 35566678888999989999999975
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKL 498 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l 498 (796)
.+++..+...+|.+++|+|||||+|+++.......+
T Consensus 155 -v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~ 190 (272)
T PRK11873 155 -VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL 190 (272)
T ss_pred -cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC
Confidence 467667889999999999999999999765444433
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=129.90 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+.+|||||||||.++..|+++ .|+|+|+++.|+..++.. . ...+.+++.+||++++||+|+++++ +++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-----~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-----D---DKVVGSFEALPFRDKSFDVVMSSFA-LHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-----c---ceEEechhhCCCCCCCEEEEEecCh-hhc
Confidence 679999999999999998875 799999999998877532 1 2456778899999999999999985 777
Q ss_pred ccchHHHHHHHHhhcCCCc
Q 003776 467 HIEGGKLLLELNRVLRPGG 485 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG 485 (796)
..++..+|+|++|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 7799999999999999953
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=126.87 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
++.+|||||||+|.++..|+++ +|+++|+++.|+..++....... ...+.+...+...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 4679999999999999888752 69999999999988874443221 23456777888888876 489999987
Q ss_pred CCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 CRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 ~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+ +||.. +...+|.+++|+|||||.|+++.+..
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 5 66554 45789999999999999999985443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-12 Score=132.61 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC-CCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL-PFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L-Pfpd~SFDlVvss~~~ 463 (796)
.+.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++ .+.+...+...+ ++++++||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v- 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV- 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH-
Confidence 4679999999999999999886 79999999999988874 4444554 245666666655 366789999999874
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++|..++..+|.++.|+|||||+|++.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 666668999999999999999999876
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=130.53 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=83.0
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
...+...++. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++. +...+.+...+...++
T Consensus 20 ~~~ll~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~-----~~~~~~~~~~d~~~~~- 89 (258)
T PRK01683 20 ARDLLARVPL----ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS-----RLPDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHhhCCC----cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-----hCCCCeEEECchhccC-
Confidence 3444444442 35789999999999999988863 79999999988866653 2223456667766654
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.++||+|+++.+ ++|..+...+|.++.++|||||.|++..
T Consensus 90 ~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4568999999975 7888899999999999999999999874
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=134.06 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHH-HcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFAL-ERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~-ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+++|||||||+|.++..++.. .|+|+|+++.|+..+...... .....+.+...+.+.+|.. .+||+|+|+.+ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv-L 198 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV-L 198 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch-h
Confidence 4789999999999998888764 599999999888654321111 1122345566677788865 48999999874 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|..++..+|.+++|+|||||.|++...
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 5556899999999999999999998743
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=127.87 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhh------CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD------RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~------~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
++.+|||||||+|.++..|++ ..|+++|+++.|+..++.+.+. .+. .+.+...+...+|++ .||+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 467999999999999887765 2799999999999999855543 333 456677777777775 49999998
Q ss_pred CCCccccc--chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 461 RCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 461 ~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
++ +|+.. +...+|.+++|+|||||.|+++...
T Consensus 133 ~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 133 FT-LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 74 55443 3468999999999999999998543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=123.93 Aligned_cols=101 Identities=29% Similarity=0.324 Sum_probs=85.0
Q ss_pred CEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeE-EEEcCCCCCC-CCCCceeEEEEcCCCcc
Q 003776 391 RVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLP-FPGIVFDAVHCARCRVP 465 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v~d~e~LP-fpd~SFDlVvss~~~l~ 465 (796)
..||++|||||..-.++.- ..|+.+|.++.|-..+....+.++..... +.+++.++|| ++++++|.|+|.++ +-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Ee
Confidence 4679999999987777653 38999999999998888777777666665 7778889999 89999999999885 44
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
-+.++...|.++.|+|||||+++|-.+
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 456999999999999999999998744
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=121.97 Aligned_cols=115 Identities=30% Similarity=0.323 Sum_probs=88.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.|.+.+.+.+.. .++.+|||+|||+|.++..++.+ .++++|+++.++..++.. ....+..+.+...+...
T Consensus 6 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 6 RYRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEeccccc
Confidence 444555555543 45789999999999999888753 699999999888777643 22223445667777788
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++++||+|++..+ +++..++..+|.++.++|||||++++..+
T Consensus 81 ~~~~~~~~D~v~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRV-LQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEech-hhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 8888899999999875 56566899999999999999999998743
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-11 Score=119.32 Aligned_cols=116 Identities=23% Similarity=0.138 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||||||+|.++..++. ..|+++|+++.++..++ +.+...++. +.+...+...++. .++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 378999999999998888875 28999999999998887 445555554 5667777777776 67999999964
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceee
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v 520 (796)
+ .++..++.+++++|||||+|++..... . ...+..++...+|...
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~~~~--~-------~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALKGRD--P-------EEEIAELPKALGGKVE 165 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEeCCC--h-------HHHHHHHHHhcCceEe
Confidence 2 357889999999999999999874321 1 1234455555566643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-12 Score=114.40 Aligned_cols=92 Identities=29% Similarity=0.427 Sum_probs=73.1
Q ss_pred EEEECCCCchhHHHHhh-------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 393 VLDVGCGVASFGGFLFD-------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 393 VLDIGCGtG~~a~~La~-------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
|||+|||+|..+..|.. ..++++|+++.++..++.. ....++++.+.+.|...+++..++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999888874 3799999999999888744 344677889999999999998899999999664344
Q ss_pred ccc--chHHHHHHHHhhcCCCc
Q 003776 466 WHI--EGGKLLLELNRVLRPGG 485 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG 485 (796)
+.. +...+|+++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 432 45799999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-11 Score=130.00 Aligned_cols=124 Identities=21% Similarity=0.360 Sum_probs=87.6
Q ss_pred ccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcC
Q 003776 358 TFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG 434 (796)
Q Consensus 358 ~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~erg 434 (796)
.|+.+...+.......++.+.+.+.. +++.+|||||||.|.++.+++++ +|+|+.+|+.....++ +.+.+.|
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~l----~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~g 109 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLGL----KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAG 109 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCST
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcC
Confidence 35666666666666777788777764 57899999999999999999986 8999999997776665 4555667
Q ss_pred CC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEe
Q 003776 435 IP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 435 l~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. +.+...|..+++. +||.|+|.. +..|. +...+|..+.|+|||||++++..
T Consensus 110 l~~~v~v~~~D~~~~~~---~fD~IvSi~--~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 LEDRVEVRLQDYRDLPG---KFDRIVSIE--MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSSTEEEEES-GGG------S-SEEEEES--EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCceEEEEeeccccCC---CCCEEEEEe--chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 65 5666677776664 899999987 44554 56899999999999999999763
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-12 Score=115.15 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=57.7
Q ss_pred EEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcCCCcccc
Q 003776 394 LDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~~~l~w~ 467 (796)
||||||+|.++..|+.. +++++|+|+.++..++.++.................+. ...++||+|+++.. ++|.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhhh
Confidence 89999999999888764 89999999999977765554433333333333332221 22269999999864 7777
Q ss_pred cchHHHHHHHHhhcCCCcEE
Q 003776 468 IEGGKLLLELNRVLRPGGFF 487 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~f 487 (796)
.++..+|+.++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 79999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=132.25 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. +.+...+... +++.+.||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999999888753 79999999999988874 44445543 4445555321 2345689999997644
Q ss_pred ccccc---------------------ch----HHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHI---------------------EG----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~---------------------d~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.... +. ..++.++.++|+|||.|++.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 43111 01 23567788999999999986
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-11 Score=129.30 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..+++. .|+++|+++.|+..++.... .. .+.+...+.+.+|+++++||+|+++.. +
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~--~i~~i~gD~e~lp~~~~sFDvVIs~~~-L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LK--ECKIIEGDAEDLPFPTDYADRYVSAGS-I 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-cc--CCeEEeccHHhCCCCCCceeEEEEcCh-h
Confidence 4679999999999988887653 79999999999888774432 12 245677788889999999999999864 6
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..++..+|++++|+|||||.|++..+
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6666889999999999999999987643
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=123.03 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC-CCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT-ERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~-e~LP--fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+.. .|+++|+++.++..++.... ..++ .+.+.+.++ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999999988763 79999999999988874443 3344 356777777 6776 778899999998
Q ss_pred CCCccccc--------chHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHI--------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++ .+|+. ....+|.+++++|||||+|+++
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 65 55543 1468899999999999999987
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-11 Score=125.84 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=105.3
Q ss_pred cccccccccCcccc--cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCCh
Q 003776 345 GHQNWVKVTGEYLT--FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAP 419 (796)
Q Consensus 345 ~~qnW~~~~g~~~~--Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp 419 (796)
.+.-|...+..|.- |+.....+......-++.+.+.+.. +++.+|||||||.|.++.+++++ +|+|+++|+
T Consensus 30 fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~ 105 (283)
T COG2230 30 FYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE 105 (283)
T ss_pred HHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH
Confidence 34455555444442 5565556666666667778777764 67999999999999999999986 799999999
Q ss_pred hhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 420 KDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 420 ~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+...++ +.++++|+. +.+...|...+. +.||-|+|.. +..|. +-+.+|..++++|+|||.+++-+...
T Consensus 106 ~Q~~~~~-~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg--mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 106 EQLAYAE-KRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG--MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHHHHH-HHHHHcCCCcccEEEeccccccc---cccceeeehh--hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 9888887 445567776 455556655554 4499999987 45554 46899999999999999999875444
Q ss_pred CC
Q 003776 495 YQ 496 (796)
Q Consensus 495 ~~ 496 (796)
+.
T Consensus 180 ~~ 181 (283)
T COG2230 180 PD 181 (283)
T ss_pred CC
Confidence 44
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-11 Score=126.44 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||||||+|.++.+|+.+ .|+++|+++.++..++ +.+...++.+.....+....++ +++||+|+++.+ +++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhhC
Confidence 459999999999999999875 8999999999998876 5566677776667777655555 578999999864 4433
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEE
Q 003776 468 I--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. +...+|.++.|+|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4578999999999999997654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=116.61 Aligned_cols=108 Identities=20% Similarity=0.364 Sum_probs=82.0
Q ss_pred HHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCce
Q 003776 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVF 454 (796)
Q Consensus 377 L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SF 454 (796)
+.+.++.+ ++.++||||||.|+.+.+|+++ .|+++|+++..+...+ +.|.+.++++...+.|.....++ +.|
T Consensus 22 v~~a~~~~----~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLL----KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhc----CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCc
Confidence 44555542 3679999999999999999997 8999999998887765 78888999988888887777765 679
Q ss_pred eEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 455 DAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 455 DlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|+|++...+.+.+. ..+.++..|...|+|||++++.
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 99998652122222 3468899999999999998874
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=123.10 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM 442 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~ 442 (796)
|..+.......+.+.+..+. .++.+|||+|||+|.++..++.. .|+++|+++.++..++.. +...++.......
T Consensus 138 FgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~~ 214 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQVK 214 (288)
T ss_pred ccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEEE
Confidence 44443344444444333221 24689999999999998887764 799999999999888744 4445554222211
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+++..+.||+|+++. +. .....++.++.++|||||+|+++..
T Consensus 215 ~~~~~~~~~~~fDlVvan~--~~--~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 215 LIYLEQPIEGKADVIVANI--LA--EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecccccccCCCceEEEEec--CH--HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1112344567899999975 21 1346789999999999999999843
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=117.24 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC---CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP---FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP---fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+.+ +|+|+|+++.++..++.. +...++. +.+...++..++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~-~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNK-ANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 3569999999999999988875 899999999999888744 3444553 556666665443 566799999998
Q ss_pred CCCcccccch--------HHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. .+|+... ..+|.++.|+|||||.|++.+
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 75 6665421 578999999999999999873
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=134.99 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
++.+|||||||+|.++..|+.+ .|+|+|+++.|+..++.+. ...+....+..++...+| |++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3679999999999998888753 8999999999998887443 334555566777877787 88899999999864
Q ss_pred Ccccc-------------cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWH-------------IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~-------------~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+. .++..+|++++|+|||||+|++...
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432 2457999999999999999999754
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=101.36 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++++ .|+++|+++.++..++.... ..+.. ..+...+... ++....+||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4579999999999999999874 69999999999888874433 34443 4445455433 4444468999999753
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. ....++.++.|+|||||+|++.
T Consensus 98 -~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 -GG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred -ch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 21 3468999999999999999986
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=119.48 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
..+...+.+.++. ...++.+|||+|||+|.++..|+.. .|+|+|+++.++..++.+.. ..+. .+.+.+.+...
T Consensus 39 ~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 39 AAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhh
Confidence 3344445555542 0134789999999999999999875 79999999999988875443 3333 45677777766
Q ss_pred CCCCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++ ++||+|++...+.++.. +...++.++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 78999999764223322 4578899999999988777654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=117.05 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=77.2
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
+|||||||+|.++..+++. .|+++|+++.++..++... ...++. +.+...+....|++ ++||+|++... ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 7999999999999888763 6999999998888777443 344443 45666676566665 58999999764 55
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..+...+|.++.++|||||+|++...
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 555889999999999999999998754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=120.94 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCch----hHHHHhh---------CCeEEEeCChhhHHHHHHHHH---HHcCC-----------------
Q 003776 389 RTRVVLDVGCGVAS----FGGFLFD---------RGVLTMSFAPKDEHEAQVQFA---LERGI----------------- 435 (796)
Q Consensus 389 ~~~~VLDIGCGtG~----~a~~La~---------~~V~gvDiSp~dl~~A~~q~A---~ergl----------------- 435 (796)
.+.+|||+|||+|. ++..|++ ..|+|+|+++.++..|+...- .-+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999995 4544443 269999999999988874310 00111
Q ss_pred -------CeEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 436 -------PAISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 436 -------~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+.+.+.+...++++.+.||+|+|..+ +++.. +...+|.+++++|+|||+|++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 245667777777777889999999764 44443 3458999999999999999986
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-09 Score=109.18 Aligned_cols=103 Identities=26% Similarity=0.266 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
++.+|||+|||+|.++..++. ..++++|+++.++..++....... ...+.+...+...++++.++||+|+++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 467999999999999888865 379999999988887774443211 22356677777778887889999999874
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..++..+|.++.++|+|||++++...
T Consensus 131 -l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 -LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 66666889999999999999999987644
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=115.70 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCce
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SF 454 (796)
+++.+|||||||+|.++..|+++ .|+++|+++ +. ....+.++.+|....+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 35779999999999999988764 699999987 21 1123466777776643 667899
Q ss_pred eEEEEcCCCcccccch-----------HHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARCRVPWHIEG-----------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~~l~w~~d~-----------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+|+|+.+ .+|+.++ ..+|.++.|+|||||.|++..
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999864 5554321 358899999999999999873
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=123.88 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=82.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
-...+.+.++. ....+|||||||+|.++..++++ .|+++|+++.++..++... ...++...+...+...
T Consensus 184 gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~-- 256 (342)
T PRK09489 184 GSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS-- 256 (342)
T ss_pred HHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--
Confidence 34566666664 22458999999999999998864 6999999999998887444 4455665555555422
Q ss_pred CCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...+.||+|+|+.. +|+.. ....+|.++.++|||||.|++...
T Consensus 257 ~~~~~fDlIvsNPP-FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 257 DIKGRFDMIISNPP-FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCCccEEEECCC-ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 23578999999875 55422 347889999999999999998754
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=117.06 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=104.0
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
.|..+++. ...++|.|||||+|..+..|+++ .|+|+|.|+.|+..|+ .+.+...+..+|....- |.
T Consensus 21 dLla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa-----~rlp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 21 DLLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA-----QRLPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH-----HhCCCCceecccHhhcC-CC
Confidence 35556664 45789999999999999999986 8999999999886664 56777888888876664 45
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhcccee
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG 531 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG 531 (796)
..+|+++++. .+||.+|-..+|..+...|.|||.|.+.++...+. + ....|.+.+... ++.+.+.+.|
T Consensus 91 ~~~dllfaNA-vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-p----sH~~mr~~A~~~------p~~~~l~~~~ 158 (257)
T COG4106 91 QPTDLLFANA-VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-P----SHRLMRETADEA------PFAQELGGRG 158 (257)
T ss_pred Cccchhhhhh-hhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-h----hHHHHHHHHhcC------chhhhhCccc
Confidence 6799999986 59999999999999999999999999885433332 1 123344444422 3444555555
Q ss_pred EEEEEecCC
Q 003776 532 IAVYRKPTS 540 (796)
Q Consensus 532 ~~L~rkgf~ 540 (796)
+ .|++.-
T Consensus 159 ~--~r~~v~ 165 (257)
T COG4106 159 L--TRAPLP 165 (257)
T ss_pred c--ccCCCC
Confidence 5 365554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=110.16 Aligned_cols=101 Identities=28% Similarity=0.299 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||+|||+|.++..++.. .++++|+++.++..++.... ....+.+...+...++++.++||+|+++..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~- 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFG- 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeee-
Confidence 5789999999999999888763 69999999988776654433 222356667777788888889999999864
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..++..+|+++.++|+|||+|++...
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 66666889999999999999999998643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-10 Score=111.71 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=79.5
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP 448 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP 448 (796)
...|.+.++.. ...+|||+|||+|.++..|+.+ .|+++|+++..+..++ +.+...++. +.+...|... +
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~ 93 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-A 93 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-T
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-c
Confidence 34556655541 4779999999999999999875 5999999999888776 455556666 5566666422 2
Q ss_pred CCCCceeEEEEcCCCcccccc-----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 449 FPGIVFDAVHCARCRVPWHIE-----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d-----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++...||+|+|+.. ++...+ ...++.+..+.|||||.|++..
T Consensus 94 ~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 33689999999874 332222 3678899999999999997753
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=107.40 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=74.2
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||+|||+|.++..++.+ .|+++|+++.++..++.... ..++.+.+...+....+ .++||+|+++..+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 568999999999999999876 69999999999888874443 44555566666654433 35899999986433221
Q ss_pred cc--------------------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 468 IE--------------------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 468 ~d--------------------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. ...+|.++.|+|||||.|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 10 2467999999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=123.05 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT 444 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~ 444 (796)
......++.+.+.+.. .++.+|||||||+|.++..++++ .|+++|+++.++..++.+. .++.+.+...+.
T Consensus 150 ~Aq~~k~~~l~~~l~l----~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQL----KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECch
Confidence 3334445566666543 45789999999999999988864 7999999999887776433 244455566665
Q ss_pred CCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+ +++||+|++... +++.. +...+|.++.|+|||||+|++..
T Consensus 223 ~~l---~~~fD~Ivs~~~-~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 223 RDL---NGQFDRIVSVGM-FEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhc---CCCCCEEEEeCc-hhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 554 478999999863 33322 45789999999999999999874
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=116.89 Aligned_cols=109 Identities=26% Similarity=0.368 Sum_probs=81.9
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc-CCCeE-EEE-cCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER-GIPAI-SAV-MGTERLP 448 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er-gl~~~-~~v-~d~e~LP 448 (796)
+++..+++.+ .+++|||||||.|+++-.++.+ .|+|+|.++..... -+++++. |.... +.. .+.+.||
T Consensus 105 ~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q--F~~i~~~lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ--FEAIKHFLGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH--HHHHHHHhCCCccEEEcCcchhhcc
Confidence 5566777543 4889999999999999998875 68999988754433 2333322 23322 233 4678999
Q ss_pred CCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. .+.||+|+|.. |.+|. +|-..|.+++..|+|||.+++.+.
T Consensus 179 ~-~~~FDtVF~MG--VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 N-LGAFDTVFSMG--VLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred c-cCCcCEEEEee--ehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 8 78999999986 66665 999999999999999999998743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=108.92 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+.+.++. +.+...+...++ ..++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 679999999999988887642 6999999999987776 444455654 566777776664 357899999864 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ +...++..+.++|||||.|++.
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEE
Confidence 2 4667889999999999999976
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=120.16 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=79.3
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC----CeEEEEcCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI----PAISAVMGTE 445 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl----~~~~~v~d~e 445 (796)
.+++.+.++. ....+|||||||+|.++..|+++ .|+++|+++.++..++...+. .+. .+.+...+..
T Consensus 217 trllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccc
Confidence 4567777775 22469999999999999998864 799999999998888755433 332 2344444432
Q ss_pred CCCCCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. .++..+||+|+|+.. +|... ....+|.++.++|+|||.|++..
T Consensus 292 ~-~~~~~~fDlIlsNPP-fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPP-FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-cCCCCCEEEEEECcC-cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 234468999999865 33221 12578999999999999999884
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=111.43 Aligned_cols=96 Identities=23% Similarity=0.353 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfpd~SFDlVvss~~~l~ 465 (796)
...-|||||||+|..+..|... ..+|+|+|+.|++.|+.+. +...+..+|+ +-+||.+++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e-----~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE-----LEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh-----hhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 4789999999999999988764 7899999999998887422 2224455554 88999999999999986 488
Q ss_pred cccc-------h----HHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHIE-------G----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~d-------~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
|..+ | ..+|..++.+|++|+..++.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 8641 2 35678899999999999987
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=117.19 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=86.3
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISA 440 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~ 440 (796)
..|..|.+.-...+.+.+..+. .++.+|||+|||+|.++...++. .|+++|++|..+..++ ..+...++...+.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIE 214 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEE
T ss_pred CcccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEE
Confidence 5688888888777777776543 45789999999999887776653 7999999998887777 6667777766554
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..... .....||+|++|. +. .-+..++..+.++|+|||+|++|..
T Consensus 215 v~~~~~--~~~~~~dlvvANI--~~--~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLSED--LVEGKFDLVVANI--LA--DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCTSC--TCCS-EEEEEEES---H--HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEecc--cccccCCEEEECC--CH--HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 443222 3348899999986 21 1345777889999999999999854
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=111.77 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH------------HcCCCeEEEEcCCCCCCCC-CCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL------------ERGIPAISAVMGTERLPFP-GIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~------------ergl~~~~~v~d~e~LPfp-d~S 453 (796)
++.+|||+|||.|..+.+|+++ .|+|+|+|+..+..+..+... .++..+.+.++|...++.. ...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4679999999999999999987 899999999888764321110 0233466778887666642 357
Q ss_pred eeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 454 FDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 454 FDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
||+|+-..++++... ....++..|.++|||||++++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999998654333322 3367899999999999976554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-10 Score=118.87 Aligned_cols=120 Identities=24% Similarity=0.343 Sum_probs=85.2
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
.|..|.+.-...+.+.+..+. .++++|||+|||+|.++.+.++. .|+|+|++|..+..++ ..++..++......
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~ 216 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQA 216 (300)
T ss_pred ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhc
Confidence 466665555555555555433 36899999999999988887764 7999999998888777 56777777631222
Q ss_pred cCCCCCCCCC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 442 MGTERLPFPG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 442 ~d~e~LPfpd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.....+..+. +.||+|++|. +- .-...+..++.+.|||||+|++|.
T Consensus 217 ~~~~~~~~~~~~~~DvIVANI--LA--~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANI--LA--EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccccchhhcccCcccEEEehh--hH--HHHHHHHHHHHHHcCCCceEEEEe
Confidence 2222233344 5899999985 21 123577888999999999999995
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=111.41 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|+.. .++|+|+++.++..|+.. ...+.+...+... |+++++||+|+++.++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-----~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-----LPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-----CCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 4678999999999999988753 799999999988776532 2234455666655 88999999999987422
Q ss_pred cccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|..+ +...++++++|++ ++++++...
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3222 3578899999998 567776643
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-09 Score=108.97 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=76.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT 444 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~ 444 (796)
.....+.+.+.. .++.+|||||||+|.++..|++ ..|+++|+++.++..++.. ....++. +.+...+.
T Consensus 59 ~~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~-l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 59 HMVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQN-IERLGYWGVVEVYHGDG 133 (205)
T ss_pred HHHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCcEEEEECCc
Confidence 344555555542 3568999999999999988875 2799999999998877643 3445543 45666676
Q ss_pred CCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
........+||+|++... +. .+..++.++|+|||+|++.
T Consensus 134 ~~~~~~~~~fD~Ii~~~~-~~------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAA-AS------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCCccCCCccEEEEccC-cc------hhhHHHHHhcCcCcEEEEE
Confidence 544434578999999863 32 2335788999999999975
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=110.88 Aligned_cols=105 Identities=28% Similarity=0.372 Sum_probs=78.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCC-CC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERL-PF 449 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~L-Pf 449 (796)
+.|.++++ ++.+|||||||.|.+..+|.+. ...|+++++. .+..+.++|+++ ++.|. ..| .|
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~-----~v~~cv~rGv~V--iq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD-----NVAACVARGVSV--IQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH-----HHHHHHHcCCCE--EECCHHHhHhhC
Confidence 34556554 4899999999999999999874 5677877764 345667889876 44443 445 49
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
++++||.|+++.+ ++...+|..+|.|+.|+ |...+++ .|.+.+
T Consensus 72 ~d~sFD~VIlsqt-LQ~~~~P~~vL~EmlRV---gr~~IVs-FPNFg~ 114 (193)
T PF07021_consen 72 PDQSFDYVILSQT-LQAVRRPDEVLEEMLRV---GRRAIVS-FPNFGH 114 (193)
T ss_pred CCCCccEEehHhH-HHhHhHHHHHHHHHHHh---cCeEEEE-ecChHH
Confidence 9999999999985 77677899999999777 5567766 444443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=112.40 Aligned_cols=93 Identities=27% Similarity=0.339 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.. +...++..... ++..+.+||+|+++. ..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~------~~~~~~~fD~Vvani--~~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY------LPQGDLKADVIVANI--LA 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE------EccCCCCcCEEEEcC--cH
Confidence 4789999999999988877764 599999999999888744 44445421111 122222799999975 21
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.....++.++.++|||||+|+++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1246788999999999999999843
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=119.04 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC--CCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL--PFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L--Pfpd~SFDlVvss~ 461 (796)
.+..+||||||+|.++..|+.+ .++|+|+++.++..+. +.+...++. +.+...|+..+ ++++++||.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~-~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVL-KQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4569999999999999999874 8999999999998887 444556664 45556666443 57889999999987
Q ss_pred CCcccccch------HHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEG------GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~------~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .+|.... ..+|.++.|+|+|||.|.+.
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 5 7886433 58999999999999999987
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=106.50 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++.+.+...+... .+++++||+|+++..++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4679999999999999888764 7899999999888776 3444455555556666533 345678999999854332
Q ss_pred cccc--------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHIE--------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~d--------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... ...+|.++.++|||||.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2111 245778899999999999975
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=104.51 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||||||+|.++..++++ +|+++|+++.++..++... ...++. +.+...+. ..+++ +.||+|++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~~~- 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEA-PIELP-GKADAIFIGGS- 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCc-hhhcC-cCCCEEEECCC-
Confidence 4779999999999999988763 7999999999988887443 334443 34444443 23443 57999999752
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .....++..+.++|+|||+|++.
T Consensus 107 ~---~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 107 G---GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 1 23567899999999999999986
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-10 Score=117.39 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHH----cCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALE----RGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~e----rgl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++|||+|||+|.++..|++. .|+|+|++..++..|+...+.. .++. +.+...+.+.+. +.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 578999999999999999974 9999999999998887552211 1111 112223334433 3499999998
Q ss_pred CCccccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+..|. |+..++.-+.+.|||||.+++++
T Consensus 167 --vleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 --VLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred --HHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 45555 99999999999999999999883
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=110.69 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.++.+|||||||+|.++..|+. .+|+|+|+++.|+..++... ...++ .+.+.+...+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCC--eEEEEecccccccCCCccEEEE
Confidence 3467999999999999888764 27999999999987776432 22233 3444555667777889999999
Q ss_pred cCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+ +|+..+. ..+|+++.|+++ |.+++.
T Consensus 136 ~~~-lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 136 NHF-LHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CCe-eecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 985 6655543 579999999998 455544
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=110.05 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=76.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
+|...+...||. ...+++||+|||.|.++..|+.+ .++++|+++..+..|+.+.+.. ..+.+.+.+.... .
T Consensus 30 K~~~~l~aaLp~----~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~ 102 (201)
T PF05401_consen 30 KYRATLLAALPR----RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-W 102 (201)
T ss_dssp HHHHHHHHHHTT----SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---
T ss_pred HHHHHHHHhcCc----cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-C
Confidence 344444445564 45689999999999999999987 9999999998887776444322 2356666665433 5
Q ss_pred CCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|.+.||+||++. +.+.. ++..++..+...|+|||.|++..
T Consensus 103 P~~~FDLIV~SE--VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 103 PEGRFDLIVLSE--VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -SS-EEEEEEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCeeEEEEeh--HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 778999999987 33333 34678999999999999999874
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=109.38 Aligned_cols=113 Identities=20% Similarity=0.320 Sum_probs=83.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-CC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-FP 450 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-fp 450 (796)
+..+...+.. .++.+|||||||+|.++..+.+. .++++|+++.++..++...+ ..+..+.+...+...++ ..
T Consensus 37 ~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGG----LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccC----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhc
Confidence 4445444432 34779999999999999888765 79999999988877764433 33445555666655544 34
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+.||+|+++.. +++..++..+|..+.++|+|||+|+++..
T Consensus 112 ~~~fD~Ii~~~~-l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 112 PGQFDVVTCMEM-LEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCCccEEEEhhH-hhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 578999999864 55555888999999999999999998743
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=115.23 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=90.1
Q ss_pred ccccCCCCccccccHHHH-HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHH
Q 003776 356 YLTFPGGGTQFKNGALHY-IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 356 ~~~Fpgggt~F~~~a~~y-id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A 430 (796)
.+.|......|..+...+ .++|.+.++. ....+|||+|||.|.++..|++. .++.+|++...+..++.. +
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l 202 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-L 202 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-H
Confidence 344444444565544333 5778888886 23459999999999999999875 799999999888777744 4
Q ss_pred HHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccc-h----HHHHHHHHhhcCCCcEEEEEeC
Q 003776 431 LERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE-G----GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 431 ~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d-~----~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...++....+..+....+..+ .||+|+|+.. +|--.+ . ..+|.+..+.|++||.|.+...
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 445555433333333444444 8999999974 332221 1 3788999999999999998866
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=107.75 Aligned_cols=101 Identities=21% Similarity=0.297 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCC-CCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfp-d~SFDlVvss~~~l 464 (796)
.+.+|||+|||+|.++..+++. .++++|+++.++..++.... ..++ .+.+...+...++.. .++||+|++... +
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence 3679999999999999888764 79999999998887774433 3444 355666666555544 378999999864 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++..++..+|.++.++|+|||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 555688999999999999999999874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-09 Score=108.00 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=77.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e 445 (796)
.....+.+.+.. .++.+|||||||+|.++..|+.. .|+++|+++.++..++... ...++. +.+...+..
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l-~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL-KKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcc
Confidence 444555565543 35789999999999999887753 7999999999988887444 344553 566667765
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..+.+.+.||+|++..+ ++ .+...+.+.|||||+|++.
T Consensus 138 ~~~~~~~~fD~I~~~~~-~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 138 LGYEENAPYDRIYVTAA-GP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCCCcCEEEECCC-cc------cchHHHHHhhCCCcEEEEE
Confidence 55556688999999753 32 2334677899999999975
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=107.68 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--C---eEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--G---VLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~---V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
....+.+.+.. .++.+|||||||+|.++..|++. . |+++|+++.++..|+ +.+.+.++. +.+...+...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCccc
Confidence 34455555542 45789999999999999988864 3 999999999988887 444455554 5556666544
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.......||+|++..+ . ..+...+.+.|+|||+|++.
T Consensus 140 ~~~~~~~fD~Ii~~~~-~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAA-G------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcccCCCCEEEEcCC-c------ccccHHHHHhcCcCcEEEEE
Confidence 4334468999998753 2 23446688999999999976
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-09 Score=112.20 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-CCCCCCc---eeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-LPFPGIV---FDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-LPfpd~S---FDlVv 458 (796)
++.+|||+|||+|..+..|+++ .|+++|+|+.|+..++.+..... ++.+..+++|... ++++... ..+++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 3578999999999998888754 79999999999999886654432 3555566777644 4444332 23333
Q ss_pred EcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 CARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 ss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.....+++.. +...+|++++++|+|||+|+|.....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 2222244333 45688999999999999999875433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=99.06 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||+|||+|.++..|+.+ +|+++|+++.++..++... ...+.. +.+...+... ++++..||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 4679999999999999988865 8999999999888776443 334433 4555565433 3455689999997643
Q ss_pred ccccc--------------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHI--------------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~--------------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++... ....++.++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 32100 13467899999999999998764
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=111.72 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-----cCCCCCCC--CCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAV-----MGTERLPF--PGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-----~d~e~LPf--pd~SFDlVvss 460 (796)
.+.++|+|||+|.-++.++.. +|+|+|+++.||..+. +. .++.+.. .+.+..++ .++|.|+|+|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~-----k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK-----KH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh-----cC-CCcccccCCccccccccccccCCCcceeeehhh
Confidence 458999999999766666765 9999999998876443 32 2222211 12233344 48999999999
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.| +||. |+..++++++|+||+.|-++
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEE
Confidence 98 9998 89999999999999987333
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=104.36 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT 444 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~ 444 (796)
...++..+.+.+.. ...+|||+|||+|.++..++.. .++++|+++.++..++ +.+...++. +.+...+.
T Consensus 73 ~~~l~~~~l~~~~~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 73 TEELVEAALERLKK-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDW 146 (251)
T ss_pred hHHHHHHHHHhccc-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECch
Confidence 34455555555442 3568999999999999999864 7999999999988887 444455654 55566665
Q ss_pred CCCCCCCCceeEEEEcCCCcccc------c-------------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWH------I-------------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~------~-------------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +++.++||+|+++..++... . ....++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 43 45678999999975422211 0 01356789999999999999863
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=111.96 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=70.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-----CCCeEEEEcCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVMGT 444 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-----gl~~~~~v~d~ 444 (796)
..++.+.+.+.... ..++.+|||||||+|.++..|+++ .|+++|+++.|+..++.+..... +..+.+...+.
T Consensus 128 ~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 33444445443210 124679999999999999999876 79999999999998875443220 22345555555
Q ss_pred CCCCCCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEE
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv 488 (796)
..+ +++||+|+|...++|+..+. ..++..+.+ |.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 443 47899999987533322222 345555654 45666544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=105.60 Aligned_cols=101 Identities=15% Similarity=-0.016 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH------------HcCCCeEEEEcCCCCCCCC-CCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL------------ERGIPAISAVMGTERLPFP-GIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~------------ergl~~~~~v~d~e~LPfp-d~S 453 (796)
++.+|||+|||.|..+.+|+++ .|+|+|+++..+..+..+... .....+.+.++|...++.. ...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 3679999999999999999987 899999999877765321110 0122355677777666433 258
Q ss_pred eeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 454 FDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 454 FDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
||+|+-..++++... ....++..+.++|||||.+++
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999997654232222 347899999999999996443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=105.05 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC----CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~----LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|+.. .|+++|+++.|+.... +.|+++ .++.....+... .+++ .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 45789999999999999999875 6999999999887665 444443 234555666543 2233 56999997
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... .+| ....+|.++.|+|||||+|+++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 542 111 2245689999999999999986
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=104.90 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|++. .|+++|+++.++..++.... ..+. .+.+...+ ++..+++||+|++...+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 4679999999999999999865 79999999999998885543 3333 34555555 455568899999986422
Q ss_pred cccc-chHHHHHHHHhhcCCCcEEE
Q 003776 465 PWHI-EGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 465 ~w~~-d~~~~L~Ei~RVLKPGG~fv 488 (796)
|+.. +...++..+.+++++++++.
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 3322 44678888888876555443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=110.39 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+++.+|||+|||+|.++..++. ..++|+|+++.|+..++.. +...++. +.+...|...+|+++++||+|+++..+-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3577999999999998766544 4899999999999888744 4445554 3567788888999889999999974211
Q ss_pred -----cccc--c-hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 -----PWHI--E-GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 -----~w~~--d-~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+. + ...+|.++.|+|||||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1111 1 36889999999999999998744
|
This family is found exclusively in the Archaea. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=101.25 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=93.2
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~ 446 (796)
.++.+...+....-.+...+|||+|||.|.+...|++. .++|+|.++..+..|+ ..|+..+.+ +.+.+.|...
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccC
Confidence 34555555442222234459999999999999999975 5899999999888876 778888877 6788888765
Q ss_pred CCCCCCceeEEEEcC--CCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 447 LPFPGIVFDAVHCAR--CRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 447 LPfpd~SFDlVvss~--~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
-.+..+.||+|+--. -++..++ .+..++.-+.++|+|||+|+|. .+..+..|+.+.+
T Consensus 130 ~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt--SCN~T~dELv~~f 193 (227)
T KOG1271|consen 130 PDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT--SCNFTKDELVEEF 193 (227)
T ss_pred CcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE--ecCccHHHHHHHH
Confidence 567778899987521 1122332 2346788899999999999985 4566666665554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=100.01 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=73.2
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPF 449 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LPf 449 (796)
.+...+.. .++.+|||+|||+|.++..++. ..|+++|+++.++..++.. +.+.++. +.+...++.. ++.
T Consensus 31 ~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 31 LLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhh
Confidence 34555542 3578999999999999988864 3799999999998888744 4444543 4555555432 332
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+|.|+... ..+...+|.++.++|+|||+|++..
T Consensus 106 ~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 223457665532 1245789999999999999999874
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=100.69 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..++. .+|+++|+++.++..++.. +...++ .+.+...+... ++.....||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 3578999999999999887754 2799999999998887744 444553 34455555543 3433468999998
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... ..++..+|.++.++|||||+|++.
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 542 236788999999999999999975
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=106.67 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..++++ +++++|+ +.++..++ +.+.+.++. +.+...|....+++. +|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 45689999999999999998875 6889997 66776665 445555553 456667765556653 69998876
Q ss_pred CCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +|...+ ...+|++++++|||||+|++...
T Consensus 224 ~-lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 I-LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred h-hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4 332222 25799999999999999998754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=109.16 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhh--C----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.+++|||||||.|.++..++. + .++++|+++.++..|+.......++. +.+...+...++-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 578999999998855444332 2 69999999999988885443435543 577777765554334689999998
Q ss_pred CCCcccc-cchHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWH-IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+++.|. .+...+|..+.++|+|||+|++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 556664 58899999999999999999987
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-09 Score=96.50 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=73.6
Q ss_pred CCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..+++ ..++++|+++..+..++..+. ..++ .+.+.+.|...++ +++++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 35899999999999888875 489999999987777764433 3443 4677777765554 77899999999875
Q ss_pred Cccccc-------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHI-------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~-------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.... ....++.++.++|||||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 443221 12578999999999999999763
|
... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-09 Score=112.74 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC-CCC-CCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RLP-FPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e-~LP-fpd~SFDlVvss~~~l 464 (796)
+.+++||+|||||.++..|..+ +++|+|||..|+..| .++|+--...+.+.. -++ ..+..||+|++.-. +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA-----~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA-----HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH-----HhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 3789999999999999999875 899999998887554 466654444444432 233 45678999999863 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+.-++..+|.-+...|+|||+|.||+-..
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 666688999999999999999999996433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=85.98 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=71.4
Q ss_pred EEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC-CCCceeEEEEcCCCccc-
Q 003776 392 VVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF-PGIVFDAVHCARCRVPW- 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf-pd~SFDlVvss~~~l~w- 466 (796)
+|||+|||+|.++..++. ..++++|+++..+..++............+...+....+. ..+.||+|+++.. +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 589999999999988886 3899999999777666522211112234555555544432 4578999999874 444
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
......++..+.++|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 447789999999999999999975
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=104.52 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
....|.|+|||.+.++..+... .|...|+.... -....+|+..+|++++++|+|++.+++ .-
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSL--MG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSL--MG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhh--hC
Confidence 4579999999999999887654 78888885421 135678899999999999999997742 34
Q ss_pred cchHHHHHHHHhhcCCCcEEEEE
Q 003776 468 IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+...+|.|.+|+|||||.|.|+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEE
Confidence 58899999999999999999987
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-08 Score=101.07 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-C-CCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-L-PFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-L-Pfpd~SFDlVvss~~~l 464 (796)
+.+|||||||+|.++..|+.. .++++|+++.++..++ .+++ .+...+... + ++++++||+|+|+.+ +
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-----~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~-l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-----ARGV--NVIQGDLDEGLEAFPDKSFDYVILSQT-L 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-----HcCC--eEEEEEhhhcccccCCCCcCEEEEhhH-h
Confidence 679999999999999988754 6799999987765553 3444 344555533 4 477889999999975 6
Q ss_pred ccccchHHHHHHHHhhcCC
Q 003776 465 PWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKP 483 (796)
++..++..+|+++.|++++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH 104 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe
Confidence 7667899999999887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-08 Score=99.71 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=73.4
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFP 450 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfp 450 (796)
...+.+.+.. .++.+|||+|||+|.++..|+.. .|+++|+++.++..++..+. ..++. +.+...+......+
T Consensus 67 ~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLK-QLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHH-HCCCCceEEEECCcccCCCc
Confidence 3444444442 45789999999999998877664 79999999988887774443 34543 45555554322123
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.++||+|++..+ ++ .+...+.+.|+|||.|++..
T Consensus 142 ~~~fD~I~~~~~-~~------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAA-AP------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccC-ch------hhhHHHHHhcCCCcEEEEEE
Confidence 478999999753 32 23466889999999999863
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=106.27 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC-CCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp-d~SFDlVvss~~~l 464 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...+..+.+...|.....++ .++||+|+|+..++
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 469999999999999888752 7999999999998887 44555566677777775433232 35799999987544
Q ss_pred cccc--------------------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHI--------------------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~--------------------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.... + ...++.++.+.|+|||++++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3210 1 1255666778999999998764
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=97.47 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SFD 455 (796)
++.+|||+|||+|.++..++.+ .|+++|+++.+ ....+.+...+....+ ++.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 5789999999999998887653 49999999843 1112344555554432 4567899
Q ss_pred EEEEcCCC---cccccc-------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCR---VPWHIE-------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~---l~w~~d-------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|++..+. -.|..+ ...+|.++.++|+|||+|++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99986420 112222 2578999999999999999863
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-08 Score=104.72 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=88.6
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP 436 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~ 436 (796)
+-|.|.+|--...++.++|...-..........++||||+|.|..+..|+.. .|++.++|+.|. ....++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCe
Confidence 4567788877777776666432111111124678999999999999999885 899999999874 333457764
Q ss_pred eEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+. +...+.-.+..||+|.|.. ++.-|.+|..+|++|++.|+|+|+++++..
T Consensus 139 vl----~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 139 VL----DIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred EE----ehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 32 2222322346799999965 466677999999999999999999998754
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=97.82 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEeCChhhHHHHHHHHHHHc---CCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 413 LTMSFAPKDEHEAQVQFALER---GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 413 ~gvDiSp~dl~~A~~q~A~er---gl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
+|+|+|+.|+..|+.+..... ...+.+.+++...+|+++++||+|++.++ +++..++..+|++++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999998864432211 12467888899999999999999999875 77777999999999999999999998
Q ss_pred EeCC
Q 003776 490 SATP 493 (796)
Q Consensus 490 s~~~ 493 (796)
....
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 7443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-08 Score=104.24 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+..+|||+|||+|.++..|+.+ .|+++|+++.++..|+ +.+...++. +.+...|... +++.++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3568999999999999999864 7999999999998887 445555653 5566666522 334568999999743
Q ss_pred Ccccc----------cc--------------hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWH----------IE--------------GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~----------~d--------------~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++... .+ ...++.++.++|+|||++++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22210 01 14568889999999999998743
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-07 Score=97.34 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+..+|||+|||+|.++..|+.. .|+++|+++.++..++..........+.+...+... +++.++||+|+++..++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4679999999999999988763 799999999998888754431122235555565422 33457899999975433
Q ss_pred cccc-------------------------chHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHI-------------------------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~-------------------------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... ....++.++.++|+|||++++.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2100 1135677888999999999986
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=107.24 Aligned_cols=107 Identities=17% Similarity=0.328 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..++.+ .|+++|+++.++..++ +.+...|+.+.+...|...++ ++.++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 35789999999999999888763 7999999999998887 455556776666777776554 3457899999643
Q ss_pred -CC----------cccccch----------HHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 462 -CR----------VPWHIEG----------GKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 462 -~~----------l~w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|. +.|.... ..+|..+.++|||||+|++++....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 11 1122111 3688999999999999999865433
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=102.47 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=74.8
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER- 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~- 446 (796)
....|..-+..+. ..++.+|||||||+|.++.+|+.. .|+++|+++.++... +..+..+ ..+..++.|+..
T Consensus 117 laa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-l~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 117 LAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-TNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred HHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-HHHhhhc-CCCEEEECCccCh
Confidence 3344444444332 246789999999999999999875 599999998654322 2444333 234556666532
Q ss_pred --CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 --LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 --LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++++..+||+|++..+ . ..+...++.+++++|||||+|++.
T Consensus 194 ~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 2223458999999762 2 113446667899999999999985
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=100.02 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-----cCCCeEEEEcCCCC-CCCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-----RGIPAISAVMGTER-LPFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-----rgl~~~~~v~d~e~-LPfpd~SFDlV 457 (796)
+.+.+||+||||.|.++..++++ +|+++|+++.++..++..+..- ....+.+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34789999999999999988775 6999999999988887554321 12335566676532 33356789999
Q ss_pred EEcCCCcccccc----hHHHHHHHHhhcCCCcEEEEE
Q 003776 458 HCARCRVPWHIE----GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 458 vss~~~l~w~~d----~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++..+ -++... ...+++.+.++|+|||.|++.
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99642 333221 257789999999999999975
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=100.51 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...++. +.+...+... +++...||+|+++..++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999999988863 7999999999988887 445555554 5566666432 34445899999975333
Q ss_pred ccc------------c------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWH------------I------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~------------~------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... + ....++.++.++|+|||+|++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 211 0 12367788999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=103.46 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...|... +++.++||+|+|+..++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999999998764 7999999999998887 445555553 5566666422 23456899999985332
Q ss_pred cc------------cc--------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PW------------HI--------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w------------~~--------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. .+ + ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 00 0 1366888999999999999863
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=105.50 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEE--EEcCCCCCCC--CCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAIS--AVMGTERLPF--PGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~--~v~d~e~LPf--pd~SFDlVvs 459 (796)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++ +.+...|+.+.. ...+...+++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 35789999999999988888763 7999999999998887 445556766433 3344444443 5678999995
Q ss_pred c-----CCCcccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 460 A-----RCRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 460 s-----~~~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
. .+.++.+++ ...+|.++.++|||||.|++++....
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 122322222 24789999999999999999866443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=99.57 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=78.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~ 446 (796)
.|.+.+...+.. ...+.+|||||||.|.++..|+.+ .|+++|+++.++..++..+.... ...+.+++.|...
T Consensus 52 ~y~~~m~~~l~~---~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLF---NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 455555443322 134679999999999999988764 79999999998887775443221 1234566666422
Q ss_pred -CCCCCCceeEEEEcCC---CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 -LPFPGIVFDAVHCARC---RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 -LPfpd~SFDlVvss~~---~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++-..++||+|++... .++.+.....++.++.++|+|||.|++.
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2322368999998531 0111123369999999999999999985
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-07 Score=99.94 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+....|.|+|||.+.++.. ....|..+|+.+. .-....+|+.++|+++++.|++++.++ ...
T Consensus 179 ~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMG 240 (325)
T ss_pred cCceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhc
Confidence 3467899999999988761 1237899988652 124577889999999999999998664 334
Q ss_pred cchHHHHHHHHhhcCCCcEEEEE
Q 003776 468 IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+...+|.|++|+|||||.++|+
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEE
Confidence 58899999999999999999987
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-07 Score=96.02 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LP--fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+++ .|+++++.+.+...|+...+. .++. +.++..|...+. ....+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4789999999999999999876 799999999988888755554 2222 445556654432 334479999998
Q ss_pred CCCccccc-----------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHI-----------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~-----------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+..-.. +...+++-..++|||||+|.+..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 74322111 24578888999999999999873
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=100.38 Aligned_cols=106 Identities=17% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
....+.+.+.. +++.+|||||||+|.++..|++. .|+++|+++.++..|+ +.+...++. +.+...+...
T Consensus 68 l~a~ll~~L~i----~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcCC----CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhh
Confidence 33445454432 35689999999999999998863 4999999999988877 334445554 4555566555
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+.....||+|++... +. .....+.++|+|||.+++.
T Consensus 143 ~~~~~~~fD~Ii~~~g-~~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 143 GVPEFAPYDVIFVTVG-VD------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccccCCccEEEECCc-hH------HhHHHHHHhcCCCCEEEEE
Confidence 4444567999999753 22 2334578899999999875
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=101.61 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH------c----CCCeEEEEcCCC------CCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE------R----GIPAISAVMGTE------RLPF 449 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e------r----gl~~~~~v~d~e------~LPf 449 (796)
++.+|||||||-|.-..-...+ .++|+|++...+.+|+.++..- + ...+.++..|.. .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999855554443 7999999999999998766321 1 123455666542 2233
Q ss_pred CCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....||+|-|-++ +|+.. ....+|..+...|||||+|+.+.+
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3359999999886 88765 225689999999999999998744
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-07 Score=103.86 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=79.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC----CCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP----FPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP----fpd~SFDlV 457 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++ +.+...|+. +.+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 35789999999999999888763 6999999999998887 445556664 456667766665 456789999
Q ss_pred EEcC-----CCcccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 458 HCAR-----CRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 458 vss~-----~~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
++.. ..+..+++ ...+|.++.++|||||+|++++....
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9631 12332322 24779999999999999998865443
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=101.21 Aligned_cols=104 Identities=23% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc------CCCeEEEEcCC------CCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER------GIPAISAVMGT------ERLPFPGI 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er------gl~~~~~v~d~------e~LPfpd~ 452 (796)
+++..+||||||-|.-+...-++ .++++||+...+..|+.++-.-+ -.++.++.+|. ..+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35788999999999765554443 89999999999988876543211 23456777763 45577777
Q ss_pred ceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|-|-+| +|+.. ....+|+.+.+.|||||+||-+.|
T Consensus 196 ~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred Ccceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 7999999887 77764 346889999999999999997643
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=107.09 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC-CCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP-FPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP-fpd~SFDlVvss 460 (796)
.++.+|||+|||+|..+.+++.. .|+++|+++.++..++ +.+.+.|+. +.+...|...++ +..++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45789999999999988877653 7999999999998887 445566765 456667776665 456789999963
Q ss_pred C-C----Ccccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 R-C----RVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~-~----~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. | .+..+++ ...+|..+.++|||||++++++...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1 1211111 1456889999999999999987643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=90.70 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
.+.+|||||||+|.++..|+++ .|+++|+++.++..++...+. ...+.+...|+..+++++..||.|+++. ++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~---Py 87 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL---PY 87 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC---Cc
Confidence 4679999999999999999886 899999999888777644322 2245677788888888877899999975 34
Q ss_pred ccchHHHHHHHHh--hcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNR--VLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~R--VLKPGG~fv~s 490 (796)
+.. ...+..+.+ .+.++|.|++.
T Consensus 88 ~~~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH-HHHHHHHHhcCCCcceEEEEEE
Confidence 432 233333332 24588888876
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=94.21 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHH------------HHHcCCCeEEEEcCCCCCCCC---C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQF------------ALERGIPAISAVMGTERLPFP---G 451 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~------------A~ergl~~~~~v~d~e~LPfp---d 451 (796)
++.+||+.|||.|.-+.+|+++ .|+|+|+|+..+..+..+. ...++..+.+.++|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4679999999999999999986 8999999998877654321 112355678888998887642 2
Q ss_pred CceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.||+|+-..+++..++ ....++..+.++|+|||.+++.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 67999986544344344 3478999999999999998865
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-07 Score=102.14 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEc-
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCA- 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss- 460 (796)
.++.+|||+|||+|..+..|+. ..|+++|+++.++..++ +.+...|+. +.+...++..++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3568999999999998877765 27999999999998887 455566765 456666766654 45789999962
Q ss_pred ---C-CC------cccccch----------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 ---R-CR------VPWHIEG----------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ---~-~~------l~w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. .. +.|+..+ ..+|.++.++|||||+|++++...
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 11 1233221 358999999999999999986544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=93.46 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCC-CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGT-ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~-e~LPfpd~SFDlVvs 459 (796)
.+++||+||||+|.++..++++ .++++|+++.++..++..+....+ ..+.+...|. .-+....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999888764 699999999888877754433211 2234444543 222223478999998
Q ss_pred cCCCcccccc----hHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIE----GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d----~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... .+.... ...+++.+.++|+|||.|++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 653 222221 357889999999999999976
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=95.02 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT 444 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~ 444 (796)
......+.+.+.. +++.+|||||||+|++++.|+.. .|+++|+.+.....|+..++. .++ ++.+...|.
T Consensus 58 P~~~a~~l~~L~l----~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALDL----KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTTC-----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-G
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcch
Confidence 4455566666653 46889999999999999988863 488999999887777755544 344 456666664
Q ss_pred C-CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 445 E-RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 445 e-~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .+| ....||.|++..+ +. .. -..+.+.||+||++++-
T Consensus 133 ~~g~~-~~apfD~I~v~~a-~~---~i---p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAA-VP---EI---PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGTTG-GG-SEEEEEESSB-BS---S-----HHHHHTEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeec-cc---hH---HHHHHHhcCCCcEEEEE
Confidence 2 232 3467999999864 32 22 24467779999999975
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-07 Score=95.44 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++.. +...++. +.+...|...++...+.||+|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n-~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIAN-INRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH-HHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35789999999999999887653 699999999998888744 4445654 4555566666665556799999732
Q ss_pred -C----Ccc--------ccc--------chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 -C----RVP--------WHI--------EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 -~----~l~--------w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
| .+. |.. ....+|..+.++|||||+|++++...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 111 111 11358889999999999999986543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=91.79 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCC-CCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPF-PGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPf-pd~SFDlVvss~~~ 463 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..++.. +...+. .+...|... ++- ..+.||+|+++..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999988753 799999999998888744 444443 455555432 321 13579999998654
Q ss_pred ccc------------cc---------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPW------------HI---------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w------------~~---------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. +. + ...++..+.++|+|||+|++..
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 431 10 1 1356677789999999999873
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-08 Score=86.64 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=61.9
Q ss_pred cccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhcccc---cccccccccCCCCccccccccccccccccCCcc
Q 003776 648 MDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFG---IYHDWCESFSTYPRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 648 mDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~ 723 (796)
||+|||.|-+++.|.++ +.=|..+-+.. ..+..+-+|.--. +.+.=-+.+|..+++||+|++.++|..+ -.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 79999999999999888 43333333322 3455555544211 2222234555556999999999999877 57
Q ss_pred hHHHHHhhcccccCCcEEEE
Q 003776 724 LVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~ 743 (796)
...+|-|+-|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=92.10 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCCCC-C-CCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGTER-L-PFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~e~-L-Pfpd~SFDlV 457 (796)
+.+.+||+||||.|.++..+++. +|+.+|+++.++..++..+.... ...+.++..|... + ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34789999999999999999875 68899999988887775543321 2235666666422 1 1235689999
Q ss_pred EEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 458 HCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++... -++.. -...+++.+.++|+|||.|+...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98642 33322 12478999999999999998653
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.7e-07 Score=90.54 Aligned_cols=99 Identities=26% Similarity=0.387 Sum_probs=71.2
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCC-CC--CCCCceeEEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTER-LP--FPGIVFDAVHCARC 462 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~-LP--fpd~SFDlVvss~~ 462 (796)
..+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.. .+...++.. |+ ++++++|.|+.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999874 8999999998888776 4445556654 455556544 32 56799999999875
Q ss_pred Ccccccc--------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIE--------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
-+|.-. -..+|..+.++|+|||.|.|.+
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 666541 1589999999999999999873
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-06 Score=92.07 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=71.5
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+|||||||+|.++..|+.. .|+++|+++..+..|+ +.|...++.. ..+..+. .-+.. +.||+|+||..++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dl-f~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDL-FEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeec-ccccC-CceeEEEeCCCCCCC
Confidence 8999999999999999874 7999999999988887 6666777532 2233321 11233 489999999876665
Q ss_pred c---c-------ch--------------HHHHHHHHhhcCCCcEEEEEe
Q 003776 467 H---I-------EG--------------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~---~-------d~--------------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. . +| ..++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 4 0 11 256778899999999999863
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=89.34 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CC-----CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-----FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LP-----fpd~SFD 455 (796)
+..+|||||||+|..+..|+.. .|+++|+++..+..|+..+ .+.|+. +.+..+++.. |+ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3679999999999877666542 7999999998888787444 445553 4556666522 22 1246899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+.... ......++..+.++|||||++++...
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998641 23456889999999999999997643
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=96.62 Aligned_cols=104 Identities=15% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvs 459 (796)
.++.+|||+|||+|..+..++.+ .|+++|+++.++..++ +.+...|+. +.+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35679999999999999888763 6999999999988877 455556654 455666665543 34 78999997
Q ss_pred cC-CC----cc------cccc----------hHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 460 AR-CR----VP------WHIE----------GGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 460 s~-~~----l~------w~~d----------~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.. |. +. |... ...+|..+.++|||||.|++++..
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 53 10 11 1111 135789999999999999987543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=95.74 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCC----CCCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERL----PFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~L----Pfpd~SFDlVv 458 (796)
.+.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++. +.+..+|+..+ ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3679999999999988765442 7999999999998887 444445553 45666775332 12346899999
Q ss_pred EcCCCccccc--------chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 459 CARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 459 ss~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
+....+.-.. +...++....++|+|||+|+++++...-...+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~ 348 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDL 348 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHH
Confidence 9864322111 12345556789999999999765544444333
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=90.59 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=80.6
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC-C--CCCCceeEEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-P--FPGIVFDAVHCARC 462 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L-P--fpd~SFDlVvss~~ 462 (796)
..+||||||.|.+...++.+ .++||++...-+..+. +.+.+.++ ++.+...|+..+ + ++++++|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999986 8999999988777775 67778888 777777775332 2 45569999999987
Q ss_pred Ccccccch--------HHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEG--------GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s 490 (796)
-+|+-.. +.+|..+.++|+|||.|.|.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 8887522 58999999999999999997
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=85.18 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMG 443 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d 443 (796)
.....+.|.+.++. .+.+||+||||||..+.+++.+ .....|+++..+. .....+.+.+++.. -...|
T Consensus 11 k~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 11 KDPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLALD 84 (204)
T ss_pred HhHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeEee
Confidence 34455666666664 2336999999999999999875 3344455543321 11233334443311 11222
Q ss_pred CCC--CC------CCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 444 TER--LP------FPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 444 ~e~--LP------fpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+.. .| +..++||+|+|... +|-.. ....+|..+.++|+|||+|++-.++.++
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 211 22 23569999999763 55444 4478999999999999999998877654
|
The function of this family is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=92.10 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||+|||+|.++..++.+ +|+++|+++.++..++.. ...+.+...|...+.. ...||+|+++..+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 3569999999999998877653 799999999887666532 2235667777766543 46899999987644
Q ss_pred ccccc-------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIE-------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d-------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.... ...++..+.++|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 32111 235667788999999987765
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=91.89 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=68.8
Q ss_pred CEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--C--CCCCCCCceeEEEEc
Q 003776 391 RVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--E--RLPFPGIVFDAVHCA 460 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e--~LPfpd~SFDlVvss 460 (796)
.+||+||||.|.....|++- .|.+.|+||..+..-+.+..... ......+.|. . .-|...+++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999888777763 68999999976654432211100 1112233332 2 335678999999998
Q ss_pred CCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.+.--++ ....+|.+++++|||||.++|..-
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 74332333 447899999999999999999843
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=94.52 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH----H---cCCCeEEEEcCCCC-CCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL----E---RGIPAISAVMGTER-LPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~----e---rgl~~~~~v~d~e~-LPfpd~SFD 455 (796)
..+.+||+||||+|..++.+++. +|+++|+++.++..|+..... . ....+.+.+.|... ++-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34679999999999988888764 799999999988877731110 1 12345666666533 444457899
Q ss_pred EEEEcCCCcccc-----cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCRVPWH-----IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~l~w~-----~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|++... -+.. .....++..+++.|+|||.|++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999742 1111 112568899999999999998763
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.2e-06 Score=82.40 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCC-CCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGT-ERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~-e~LPfpd~SFDlVvss~ 461 (796)
.++.+++|||||+|+++..++. .+|+++|-++..+...+ +.+.+.|++....+ +++ +.|+-.+ +||.||...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 4688999999999999998883 28999999988776665 55666677654444 444 4454322 799999976
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .....+|..+...|||||++++.
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 3 35789999999999999999976
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=86.91 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC-CCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT-ERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~-e~LP 448 (796)
....+.+.+.. .++.+||+||||+|+.++.|++. +|++++..+.....|+..+ ...|. ++...+.|. .-+|
T Consensus 60 ~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCC
Confidence 34455555543 56899999999999999999875 8999999987766666443 44566 345555553 3333
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+...||.|+...+ .... | ..+.+.|||||++++-
T Consensus 135 -~~aPyD~I~Vtaa-a~~v--P----~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 135 -EEAPYDRIIVTAA-APEV--P----EALLDQLKPGGRLVIP 168 (209)
T ss_pred -CCCCcCEEEEeec-cCCC--C----HHHHHhcccCCEEEEE
Confidence 2368999998753 3322 2 3356679999999975
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-06 Score=96.32 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC----CCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE----RLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e----~LPfpd~SFDlVvss 460 (796)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...+.. .+++.+++||+|++.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 34679999999999999999875 7999999999999887 445555553 566666653 244666789999997
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... . .....+..+.+ |+|++.++++-
T Consensus 375 PPr---~-g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPR---A-GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCC---c-ChHHHHHHHHh-cCCCeEEEEEe
Confidence 532 1 23456655555 69999999883
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=89.60 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
...++||.|||.|+.+..|+-. .|..++..+..+..|+..+.....-...++..+.+.+-.+.+.||+|++-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4679999999999999977653 7888999988887776443332222245666667666545579999999887544
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... |...+|+.+...|+|+|++++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 443 67899999999999999999753
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-06 Score=88.01 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=65.4
Q ss_pred CCEEEEECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..++.+ .|+++|+++.++..|+.. ...+.+...|....++ +++||+|+++..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 579999999999999887642 799999999877666522 2234566677655554 468999999875
Q ss_pred Cccccc-c----------hHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWHI-E----------GGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~~-d----------~~~~L~Ei~RVLKPGG~fv 488 (796)
+..... + ...++..+.|+|+||++++
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 442111 1 2357777888777777633
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=84.57 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc--
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-- 442 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-- 442 (796)
....+.+.+.+.+.+..+.+ +..+||+|||+|.++..|+.. .|+++|.++..+.-|. ..|+..++...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEec
Confidence 45677777777776544433 458999999999998888763 8999999998887775 555554444322222
Q ss_pred --C---CCCCCCCCCceeEEEEcCCCcccccchH--------------------------HHHHHHHhhcCCCcEEEEEe
Q 003776 443 --G---TERLPFPGIVFDAVHCARCRVPWHIEGG--------------------------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 443 --d---~e~LPfpd~SFDlVvss~~~l~w~~d~~--------------------------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. ....+...+.+|+++|+..++... |.. .++.-+.|.|+|||.+.|..
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~d-D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKD-DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccccCceeEEecCCCccccc-chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 1 134456678999999998655432 111 34556779999999999983
Q ss_pred CCCCCCchHHHHHH
Q 003776 492 TPVYQKLPEDVEIW 505 (796)
Q Consensus 492 ~~~~~~l~El~~~~ 505 (796)
.....-+.+...|
T Consensus 286 -~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 286 -VERKEHSYLVRIW 298 (328)
T ss_pred -cccccCcHHHHHH
Confidence 3333344455544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.3e-06 Score=99.62 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..++.. .|+++|+++.++..++... ...++. +.+...|... +.-..++||+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 679999999999999999874 5999999999999888444 444553 5666676522 2111468999999754
Q ss_pred Cccccc----------chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHI----------EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~----------d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+.-.. +...++..+.++|+|||.|+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 332111 235678888999999999998744
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.6e-06 Score=90.23 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCC-CCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF-PGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPf-pd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..|+ +.+...++. +.+...|+..+.. ..+.||+|++...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP-- 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP-- 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--
Confidence 3579999999999999999875 7999999999998887 555566664 5677777654432 3457999999752
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.......+.++...++|++.++++
T Consensus 250 --r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 250 --RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred --CCCccHHHHHHHHHcCCCeEEEEE
Confidence 112223344444557898888877
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=71.00 Aligned_cols=97 Identities=31% Similarity=0.394 Sum_probs=67.3
Q ss_pred EEEECCCCchhH--HHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC--CCCCC-CceeEEEEcCCCc
Q 003776 393 VLDVGCGVASFG--GFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER--LPFPG-IVFDAVHCARCRV 464 (796)
Q Consensus 393 VLDIGCGtG~~a--~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~--LPfpd-~SFDlVvss~~~l 464 (796)
+||+|||+|... ..+... .++++|+++.++..+...... .+.. +.+...+... +++.. ..||++ +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999843 333332 688899999887764322222 3222 3455555544 78887 489999 655433
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. .....+.++.++|+|+|.+++...
T Consensus 130 ~~~-~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLL-PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 333 378999999999999999998744
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=81.01 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=75.2
Q ss_pred cccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEc
Q 003776 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVM 442 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~ 442 (796)
+.......+.+...+... ..+.+|||+|||+|.++..++. ..|+++|+++..+..++ +.+...++. +.+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEc
Confidence 444455555555555321 2356999999999999985443 28999999998877666 444444543 455556
Q ss_pred CCC-CCCCCCCceeEEEEcCCCcccccc-hHHHHHHHHh--hcCCCcEEEEEe
Q 003776 443 GTE-RLPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNR--VLRPGGFFIWSA 491 (796)
Q Consensus 443 d~e-~LPfpd~SFDlVvss~~~l~w~~d-~~~~L~Ei~R--VLKPGG~fv~s~ 491 (796)
|.. .++.....||+|+++.. +... ...++..+.. +|+|+|++++..
T Consensus 110 D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 642 23333457999999864 2222 2344454444 489999999873
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.2e-06 Score=95.44 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHH--HHH-H----cCCCeEEEEcCCCC-CCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQ--FAL-E----RGIPAISAVMGTER-LPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q--~A~-e----rgl~~~~~v~d~e~-LPfpd~SFD 455 (796)
+++++|||||||+|..+..++++ +|+++|+++.++..++.. +.. . ....+.+...|... +....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35789999999999999888764 799999999988877742 111 1 11234556666533 333347899
Q ss_pred EEEEcCCCcccccc-----hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIE-----GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d-----~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++... .++... ...+++.+.++|||||.|++...
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999753 333221 24688999999999999998643
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.9e-06 Score=85.30 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
....+|||||+|+|.++..++++ +++.+|+ |..+..++ + .-.+.+..+|.. -|+|. +|+|+....+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 34679999999999999999875 7888888 43443333 2 334566666664 56665 9999998752
Q ss_pred ccccc-chHHHHHHHHhhcCCC--cEEEEEeCCCCC
Q 003776 464 VPWHI-EGGKLLLELNRVLRPG--GFFIWSATPVYQ 496 (796)
Q Consensus 464 l~w~~-d~~~~L~Ei~RVLKPG--G~fv~s~~~~~~ 496 (796)
..|.. +-..+|+.+++.|+|| |++++..+....
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 33332 3468999999999999 999987655443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=81.28 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.++.+|||.|.|+|.++.+|+.. +|+++++-+.....|+.++.. .++. +.+...|....-++. .||+|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEEEc
Confidence 46899999999999999999953 899999998887777754443 3433 455556665554554 89999985
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ++|..+|..+..+|+|||.+++-.+
T Consensus 171 m------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 L------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred C------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 4 4888999999999999999997633
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=84.39 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE-EEEcCC-----CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGT-----ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v~d~-----e~LPfpd~SFDlVvs 459 (796)
.+.+|||+|||||.|+..|+++ .|+++|+++.|++....+ ...+. +...+. +.++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 4779999999999999999876 799999999887653222 11111 111122 222222247888888
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ ..|..+.++|+| |.+++-.-
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcC
Confidence 753 358899999999 88776533
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=82.36 Aligned_cols=101 Identities=19% Similarity=0.373 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHH----HcCCC-------------------------
Q 003776 390 TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFAL----ERGIP------------------------- 436 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~----ergl~------------------------- 436 (796)
+..+|||||..|.++..+++ +.|+|+||++..+..|+...-. +.-+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 67899999999999999987 3899999999988887643210 00000
Q ss_pred -----e-E----EEEcC-CCCCCCCCCceeEEEEcC----CCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 437 -----A-I----SAVMG-TERLPFPGIVFDAVHCAR----CRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 437 -----~-~----~~v~d-~e~LPfpd~SFDlVvss~----~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. . -.+.. ..-|-+....||+|+|.. ..+.|+. -+..+|+.|.+.|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0 00111 111223456799999842 1244554 3368999999999999999986
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=90.70 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC----CCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER----LPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~----LPfpd~SFDlVvss~ 461 (796)
++.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...+... +++.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4579999999999999999874 7999999999998887 444555554 4566666532 334456899999865
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... -...++..+.+ |+|++.++++
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEc
Confidence 3111 12456665554 8999988876
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=86.15 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=76.0
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCc----hhHHHHhh--------CCeEEEeCChhhHHHHHHHHHH
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVA----SFGGFLFD--------RGVLTMSFAPKDEHEAQVQFAL 431 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG----~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ 431 (796)
|.|.....++. .|.+.+.. ....-+|+..||+|| +++..|.+ -.|+|+|++...+..|+.-.-.
T Consensus 94 T~FFRd~~~f~-~L~~~~~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 94 TAFFREAHHFP-ILAEHARR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCccCCcHHHH-HHHHHHHh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 44555555553 33333221 122469999999999 45555544 1699999999998887643100
Q ss_pred ---HcCC----------------------------CeEEEEcCCCCCCCC-CCceeEEEEcCCCccccc-chHHHHHHHH
Q 003776 432 ---ERGI----------------------------PAISAVMGTERLPFP-GIVFDAVHCARCRVPWHI-EGGKLLLELN 478 (796)
Q Consensus 432 ---ergl----------------------------~~~~~v~d~e~LPfp-d~SFDlVvss~~~l~w~~-d~~~~L~Ei~ 478 (796)
-+++ .+.+...+....+++ .+.||+|+|-..+++... ....++..++
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 0010 023334444333443 578999999654333332 4579999999
Q ss_pred hhcCCCcEEEEE
Q 003776 479 RVLRPGGFFIWS 490 (796)
Q Consensus 479 RVLKPGG~fv~s 490 (796)
+.|+|||+|++.
T Consensus 250 ~~L~pgG~L~lG 261 (287)
T PRK10611 250 PLLKPDGLLFAG 261 (287)
T ss_pred HHhCCCcEEEEe
Confidence 999999999876
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.8e-05 Score=81.39 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHhCccc----ccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--e
Q 003776 368 NGALHYIDFIQESVPDV----AWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--A 437 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i----~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~ 437 (796)
+++..|+..|.+.+... ...+...+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 44677887777765321 11124679999999999887777653 79999999999988885544431443 2
Q ss_pred EEEEc-CCCCC----CCCCCceeEEEEcCC
Q 003776 438 ISAVM-GTERL----PFPGIVFDAVHCARC 462 (796)
Q Consensus 438 ~~~v~-d~e~L----Pfpd~SFDlVvss~~ 462 (796)
.+... +...+ ..+.+.||+|+|+..
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 23222 22221 134678999999974
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=83.88 Aligned_cols=102 Identities=21% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc------------CCCeEEEEcCCCCCCCCC-C
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER------------GIPAISAVMGTERLPFPG-I 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er------------gl~~~~~v~d~e~LPfpd-~ 452 (796)
.+..+||..|||.|.-+..|+++ +|+|+|+|+..+..+..+..... .-.+.+.++|.-.++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 45679999999999999999987 89999999976655532221100 012356677776665433 4
Q ss_pred ceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 453 VFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 453 SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.||+|+=..+++-.++ ....+...+.++|+|||.+++
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 7999996433222233 457899999999999999443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-06 Score=84.96 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=66.7
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccC
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
..-.+|||+|||.|.|+..|...+. .|+-+|.. ..+.. +-+....++-.++.. .+++||+|++.++|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-PDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-HSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-cccchhhHhhHHHHhhcc-
Confidence 3466899999999999999988766 33333333 22222 222222222222211 258999999999998876
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccH
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
....+|-+|=|+|+|||++++.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4788999999999999999998654
|
... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.9e-05 Score=96.66 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-----------------CeEEEEcCCCCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-----------------PAISAVMGTERLP 448 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-----------------~~~~~v~d~e~LP 448 (796)
+.+|||||||+|.++..|+.. .|+++|+++.++..|+.... ..++ .+.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~-~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY-LNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCcccccccccccccccccccEEEEECchhhh-
Confidence 468999999999999998763 69999999999988874443 3221 245566664322
Q ss_pred CCC--CceeEEEEcCCCccccc---------------------------------ch----HHHHHHHHhhcCCCcEEEE
Q 003776 449 FPG--IVFDAVHCARCRVPWHI---------------------------------EG----GKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 449 fpd--~SFDlVvss~~~l~w~~---------------------------------d~----~~~L~Ei~RVLKPGG~fv~ 489 (796)
+.. ..||+|+|+..++.... |. ..++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 36999999876553210 00 3567778899999999998
Q ss_pred Ee
Q 003776 490 SA 491 (796)
Q Consensus 490 s~ 491 (796)
-.
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 63
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-05 Score=82.57 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-C----CCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-F----PGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-f----pd~SFD 455 (796)
+..+|||||+|+|..+..|+.. .|+++|.++.....|+.. ..+.|+. +.+..+++ +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n-~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRY-YELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3679999999999999988863 689999999888777744 4456664 45555654 3232 1 136899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+.-. +-.+...+|..+.+.|+|||.+++...
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999854 233557889999999999999998644
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=90.65 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CCCCC--CCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERL--PFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~e~L--Pfpd~SFDlVvss 460 (796)
.....+||||||.|.+...++.. .++|+++...-+..+. +.+...++....+.. ++..+ -|+++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 45678999999999999999875 8999999987776665 445566776544433 33222 2778999999998
Q ss_pred CCCcccccc--------hHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHIE--------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+. -+|.-. -+.+|..+.++|||||.|.+.
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 86 788431 268999999999999999987
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-05 Score=81.00 Aligned_cols=101 Identities=22% Similarity=0.366 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCc----hhHHHHhh------C---CeEEEeCChhhHHHHHHHH------------HHHc------C---
Q 003776 389 RTRVVLDVGCGVA----SFGGFLFD------R---GVLTMSFAPKDEHEAQVQF------------ALER------G--- 434 (796)
Q Consensus 389 ~~~~VLDIGCGtG----~~a~~La~------~---~V~gvDiSp~dl~~A~~q~------------A~er------g--- 434 (796)
..-+|+-+||++| +++..|.+ . .|+|+|+++..+..|+.-. .+++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999 45555554 1 7999999999888776321 0011 0
Q ss_pred -------CCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 435 -------IPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 435 -------l~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-.+.+...+....+.+.+.||+|+|-.. +.+.. ....++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0134555554443344578999999764 33333 3368999999999999999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-05 Score=79.58 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-----CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-----fpd~SFD 455 (796)
+.++||+|||++|+.+..|+.. .|+++|+++.....|+ ++..+.|+. +.+...++ +-|+ .+.+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3679999999999999999863 8999999998877776 444555653 55666654 2222 1246899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|+.-. ...+...+|..+.+.|+|||.+++....
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 999864 2335678899999999999999987443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.3e-05 Score=85.87 Aligned_cols=97 Identities=20% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC-CCCCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-PFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L-Pfpd~SFDlVvss~~~l~ 465 (796)
+.+|||+|||+|.++..|+.+ .|+++|+++..+..++ +.+...++ .+.+...+...+ +-....||+|+.....-
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~- 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR- 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC-
Confidence 579999999999999998865 8999999999988877 55555666 356666665432 21124699999986321
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
--...++..+. .++|++.++++-
T Consensus 312 --G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 --GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 11234555554 479999999873
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.6e-05 Score=84.81 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEECCCCchhHHHH--hhCCeEEEeCChhhHHHHHHHHHHHcCCC-eE-EEEcCCCCCCCCCCceeEEEEc
Q 003776 385 AWGKRTRVVLDVGCGVASFGGFL--FDRGVLTMSFAPKDEHEAQVQFALERGIP-AI-SAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 385 ~~~~~~~~VLDIGCGtG~~a~~L--a~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~-~~v~d~e~LPfpd~SFDlVvss 460 (796)
...+++..|||-=||||++.... ...+++|.|++..|+..++..+-. .++. .. ....|+..+||+.++||.|++-
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCCCCCccceEEec
Confidence 33456889999999999876644 456899999999998887755433 3333 22 3334899999999999999995
Q ss_pred CCCccc---cc-c----hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPW---HI-E----GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w---~~-d----~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+-.- .. . ...+|..+.++||+||+++|..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 311000 00 1 25788899999999999999855
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-05 Score=79.65 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++...+. ...+.+..+|...+++
T Consensus 16 ~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc
Confidence 445566665542 34789999999999999999885 799999999988777644322 2235667778877777
Q ss_pred CCCceeEEEEcCC
Q 003776 450 PGIVFDAVHCARC 462 (796)
Q Consensus 450 pd~SFDlVvss~~ 462 (796)
+ .||.|+++..
T Consensus 90 ~--~~d~Vv~NlP 100 (258)
T PRK14896 90 P--EFNKVVSNLP 100 (258)
T ss_pred h--hceEEEEcCC
Confidence 6 4899999864
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.3e-05 Score=80.45 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=60.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
.++.+.+.+.. ..+.+|||||||+|.++..|+++ +|+++|+++.++..++..++ ...+.+..+|...++++
T Consensus 30 i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 44555555542 34679999999999999999886 89999999998887764332 13456777888778776
Q ss_pred CCceeEEEEcC
Q 003776 451 GIVFDAVHCAR 461 (796)
Q Consensus 451 d~SFDlVvss~ 461 (796)
+-.+|.|+++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 43368899875
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.9e-05 Score=79.73 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc------------------
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER------------------ 433 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er------------------ 433 (796)
++.|.+.+|.........+||--|||.|+++-.|+.+ .+.|.++|-.|+-... +....
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccC
Confidence 4556666663222344679999999999999999987 7899999998875543 22211
Q ss_pred ---------C--CC-------------eEEEEcCCCCCCCCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcE
Q 003776 434 ---------G--IP-------------AISAVMGTERLPFPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGF 486 (796)
Q Consensus 434 ---------g--l~-------------~~~~v~d~e~LPfpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~ 486 (796)
. +| .....+|...+..++ ++||+|++.+ ++.-..+.-.+|..|.++|||||+
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCE
Confidence 0 00 000111111121223 6899999876 244444788999999999999998
Q ss_pred EEEEeCCCCCCchH-------HHHHHHHHHHHHHhhcceeeh
Q 003776 487 FIWSATPVYQKLPE-------DVEIWNAMSQLIKAMCWELVS 521 (796)
Q Consensus 487 fv~s~~~~~~~l~E-------l~~~~~~le~l~~~~~W~~v~ 521 (796)
+|=..|..|..-+. +.-.+.++..+...++|..+.
T Consensus 198 WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 198 WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 88555666654432 222356666666666665554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.2e-05 Score=77.37 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEE
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAV 441 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v 441 (796)
....++.++.+.. +..+||+||.+.|+.+..|+.. .++++|+++.+...|+..++ +.|+. +....
T Consensus 46 e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~ 117 (219)
T COG4122 46 ETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLL 117 (219)
T ss_pred hHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEe
Confidence 3445555655543 4789999999999999888764 69999999999888885554 45554 33344
Q ss_pred -cCC-CCCC-CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 442 -MGT-ERLP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 442 -~d~-e~LP-fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+. +.|. +..++||+||.-. +-.+.+.+|..+.++|||||++++..
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 243 2222 4568999999853 23366899999999999999999763
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.7e-05 Score=75.47 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCC-CCC--C-CCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGT-ERL--P-FPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~-e~L--P-fpd~SFD 455 (796)
..+.+||+||||+|..+..++.. .|+..|..+ -+...+ ..+...+ ..+.....+= ..+ . +....||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 35789999999999877776654 899999987 444333 3333322 1222222221 111 1 2346899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++-+ +........++.-+.++|+|+|.++++..
T Consensus 122 ~IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999985 44444567888889999999999887744
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.8e-05 Score=84.36 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcC--
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCAR-- 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~-- 461 (796)
.+.+|||+|||||.++..-+++ .|++++.+... ..| .+.+...++... ...+..+.+-+|-...|+|+|-.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a-~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFA-RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHH-HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4789999999999988877764 89999998733 333 366666776643 33344555555567899999843
Q ss_pred -CCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 462 -CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 462 -~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
| +.+-.-+..+|-.=.+.|+|||.++
T Consensus 138 y~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 2 1111234577777789999999988
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.7e-05 Score=87.04 Aligned_cols=100 Identities=27% Similarity=0.363 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++..+||+|||.|....++.. .++++++.++..+..+..... ..++. ..+.+.+....||++++||.|.+...
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~- 187 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV- 187 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEee-
Confidence 455899999999998888865 389999999987777663333 22222 23355667888999999999999874
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+.+++..++.|++|+|+|||+++..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 555669999999999999999999953
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=77.45 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
..+.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..... ...+.+...|...++++
T Consensus 17 i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 17 VIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 34555555542 34789999999999999999875 799999999888776533321 23456677787777765
Q ss_pred CCcee---EEEEcC
Q 003776 451 GIVFD---AVHCAR 461 (796)
Q Consensus 451 d~SFD---lVvss~ 461 (796)
.|| +|+++.
T Consensus 91 --~~d~~~~vvsNl 102 (253)
T TIGR00755 91 --DFPKQLKVVSNL 102 (253)
T ss_pred --HcCCcceEEEcC
Confidence 577 888874
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-05 Score=78.14 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCC-CChh----HHHhhcc--cccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||+|.++.+|.. .+- ..|+-+|.. ..+. .+-..|+ |-+++.-.+.++. +.+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5699999999988876653 221 234444443 2222 2333444 3444444445554 669999996541
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
..+..++-++-|+|||||++++-+.......+..+++.+-|.+...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 3567888999999999999999888888889999999999986543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=79.10 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=66.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LP 448 (796)
.+++.+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++..++... ...+.+...|+..++
T Consensus 23 ~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 345556655542 35779999999999999999875 79999999999888875544322 123566777765555
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHH
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLEL 477 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei 477 (796)
++ .||+|+++. ++....+.++.-+
T Consensus 99 ~~--~~d~VvaNl---PY~Istpil~~ll 122 (294)
T PTZ00338 99 FP--YFDVCVANV---PYQISSPLVFKLL 122 (294)
T ss_pred cc--ccCEEEecC---CcccCcHHHHHHH
Confidence 54 689999874 4554344444333
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=79.96 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~LPfpd~SFDlVvs 459 (796)
.+++||.||+|.|..+..+++. +|+++|+++..+..++..+.... ...+.+++.|. .-|....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4689999999999999988774 68999999988877764443211 23355666664 223334578999998
Q ss_pred cCCCccc------ccchHHHHH-HHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPW------HIEGGKLLL-ELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w------~~d~~~~L~-Ei~RVLKPGG~fv~s~ 491 (796)
-.. -++ +.-...++. .+.+.|+|||+|++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 111 112346777 8999999999998753
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=76.73 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=74.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL 447 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L 447 (796)
..|...+.. .++.+||+.|.|+|.++.+|+.. .|+..|+.......|+..+. ..|+. +.+...|...-
T Consensus 30 ~~I~~~l~i----~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 30 SYILMRLDI----RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp HHHHHHTT------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG
T ss_pred HHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecc
Confidence 344444443 56899999999999999999863 89999999988888875554 45554 56667776433
Q ss_pred CCC---CCceeEEEEcCCCcccccchHHHHHHHHhhc-CCCcEEEEEeC
Q 003776 448 PFP---GIVFDAVHCARCRVPWHIEGGKLLLELNRVL-RPGGFFIWSAT 492 (796)
Q Consensus 448 Pfp---d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVL-KPGG~fv~s~~ 492 (796)
.|. +..||+|+.-+ ++|..+|..+.++| ||||+|++-.+
T Consensus 105 g~~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 105 GFDEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp --STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 332 36799999864 36778999999999 99999986533
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.7e-05 Score=81.07 Aligned_cols=121 Identities=19% Similarity=0.306 Sum_probs=84.4
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP 436 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~ 436 (796)
|-|-|.+|--...++..++.---| .|+..+.++||+|+|.|-++..++.. .|.+.++|..|..+- ++.+..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL-----~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRL-----KKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHH-----hhcCCc
Confidence 667788887777777665543323 36666789999999999999988876 788888877665333 344433
Q ss_pred eEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCC-CcEEEEEe
Q 003776 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP-GGFFIWSA 491 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP-GG~fv~s~ 491 (796)
+.... ..--.+-.||+|.|.. ++.-|-++..+|..|+.+|+| .|..+++.
T Consensus 157 Vl~~~----ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 157 VLTEI----EWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred eeeeh----hhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 22111 1111223599999964 466677899999999999999 89888764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=73.55 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=53.8
Q ss_pred CCCEEEEECCCCchhHHHHh--h-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLF--D-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+++|||+|||||.++...+ . ..|+++|+++..+..++ +.+.+.+..+.+.+.|..++. ..||.|+.+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 36789999999998665444 3 38999999998887776 556666667788888877665 4588999975
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.5e-05 Score=88.39 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=59.8
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCCCChhH----HHhhcccc----cccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSPDTLPI----IYERGLFG----IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~~~l~~----i~eRGlig----~~~~~ce~f~typrtyDl~Ha 711 (796)
.-..|||+|||.|+++..|..+ .|..+.+.| ..+.. +-.+|+.. +..|.. .+|.-+.+||+|.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s 192 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWS 192 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEE
Confidence 3457999999999999888753 333333222 33332 23345421 122332 23332489999998
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
...+..+. ....+|-||-|+|||||.++|.
T Consensus 193 ~~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 193 MESGEHMP---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCchhccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 76655443 2456899999999999999985
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00041 Score=75.25 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ER 446 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~ 446 (796)
.+.-+++.+.++.+ ++||-||-|.|..++.+++. +++.+||++..+..++..+..-. ...+...+.|. +-
T Consensus 64 Eml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 64 EMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 34455555555544 79999999999999999986 79999999977766653332222 12234455553 22
Q ss_pred CCCCCCceeEEEEcCCCcccccc------hHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIE------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.-...+||+|++-.. .... -..+++.++|+|+|+|.++..
T Consensus 143 v~~~~~~fDvIi~D~t---dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDCEEKFDVIIVDST---DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhCCCcCCEEEEcCC---CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 2322248999998531 1212 268999999999999999976
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=74.78 Aligned_cols=92 Identities=16% Similarity=0.034 Sum_probs=60.7
Q ss_pred EEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcCCCccccc-
Q 003776 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCARCRVPWHI- 468 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~~~l~w~~- 468 (796)
+||-|+=.-|.++..|+...++.+ -+....+.+..+.+...+++.. ........+ | +.+|+|+.- ++-..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~--~-~~~d~vl~~---~PK~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDSTADY--P-QQPGVVLIK---VPKTLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecccccc--c-CCCCEEEEE---eCCCHH
Confidence 799999999999999997666544 2333445555566666676532 122212333 3 459998874 23222
Q ss_pred chHHHHHHHHhhcCCCcEEEEE
Q 003776 469 EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....|..+.++|.||+.++..
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEE
Confidence 3467888899999999998754
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=84.47 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEE
Q 003776 390 TRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
...|||||||+|-++...++ ..|++++-++......+ +.....+. .+.++..+++.+..| ..+|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 56899999999988755443 27999999986554433 33334444 467777888888766 48999999
Q ss_pred cC-CCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 460 AR-CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 460 s~-~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
=. +.+....-.+.+|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 42 222333344678999999999999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.5e-05 Score=80.65 Aligned_cols=94 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhcccc---cc-cccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGLFG---IY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGlig---~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+.|||+|||.|+++..|... ++-|.-+-+ ++.++..+- ++|+-+ ++ .|... . .+|.+||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHH
Confidence 36899999999998887643 232222322 224444333 335422 22 23321 1 24678999998887
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|....+ ...+|-++.|+|+|||++++.+
T Consensus 77 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIKD---KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 766543 5788999999999999999875
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.2e-05 Score=85.13 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=61.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcccc---ccc-ccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLFG---IYH-DWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~-~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++..|..... .|+-+|.. ..+..+-+ .|+.. +++ +..+--+..+.+||+|.+..+|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999987653 34444443 44444333 34422 111 2221112235899999988887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+ ...+|-++-|+|+|||+++|-
T Consensus 123 ~~~~~---~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVAD---PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 65542 356899999999999999874
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=76.47 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcccccccccccccCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||.|.++++|..+ |-. .|+-+|.. .-|.. +-..|+-+.++ +...++..+..||+|-++-.|-...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999988765 311 12223322 11211 11223333222 2233444468899999877663211
Q ss_pred --CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 --KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 --~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..-....++-++-|.|+|||.++|-
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1123467899999999999999874
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00064 Score=68.77 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|+||||+|..+.+|++. -+.++|++|..+. +...-|+..+..+..+..|...- +..++.|+++.+..++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 678999999999999999875 4789999996654 34466776666655555553211 2238899999887655
Q ss_pred ccccc--------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIE--------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d--------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+-... ...+|.++..+|.|.|.|++.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 53321 125677788899999999976
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.60 E-value=2.9e-05 Score=83.01 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhhc-------c--cccccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYERG-------L--FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG-------l--ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.++..|..+ +-+ +|+-+|-. .-|..+-+|. . |-+.+.=.+.+|.-+.+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 46999999999998877653 111 23333433 4555554442 1 122222234555334799999987
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+..+. ....+|-||-|+|||||++++.|
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766543 45778999999999999998864
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=75.29 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=70.4
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCCC------CCCcee
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLPF------PGIVFD 455 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LPf------pd~SFD 455 (796)
..+||+||+++|..+.+|+.. .|+++|.++.....|+..+. +.|+. +.+..+++ +.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 679999999999988888753 79999999987777764444 44543 45555554 33331 136899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|+.-. +......+|..+.+.|+|||++++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999854 23345788888899999999999763
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00033 Score=70.96 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh--C--C---------eEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--R--G---------VLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGI 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--~--~---------V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~ 452 (796)
.++..|||--||+|++....+. . . ++|.|+++.++..++ +.+...++. +.+...|+..+|+.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccC
Confidence 3578999999999998754432 2 3 679999999998887 455556654 4566778899998889
Q ss_pred ceeEEEEcCCCccccc------ch----HHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWHI------EG----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~~------d~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
++|+|+++. +|-. +. ..++.++.|+|+|..+++++
T Consensus 106 ~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 106 SVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp BSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999985 3332 11 36688899999995555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.1e-05 Score=76.49 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.++.+|..+. ..|+-+|.. ..+.. +-..|+ -....|.. .++ ++..||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccccc
Confidence 479999999999998887653 234444543 33332 233453 12222322 222 3568999988777643
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. +.-.+..++-++.|+|+|||++++
T Consensus 107 ~-~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L-QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 333567889999999999999554
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=76.04 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcC---CCeEEEEcCCCCC--CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG---IPAISAVMGTERL--PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~erg---l~~~~~v~d~e~L--Pfpd~SFDlVvs 459 (796)
+.+.+|||...|-|+++...+++ .|+.++.+|.-+..|.+. --.++ ..+..+.+|+..+ .|++.+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccC-CCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 45889999999999999888775 788888888655443311 00111 1234455554222 478999999987
Q ss_pred cCCCccc--ccchHHHHHHHHhhcCCCcEEEE-EeCCCCCCchHHHHHHHHHHHHHHhhcceeeh
Q 003776 460 ARCRVPW--HIEGGKLLLELNRVLRPGGFFIW-SATPVYQKLPEDVEIWNAMSQLIKAMCWELVS 521 (796)
Q Consensus 460 s~~~l~w--~~d~~~~L~Ei~RVLKPGG~fv~-s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~ 521 (796)
-...+.. ...-..+.+|++|+|||||.++= ...|+.. ..-+.....+....+..+|..+.
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--yrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--YRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--cccCChhHHHHHHHHhcCceeee
Confidence 5422222 12346889999999999998773 3344322 22222333444444445555444
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=5.2e-05 Score=79.89 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cc-cccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FG-IYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
....|||+|||.|.++..|..... .|+-+|-. ..+..+-+|+- +. +..|. +.++..+.+||+|-++..+. |.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-WC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-hc
Confidence 456799999999999888865432 23333332 44555555531 11 22333 44554457999998765543 22
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .+..+|-||-|+|||||++++.
T Consensus 117 ~--d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 117 G--NLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred C--CHHHHHHHHHHHcCCCeEEEEE
Confidence 2 4567899999999999999986
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=71.32 Aligned_cols=119 Identities=17% Similarity=0.272 Sum_probs=78.1
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCe--EEEEcCC--
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMGT-- 444 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~--~~~v~d~-- 444 (796)
..|.+.+..+......-+||||.||.|....-.+.. .|.-.|+++..+...+ +.++++|+.. .+...|+
T Consensus 121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCC
Confidence 334443333333345779999999999865544432 6888999998887776 6677888764 5666654
Q ss_pred -CCCCCCCCceeEEEEcCCCcccc-cc---hHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 445 -ERLPFPGIVFDAVHCARCRVPWH-IE---GGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 445 -e~LPfpd~SFDlVvss~~~l~w~-~d---~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
..+.--.-..++++.+. ++.. .| ....|..+.++|.|||+++++..|-+.
T Consensus 200 ~~~l~~l~p~P~l~iVsG--L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSG--LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred HhHhhccCCCCCEEEEec--chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 22221123468888775 3333 33 245788999999999999988544433
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=2.4e-05 Score=71.39 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=59.4
Q ss_pred cccccCccccceeeeccC--CCeEEEEeecCCCCCChhHHH----hhcccc----cccccccccCCCCcccccccccc-c
Q 003776 646 NVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSPDTLPIIY----ERGLFG----IYHDWCESFSTYPRTYDLLHADH-L 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~--~~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~~ce~f~typrtyDl~Ha~~-~ 714 (796)
.|||+|||.|.++.+|.. ...=|..|=+.. ..+.++- ++++-. +..|+ ......+..||+|.+.+ .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence 589999999999999987 443333333322 2333222 233322 22344 22244455699999888 2
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+-+......+|-.+-+.|||||+++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222344567888999999999999974
|
... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=6.7e-05 Score=80.41 Aligned_cols=100 Identities=26% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
.+..+||+|||.|-....-....+++.|++...+..+ +..|.. ...++|+..+|+++.+||.+++.. .+||..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~a-----k~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhls 117 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGA-----KRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLS 117 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhcccc-----ccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhh
Confidence 4789999999999665432223578888876554333 233332 466788899999999999999975 355443
Q ss_pred ---chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 469 ---EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 469 ---d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
....++.++.|+|||||..++.+-...
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 347899999999999998766543333
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00036 Score=78.86 Aligned_cols=97 Identities=18% Similarity=0.069 Sum_probs=70.5
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
..+|||++||+|.++..++.. .|+++|+++..+..++ +.+...++.. .+...|+..+......||+|+... .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C
Confidence 458999999999999998653 6999999998887776 4445455553 355556543321145799999864 1
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
-.+..+|....+.++|||+++++.+
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2345777887888999999999854
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=66.80 Aligned_cols=98 Identities=13% Similarity=-0.050 Sum_probs=65.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-C--CCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-F--PGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-f--pd~SFDlVvss 460 (796)
+.+|||++||+|.++..++.+ .|+++|.++..+..++ +.+...++. +.+...|. ..+. + ....||+|+..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 679999999999999999876 6999999998877666 444444443 45566665 2222 1 12248888886
Q ss_pred CCCcccccchHHHHHHH--HhhcCCCcEEEEE
Q 003776 461 RCRVPWHIEGGKLLLEL--NRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei--~RVLKPGG~fv~s 490 (796)
..+- . .....++..+ ..+|+++|.+++.
T Consensus 129 PPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 129 PPFF-N-GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred cCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 5321 1 1233444444 3479999998876
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=69.40 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=70.8
Q ss_pred HhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH---H-cCCCeEEEEcCCCCCCCCCC
Q 003776 379 ESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL---E-RGIPAISAVMGTERLPFPGI 452 (796)
Q Consensus 379 e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~---e-rgl~~~~~v~d~e~LPfpd~ 452 (796)
-+.|.+.+ +.+++||=||.|.|..++.+++. +|+.+||++..+..++.-+-. . ....+.+.. ... .-..+
T Consensus 63 vHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~ 138 (262)
T PRK00536 63 AHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIK 138 (262)
T ss_pred HHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCC
Confidence 34443333 45799999999999999999987 799999999887666532211 1 112222222 111 11236
Q ss_pred ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|+.-. + ....+++.++|+|+|||.|+....
T Consensus 139 ~fDVIIvDs--~----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 139 KYDLIICLQ--E----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cCCEEEEcC--C----CChHHHHHHHHhcCCCcEEEECCC
Confidence 899999863 1 357888999999999999997643
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.43 E-value=8.9e-05 Score=75.21 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcc--cccc-cccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
=++|||+|||.|.++..|... +- ..|+-+|.. ..+.+ +-+.|+ |-++ .|.. .++ ...+||+|-+..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc-ccCCccEEEehh-
Confidence 357999999999887765421 11 123333333 22222 223354 2222 2222 222 357899998654
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCC-ceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQ-WEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~-W~~~~ 766 (796)
+ ..+..++-.+.|+|||||.+++........++..+.+++| |....
T Consensus 118 ~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 118 L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 1 2466778888999999999999877777777777776644 44443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=6e-05 Score=83.15 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhhcc-----cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYERGL-----FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+.|||+|||.|.|+.+|.... -.|.-|=|.... .+...+ .+.+ |-+.+.=-+.+|. +.+||+|++.+++-.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998887653 234333332111 111111 1110 1111111134454 789999998887653
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-....+|-++-|+|||||.+|+.
T Consensus 202 ---~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 ---RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 335677899999999999999985
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=6.3e-05 Score=77.02 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=60.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcc---cccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-.|||+|||.|.++..|.++.. +|+-+|.. ..+.. +-.+|+ -.+..|+.. ++ ++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecchh
Confidence 4699999999999999987632 33333443 22322 334454 223344432 22 367899999877763
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. ...-.+..+|-+|-|+|+|||++++
T Consensus 107 ~-~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 F-LEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h-CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 3344567889999999999999654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=5.6e-05 Score=80.94 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc----ccc-cccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG----LFG-IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||+|+++..|... .. .|+-+|.. ..+..+-+|- .|- +..|.. ..+.-+.+||+|++..+|-
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCCCCCeEEEEEhhhHH
Confidence 346999999999998887543 22 23333322 4444444432 111 122222 2222147999999865543
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+ .......+|-++-|+|+|||+|++.|-
T Consensus 129 h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 32 122456789999999999999999753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=64.37 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCch-hHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC-
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVAS-FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP- 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~-~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp- 450 (796)
+.|.+.++. ..+.+|||||||.|. ++..|.+. .|+++|+++..+ +.+++.++ ...+.|...-.+.
T Consensus 6 ~~l~~~~~~----~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~--~~v~dDlf~p~~~~ 74 (134)
T PRK04148 6 EFIAENYEK----GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGL--NAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHhccc----ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCC--eEEECcCCCCCHHH
Confidence 445565554 346799999999996 88888875 899999998643 44455554 3455554333322
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
-..+|+|++.+. ..+....+.++.+-+ |.-++|. ++..+
T Consensus 75 y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~-~l~~e 113 (134)
T PRK04148 75 YKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK-PLSGE 113 (134)
T ss_pred HhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE-cCCCC
Confidence 356999999873 335566666666654 4445655 54444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=72.53 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcC-C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCAR-C 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~-~ 462 (796)
.++.|||+|||+|.++.+.+.+ +|.+++.+. |...|+. +.....+.-. .+-+..+++.+| +..|+|++-. .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4789999999999877766653 899999876 5555542 2222333322 222345776666 6799999954 1
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.+.............+|.|||.|.++
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 12222222334445679999999987
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=67.63 Aligned_cols=92 Identities=27% Similarity=0.217 Sum_probs=64.8
Q ss_pred EEEEECCCCchhHHHHh----hCCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 392 VVLDVGCGVASFGGFLF----DRGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La----~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++||||+|.|.-+..|+ ..+++-+|....-..--+ ..+.+.++. +......++. +.....||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 89999999997666664 347999999876543332 445566777 4444444555 55568899999953 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....++.-+.+.|+|||.+++-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEE
Confidence 25678888899999999999875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00083 Score=71.49 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEc
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVM 442 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~ 442 (796)
..|.+.|.. ++.... +.+.+||-||-|.|..+..|++. .|+++|+++..+..++.-+.... ...+..+..
T Consensus 60 ~~y~e~l~h-~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 60 FIYHEMLVH-PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp HHHHHHHHH-HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred HHHHHHHhh-hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 455555443 332222 35889999999999999999875 69999999988877765444332 234566666
Q ss_pred CCCC-CCCCCC-ceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 443 GTER-LPFPGI-VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 443 d~e~-LPfpd~-SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|... |--... .||+|+.-.. -+... -...+++.+.++|+|||.|++..
T Consensus 138 Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 138 DGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp THHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6421 211223 8999998542 12222 12689999999999999999764
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00013 Score=73.67 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=68.6
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhccccccccccc-ccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGLFGIYHDWCE-SFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~~ce-~f~typrtyDl~Ha~~~~s 716 (796)
-++|||+|||.|.++.++..+ |- ..|+-+|.. ..+..+- ..|+-. +.-.+. ....++..||+|.+.+.+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 457999999999998877543 21 122223332 2233222 123211 110111 112345789999866532
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEV 764 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~ 764 (796)
..+..++-++-|+|+|||++++.. ......++.++++...|..
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 346778889999999999999975 4556777888888888753
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=8.6e-05 Score=78.70 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=64.0
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.-..|||+|||.|.++.+|..+ |- ..|+=+|.. ..+..+-++++-=+..|- +.++ ...+||+|++..+|-...
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~- 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP- 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC-
Confidence 3467999999999999888764 21 123333333 566666677642222333 2232 246899999988876443
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++-|+|+|||++++.
T Consensus 104 --d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 --EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --CHHHHHHHHHHhCCCCcEEEEE
Confidence 3467899999999999999985
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00036 Score=70.01 Aligned_cols=117 Identities=11% Similarity=0.182 Sum_probs=71.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-cc-cccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-FG-IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+.|||+|||.|.++.+|..... .|+-+|-. ..+..+-+ .|+ +- +..|+.+. .+.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4599999999999988876532 23333332 22322211 122 11 22344332 2468999987655432
Q ss_pred cc------------------CCcchHHHHHhhcccccCCcEEEEeccHHH-HHHHHHHHhcCCceEEEe
Q 003776 718 IK------------------KRCNLVAVVAEVDRILRPEGKLIVRDDVET-INELESMVKGMQWEVRMT 767 (796)
Q Consensus 718 ~~------------------~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~-~~~~~~~~~~l~W~~~~~ 767 (796)
.. .++.+..+|-++.|+|+|||.+++-..... ...+..+++..-|.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 21 123467889999999999999998654433 555666666666766554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0025 Score=70.40 Aligned_cols=102 Identities=11% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchhHHHHhhC--------CeEEEeCChhhHHHHHHHHHHHcC--CCeEEEEcCC----CCCCC--CCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGT----ERLPF--PGIV 453 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--------~V~gvDiSp~dl~~A~~q~A~erg--l~~~~~v~d~----e~LPf--pd~S 453 (796)
+..|+|+|||.|.=+..|++. .++++|+|...+..+..+...... +.+.-+.++. ..||- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 568999999999866655442 589999999999888766652222 2222244443 22322 2234
Q ss_pred eeEEEEcCCCccccc--chHHHHHHHHh-hcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHI--EGGKLLLELNR-VLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~--d~~~~L~Ei~R-VLKPGG~fv~s~ 491 (796)
..+|+...+.+.... ....+|+++++ +|+|||.|++..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 677777554454433 33588899999 999999999874
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=68.46 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=69.4
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh--C--CeEEEeCChhhHHHHHHHHHHHcCCC--e
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALERGIP--A 437 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~--~--~V~gvDiSp~dl~~A~~q~A~ergl~--~ 437 (796)
..|..+-..-...|.+.+. ++.+|||+-||.|.|+..+++ + .|+++|+.|..+...+ +.++..++. +
T Consensus 82 vyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~-~Ni~lNkv~~~i 154 (200)
T PF02475_consen 82 VYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK-ENIRLNKVENRI 154 (200)
T ss_dssp S---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH-HHHHHTT-TTTE
T ss_pred EEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH-HHHHHcCCCCeE
Confidence 3455544444455555433 478999999999999999987 3 6999999997665554 555555555 3
Q ss_pred EEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 438 ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 438 ~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.....|...++. ...||-|++++ .. .-..+|..+.+++|+||.+-
T Consensus 155 ~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 155 EVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred EEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 456677666554 68999999975 21 23468888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.33 E-value=4.7e-05 Score=82.15 Aligned_cols=97 Identities=23% Similarity=0.410 Sum_probs=63.4
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCCCChhH----HHhhcccccccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPI----IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
-.|||+|||.|||+-++..+ .+-|.-|.. ++.|+.. |-++||-+...--+.-|..++-+||-|=+-++|-...
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 37999999999999999877 765555543 3355553 5678875544433444445555899888777776653
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+=.+..++-.+.|+|+|||.++|.
T Consensus 142 -~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 -RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred -hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 345667899999999999999974
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00028 Score=74.91 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=71.5
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-ccccccccccccCCCCccccccccccccccccCC
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR 721 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r 721 (796)
-..|||+|||.|..+.++.....- .|+-+|-. ..+..+-++- +-|+- +.. .++.-...||+|.|+.+..
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~-~~~-~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE-LNV-YLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC-ceE-EEccCCCCcCEEEEcCcHH-----
Confidence 357999999999888777654321 12223332 3333333321 11110 000 0111112699998654322
Q ss_pred cchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
.+..++-++-|+|||||++|++... .....+...++...+.+......+.=..++++|
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 2446677999999999999998543 345667777777778776543333223444444
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00088 Score=72.18 Aligned_cols=128 Identities=19% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCccccccHHHHHHHHHHhCcccccCC--CCCEEEEECCCCc----hhHHHHhhC---------CeEEEeCChhhHHHHH
Q 003776 362 GGTQFKNGALHYIDFIQESVPDVAWGK--RTRVVLDVGCGVA----SFGGFLFDR---------GVLTMSFAPKDEHEAQ 426 (796)
Q Consensus 362 ggt~F~~~a~~yid~L~e~Lp~i~~~~--~~~~VLDIGCGtG----~~a~~La~~---------~V~gvDiSp~dl~~A~ 426 (796)
..|.|.....++..+-...+|.+.... ..-+|+-+||+|| ++|..|.+. .|+|+|++...|..|+
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 345566666666544444455332211 3679999999999 344444331 7899999999888876
Q ss_pred HHH----HHHcCCC-------------------------eEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHH
Q 003776 427 VQF----ALERGIP-------------------------AISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLL 475 (796)
Q Consensus 427 ~q~----A~ergl~-------------------------~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~ 475 (796)
.-. ...++++ +.+...+...-++..+.||+|+|-.. +.+.. ....++.
T Consensus 147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~ 225 (268)
T COG1352 147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILR 225 (268)
T ss_pred cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHH
Confidence 321 1112221 11222222111214467999999653 44433 3368999
Q ss_pred HHHhhcCCCcEEEEE
Q 003776 476 ELNRVLRPGGFFIWS 490 (796)
Q Consensus 476 Ei~RVLKPGG~fv~s 490 (796)
.++..|+|||+|++.
T Consensus 226 ~f~~~L~~gG~LflG 240 (268)
T COG1352 226 RFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHhCCCCEEEEc
Confidence 999999999999986
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=8.9e-05 Score=76.91 Aligned_cols=95 Identities=14% Similarity=0.279 Sum_probs=57.1
Q ss_pred ccccccCccccceeeeccCC--C-eEEEEeecCCCCCChhHHH----hhcc--cccc-cccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S-VWVMNVISIDSPDTLPIIY----ERGL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~-vwvmnv~p~~~~~~l~~i~----eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++..|.+. + .-|..|-+.. ..+..+- ..++ +-++ .|. +.++.-+.+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEecc
Confidence 46999999999999888643 1 2233332221 2332222 2232 1122 222 223322379999998766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|.... ....+|-|+-|+|+|||++++.+
T Consensus 124 l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNVP---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccCC---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 54333 24567889999999999999864
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=77.29 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=66.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccccccccccccc-CCCCccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESF-STYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f-~typrtyDl~Ha~~~~s~~ 718 (796)
.+|||+|||.|.++.++.....- .|+-+|-. ..+..+.++ |+-..+...+... +..+..||+|+++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 57999999999987776554321 23333333 334333332 2211122222212 22246899999865432
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~ 766 (796)
.+..++-++-|+|+|||++|++.-. +-...+...+++. |++..
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 2456788999999999999997533 2445566655555 76643
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00015 Score=74.61 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc--cc-cccccccccCC-C-Ccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL--FG-IYHDWCESFST-Y-PRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl--ig-~~~~~ce~f~t-y-prtyDl~Ha 711 (796)
.-++|||+|||.|.++..|... |- .+|+-+|-. ..+..+- ..|+ +- +..|+.+.++. + +.+||+|..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3478999999999998887553 21 122222322 2232222 1233 11 22333233441 3 578999975
Q ss_pred ccccccc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 712 DHLFSKI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 712 ~~~~s~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.... .| ..+.....+|-++-|+|+|||+|+|. +....+..+...+..--|.+..
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 4322 12 12233577899999999999999996 6666776777766666676663
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00013 Score=74.92 Aligned_cols=98 Identities=24% Similarity=0.323 Sum_probs=61.4
Q ss_pred ccccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhh--cccccc----cccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYER--GLFGIY----HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eR--Glig~~----~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++..|...- -- -+|+-++.. ..+..+-.+ +..... .|.. .++.-+.+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEech
Confidence 34579999999999988876531 00 022223332 455555555 111111 1221 12222468999999888
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|..+.+ ...+|-++-|+|+|||++++.+
T Consensus 97 ~~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 876653 5667999999999999998753
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=68.26 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCCchhHHHHhh---C---CeEEEeCChhhHHHHHHHHHHHc----------CCCeEEEEcCCCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD---R---GVLTMSFAPKDEHEAQVQFALER----------GIPAISAVMGTERLPFPG 451 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~---~---~V~gvDiSp~dl~~A~~q~A~er----------gl~~~~~v~d~e~LPfpd 451 (796)
.++.+.||+|.|+|+++..++. . .++||+.-+..+..+....-..- .....+.+.|....--+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 3588999999999998877663 1 34888887766555543222111 112345566655555556
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..||.||+-. ....+..++...|+|||.+++-
T Consensus 161 a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 7899999974 2346667888899999999973
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00013 Score=78.97 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=60.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChh----HHHhhcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.++.+|..+.. .|+-+|.. .-+. .+-++|+ --+..|... ++ .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhh
Confidence 4799999999999999877653 33444443 2233 2334565 111222222 12 2688999998887754
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. ++-.+..+|-+|-|+|+|||++++
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 344677899999999999999655
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0023 Score=64.13 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-----CCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-----FPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-----fpd~SFDlV 457 (796)
..+.-||++|.|||.++.+++.+ .+++++.++...+.-. ++.....++.+|+..|. +...-||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-----~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-----QLYPGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-----HhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence 45679999999999999999986 7899999886543332 22233344555554442 567789999
Q ss_pred EEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 458 HCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 458 vss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
+|...++.... -.-..|..+...|++||.|+-
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99764333322 235778889999999999883
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=73.79 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCC-CCCCceeEEE--
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP-FPGIVFDAVH-- 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LP-fpd~SFDlVv-- 458 (796)
.++.+|||++||.|.=+.+|+.. .|++.|+++.-+...+ ..+.+.|+.. .....|...++ .....||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46789999999999877777653 6999999997776655 4555567764 34445555442 2236799999
Q ss_pred --EcCC-Ccc--------ccc-c-------hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 --CARC-RVP--------WHI-E-------GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 --ss~~-~l~--------w~~-d-------~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
|+.. .+. |.. + ...+|..+.+.|||||+++.++...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 4421 111 111 0 1367888999999999999886543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00026 Score=63.66 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=44.4
Q ss_pred cccCccccceeeeccCC--CeEEEEeecCCCCCCh----hHHHhhcc--cccc-cccccccCCCC-cccccccccccccc
Q 003776 648 MDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTL----PIIYERGL--FGIY-HDWCESFSTYP-RTYDLLHADHLFSK 717 (796)
Q Consensus 648 mDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l----~~i~eRGl--ig~~-~~~ce~f~typ-rtyDl~Ha~~~~s~ 717 (796)
||+|||.|.+..+|+.. ..=+.-+=+.. .-+ +-+.+.+. +-.. ..--..+...+ .+||+|.+.++|..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999876 32222222221 222 12222221 1111 11112223333 59999999999988
Q ss_pred ccCCcchHHHHHhhcccccCCcEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKL 741 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~ 741 (796)
+ =.+..+|-.+-|+|+|||.+
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 7 35668899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00014 Score=74.71 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=59.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc---ccccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG---LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
+.|||+|||.|.|...|...-- -..|+-+|.. ..+..+..+. +.-+..|. +.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhcc-
Confidence 5699999999999988865420 0012222222 2333333332 22222333 23444468999999888775332
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++.|+|+|||++++.
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEE
Confidence 4667899999999999999986
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=74.22 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=64.4
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CC-CC--------------C
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-FP--------------G 451 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LP-fp--------------d 451 (796)
.+|||++||+|.++..|++. .|+++|+++.++..++ +.+...++. +.+...++.. ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988874 8999999999998877 555556664 5566666533 21 10 1
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..||+|+.....-- -...++..+. +|++.++++-.
T Consensus 287 ~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeC
Confidence 25899998653211 1234444443 47888888843
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00019 Score=79.06 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=59.5
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCC-CChhHHHh----hcccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSP-DTLPIIYE----RGLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~-~~l~~i~e----RGlig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
=+.|||+|||.|.++.+|..... -|.-|=|.... .+...+-. .+.+.+..-=-+.++. +.+||+|-+.+++-.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 36899999999999888766532 34444443321 12111111 1111111100123333 348999998888754
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ -....+|-++-|+|||||.+||.
T Consensus 201 ~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 35678899999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=67.26 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCEEEEECCCCchhHHHHhh-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC---CCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFD-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF---PGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf---pd~SFDlVvss~~~l~ 465 (796)
.-++|||||=.......-.. ..|+.||+.+.. . .+...|....|. +.+.||+|++++. +.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~-----------~----~I~qqDFm~rplp~~~~e~FdvIs~SLV-LN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH-----------P----GILQQDFMERPLPKNESEKFDVISLSLV-LN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC-----------C----CceeeccccCCCCCCcccceeEEEEEEE-Ee
Confidence 36999999875543322222 269999997621 1 234566555555 3679999999872 44
Q ss_pred cccch---HHHHHHHHhhcCCCcE-----EEEEeC
Q 003776 466 WHIEG---GKLLLELNRVLRPGGF-----FIWSAT 492 (796)
Q Consensus 466 w~~d~---~~~L~Ei~RVLKPGG~-----fv~s~~ 492 (796)
+.+++ ...++.+++.|+|+|. |++..|
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 55544 7899999999999999 776644
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0022 Score=64.38 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=60.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC-----
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG----- 443 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d----- 443 (796)
+..+.+....+. ...+.+||||||++|.|+..+..+ .|+|+|+.+.... .+ +.....|
T Consensus 9 L~ei~~~~~~~~-~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~--~~~i~~d~~~~~ 76 (181)
T PF01728_consen 9 LYEIDEKFKIFK-PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QN--VSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TT--EEBTTGGGEEEE
T ss_pred HHHHHHHCCCCC-cccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cc--eeeeecccchhh
Confidence 444555555332 124689999999999999999876 6999999874110 11 1111111
Q ss_pred ----C-CCCCCCCCceeEEEEcCCCcccc----cch-------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 444 ----T-ERLPFPGIVFDAVHCARCRVPWH----IEG-------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 444 ----~-e~LPfpd~SFDlVvss~~~l~w~----~d~-------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
. ..++-....||+|+|-.+ .... .+. ...|.-+...|||||.|++-......
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred HHHhhhhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 1 111212368999999641 1111 111 23344456789999999987544333
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0032 Score=69.56 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfpd~SFDlVvss~~~l~ 465 (796)
....++|+|.|.|..+..+... +|-++++....+-.++..++ .| +..+.++. ..+|-. |+|++-.++-|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P~~----daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTPKG----DAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCCCc----CeEEEEeeccc
Confidence 3578999999999999988875 78899998877666654443 33 33444443 456633 59999887666
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 466 WHI-EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 466 w~~-d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|.. +...+|++++..|+|||.+++.....+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 664 668999999999999999998755333
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00018 Score=81.31 Aligned_cols=94 Identities=19% Similarity=0.340 Sum_probs=62.0
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
..|||+|||.|+++..|... ++- |+-++-. .++..+-+|. + ++ .-.+..+...+.+||+|.+..+|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg- 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVG- 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCC-
Confidence 46999999999999888753 432 3333332 5666665543 2 11 111222222357899999888776432
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.-.+..+|-++.|+|+|||++++.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234567899999999999999985
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0002 Score=79.13 Aligned_cols=94 Identities=12% Similarity=0.222 Sum_probs=64.9
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----c---cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||.|.|+..|.... .+|+-+|.. ..+.++-.+. + |-.++.=.+.++..+.+||+|=+.++|..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 69999999999998887643 244445554 4555554442 2 11222222445544579999998888766
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ....+|-++-|+|||||.++|..
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 55 35678999999999999999874
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=71.25 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=70.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----------CCeEEEeCChhhHHHHHHHHHHHcCCCe---
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------RGVLTMSFAPKDEHEAQVQFALERGIPA--- 437 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~gvDiSp~dl~~A~~q~A~ergl~~--- 437 (796)
...++|.+++.. ..+.+|||..||+|.|...+.. ..++|+|+++..+..++..... +++..
T Consensus 33 ~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~ 107 (311)
T PF02384_consen 33 EIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNI 107 (311)
T ss_dssp HHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGC
T ss_pred HHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccc
Confidence 445566666542 4567899999999998777654 2799999999887777655543 33222
Q ss_pred EEEEcCCCCCC-CC-CCceeEEEEcCCCccc--cc-----c------------h-HHHHHHHHhhcCCCcEEEEEeC
Q 003776 438 ISAVMGTERLP-FP-GIVFDAVHCARCRVPW--HI-----E------------G-GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 438 ~~~v~d~e~LP-fp-d~SFDlVvss~~~l~w--~~-----d------------~-~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.....+.-..+ +. ...||+|+++..+... .. + . ..++..+.+.|++||++++..+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 24455543222 22 4789999998643322 10 0 0 2467889999999999887654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0052 Score=65.89 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=70.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
++.|.+.+.. .++.+||+||+|.|.++..|+++ .|+++++++.++..-+...+ .......+.+|+...+|+.
T Consensus 19 ~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 4555555543 34789999999999999999986 89999999977655443332 2234566778887777775
Q ss_pred C-ceeEEEEcCCCcccccchHHHHHHHHhhcCC
Q 003776 452 I-VFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 452 ~-SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP 483 (796)
. .++.|+++ +++....+-+++-+..-..+
T Consensus 93 l~~~~~vVaN---lPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 93 LAQPYKVVAN---LPYNISSPILFKLLEEKFII 122 (259)
T ss_pred hcCCCEEEEc---CCCcccHHHHHHHHhccCcc
Confidence 3 68999997 56666666665555555444
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=72.60 Aligned_cols=93 Identities=17% Similarity=0.101 Sum_probs=62.6
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CC-------C---C-----C
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-------F---P-----G 451 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LP-------f---p-----d 451 (796)
.+|||+|||+|.++..|++. .|+++|+++.++..++ +.+...++. +.+...+... ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999998874 8999999999998887 555556664 4566666433 11 1 0 1
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..||+|+.....-- -...++..+ ++|++.++++
T Consensus 278 ~~~d~v~lDPPR~G---~~~~~l~~l---~~~~~ivYvs 310 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---LDPDTCKLV---QAYERILYIS 310 (353)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHH---HcCCcEEEEE
Confidence 23799988652111 123444444 3489999987
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0069 Score=68.63 Aligned_cols=113 Identities=17% Similarity=0.047 Sum_probs=80.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCC-CCCC---CCCCceeEEEE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGT-ERLP---FPGIVFDAVHC 459 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~-e~LP---fpd~SFDlVvs 459 (796)
+.+|||+=|=||.|+.+.+.. .|+.||+|...+.-|+.++. -.|+. +.+++.|+ .-|. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999999888763 89999999999988884444 45543 45666764 2222 22348999998
Q ss_pred cCCCcccc------c--chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHH
Q 003776 460 ARCRVPWH------I--EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503 (796)
Q Consensus 460 s~~~l~w~------~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~ 503 (796)
-...+.-. . +...++..+.++|+|||.+++++....-.......
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 54222211 1 34678889999999999999986655555444433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00033 Score=74.12 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=58.7
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-ccccc-cccccccCCCCcccccccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-LFGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-lig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..-.+|||+|||.|.|+..|... |- -+|+-+|.. ..+..+-++- -+.++ .|-.. +. .+.+||+|+++.+|..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIAS-WQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhc-cC-CCCCccEEEEccChhh
Confidence 34578999999999999888653 11 122222322 2333332221 01111 12221 21 2468999999888764
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. ....+|-+|-|+|||||++++.
T Consensus 106 ~~---d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 LP---DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 43 3567899999999999999985
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00075 Score=69.97 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=66.9
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhccccccccccc---------ccCCCCccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCE---------SFSTYPRTYDLLH 710 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce---------~f~typrtyDl~H 710 (796)
..|||+|||+|+|...|.+. .|..+-+.|... + .|+.-+-.|+.. ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 46999999999997766543 244443333111 1 122222333332 233 36789988
Q ss_pred cccccccccCC--------cchHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee-ccCCceEE
Q 003776 711 ADHLFSKIKKR--------CNLVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY-SKDKEGLL 776 (796)
Q Consensus 711 a~~~~s~~~~r--------C~~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~-~~~~e~~l 776 (796)
++......... +.+..+|-++=|+|+|||.|++.. ..+++..++.......+-.-... ....|.++
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~ 202 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 202 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEE
Confidence 75432211111 113568899999999999999942 23333333333222222111111 12468888
Q ss_pred EEEe
Q 003776 777 CVEK 780 (796)
Q Consensus 777 ~~~K 780 (796)
||..
T Consensus 203 ~~~~ 206 (209)
T PRK11188 203 VATG 206 (209)
T ss_pred Eeec
Confidence 8864
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00024 Score=76.27 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=55.4
Q ss_pred cccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHHHhhc-cccc-ccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPIIYERG-LFGI-YHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i~eRG-lig~-~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-.+|||+|||.|.+++.|.+. + +-...|+-+|-. ..+..+-.|. -+.+ .+|. ..+|.-+.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEE--ecC--
Confidence 356999999999999888643 1 101234445544 5666665553 1111 1222 223322479999984 232
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. ..+-|+.|+|+|||++|+.
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEE
Confidence 1 2357999999999999986
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00029 Score=76.65 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhh-ccccccccccccc--CCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESF--STYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f--~typrtyDl~Ha~~~~s 716 (796)
-+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-.| +++.+..|.+.+. ....-++|+|=++-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 36999999999998888764 3666544432222344554444 5788888877543 111246788754332
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..=....+++++.|+|+|||+|+|.
T Consensus 212 ---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 ---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1112335678999999999999984
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00087 Score=67.81 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=66.5
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhccccccccccccc-------CCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESF-------STYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f-------~typrtyDl~Ha~ 712 (796)
.+|||+|||.|+++.++..+ .|+..=+.|.. . + .|+--+.+|..+.. .+-+.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999987766432 25554333321 0 0 13222233443321 0113578887764
Q ss_pred ccc--c-cc-----cCCcchHHHHHhhcccccCCcEEEEe-cc----HHHHHHHHHHHhcCCceEEEe-e----ccCCce
Q 003776 713 HLF--S-KI-----KKRCNLVAVVAEVDRILRPEGKLIVR-DD----VETINELESMVKGMQWEVRMT-Y----SKDKEG 774 (796)
Q Consensus 713 ~~~--s-~~-----~~rC~~~~~l~E~DRiLRP~G~~i~r-d~----~~~~~~~~~~~~~l~W~~~~~-~----~~~~e~ 774 (796)
... + .| ...+.+..+|-++-|+|||||.+++- -. .+++..++. .+ |.+.+. + ..+-|.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~~ 181 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAEV 181 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccceE
Confidence 321 1 11 11233467899999999999999983 11 233333333 22 455443 1 123578
Q ss_pred EEEEE
Q 003776 775 LLCVE 779 (796)
Q Consensus 775 ~l~~~ 779 (796)
++||.
T Consensus 182 ~~~~~ 186 (188)
T TIGR00438 182 YIVAK 186 (188)
T ss_pred EEEEe
Confidence 88875
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0094 Score=62.57 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-----CCCCceeE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFDA 456 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-----fpd~SFDl 456 (796)
..++||||.=||..+..++.+ .|+++|+.+.....+. ++.+..|+. +.+.+..+ +.|+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 679999998888655555543 8999999987766663 555555654 34444432 2222 45789999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||.-. |-.+-..++.++.++||+||.+++.-
T Consensus 153 aFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc----chHHHHHHHHHHHhhcccccEEEEec
Confidence 99743 44444588899999999999999863
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00041 Score=72.76 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=57.2
Q ss_pred cccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----cc----cccccccccccCCCCcccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GL----FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~~~~ce~f~typrtyDl~Ha 711 (796)
-..|||+|||.|.++..|..+ |-+ +|+-+|-. .-|..+-+| +. -=+..|++. ++ + ..+|+|.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEee
Confidence 356999999999998877653 211 23333332 333333222 21 112233332 22 1 35898887
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
..++..+.. =....+|-+|-|+|+|||.+++.|.
T Consensus 129 ~~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 666543321 1245789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00035 Score=73.75 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=56.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc--ccccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF--GIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||++||+|-++..|...-----.|+-.|-. .-|.++-+| |+. =....=.+.+|.-..+||.|=+...|-..
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhh
Confidence 79999999999887776531111134444444 566655554 221 11111135566445899999866655544
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+.....|-||-|||||||.++|=
T Consensus 130 ---~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 130 ---PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ---SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCeEEEEe
Confidence 35677899999999999999873
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0037 Score=63.78 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEc
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVM 442 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~ 442 (796)
+-....-+.|...|... .-.+.+|||+-||+|.++...+.| .|+.+|.++..+...+ +.+...+.. ......
T Consensus 23 PT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEES
T ss_pred CCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeecc
Confidence 33344445555555432 014789999999999999988776 7999999987665554 444444543 345555
Q ss_pred CC-CCC---CCCCCceeEEEEcCCCcccccc--hHHHHHHHH--hhcCCCcEEEEEe
Q 003776 443 GT-ERL---PFPGIVFDAVHCARCRVPWHIE--GGKLLLELN--RVLRPGGFFIWSA 491 (796)
Q Consensus 443 d~-e~L---Pfpd~SFDlVvss~~~l~w~~d--~~~~L~Ei~--RVLKPGG~fv~s~ 491 (796)
|. ..+ ......||+|++-.. +... ...+|..+. .+|+++|++++-.
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHHhhcccCCCceEEEECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 53 222 224678999999763 3332 266777776 8999999999873
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0059 Score=70.12 Aligned_cols=122 Identities=24% Similarity=0.208 Sum_probs=79.0
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISA 440 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~ 440 (796)
..|.+........|.+.+.......+..+|||+=||.|.|+..|+++ .|+|+++++.++..|+ +.|+..++. +.+.
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~ 346 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFI 346 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEE
Confidence 35555444443333333322221235679999999999999999975 9999999999998887 667777766 4555
Q ss_pred EcCCCCCCCC---CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 441 VMGTERLPFP---GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 441 v~d~e~LPfp---d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..+++.+... ...||.|+.....-- -...+++.+. -++|-..+++|
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPRAG---ADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCCCC---CCHHHHHHHH-hcCCCcEEEEe
Confidence 5666555422 357899988541100 1124555554 45788888887
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0023 Score=62.72 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHh--h-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF--D-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La--~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L 447 (796)
......|...+..| .+..++|+|||.|-+..... + ..|+|+|++|..+..+. +.|.+..+.+.+.+++...+
T Consensus 34 asM~~~Ih~Tygdi----Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildl 108 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDI----EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDL 108 (185)
T ss_pred HHHHHHHHhhhccc----cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccch
Confidence 33344444455443 37899999999997763332 2 38999999998887775 67777777777888888777
Q ss_pred CCCCCceeEEEEcC
Q 003776 448 PFPGIVFDAVHCAR 461 (796)
Q Consensus 448 Pfpd~SFDlVvss~ 461 (796)
-+..+.||.++.+.
T Consensus 109 e~~~g~fDtaviNp 122 (185)
T KOG3420|consen 109 ELKGGIFDTAVINP 122 (185)
T ss_pred hccCCeEeeEEecC
Confidence 77779999999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.029 Score=62.46 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPfpd~SFDlVvss~~~l 464 (796)
.++.++|||||++|.|+..|.++ .|++||..+.. .. ......+.+...+..+ .| +.+.+|+|+|-..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~--~~-----L~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA--QS-----LMDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC--Hh-----hhCCCCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46889999999999999999987 69999966522 11 1122334555555433 33 2578999999751
Q ss_pred ccccchHHHHHHHHhhcCCC--cEEEEEeCCC-CCCchHHHHHHHHHH
Q 003776 465 PWHIEGGKLLLELNRVLRPG--GFFIWSATPV-YQKLPEDVEIWNAMS 509 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPG--G~fv~s~~~~-~~~l~El~~~~~~le 509 (796)
..|..++.-|.+.|..| ..+||..-+. -....+.+..+..+.
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35677778888888776 4677664333 334444444444343
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00055 Score=73.15 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=55.2
Q ss_pred ccccccCccccceeeecc---CC--CeEEEEeecCCCC-CChhHHHhh----cccc---cccccccccCCCCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMK---DI--SVWVMNVISIDSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~---~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~~ce~f~typrtyDl~Ha 711 (796)
.+|||+|||.|.++..+. .. .|..+ |.. ..+..+-++ |+-. +..++ +.++..+.+||+|++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv-----D~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGV-----DMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIIS 152 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE-----CCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEE
Confidence 489999999987543222 21 23333 322 344444333 3210 11232 223333479999998
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+|.... ....+|-|+=|+|||||.+++.+
T Consensus 153 ~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77665432 34678999999999999999964
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00079 Score=68.69 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=58.5
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-.+|||+|||.|.++.++... +. .-.++-++.. ..+..+-++. +--+.+|..+ ++.-+.+||+|++.+.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 457999999999998887643 21 0012222222 3334444432 1111222222 232246899999776654
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ..+..+|-++-++|+|||++++.+
T Consensus 118 ~~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 346678999999999999999853
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0059 Score=70.02 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=75.4
Q ss_pred EEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 392 VVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
++|-+|||.-.+...+.+. .|+.+|+|+..++..++..+. ......+...+...+.|++.+||+|+.-.. ++...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 8999999999998888774 899999999988877766662 223345667788999999999999998542 22111
Q ss_pred ----------chHHHHHHHHhhcCCCcEEEEE
Q 003776 469 ----------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 469 ----------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....+.++.|+|+|||.++..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 1236689999999999998854
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0017 Score=64.58 Aligned_cols=118 Identities=17% Similarity=0.265 Sum_probs=73.1
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH---------hhcccccccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY---------ERGLFGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~---------eRGlig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-+.|||+|||.|.++..|..+.. +|+-++-. ..+..+. .||+.-+.+|+...++. ..||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 45699999999999998877632 33333433 3333331 22244456677776653 4899985444
Q ss_pred ccccc------------------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 714 LFSKI------------------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 ~~s~~------------------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
-|... ..+..+..++-++-|+|+|||++++- ........+..++...-|++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 33210 01233567899999999999998763 1122345677777777777654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00093 Score=68.31 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=65.2
Q ss_pred cccccCccccceeeeccC---C--CeEEEEeecCCCCCChhHHH----hhcccc----cccccccccCCCCccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKD---I--SVWVMNVISIDSPDTLPIIY----ERGLFG----IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~---~--~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.|||||||.|.|+..+.. . .|+.+-.-| ..+..+- .-|+.. +..|..+.++.++..||+|...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 699999999999776532 1 244332222 2233221 123211 1123333333334568887743
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
+ ....+..+|-++-|+|+|||.+++. -..+.+.++...++.+.++..+
T Consensus 119 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 119 G------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred C------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 2 2235677889999999999999983 3455667777777766666544
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0025 Score=68.35 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCCEEEEECCCCchhHHHHhh-C--CeEEEeCChhhHHHHHHHH---------------HHHcCC-----------C--e
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-R--GVLTMSFAPKDEHEAQVQF---------------ALERGI-----------P--A 437 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-~--~V~gvDiSp~dl~~A~~q~---------------A~ergl-----------~--~ 437 (796)
++.++||||||+-.+-..-+. . .|+..|.++.....-+.-. +...|- . +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999999654322222 1 7999999887654332111 000110 0 1
Q ss_pred -EEEEcCC-CCCCCCC-----CceeEEEEcCCCcccccch---HHHHHHHHhhcCCCcEEEEEeC
Q 003776 438 -ISAVMGT-ERLPFPG-----IVFDAVHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 438 -~~~v~d~-e~LPfpd-----~SFDlVvss~~~l~w~~d~---~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+.+|. ..-|+.. ..||+|++.+|+---+.++ ..+++.+.++|||||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1333454 2233432 3599999998732222344 5789999999999999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00065 Score=71.97 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=65.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cc-----cccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FG-----IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-----~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-+|||++||+|=+|..|.+.-= .-.|+-.|-. +-|.++-+|-- .| ..+-=-|.+|+..++||++-+...|-.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 4699999999999999876421 2334444444 55666666543 12 112222556655699999986665554
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. .+...|=||-|||+|||.+++=
T Consensus 132 v~---d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 132 VT---DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CC---CHHHHHHHHHHhhcCCeEEEEE
Confidence 44 6788999999999999988763
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.01 Score=61.58 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=71.3
Q ss_pred cccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
+..+..-+..|.+....+ .++.+|+|||+-+|+++..++++ .|+++|+.|..... | +.++.
T Consensus 26 RSRAa~KL~el~~k~~i~---~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq 91 (205)
T COG0293 26 RSRAAYKLLELNEKFKLF---KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQ 91 (205)
T ss_pred cchHHHHHHHHHHhcCee---cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEe
Confidence 344444455566665432 46889999999999999998875 49999998854321 1 45555
Q ss_pred cCCCCC--------CCCCCceeEEEEcCC---Ccccccch-------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 442 MGTERL--------PFPGIVFDAVHCARC---RVPWHIEG-------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 442 ~d~e~L--------Pfpd~SFDlVvss~~---~l~w~~d~-------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.|...- -+....+|+|+|-.+ .-+|..|. ..++.-...+|+|||.|++-..-+
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 554221 134445899997441 11222222 234455678999999999875433
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=64.34 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC-CC--CCCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER-LP--FPGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~-LP--fpd~SFDlVvss 460 (796)
+.+|||+=|=||.|+.+.+.. .|+.+|.|...+..++..++. .++. +.+...|+.. |. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 679999999999999877653 799999999999888855544 4443 4556666421 21 123689999995
Q ss_pred CCCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 RCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
...+.-.. +...++..+.++|+|||.++++....
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 43222111 34578888999999999999875533
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0016 Score=69.29 Aligned_cols=132 Identities=16% Similarity=0.278 Sum_probs=75.6
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh---cc----cccccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER---GL----FGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR---Gl----ig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.+|||+|||.|.++.+|... |-+ .|+-+|.. ..+..+-++ ++ -=+..|+..+++ +..||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 36999999999999888654 211 23333333 333333322 21 112234544443 4789999765332
Q ss_pred cccc--------------------CCcc---hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCce-EEE-eecc
Q 003776 716 SKIK--------------------KRCN---LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWE-VRM-TYSK 770 (796)
Q Consensus 716 s~~~--------------------~rC~---~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~-~~~-~~~~ 770 (796)
.... .... +..++-++-++|+|||++++.-....-..++.++....|. +.. .+-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 2110 0001 2456778889999999999964434445677777655554 222 2445
Q ss_pred CCceEEEEEe
Q 003776 771 DKEGLLCVEK 780 (796)
Q Consensus 771 ~~e~~l~~~K 780 (796)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6778888764
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=63.66 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcC--CCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMG--TER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d--~e~ 446 (796)
..|...+|. -.+.+|||+|||+|...-++.. ..++++|.++.|+..++. .+... .......... ...
T Consensus 23 ~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 23 SELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhhccc
Confidence 444555554 3467999999999975554443 278999999999877653 33221 1111101111 122
Q ss_pred CCCCCCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++.. .|+|++++. +....+ ...++..+.+.+.+ +|+|..
T Consensus 98 ~~~~~--~DLvi~s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 98 LPFPP--DDLVIASYV-LNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred ccCCC--CcEEEEehh-hhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 34432 399999884 333333 24555555555555 777763
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00082 Score=71.16 Aligned_cols=97 Identities=11% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccccccCccccceeeeccC---CCeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++.+|.. .|-+ .|+-+|.. .-|..+-+| |+ |-+++.-...++. ..||+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 4599999999999877754 2322 23333332 333333222 22 2222211122221 3488877665
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.|..+. ......+|-+|-|+|+|||.+++.|.
T Consensus 134 ~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 554332 23356789999999999999999763
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00074 Score=69.40 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=64.8
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHhh--cccc---cccccccccCCCCcccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYER--GLFG---IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~eR--Glig---~~~~~ce~f~typrtyDl~Ha 711 (796)
+.-.+||++++.|||-|-|.+.|..+ .+.++-++|. -|..+-+| |+-. +-.+..+..| +.+|||||.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEE
Confidence 55678999999999999999999876 5677655442 22222222 1111 1122233333 589999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-+|=-+.+.-.+..++-.|...|+|||.+|+-
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 988887776667777888899999999999984
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0097 Score=61.14 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.+++|||+|.|+|..+..-+.. .|+..|+.|.- ..+....+...|+.+.+...+.- ..+..||+|+..- +.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~-~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagD--lf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL-EQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGD--LF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH-HHHhhcchhhccceeEEeecccc---CCCcceeEEEeec--ee
Confidence 4789999999999766555443 78999998743 34444556666766555544332 2567899999986 33
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHH
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPED 501 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El 501 (796)
+.......|..+.+.|+-.|..++...|...++++.
T Consensus 153 y~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 153 YNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred cCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchh
Confidence 333343444448888888787776667777777663
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.028 Score=57.64 Aligned_cols=132 Identities=19% Similarity=0.114 Sum_probs=80.8
Q ss_pred CcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHH
Q 003776 354 GEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 354 g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A 430 (796)
+..+.+|.+ ...++-.+..-..|..++... .-.+.++||+=+|+|.++...+.| .++.+|.+.......+ ++.
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~-~N~ 86 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK-ENL 86 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH-HHH
Confidence 344444443 223344455555566665431 024789999999999999988876 7999999887665554 334
Q ss_pred HHcC--CCeEEEEcCCC-CCCCCCC--ceeEEEEcCCCccccc-chHHHHHH--HHhhcCCCcEEEEE
Q 003776 431 LERG--IPAISAVMGTE-RLPFPGI--VFDAVHCARCRVPWHI-EGGKLLLE--LNRVLRPGGFFIWS 490 (796)
Q Consensus 431 ~erg--l~~~~~v~d~e-~LPfpd~--SFDlVvss~~~l~w~~-d~~~~L~E--i~RVLKPGG~fv~s 490 (796)
...+ .....+..++. .|+-... .||+|+.-.. .++.. +....+.. -..+|+|+|.+++-
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 4444 34455555543 2222223 4999999764 22211 22333333 56889999999987
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0014 Score=68.45 Aligned_cols=117 Identities=18% Similarity=0.328 Sum_probs=70.6
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHH----Hhhcc--ccc-ccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPII----YERGL--FGI-YHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~-~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.|+.+|... +-+ +|+-+|.. ..+..+ -..|+ +-+ ..|+-..++ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999988764 211 33333332 223222 22343 122 224434343 3689999876444
Q ss_pred ccc------cCCcc-----------------hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEE
Q 003776 716 SKI------KKRCN-----------------LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR 765 (796)
Q Consensus 716 s~~------~~rC~-----------------~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~ 765 (796)
... ...+. +..++-++-|+|+|||++++.........+++++....|...
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 321 11111 135677899999999999997655556778888877777543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0013 Score=67.11 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=66.1
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhccccc---cccccccc-CCCC-ccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGI---YHDWCESF-STYP-RTYDLLHAD 712 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~---~~~~ce~f-~typ-rtyDl~Ha~ 712 (796)
-+.|||+|||.|.|+.+|... |- .||+-++-. .-+.. +-.+|+-.+ ..|.-.-. ..+| .++|+|+..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 357999999999999888754 21 122222222 22222 223343111 11111101 1234 489988754
Q ss_pred cccccc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHH-hcCCceE
Q 003776 713 HLFSKI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMV-KGMQWEV 764 (796)
Q Consensus 713 ~~~s~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~-~~l~W~~ 764 (796)
.- ..| ..|+....+|-++-|+|+|||.+++. |.......+...+ ..-+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 21 122 24566678899999999999999986 5555566554444 4334554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=69.50 Aligned_cols=77 Identities=12% Similarity=-0.027 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCchhHHHHhh------------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC--CC---CCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD------------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RL---PFPG 451 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~------------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e--~L---Pfpd 451 (796)
...+|||.|||+|.|...++. .+++++|+++..+..+.................+.. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999998887753 257899999887776664443322122222222210 01 1112
Q ss_pred CceeEEEEcCCCcc
Q 003776 452 IVFDAVHCARCRVP 465 (796)
Q Consensus 452 ~SFDlVvss~~~l~ 465 (796)
+.||+|+++..+..
T Consensus 111 ~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 111 DLFDIVITNPPYGR 124 (524)
T ss_pred CcccEEEeCCCccc
Confidence 57999999875443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.00096 Score=69.40 Aligned_cols=94 Identities=16% Similarity=0.284 Sum_probs=60.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccc--cccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFG--IYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||+|||.|.|+..|.... .+|+-++.. ..+..+-+| |+-. +..++..-....+.+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 48999999999998887654 234444433 334333333 3211 1223322211234689999988877755
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. ....+|-.+.|+|+|||++++..
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 34567999999999999999864
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0011 Score=68.17 Aligned_cols=95 Identities=15% Similarity=0.277 Sum_probs=57.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc--cccccccccccC-CCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL--FGIYHDWCESFS-TYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~~ce~f~-typrtyDl~Ha~~~~s 716 (796)
-+|||+|||.|.|+..|.....-++ =++.. ..+..+-.+ |+ +-+.+.-.+.++ ..+.+||+|.+.+++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~---~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVT---GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEE---EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4799999999999887765432222 22222 223322221 22 111111111122 2257899999887775
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
... ....+|-++-|+|+|||++++..
T Consensus 124 ~~~---~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 124 HVP---DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hCC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 443 45678999999999999999864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0088 Score=62.16 Aligned_cols=118 Identities=16% Similarity=0.067 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---C-CeEEEeCChhhHHHHHHHHH------HHcCC
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---R-GVLTMSFAPKDEHEAQVQFA------LERGI 435 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~-~V~gvDiSp~dl~~A~~q~A------~ergl 435 (796)
|..-.......+.+.+.. .+....+|||||.|......+- . ..+|+++.+.-...|..... ...|.
T Consensus 23 YGEi~~~~~~~il~~~~l----~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL----TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp GGGCHHHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred eeecCHHHHHHHHHHhCC----CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444555555542 4578999999999975544332 2 59999998865444432111 11233
Q ss_pred C---eEEEEcCCCCCCCCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 436 P---AISAVMGTERLPFPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 436 ~---~~~~v~d~e~LPfpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
. +.+..+|....++.. ..-|+|+++. ..+..++...|.++..-||||-++|-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn--~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNN--TCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE----TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEec--cccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 233334332222110 2369999986 34455677788888899999988763
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0017 Score=55.98 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=56.3
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH---hhc---ccccc-cccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY---ERG---LFGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~---eRG---lig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+++|+|||.|++...+...+. ..+.-.+.. ..+..+- ..+ .+-++ .++......-+..||++.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999988876321 122222322 2222221 112 11111 2333222223578999998888765
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ .=....+|-.+-++|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 123466788889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0012 Score=69.17 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=59.1
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCCc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
..|||+|||+|-++..|... +. +|+-+|-. +-|..+-+++ ..++.-.+.+|.-+.+||+|.+...+-. --
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~---~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA---SD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc---cC
Confidence 57999999999998888765 22 45555554 4555555543 1223334555544589999998776533 23
Q ss_pred chHHHHHhhcccccCCc
Q 003776 723 NLVAVVAEVDRILRPEG 739 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G 739 (796)
.+..+|-||-|||||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 56788999999999953
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=58.14 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=73.3
Q ss_pred cccHHHHHHHHHHhCcccccCCC-CCEEEEECCCCchhHHHHh----hCCeEEEeCChhhHHHHHHHHHHHcCCC-eEEE
Q 003776 367 KNGALHYIDFIQESVPDVAWGKR-TRVVLDVGCGVASFGGFLF----DRGVLTMSFAPKDEHEAQVQFALERGIP-AISA 440 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~-~~~VLDIGCGtG~~a~~La----~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~ 440 (796)
.....-|.+++.+.+........ ..+++|||.|.|.-+..|+ +.+|+-+|....-+.--+ ..+.+.+++ +.++
T Consensus 44 ~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~-~~~~eL~L~nv~i~ 122 (215)
T COG0357 44 RDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLR-EVKKELGLENVEIV 122 (215)
T ss_pred CCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHH-HHHHHhCCCCeEEe
Confidence 33334455555555443222223 5899999999998777765 237888887665433222 445566887 4555
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
..-++.+.-...-||+|.|-. + .++..++.-+...||+||.|++
T Consensus 123 ~~RaE~~~~~~~~~D~vtsRA--v---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 123 HGRAEEFGQEKKQYDVVTSRA--V---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hhhHhhcccccccCcEEEeeh--c---cchHHHHHHHHHhcccCCcchh
Confidence 555666652211199999853 2 2456677778999999998863
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0015 Score=65.61 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=70.5
Q ss_pred cccccccccccCccccceeeeccCCC-----eEEEEeecCCCCCChhHHHhhccc---ccccccccccCCCCcccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDIS-----VWVMNVISIDSPDTLPIIYERGLF---GIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~~ce~f~typrtyDl~Ha 711 (796)
..+.-++|||+||+.|||..++..+. |+-+-+.|......+.++ +|=| .........++.-.+.+|||-+
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 33467999999999999999998876 444444444322222222 3311 1122233333321268999999
Q ss_pred ccccccccCC---cc--h---HHHHHhhcccccCCcEEEEe-----ccHHHHHHHHHHHhcCCceEEEe-eccCCceEEE
Q 003776 712 DHLFSKIKKR---CN--L---VAVVAEVDRILRPEGKLIVR-----DDVETINELESMVKGMQWEVRMT-YSKDKEGLLC 777 (796)
Q Consensus 712 ~~~~s~~~~r---C~--~---~~~l~E~DRiLRP~G~~i~r-----d~~~~~~~~~~~~~~l~W~~~~~-~~~~~e~~l~ 777 (796)
|..+..-..+ .. + ...|.=+-+.|||||.+|+. +..+++..++..-..+++-.-.. ..++.|.++|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv 177 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLV 177 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEE
Confidence 8855432211 11 1 12222333569999988874 22356666666545443322111 2235688888
Q ss_pred EEe
Q 003776 778 VEK 780 (796)
Q Consensus 778 ~~K 780 (796)
|.+
T Consensus 178 ~~~ 180 (181)
T PF01728_consen 178 CRG 180 (181)
T ss_dssp SEE
T ss_pred EcC
Confidence 864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.018 Score=70.09 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hccc-c----cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLF-G----IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+.|||++||+|+|+.++.....- .|+-+|.. .-|..+-+ -|+- . +-.|..+.+..+.++||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 67999999999999988876432 23334443 22222211 2331 0 223333322223578999875421
Q ss_pred -cccccC-------CcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEe
Q 003776 715 -FSKIKK-------RCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 715 -~s~~~~-------rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
|..-.. .=.+..++-..=|+|+|||.+++......+......+....+.++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 111000 01234667777899999999999755554445566666667777654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.037 Score=53.77 Aligned_cols=102 Identities=21% Similarity=0.110 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----C---CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----R---GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~SFD 455 (796)
.+..+|+|+|||.|+++..|+. . .|+++|..+..+..++ .++++.+.. ..+........+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4578999999999999999987 3 8999999998776665 444443311 111222111111 134566
Q ss_pred EEEEcCCCcccccchH-HHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 003776 456 AVHCARCRVPWHIEGG-KLLLELNRVLRPGGFFIWSATPVYQKL 498 (796)
Q Consensus 456 lVvss~~~l~w~~d~~-~~L~Ei~RVLKPGG~fv~s~~~~~~~l 498 (796)
+++. +|-+-++. .+|+-+.+ |+-.+++.++=+|..+
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~l 138 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHKL 138 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccchh
Confidence 6665 44455664 44444444 7766665545455543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0014 Score=63.81 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=61.5
Q ss_pred ccccccCccccceeeeccC-C--CeEEEEeecCCCCCChhHHHh----hccc--c-cccccccccCC-CCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-I--SVWVMNVISIDSPDTLPIIYE----RGLF--G-IYHDWCESFST-YPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~--~vwvmnv~p~~~~~~l~~i~e----RGli--g-~~~~~ce~f~t-yprtyDl~Ha~~ 713 (796)
-+|||+|||+|-++-.|.+ . +.=++.|=... ..+..+-. .|+- = +..|+-+ ++. |+..||+|.+..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 4699999999999888873 1 33344443322 33333333 3431 1 2234433 332 458899999888
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEeccH
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
+|.. -.....+|-+|=|.|+|+|.+++.+..
T Consensus 82 ~l~~---~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHH---FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGG---TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhh---ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7732 234556788999999999999998665
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0015 Score=68.84 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred cccccCccccceeeeccCC----CeEEEEeecCCCCCChh----HHHhh-ccccccccccccc--CCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLP----IIYER-GLFGIYHDWCESF--STYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~----~i~eR-Glig~~~~~ce~f--~typrtyDl~Ha~~~ 714 (796)
.|||+|||.|++..+|.+. .|+.+-+-| .-|. .+-+| ++..+.+|-..+. ...+.+||+|=.+
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d-- 148 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD-- 148 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC--
Confidence 5999999999999888764 244432222 1122 22222 3445555655432 1224568875311
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
....=....+|-++-|+|||||+++|
T Consensus 149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 149 ---VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11000112346799999999999999
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0014 Score=78.00 Aligned_cols=103 Identities=14% Similarity=0.266 Sum_probs=61.2
Q ss_pred ccccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc-cccc-cccccccC--CCCccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL-FGIY-HDWCESFS--TYPRTYDLLH 710 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~~ce~f~--typrtyDl~H 710 (796)
|..-.+|||+|||.|.++.+|... |- .+|+-.|-. ..|..+-.| |. +-++ .| +..++ .-|.+||+|.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVV 492 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIV 492 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEE
Confidence 334467999999999988776532 21 133333333 334333332 21 1111 12 22344 1258999999
Q ss_pred cccccccccC----------CcchHHHHHhhcccccCCcEEEEecc
Q 003776 711 ADHLFSKIKK----------RCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 711 a~~~~s~~~~----------rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+..++-.+.+ .-.+..+|-++-|+|+|||.++|.|.
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7765543321 22456789999999999999999863
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0036 Score=65.19 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=66.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-.|||+|||.|.++..|...+. -.|+-+|-. ..+..+-+ .|+ .-+..|+...++ +..||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999887766432 123333332 33332222 232 122345555443 368999997643321
Q ss_pred cc------------------CCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 718 IK------------------KRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 718 ~~------------------~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
-. ..+.+..++-++-|+|+|||.+++- .....+..+..+++.-.|.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 10 1123456777899999999999973 2222233444555555555443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0017 Score=69.74 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=36.3
Q ss_pred cccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 693 HDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 693 ~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
||.....+ .+..||+|.|..+|..+. .=....+|-++-|+|+|||+++|...
T Consensus 192 ~dl~~~~~-~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 192 HNLLAESP-PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ccCCCCCC-ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 45444322 247899999777765442 22234689999999999999999753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.023 Score=61.05 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++..||++|.|||.++..|+++ .|+++++++.|+.+-+.+. .|.+ .....+|....++| .||.++++.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 57889999999999999999885 8999999999987665332 2333 34555666555554 599999974
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=64.68 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCC--CceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPG--IVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd--~SFDlVvs 459 (796)
++..+||.+||.|.++..|+++ .|+|+|.++.++..++..... .-.+.++..+...+. .+. .+||+|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 4679999999999999999875 599999999998887644322 222344444433221 111 15666666
Q ss_pred cCC
Q 003776 460 ARC 462 (796)
Q Consensus 460 s~~ 462 (796)
.+.
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.034 Score=62.45 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCC---CCCCceeE
Q 003776 387 GKRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP---FPGIVFDA 456 (796)
Q Consensus 387 ~~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LP---fpd~SFDl 456 (796)
..++.+|||+-++.|.=+.+|+.. .|+++|+++.-+.... ....+.|+.. .....|...++ .....||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356899999999999877777664 2699999997665554 5555667764 45555655443 22235999
Q ss_pred EEE----c-CCCcc------cccch----------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 457 VHC----A-RCRVP------WHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 457 Vvs----s-~~~l~------w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
|+. + ...+. |...+ ..+|....++|||||.|+.++.....
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 995 2 12122 22211 26788899999999999998764433
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.054 Score=56.92 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=70.6
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
+....|..-+..+. .+++.+||-||..+|+...++..- .|.++++|+.... ..+..|.+|. ++.-+..|+.
T Consensus 57 KLaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 57 KLAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHST-TEEEEES-TT-
T ss_pred HHHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCC-ceeeeeccCC-
Confidence 34444544443222 256889999999999888888752 6999999996543 3346666663 3444555542
Q ss_pred CC----CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LP----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LP----fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.| .--..+|+|++-- ........++..+...||+||.|+++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDV---AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 1124899999964 323345677788999999999999873
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=65.21 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=70.1
Q ss_pred CEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC-CCCCCceeEEEEcCCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-PFPGIVFDAVHCARCR 463 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L-Pfpd~SFDlVvss~~~ 463 (796)
-+|||+.||+|..+..++.+ .|+++|+++..+...+ +.++..++. +.+...|+..+ ......||+|+.-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 58999999999999988764 5999999998776665 444444544 44555554332 22235799999854
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. -.+..+|..+.+.+++||+++++.+
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 2446899999999999999999855
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0014 Score=67.44 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=51.3
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhcccc---cc-cccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFG---IY-HDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig---~~-~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||+|.+++.|... .|+.+-+.|.-....-..+...|+.. ++ +|..+.++. ...||.|++...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 35999999999998776532 24433333221110111223345422 22 344444443 3689999976554
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .+.=++-|+|+|||.+++-
T Consensus 153 ~---------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 S---------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred c---------hhhHHHHHhcCcCcEEEEE
Confidence 2 2223566999999999984
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0076 Score=65.26 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc---c-ccccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL---F-GIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... +-+ .|+-+|.. ..+.++-+. |+ + =+.+||.++++. ..||+|-++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 36999999999999888753 311 33334443 344433332 33 2 233677776642 37999876411
Q ss_pred ccc------------ccCC-c---------chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHh-cCCceE-EE-eec
Q 003776 715 FSK------------IKKR-C---------NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVK-GMQWEV-RM-TYS 769 (796)
Q Consensus 715 ~s~------------~~~r-C---------~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~-~l~W~~-~~-~~~ 769 (796)
+.. +..+ + .+..|+-+.-++|+|||++++--.......+..+.. ...|.. .. .|-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 100 0111 1 234678889999999999999755555566777765 456643 22 245
Q ss_pred cCCceEEEEEe
Q 003776 770 KDKEGLLCVEK 780 (796)
Q Consensus 770 ~~~e~~l~~~K 780 (796)
.+.++++++++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 56788888765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.032 Score=62.13 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=81.2
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
|..+...--..+.+.+. .+.+|||+=||.|.|+..++.. .|+++|++|..+...+ +.++..++. +..+
T Consensus 171 Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i 243 (341)
T COG2520 171 FSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPI 243 (341)
T ss_pred ECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEE
Confidence 44433333344555543 3889999999999999998874 4999999997776655 455555554 3466
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+|...++..-+.||-|++.+ .. ....++....+.|++||.+.+-
T Consensus 244 ~gD~rev~~~~~~aDrIim~~--p~---~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGL--PK---SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred eccHHHhhhccccCCEEEeCC--CC---cchhhHHHHHHHhhcCcEEEEE
Confidence 777766665558899999976 22 3457888889999999998876
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0024 Score=69.60 Aligned_cols=102 Identities=16% Similarity=0.275 Sum_probs=60.7
Q ss_pred cccccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhH----HHhhccccccccccccc--CCCCccccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPI----IYERGLFGIYHDWCESF--STYPRTYDLLHAD 712 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~~ce~f--~typrtyDl~Ha~ 712 (796)
..+..+.|||+|||.|.++.++..+ |-. +++-.|-+..+.. +-+.|+-+-++-.+--| ..+| .+|++-..
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence 3466789999999999999888654 321 2233333333433 33446533222222222 1234 36887655
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+++-.|... ....+|-++-|.|+|||.++|-|
T Consensus 223 ~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSANEQ-LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 555444321 23457889999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.035 Score=61.71 Aligned_cols=173 Identities=19% Similarity=0.189 Sum_probs=101.1
Q ss_pred cCCCCccccccH-HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc
Q 003776 359 FPGGGTQFKNGA-LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER 433 (796)
Q Consensus 359 Fpgggt~F~~~a-~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er 433 (796)
|-.|+-+|...- .+|.+.+ ..|.+...+..++||-+|.|.|.-++.|.+. +|+-+|++|.|+.-+....+...
T Consensus 260 YldG~LQfsTrDe~RYhEsL--V~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~ 337 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESL--VYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA 337 (508)
T ss_pred EEcCceeeeechhhhhhhee--eecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh
Confidence 445556665532 2333332 1232222345789999999999999999875 79999999999987764333221
Q ss_pred ---C----CCeEEEEcCCC-CCCCCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 434 ---G----IPAISAVMGTE-RLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 434 ---g----l~~~~~v~d~e-~LPfpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
| ..+..+..|+. -+--..+.||+|+--+. -+-.+ .-..+..-+.|.|+++|++++.....|-+..-
T Consensus 338 ~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 338 LNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred hccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce
Confidence 1 12333334432 22233468999998541 11111 11366777889999999999876554443221
Q ss_pred HHHHHHHHHHHHH---hhcceeehhhhhhccceeEEEEEecC
Q 003776 501 DVEIWNAMSQLIK---AMCWELVSISKDTINKVGIAVYRKPT 539 (796)
Q Consensus 501 l~~~~~~le~l~~---~~~W~~v~~~~~~l~dvG~~L~rkgf 539 (796)
.|. +....+ -..|+...... +..++||.+..++-
T Consensus 417 ---fw~-i~aTik~AG~~~~Pyhv~VP-TFGeWGf~l~~~~~ 453 (508)
T COG4262 417 ---FWR-IDATIKSAGYRVWPYHVHVP-TFGEWGFILAAPGD 453 (508)
T ss_pred ---eee-ehhHHHhCcceeeeeEEecC-cccccceeeccccc
Confidence 122 222222 22355444433 78899998877543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0025 Score=71.01 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=68.4
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcc---cccc-cccccccCCCCccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGL---FGIY-HDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~-~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
..|||+|||.|.++..|... +- -+|+-+|.. ..+..+-++.- +-++ .|. +.++..+.+||+|-+.+.|..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhC
Confidence 46999999999987766442 11 123333332 44444444320 1122 222 2334335799999877766554
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH-----------------HHHHHHHHHHhcCCceEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV-----------------ETINELESMVKGMQWEVR 765 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-----------------~~~~~~~~~~~~l~W~~~ 765 (796)
.+ ...+|-|+-|+|+|||.++|.+.. ...+++..+++..-++..
T Consensus 192 ~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 PD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 43 356799999999999999875321 023555666666666643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0042 Score=66.26 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=73.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcccccccccccccCC-CCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGLFGIYHDWCESFST-YPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~~ce~f~t-yprtyDl~Ha~~~~s~ 717 (796)
..|+|+|||+|.|+-+|... +- ..|+-+|.. ..+..+-+ .|+--+-.|+.+.++. +...||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999877532 21 122333332 33332221 1321133455444431 2346898876643321
Q ss_pred c-------------cCCcc----------hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccC
Q 003776 718 I-------------KKRCN----------LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKD 771 (796)
Q Consensus 718 ~-------------~~rC~----------~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~ 771 (796)
. ..++. +..|+-...++|+|||.+++--..+....+..+++...|...+..|++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 11111 247778889999999999986555556778888887778777765444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0043 Score=70.17 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=68.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-----CChhHHHhhcc---cccccccc---cccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-----DTLPIIYERGL---FGIYHDWC---ESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-----~~l~~i~eRGl---ig~~~~~c---e~f~typrtyDl~Ha~ 712 (796)
..+||+|||.|.|..+|... |=+ ||+=++-. ..+.-+..+|| .-+.+|.- +.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999998754 211 23333322 22234455564 12233432 3344 4799999853
Q ss_pred cccccccC---C-cchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHH-hcCCceE
Q 003776 713 HLFSKIKK---R-CNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMV-KGMQWEV 764 (796)
Q Consensus 713 ~~~s~~~~---r-C~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~-~~l~W~~ 764 (796)
. -..|.. | =-...+|-|+=|+|+|||.+.++ |..++...+.... ..-++..
T Consensus 200 F-PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 F-PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred C-CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2 134431 2 12367899999999999999996 6666666555544 3335544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0037 Score=64.47 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=55.0
Q ss_pred ccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHHHhh----cc---cccc-cccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPIIYER----GL---FGIY-HDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++..|... + . -.|+-+|.. ..+..+-++ ++ +-++ .|... ++.=+.+||+|.+.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKT--GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 46999999999998776432 1 0 112222222 222222221 11 1111 22221 222146899998766
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++- .......+|-.+-++|+|||++++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 553 33457788999999999999999753
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.039 Score=57.57 Aligned_cols=111 Identities=16% Similarity=0.290 Sum_probs=69.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--CC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e~ 446 (796)
.+...+++.+. .++++||.||-|-|.....+.++ .-+.++..|.-+.+.+ ..+-... .......+. ..
T Consensus 89 piMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr-~~gw~ek-~nViil~g~WeDv 161 (271)
T KOG1709|consen 89 PIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR-DWGWREK-ENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH-hcccccc-cceEEEecchHhh
Confidence 34444444443 35899999999999998888876 4456777774432222 2221111 112222221 22
Q ss_pred C-CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 L-PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 L-Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ .++++.||.|+--. +-....|...+...+.|+|||+|.|-+.
T Consensus 162 l~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 2 26688999999753 1244457788888999999999999875
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=61.82 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC-------------------------------------------CeEEEeCChhhHHHH
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-------------------------------------------GVLTMSFAPKDEHEA 425 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-------------------------------------------~V~gvDiSp~dl~~A 425 (796)
++..++|-=||+|++....+-. .++|+|+++.++..|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3578999999999987755432 167999999999998
Q ss_pred HHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---c---h----HHHHHHHHhhcCCCcEEEEEeC
Q 003776 426 QVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---E---G----GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 426 ~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d---~----~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ ..|+..|+. +.+.+.++..|+-+-..+|+|+|+.. |-. + . ..+...+.+.++--++++|++.
T Consensus 271 k-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 K-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP---YGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC---cchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 7 788888887 67888888887644478999999863 322 1 1 2334456678888888888743
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0021 Score=67.26 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=73.3
Q ss_pred ccccccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccc-cccccccccC--CCCccccccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFG-IYHDWCESFS--TYPRTYDLLHADHL 714 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig-~~~~~ce~f~--typrtyDl~Ha~~~ 714 (796)
.+-+.+|.+||.|||+|-+|-+|+++- =-+.=+|-. |-|..+.|+|+-- +||-=-..|. .=++-||||-|..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 344569999999999999999998731 112223434 7888999999622 1221112243 33688999999999
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|.-+. .++.|+.=+.+.|.|||.|+++
T Consensus 198 l~YlG---~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 198 LPYLG---ALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHhhc---chhhHHHHHHHhcCCCceEEEE
Confidence 98765 5788899999999999999997
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0025 Score=65.57 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChh-HHHhhccc--ccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP-IIYERGLF--GIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGli--g~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
-.|||+|||-|--|-+|..+..=|.-|=..... ..+. ++-.+||- ....|.. .+. +|..||+|.+..+| .+.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~~-~~~~yD~I~st~v~-~fL~ 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN-DFD-FPEEYDFIVSTVVF-MFLQ 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CBS--TTTEEEEEEESSG-GGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch-hcc-ccCCcCEEEEEEEe-ccCC
Confidence 469999999999999998887655544333333 3333 45556763 2233332 232 46899999876666 4555
Q ss_pred CcchHHHHHhhcccccCCcEEEE
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
|-.+..|+--|-.-|+||||+++
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEE
Confidence 66788899999999999999888
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.014 Score=65.29 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=38.7
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGT 444 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~ 444 (796)
..|||+=||+|.|+..|+.. .|+|+++.+.++..|+ +.|...++.. .+...++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeec
Confidence 38999999999999999985 8999999999988887 6666677654 4444433
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0075 Score=66.31 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=72.9
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc---cc-cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL---FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl---ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... |- ..|+-+|-. ..+.++- ..|+ |- +..|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999988654 32 234444543 4444332 2343 22 2335545444 368999987621
Q ss_pred ccc------------ccCC---------c-chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhc--CCceEEEeecc
Q 003776 715 FSK------------IKKR---------C-NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKG--MQWEVRMTYSK 770 (796)
Q Consensus 715 ~s~------------~~~r---------C-~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~--l~W~~~~~~~~ 770 (796)
+.. +... . .+..|+-+.-++|+|||++++--... ...+..+... +.|- ..+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~---~~~~ 286 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL---EFEN 286 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE---EecC
Confidence 111 0000 0 12467889999999999999853322 3456666644 4562 2233
Q ss_pred CCceEEEEEe
Q 003776 771 DKEGLLCVEK 780 (796)
Q Consensus 771 ~~e~~l~~~K 780 (796)
....+++..+
T Consensus 287 ~~~~~~~~~~ 296 (307)
T PRK11805 287 GGDGVFLLTR 296 (307)
T ss_pred CCceEEEEEH
Confidence 4455555553
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0024 Score=66.13 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=50.5
Q ss_pred ccccccCccccceeeeccCC--C---eEEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S---VWVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~---vwvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.+++.|... + |+.+-+.| ..+.. +-+.|+ .-+.+|..+.++. ...||+|+.+
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 36999999999999988654 2 43332222 22222 222343 1223354444333 2579999965
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
... ..+.-.+-|.|+|||++|+-
T Consensus 154 ~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCc---------ccccHHHHHhcCcCcEEEEE
Confidence 432 22334556789999999974
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.01 Score=60.43 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=55.4
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhcc--cccc-cccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGL--FGIY-HDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||+|.++..+... ..-|.-|=+. +..+..+- ..|+ |=++ .|..+.++..+-.+|.++.+
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~--- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE--- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE---
Confidence 46999999999998766421 2222222221 12222221 2233 1111 11111111111124554422
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcC
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGM 760 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l 760 (796)
....+..+|-++-|+|+|||++++-.. .+.+..+.+..+.+
T Consensus 117 ----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 117 ----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred ----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 123567889999999999999998643 33445555556544
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.22 Score=53.74 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER 446 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~ 446 (796)
+.+|..+|.. .++.+||+-|.|+|+++.+|++. ++...|+...-...|...+ ++.|+. +.+.+.|...
T Consensus 94 ia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeeccc
Confidence 3455666553 56899999999999999999875 7899999664444444333 234443 4555566555
Q ss_pred CCC--CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPF--PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPf--pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..| .+..+|+|+.-. +.|..++--++.+||-+|.-+.+
T Consensus 169 ~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEe
Confidence 444 367899999864 24556777777899988744434
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0089 Score=64.95 Aligned_cols=115 Identities=21% Similarity=0.298 Sum_probs=66.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... +-+ .|+-+|-. ..|.++-+ .|+ |- +..|+-+.++ +..||+|-++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 46999999999999998754 211 33334443 33433322 354 22 2344444443 357999887521
Q ss_pred cccc------------cC---------Ccc-hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceE
Q 003776 715 FSKI------------KK---------RCN-LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEV 764 (796)
Q Consensus 715 ~s~~------------~~---------rC~-~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~ 764 (796)
+... .. ... +..++-++-++|+|||++++--... +..++.+.....|..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHHhCCCce
Confidence 1110 00 011 2467888999999999999864332 257777776554433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0045 Score=67.11 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=69.8
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChh-HHHhhccc----ccccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLP-IIYERGLF----GIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~-~i~eRGli----g~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
+|||+|||-|+++-++..+ +|-|+.|.-..+. ...+ .|.+|||- =.++||...=. .||=|=+-+.|-..
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrIvSvgmfEhv 150 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRIVSVGMFEHV 150 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc----ccceeeehhhHHHh
Confidence 5999999999999888766 7888887766554 3333 48889986 45777754433 37777777777654
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. -...+++-=+.++|+|||.+++-
T Consensus 151 g~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 151 GK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred Cc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 32 35678888899999999999974
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.015 Score=66.47 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=79.6
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc--cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+|||+|||.|.++.+|... +-. +|+-+|.. ..+.++-+ .|+ .=+..||.+....-...||+|-++-=+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999877542 321 23333332 34433322 232 22334554431111246999887553321
Q ss_pred ccC-------------------Ccc---hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEE--EeeccCCc
Q 003776 718 IKK-------------------RCN---LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR--MTYSKDKE 773 (796)
Q Consensus 718 ~~~-------------------rC~---~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~--~~~~~~~e 773 (796)
... .-. +..|+-+.-+.|+|||++++--..+-...++++++...|... ..|-.+.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 110 011 235666778899999999986555556788888887777643 33566788
Q ss_pred eEEEEEec
Q 003776 774 GLLCVEKS 781 (796)
Q Consensus 774 ~~l~~~K~ 781 (796)
+++++++.
T Consensus 412 R~v~~~~~ 419 (423)
T PRK14966 412 RVTLGKYM 419 (423)
T ss_pred EEEEEEEh
Confidence 99988753
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.059 Score=58.96 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=73.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc----C-CCeE-EE---
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----G-IPAI-SA--- 440 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er----g-l~~~-~~--- 440 (796)
..++.|..++|.-...+...+||--|||.|+++..|+.. .+.|=++|--|+--. .++... + +.+. ++
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeeecc
Confidence 446677777775333344668999999999999999875 455556666665433 232211 0 0000 00
Q ss_pred --------------------------------E-cCC-CCC--CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCC
Q 003776 441 --------------------------------V-MGT-ERL--PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPG 484 (796)
Q Consensus 441 --------------------------------v-~d~-e~L--Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPG 484 (796)
. +|. +-. +-..++||+|+..+ ++.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCC
Confidence 0 000 000 01124699999765 2433347789999999999999
Q ss_pred cEEEEEeCCCCC
Q 003776 485 GFFIWSATPVYQ 496 (796)
Q Consensus 485 G~fv~s~~~~~~ 496 (796)
|+++=..|..|.
T Consensus 290 GvWiNlGPLlYH 301 (369)
T KOG2798|consen 290 GVWINLGPLLYH 301 (369)
T ss_pred cEEEeccceeee
Confidence 999955555554
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0057 Score=56.32 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=52.3
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhccccc---ccc--cccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGI---YHD--WCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~---~~~--~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++.+|... |- ..|+.+|-. ..+.. +...|+-.+ ..+ |+.+ ..+.+||.|=...
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 47999999999999888764 21 233333332 22322 122232111 112 2222 2235788875433
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+. .+..++-++-|+|+|||++|+.
T Consensus 97 ~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 221 2457899999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0039 Score=64.73 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=47.0
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHh----hcccc---cccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYE----RGLFG---IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGlig---~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.+++.|... .|+.+-+.| ..+.++-+ -|+-. +..|-.+.++. ...||+|++.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~-~~~fD~I~~~ 152 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE-NAPYDRIYVT 152 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCc-CCCcCEEEEC
Confidence 47999999999999776542 334333322 22222211 13211 11122222221 2679999865
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..+ ..+.-.+-+.|+|||.+|+-
T Consensus 153 ~~~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 153 AAG---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCc---------ccchHHHHHhhCCCcEEEEE
Confidence 433 22333455689999999984
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0069 Score=63.25 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=61.6
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhhcc-cc--cccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYERGL-FG--IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++..|... .-.-..|+-+|.. ..+..+..+.- -+ +...-+..++.-+.+||+|-+.++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 4467999999999988777531 0111345566655 55655555421 11 1111123444446899999998887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
....+. .+..+|-||-|+|| |.+++.|
T Consensus 140 hh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 140 HHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 655432 24568999999999 5666654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.032 Score=56.09 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=45.9
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC----CCCCCCCceeEEEEcC
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE----RLPFPGIVFDAVHCAR 461 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e----~LPfpd~SFDlVvss~ 461 (796)
.+|||+.||.|..+..+++. +|+++|+++..+.-++ ..|+-.|+. +.+..+|.. .+.... .||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~-~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNK-IFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccc-cccEEEECC
Confidence 37999999999999999986 7999999998887776 667777764 566777642 222222 289999875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.0063 Score=64.23 Aligned_cols=114 Identities=22% Similarity=0.169 Sum_probs=73.7
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccc--------cccCCCCccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWC--------ESFSTYPRTYDLLHAD 712 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~c--------e~f~typrtyDl~Ha~ 712 (796)
..-|.+.|+|||.| +||..+.- . -=+|+-+|-. .+|.++ .-+.--+||.=- .+|..=+.+.|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae-~-~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAE-H-YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHH-h-hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 45679999999999 77776421 1 2356666665 677743 333333343322 2333336888998755
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEE----EeccHHHHHHHHHHHhcCCce
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLI----VRDDVETINELESMVKGMQWE 763 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i----~rd~~~~~~~~~~~~~~l~W~ 763 (796)
.+| +=|.++..+-++-|||||.|-+| .+|+.-...++..+..+++|+
T Consensus 108 qa~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 533 34678999999999999988322 365555666777777777776
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.01 Score=65.04 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=66.9
Q ss_pred ccccccCccccce--eeeccCC-CeEEEEeecCCCCCChhHHHhhccccccc-ccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGF--AAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYH-DWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~f--aA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
+.|||+|||+|-+ ||+++-- .|..+=+=|..-.....-+..-|+-.-+. .....++. ..||||=|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH---
Confidence 5899999999965 4444432 45554443322222222333344322111 01222332 78999987665543
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEeeccCCceEEEEEec
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMTYSKDKEGLLCVEKS 781 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K~ 781 (796)
|..++=.+.+.|+|||++|++--. +....|.+..+. -|.+.-...++.=..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 345667789999999999998222 123445555555 676654433332234555553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.034 Score=59.42 Aligned_cols=105 Identities=15% Similarity=0.246 Sum_probs=67.1
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccccccCCcchH
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLV 725 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~ 725 (796)
.|-|||||-|-.|.. ...+|.-|-+++.+..-+.- |+.. .|--.+|.|++- .|+|+-. -++.
T Consensus 183 vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~c------------Dm~~-vPl~d~svDvaV--~CLSLMg--tn~~ 244 (325)
T KOG3045|consen 183 VIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIAC------------DMRN-VPLEDESVDVAV--FCLSLMG--TNLA 244 (325)
T ss_pred EEEecccchhhhhhc-cccceeeeeeecCCCceeec------------cccC-CcCccCcccEEE--eeHhhhc--ccHH
Confidence 388999999987753 34588888888877652221 1111 233357888754 3344221 2467
Q ss_pred HHHHhhcccccCCcEEEEeccHHHHHH---HHHHHhcCCceEEEee
Q 003776 726 AVVAEVDRILRPEGKLIVRDDVETINE---LESMVKGMQWEVRMTY 768 (796)
Q Consensus 726 ~~l~E~DRiLRP~G~~i~rd~~~~~~~---~~~~~~~l~W~~~~~~ 768 (796)
+.+.|..|||+|||.|+|-+-..-... +.+-+..|-.++...+
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 899999999999999999644332222 3333467777776553
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0066 Score=61.73 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=52.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCC-CccccccccccccccccCCcc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTY-PRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~ty-prtyDl~Ha~~~~s~~~~rC~ 723 (796)
+|||+|||.|.++.+|.+..-. +++-++.. ..+..+..+|+--+..|....++.+ +++||+|-+.+.|....+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC---
Confidence 6999999999999888643211 11222322 4455555667533344444433333 479999998887765432
Q ss_pred hHHHHHhhcccccC
Q 003776 724 LVAVVAEVDRILRP 737 (796)
Q Consensus 724 ~~~~l~E~DRiLRP 737 (796)
...+|-||-|++++
T Consensus 91 ~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 PEEILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHHHHhCCe
Confidence 45567776665554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.014 Score=60.36 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=58.9
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-.+|||+|||.|.|+.+|.....- |+-+|.. +.+..+-++ |+-..++-....++..+.+||+|.+..+|..+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 468999999999999988765432 3333433 444444333 22111221222244445789999988777554
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. .-.+..++-++-|++++++.+.+..
T Consensus 141 ~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 141 P-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred C-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 3 2346677788888886666555543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.01 Score=61.32 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=61.9
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
....|||+|||.|-+..+|... +- ..++-+|-. ..+..+-++ ++-=+-.+..++|+ +++||+|-+.++|..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 3456999999999999988764 21 133444433 455555443 11111234444444 5899999999998876
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .=.+..+|-||-|++ ++++||.
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 3 335677899999998 5788874
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.018 Score=57.60 Aligned_cols=112 Identities=20% Similarity=0.252 Sum_probs=65.4
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc---cccccccccccCCCCcccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL---FGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl---ig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
.-.+|||+|||+|-.+.+|..+ +-.. |+-+|.. .-+..+. ..|+ --+.+|+.+.++ +..||+|=++-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 3456999999999888888654 3322 2222332 2233221 2232 234567777666 58999987554
Q ss_pred cccccc--CCcchHHHHHhhcccccCCcEEE--EeccHHHHHHHHHHHh
Q 003776 714 LFSKIK--KRCNLVAVVAEVDRILRPEGKLI--VRDDVETINELESMVK 758 (796)
Q Consensus 714 ~~s~~~--~rC~~~~~l~E~DRiLRP~G~~i--~rd~~~~~~~~~~~~~ 758 (796)
=|..-. ....+..++-+-=|+|+|||.++ ++....+-..++++..
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332211 12346788899999999999885 4544444444555544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.015 Score=60.08 Aligned_cols=100 Identities=7% Similarity=0.103 Sum_probs=62.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-ccc---ccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGI---YHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~---~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-..|||+|||.|.|+.+|.+... .|+=+|.. ..+..+.+|.- -+. ..=.+..+...+.+||+|=+..++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 346799999999999999987653 23334443 45555555431 010 01112222223478998876666544
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+ ....+..++-++.|+++|++++.+...
T Consensus 132 ~-~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 Y-PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3 334567789999999999888887543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.089 Score=56.78 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCEEEEECCCCc--hhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-------------CC
Q 003776 389 RTRVVLDVGCGVA--SFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-------------LP 448 (796)
Q Consensus 389 ~~~~VLDIGCGtG--~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-------------LP 448 (796)
..+..||||||-- .....+++ .+|+-+|.+|.-+..++.-++....-...+..+|..+ |.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5789999999954 23334433 3899999999776665533332221114555665422 12
Q ss_pred CCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 449 FPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
| +..+=+++.. .+||.. ++..++..++..|.||.+|+++. ...+..++
T Consensus 148 ~-~rPVavll~~--vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish-~t~d~~p~ 198 (267)
T PF04672_consen 148 F-DRPVAVLLVA--VLHFVPDDDDPAGIVARLRDALAPGSYLAISH-ATDDGAPE 198 (267)
T ss_dssp T-TS--EEEECT---GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE-EB-TTSHH
T ss_pred C-CCCeeeeeee--eeccCCCccCHHHHHHHHHHhCCCCceEEEEe-cCCCCCHH
Confidence 2 2344444443 366664 56899999999999999999984 34444444
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.011 Score=60.70 Aligned_cols=112 Identities=24% Similarity=0.372 Sum_probs=82.7
Q ss_pred cccccCccccceeeeccC-CCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCC-ccccccccccccccccCCcc
Q 003776 646 NVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYP-RTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typ-rtyDl~Ha~~~~s~~~~rC~ 723 (796)
.|||.|||.|.+-++|.+ +.|-+.-|-- .+..+.-...||+-=+-+|.-+-++.|| .+||.|=.+..+.... .
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~---~ 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR---R 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh---H
Confidence 499999999999999987 5676665542 2356778899999988899999999888 7999987555444332 2
Q ss_pred hHHHHHhhcccccCCcEEEEe------------------------------ccHH----HHHHHHHHHhcCCceEE
Q 003776 724 LVAVVAEVDRILRPEGKLIVR------------------------------DDVE----TINELESMVKGMQWEVR 765 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~r------------------------------d~~~----~~~~~~~~~~~l~W~~~ 765 (796)
-..||-|| ||=|...|++ |++. .+...+.+.+.+.+.+.
T Consensus 91 P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 91 PDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred HHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 35778898 5557788874 3333 56677777777777664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.037 Score=59.47 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=72.5
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCC-CCChhHHHhh-cccc-------cccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDS-PDTLPIIYER-GLFG-------IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~-~~~l~~i~eR-Glig-------~~~~~ce~f~typrtyDl~Ha 711 (796)
...+.|||+|||.|+++.+|... |- +.|+-++- +.-+.++-++ ++.+ +..|.-+-+...+.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 35688999999999999877543 21 12222222 2333333332 1111 123333334445678999965
Q ss_pred ccccccc--cCCcchHHHHHhhcccccCCcEEEE---eccHHHHHHHHHHHhcCCceEEEeec-cCCceEEEEEe
Q 003776 712 DHLFSKI--KKRCNLVAVVAEVDRILRPEGKLIV---RDDVETINELESMVKGMQWEVRMTYS-KDKEGLLCVEK 780 (796)
Q Consensus 712 ~~~~s~~--~~rC~~~~~l~E~DRiLRP~G~~i~---rd~~~~~~~~~~~~~~l~W~~~~~~~-~~~e~~l~~~K 780 (796)
+. |... ........++-++-++|+|||.+++ .........++.+...+.-.+.+... .....++++.|
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 52 3321 1112235788899999999999997 23322333344444444322222211 22346788876
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=55.60 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
...++.|.+.+.. ..+..|||||+|+|.++..|+++ +|+++++++.....-+..+. ....+.++..|...+.
T Consensus 16 ~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 3455666666543 25789999999999999999875 89999999866544432222 2344567777877766
Q ss_pred CCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCC
Q 003776 449 FPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 449 fpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP 483 (796)
++. +....|+++. ++.. ...+|..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~Nl---Py~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNL---PYNI-SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEE---TGTG-HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEe---cccc-hHHHHHHHhhcccc
Confidence 554 4566777764 4432 34556665553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.0068 Score=60.09 Aligned_cols=48 Identities=31% Similarity=0.407 Sum_probs=40.2
Q ss_pred CCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 444 TERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 444 ~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
....+|.+++.|+|++.. +..|. ....++++++|+|||||+|-++++.
T Consensus 38 s~e~~F~dns~d~iyaeH--vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH--VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhccCCCcchHHHHHHH--HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 356789999999999987 55565 4578999999999999999998653
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.069 Score=55.71 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=62.0
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhccccccccc-ccccCCCCccccccccccccccccCCc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYHDW-CESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~-ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
-.|-|||||-|-.|+++.+. .|.-.-.+..... + +. -|. --|++ +.+.|++= .++|+-. -
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~--V--------ta--cdia~vPL~--~~svDv~V--fcLSLMG--T 135 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR--V--------TA--CDIANVPLE--DESVDVAV--FCLSLMG--T 135 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SSTT--E--------EE--S-TTS-S----TT-EEEEE--EES---S--S
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCCCC--E--------EE--ecCccCcCC--CCceeEEE--EEhhhhC--C
Confidence 46899999999999887532 3444444443321 1 00 111 12233 36777754 2333211 2
Q ss_pred chHHHHHhhcccccCCcEEEEeccHH---HHHHHHHHHhcCCceEEEeeccCC-ceEEEEEecc
Q 003776 723 NLVAVVAEVDRILRPEGKLIVRDDVE---TINELESMVKGMQWEVRMTYSKDK-EGLLCVEKSM 782 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~rd~~~---~~~~~~~~~~~l~W~~~~~~~~~~-e~~l~~~K~~ 782 (796)
++.++|.|-.|||||||.++|-+-.. .+...-+.++++-.++...+..++ =-++...|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 45689999999999999999964443 334445566888888877654433 2345555554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.53 Score=51.68 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=67.5
Q ss_pred cccccCccccceeeeccCCC---eEEEEeecCCCC-CChh----HHHhhcccc---cccccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSP-DTLP----IIYERGLFG---IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~-~~l~----~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+|+|.|||+|-.|+.|.+.+ -++| +|.. .-|. -+-.-|+=+ ...+-+++-. ..||+|=++-=
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtm----vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPP 233 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTL----VDVNARAVESARKNLAANGVENTEVWASNLYEPVE---GKFDLIISNPP 233 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEE----EecCHHHHHHHHHhHHHcCCCccEEEEeccccccc---ccccEEEeCCC
Confidence 89999999999999998764 3444 3332 1111 112223333 2233344333 48999775544
Q ss_pred cccccCC--cchHHHHHhhcccccCCcEEEEe--ccHHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 715 FSKIKKR--CNLVAVVAEVDRILRPEGKLIVR--DDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 715 ~s~~~~r--C~~~~~l~E~DRiLRP~G~~i~r--d~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
|-.-+.- -....|+.+-=+-|+|||-++|= -...+-.+++++-. ++.......+=+|+-+.|
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEec
Confidence 4322110 01135777888999999988874 33334445555443 444433333334544444
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.13 Score=57.17 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcC--CC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMG--TE 445 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d--~e 445 (796)
++.+....+.+. ..+|||+|.|.|.-+.++... .++.++.++. +..---..+..-+... .....+ ..
T Consensus 102 L~~L~~~~~dfa----pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~d 176 (484)
T COG5459 102 LDELQKRVPDFA----PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTED 176 (484)
T ss_pred HHHHHHhCCCcC----cchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchh
Confidence 355555666533 567999999999766555432 5556666652 2222222222222111 011111 24
Q ss_pred CCCCC-CCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 446 RLPFP-GIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 446 ~LPfp-d~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++ ...|++|+...-+++--. .....+..+..+|.|||.|+|...
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 55554 356888887653333222 223478889999999999999843
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.014 Score=63.88 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh------c--ccccccccccccCCCCccc----c-ccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER------G--LFGIYHDWCESFSTYPRTY----D-LLH 710 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR------G--lig~~~~~ce~f~typrty----D-l~H 710 (796)
.+|||+|||.|.++..|++.-.=...|+++|-. .-|..+.+| + +.++..|.++.++. |..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEEE
Confidence 569999999999988887541002457788776 666666554 2 24566677665432 3333 2 222
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....|... .+=....+|-+|=+.|+|||.++|.
T Consensus 144 ~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22222222 2223457899999999999999974
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=58.40 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.6
Q ss_pred CCCCCceeEEEEcCCCccccc
Q 003776 448 PFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~ 468 (796)
-||.++.+++||+.+ +||..
T Consensus 157 LfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred ccCCCceEEEEeecc-ceecc
Confidence 388999999999986 99975
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.052 Score=48.25 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=56.2
Q ss_pred ccccCccccc--eeeeccCCCeEEEEeecCCCC-CChhHHHhhc-------cccccccccc-ccCCCC-ccccccccccc
Q 003776 647 VMDMRSVYGG--FAAAMKDISVWVMNVISIDSP-DTLPIIYERG-------LFGIYHDWCE-SFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 647 vmDm~~g~g~--faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~~ce-~f~typ-rtyDl~Ha~~~ 714 (796)
++|+|||.|. +.+.+......+.. .+.. ..+.....+. +-.+..++.. .++.-. .+||++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55555554434443 2222 2222221111 1233344433 133323 389998 6665
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
...+.. ...++-++-|+|+|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 544444 788999999999999999987443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.39 Score=51.02 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CCCCCC---CCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERLP---FPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~e~LP---fpd~SFDlVvss 460 (796)
.+++++||||+-||.|+..|+++ .|+++|+.-..++.- .+....+..... ++..+. |. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 46899999999999999999986 899999976544332 233333332222 223331 22 267899986
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++ ..+..+|..+..+|+|+|.+++-.-
T Consensus 152 vSF----ISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 152 VSF----ISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred eeh----hhHHHHHHHHHHhcCCCceEEEEec
Confidence 532 2577999999999999999886543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.025 Score=58.30 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=47.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc--ccc-cccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF--GIY-HDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~-~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||+|.+++.|....- .|+-++.. .-+..+-++ |+- -+. .|.-+.++. ...||+|..+..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~ 155 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAAAP 155 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccCch
Confidence 4699999999999886654311 12222322 223322221 331 111 222122221 26899998665332
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+.-++-+.|+|||.+++.
T Consensus 156 ---------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 156 ---------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ---------hhhHHHHHhcCCCcEEEEE
Confidence 2234456899999999974
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.044 Score=59.55 Aligned_cols=130 Identities=18% Similarity=0.330 Sum_probs=78.5
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcc---cccccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+|+|||||.|--|.+|... |. .+|+-+|-. .-|.+ +-..|| +-+..|| |+..+.+||||=++==+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCC
Confidence 8999999999999999765 33 345555543 33433 233353 2333344 444445888875332110
Q ss_pred -------------------cccCCcch---HHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc-eEE--EeeccC
Q 003776 717 -------------------KIKKRCNL---VAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW-EVR--MTYSKD 771 (796)
Q Consensus 717 -------------------~~~~rC~~---~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W-~~~--~~~~~~ 771 (796)
.+.....+ ..|+-+..++|+|||++++.-...-...|+++.....+ ... ..+-.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 11111332 46788899999999999998776667788888877774 222 223334
Q ss_pred CceEEEEEe
Q 003776 772 KEGLLCVEK 780 (796)
Q Consensus 772 ~e~~l~~~K 780 (796)
.+.++++++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 455555543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.0025 Score=57.73 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=56.2
Q ss_pred ccccCccccceeeeccCCC--eEEEEeecCCCC-CChhHHHhhc----c-cc-cccccccccCCCCcccccccccccccc
Q 003776 647 VMDMRSVYGGFAAAMKDIS--VWVMNVISIDSP-DTLPIIYERG----L-FG-IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 647 vmDm~~g~g~faA~l~~~~--vwvmnv~p~~~~-~~l~~i~eRG----l-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
|||+|||.|.+..+|...- ---..+.-+|-. ..|..+.++. + += +..|. ..++..-.+||+|=+.+++-.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 7999999999998887530 001334444443 5566665555 1 11 22222 334544469999998766333
Q ss_pred ccCCcchHHHHHhhcccccCCc
Q 003776 718 IKKRCNLVAVVAEVDRILRPEG 739 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G 739 (796)
+..+=.+..+|=+|=|+|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4556667889999999999998
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.0089 Score=62.74 Aligned_cols=96 Identities=21% Similarity=0.371 Sum_probs=64.2
Q ss_pred cccccccccccccCccccceeeeccCC-C---eEEEEeecCCCCCChhHHHhh-cccccccccccccCCCCccccccccc
Q 003776 638 GINWSTVRNVMDMRSVYGGFAAAMKDI-S---VWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 638 gi~w~~iRnvmDm~~g~g~faA~l~~~-~---vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
...|..++.|+|+|+|.|.|++++... | +.|+ |-|..+..+.+. .+--+=||+= .++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccHH---hhhcc-ccceeee
Confidence 367899999999999999999999643 3 3443 333223333332 1322334443 44556 9999999
Q ss_pred cccccccC-CcchHHHHHhhcccccCC--cEEEEe
Q 003776 713 HLFSKIKK-RCNLVAVVAEVDRILRPE--GKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~-rC~~~~~l~E~DRiLRP~--G~~i~r 744 (796)
+++-.|.. .|. .||--+=+.|+|| |.++|-
T Consensus 166 ~vLh~~~d~~~~--~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 166 HVLHDWSDEDCV--KILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SSGGGS-HHHHH--HHHHHHHHHSEECTTEEEEEE
T ss_pred hhhhhcchHHHH--HHHHHHHHHhCCCCCCeEEEE
Confidence 99988864 343 4788899999999 999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.045 Score=54.84 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeE-EEE----c--CCCCCCCCCCceeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAI-SAV----M--GTERLPFPGIVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v----~--d~e~LPfpd~SFDlV 457 (796)
+++||++|.|--.++..|... .|...|-....+ ..++....++.... ..+ . ...+.....++||+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 689999999966666655542 677777654333 22233332221100 000 0 012222345689999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+|+.| +.+......+..-|.+.|||.|..++..|--.+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99998 544545577888899999999998776553333
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.1 Score=56.79 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCCCCC-C-CCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERL-P-FPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~e~L-P-fpd~SFDlVvs 459 (796)
.++.+|||+.+|.|.-+.+|+.. .|++.|+++.-+..-+ ..+.+.|+...... .|...+ + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45789999999999877777653 7999999997665554 45556677654444 444333 2 22346999996
Q ss_pred ----cC-CCcccccch----------------HHHHHHHHhhc----CCCcEEEEEeCCC
Q 003776 460 ----AR-CRVPWHIEG----------------GKLLLELNRVL----RPGGFFIWSATPV 494 (796)
Q Consensus 460 ----s~-~~l~w~~d~----------------~~~L~Ei~RVL----KPGG~fv~s~~~~ 494 (796)
+. ..+.-+++. ..+|..+.+.| ||||+++.++...
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 21 112222211 26788899999 9999999997643
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.019 Score=52.40 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred EEECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCC-CCC-CCCCceeEEEEcCC
Q 003776 394 LDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTE-RLP-FPGIVFDAVHCARC 462 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e-~LP-fpd~SFDlVvss~~ 462 (796)
|+||+..|..+..|++. .++++|..+. ...++ +..++.++ .+.+...+.. .++ ++..+||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999887777652 5899999874 11121 22332333 2455555542 222 2357899999865
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-|........|..+.+.|+|||++++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 333345567888999999999999975
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.056 Score=62.55 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERL 447 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~L 447 (796)
+.+..+||+-||||.++..|+++ .|+|+++++..+..|. ..|...|+.+ .++++.++++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchhhc
Confidence 45689999999999999999986 9999999998888776 6677778765 4555534443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.065 Score=56.70 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=60.3
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-------ccccc-ccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-------GLFGI-YHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
=++|||+|||+|+|.-.|...++- .|+-+|.. ++|.--+.. +..-+ +.+|-+-.+ |++-++-.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~Dvs 147 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFDVS 147 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------CceeeeEE
Confidence 457999999999999999877431 22233332 233321111 22111 234544322 33333332
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE-------------------eccH---HHHHHHHHHHhcCCceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV-------------------RDDV---ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~-------------------rd~~---~~~~~~~~~~~~l~W~~~~ 766 (796)
|. .+..+|-.|.++|+| |.+|+ +|.. .++.++...+..+-|.+.-
T Consensus 148 fi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 148 FI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred Ee------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 32 233357788888888 77764 3433 3666677777888888753
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.26 Score=50.91 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHH-------HHHHHHHHcCCCeE-EEEcCCCCCCCCCCceeE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHE-------AQVQFALERGIPAI-SAVMGTERLPFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~-------A~~q~A~ergl~~~-~~v~d~e~LPfpd~SFDl 456 (796)
+++.+|+|+=.|.|.|++.|... .-....+.|..+.. .....+++...... .+-...-.++ +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 57899999999999999988764 11223334433311 11111111111100 0111112222 2334444
Q ss_pred EEE--------cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHC--------ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvs--------s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. +.. +| ......+.+++++.|||||.+++..+
T Consensus 126 ~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 443 321 22 22457899999999999999998754
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.025 Score=58.22 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=70.6
Q ss_pred cccccCccccceeeeccC--CCeEEEEeecCCCC--CChhHHHhhcccccccccccccC---C--CCcccccccccccc-
Q 003776 646 NVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSP--DTLPIIYERGLFGIYHDWCESFS---T--YPRTYDLLHADHLF- 715 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~--~~vwvmnv~p~~~~--~~l~~i~eRGlig~~~~~ce~f~---t--yprtyDl~Ha~~~~- 715 (796)
.+||+|||.|.|.++|.. .+.-++-|=+.... ..+.-+..+||--+.--.|.+.- . -|.+.|.|| -.|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~--i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY--INFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE--EES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE--EeCC
Confidence 799999999999988843 23333344433332 35556777786333222222222 1 146888877 233
Q ss_pred ccc-----cCCcch-HHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhc--CCceEE
Q 003776 716 SKI-----KKRCNL-VAVVAEVDRILRPEGKLIVR-DDVETINELESMVKG--MQWEVR 765 (796)
Q Consensus 716 s~~-----~~rC~~-~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~--l~W~~~ 765 (796)
..| .+|..+ ..+|-++-|+|+|||.+.++ |..++...+...+.. -.++..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 234 235555 57788999999999999986 667777777776655 355544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.26 Score=54.99 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--------------------CeEEEeCChhhHHHHHHHHHHH-----cCCCe-EEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--------------------GVLTMSFAPKDEHEAQVQFALE-----RGIPA-ISAV 441 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvDiSp~dl~~A~~q~A~e-----rgl~~-~~~v 441 (796)
+..-+|+|+||..|..+..+... .|.--|+-..|.+.-....... ...++ ...+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34679999999999877665431 3455566555554322111111 11221 2223
Q ss_pred cC-CCCCCCCCCceeEEEEcCCCccccc
Q 003776 442 MG-TERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 442 ~d-~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
.+ .-.--||+++.|+++|+.+ +||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEech-hhhcc
Confidence 33 2333488999999999986 99964
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.12 Score=56.69 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=66.7
Q ss_pred ccccccccCccccceeeeccCCC---eEEEEeecCCCCCChhHHHhh----cccccccccccccCCCC--cccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSPDTLPIIYER----GLFGIYHDWCESFSTYP--RTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~~~l~~i~eR----Glig~~~~~ce~f~typ--rtyDl~Ha~~ 713 (796)
.-|||||.|||.|=+|-|..+.. |.-.-+=| -.+.++.|- |+--+.+.=+-..+..| +.||+|=|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 68999999999999877666542 33222211 122222221 11100011111112222 4899988432
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEeccHH-HHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE-TINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~-~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
|=. .+..+.=++-|.|+|||++|++--.+ ..+.|..-..+--|.+.-.-. ..|.+.+.-|
T Consensus 238 LA~------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~-~~eW~~i~~k 298 (300)
T COG2264 238 LAE------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE-REEWVAIVGK 298 (300)
T ss_pred hHH------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe-cCCEEEEEEE
Confidence 111 12344557789999999999984332 345556655566777654422 2455555443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.043 Score=57.26 Aligned_cols=29 Identities=10% Similarity=-0.157 Sum_probs=23.1
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeec
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVIS 673 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p 673 (796)
+.|||.|||.|-.|.+|.++ .|+.+=++|
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH
Confidence 57999999999999999887 455554444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.75 Score=50.10 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCEEEEECCCCchhHHHHhh-C-----CeEEEeCChhhHHHHHHHHHHH--cCCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFD-R-----GVLTMSFAPKDEHEAQVQFALE--RGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~-~-----~V~gvDiSp~dl~~A~~q~A~e--rgl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+.+|+=||||.=-++..+.. + .|+++|+++..+..++.-.+.. .+-...+...+...++..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997765555443 2 4889999998877775322212 23344666677666665556899999764
Q ss_pred CCccccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.... +...+|..+.+.++||..+++..
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 233222 66899999999999999999863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.46 Score=53.14 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
+++.+|+-+|+| .|.++..+++ ++|+++|.++. +.+.|++.|........+...+.--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 468899999988 3356767766 38999999874 346666776554333222222221123499999853
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 57788899999999999988554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.49 Score=52.04 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHhCcccccC-CCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 368 NGALHYIDFIQESVPDVAWG-KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~-~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
.++..|+..|.+.|...... ....++||||+|...+-..|.. -+++|.|+++..+..|+....+..++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 34667887777776542211 1246899999998865444443 389999999999988885554432444 3232
Q ss_pred Ec-CC----CCCCCCCCceeEEEEcCC
Q 003776 441 VM-GT----ERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 441 v~-d~----e~LPfpd~SFDlVvss~~ 462 (796)
.. +. ..+-.+...||+.+|+..
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EcCCccccchhhhcccceeeEEecCCc
Confidence 22 11 122234568999999873
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.46 Score=46.72 Aligned_cols=86 Identities=16% Similarity=0.087 Sum_probs=53.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEcCCCccccc-----ch---HHHHHHHHh
Q 003776 411 GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCARCRVPWHI-----EG---GKLLLELNR 479 (796)
Q Consensus 411 ~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss~~~l~w~~-----d~---~~~L~Ei~R 479 (796)
+|+++||-...+...+.++....... +.++..+-+.+. .+.+.+|+|+.++.+++-.. .+ -.+|..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48899999888877775554432222 455555545553 23358999999987666432 11 378889999
Q ss_pred hcCCCcEEEEEeCCCCC
Q 003776 480 VLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 480 VLKPGG~fv~s~~~~~~ 496 (796)
+|+|||++++..-++..
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999998666555
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.24 Score=47.22 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHH
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A 430 (796)
++||+|||.|.++..++.. +|++++.++.+....+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999999888764 59999999988777664433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.077 Score=58.74 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=61.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcccc--c-ccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGLFG--I-YHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGlig--~-~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.=..|||.+||+|+|...+..... .|+-.|.. ..+.. +-.-|+-. + ..|.. .++..+.+||+|=++--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPP 257 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCC
Confidence 334699999999999544332222 22223332 22221 11224433 1 22222 23332468999886533
Q ss_pred ccc---cc---CCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc
Q 003776 715 FSK---IK---KRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762 (796)
Q Consensus 715 ~s~---~~---~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W 762 (796)
|.. .. ....+..+|-++-|+|+|||++++--... ..++.+++.--|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321 11 11335788999999999999988643221 134566777767
|
This family is found exclusively in the Archaea. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.3 Score=46.25 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.+....|..-+..+. .+++.+||=||+.+|+...++..- .+.++++|+.....-. ..|.+|. ++.-+..|+ +
T Consensus 59 SKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~-Ni~PIL~DA-~ 134 (231)
T COG1889 59 SKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRP-NIIPILEDA-R 134 (231)
T ss_pred hHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCC-Cceeeeccc-C
Confidence 344444544443222 256889999999999988888763 5999999998765543 5565552 122233333 3
Q ss_pred CC----CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LP----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LP----fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.| +--...|+|++--+ -.....-+...+..-||+||+++++
T Consensus 135 ~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 33 12246899998542 1223456777899999999988776
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.12 Score=56.68 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=64.9
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhccccccc-ccc-----cccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYH-DWC-----ESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~~c-----e~f~typrtyDl~Ha~~~~ 715 (796)
+=|.|||+|||-|-|.=.|... +-.|+-+=|..-. .+|+-+-+-++|.-. -.. |.+|. ..+||+|-+.|||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 3578999999999998788766 3466666665433 444444444444211 011 33454 6899999988887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
=+ -|-++ ..|.++-..|||||-+||.
T Consensus 193 YH--rr~Pl-~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH--RRSPL-DHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc--cCCHH-HHHHHHHHhhCCCCEEEEE
Confidence 43 33334 4688999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.16 Score=53.80 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred cccccccccCccccc----eeeeccC-CCeEEEEeecCCCCCChhHHHhhcc---ccc-ccccccccCCC-----Ccccc
Q 003776 642 STVRNVMDMRSVYGG----FAAAMKD-ISVWVMNVISIDSPDTLPIIYERGL---FGI-YHDWCESFSTY-----PRTYD 707 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~----faA~l~~-~~vwvmnv~p~~~~~~l~~i~eRGl---ig~-~~~~ce~f~ty-----prtyD 707 (796)
..-++|||+|||+|. +|+++.. -.|..+=.-|.....--..+-.-|+ |-+ .+|..+.++.+ ..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 457899999998885 3444432 2344332222111111112222343 111 22333333321 35899
Q ss_pred ccccccccccccCCcchHHHHHhhcccccCCcEEEEec---------c----H----HHHHHHHHH----HhcCCceEEE
Q 003776 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD---------D----V----ETINELESM----VKGMQWEVRM 766 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd---------~----~----~~~~~~~~~----~~~l~W~~~~ 766 (796)
+|-.+.-- =....++-++=|+|||||.+|+-+ . . .....|+++ ...=+|...+
T Consensus 147 ~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 147 FAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 99755422 123355666679999999999621 0 0 122334443 3344555544
Q ss_pred eeccCCceEEEEEec
Q 003776 767 TYSKDKEGLLCVEKS 781 (796)
Q Consensus 767 ~~~~~~e~~l~~~K~ 781 (796)
.. -.+++++++|.
T Consensus 221 lp--~gdG~~i~~k~ 233 (234)
T PLN02781 221 IS--IGDGVTLCRRL 233 (234)
T ss_pred EE--eCCccEEEEEe
Confidence 31 14688998885
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.018 Score=52.91 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=53.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhc------------ccccccccccccCCCCcccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERG------------LFGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRG------------lig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
.|||++||.|.|+.++...- ..+++=++-....--+..+- +.|=+.++.+.++ +..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 48999999999998887543 22232222221111111111 1222222333344 37899998877
Q ss_pred cccccc-----CCcchHHHHHhhcccccCCcEEEE
Q 003776 714 LFSKIK-----KRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 714 ~~s~~~-----~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
-|.... .+=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 776431 112345778899999999999986
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.079 Score=56.19 Aligned_cols=93 Identities=14% Similarity=0.335 Sum_probs=63.2
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cccccccccc----cCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGIYHDWCES----FSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~~ce~----f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||-|.++-.|.... -+|.-+|.. ..+.++-.+.+ -|+..+|... +-.=--+||.|=|..++...-
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 39999999999999988777 577777876 67777665553 3333333211 110003577766555554443
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|....+.|||||.++++
T Consensus 139 ---dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 139 ---DPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe
Confidence 3456899999999999999997
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.19 Score=51.50 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc----C-CCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----G-IPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er----g-l~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
...+.|+|+|+|.++...+.. +|++++.+|.-. +.|.+. | ........|+....| ...|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-
Confidence 358999999999887766654 899999988543 233332 2 234556677777777 4579999954
Q ss_pred Ccccc---cchHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWH---IEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~---~d~~~~L~Ei~RVLKPGG~fv 488 (796)
+.-. .....++..+...||-+|.++
T Consensus 105 -lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 -LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 2211 133466777777888888776
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.14 Score=58.76 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=52.7
Q ss_pred ccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHH---Hhh-cccc----cccccccccCC--CCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPII---YER-GLFG----IYHDWCESFST--YPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i---~eR-Glig----~~~~~ce~f~t--yprtyDl~Ha 711 (796)
.+||||+||.||++.+|... + -- |+-.|-. ..+..+ ++| |+-- +-.|... ++. -+.+||.|-.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~---v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~-~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQ---VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG-PSQWAENEQFDRILL 315 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCe---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc-ccccccccccCEEEE
Confidence 57999999999999877643 1 11 2222332 333322 232 4310 1112211 111 2467999975
Q ss_pred c------cccccccCCc--------------chHHHHHhhcccccCCcEEEEe
Q 003776 712 D------HLFSKIKKRC--------------NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~------~~~s~~~~rC--------------~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ |+|... ..+ .-..||-++=|+|||||.+|++
T Consensus 316 DaPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 316 DAPCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 333211 000 0146889999999999999987
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.62 E-value=3 Score=44.61 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=56.9
Q ss_pred CCCEEEEECCCCc-hhHHHHhh--CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCC-CCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVA-SFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFP-GIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG-~~a~~La~--~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfp-d~SFDlVvss~~~ 463 (796)
.+++||-||=..- +++..|.. ++|+++|++...+..-. +.|.+.|+++.....|. ..||-. .+.||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 4789999997765 35555543 48999999998776654 78888899987777775 445421 47999999975
Q ss_pred ccccc-chHHHHHHHHhhcCCCc-EEEEE
Q 003776 464 VPWHI-EGGKLLLELNRVLRPGG-FFIWS 490 (796)
Q Consensus 464 l~w~~-d~~~~L~Ei~RVLKPGG-~fv~s 490 (796)
+|.. -...++......||.-| ..+|+
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 4454 33567778888998766 44444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.95 Score=47.20 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred EEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcC-CCCCCCCCCc-eeEEEEcCCCc
Q 003776 393 VLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMG-TERLPFPGIV-FDAVHCARCRV 464 (796)
Q Consensus 393 VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d-~e~LPfpd~S-FDlVvss~~~l 464 (796)
|.||||-.|.+..+|.++ .++++|+++.-+..|+...+ ..++. +.+...| ...|+ .+. .|.|+.+. +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAG--M 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAG--M 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG----GGG---EEEEEE--E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC--CCCCCCEEEEec--C
Confidence 689999999999999986 69999999999998885555 44543 4455555 34443 333 78887654 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-.. -....|.+....++..-.|++.
T Consensus 76 GG~-lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 76 GGE-LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HH-HHHHHHHHTGGGGTT--EEEEE
T ss_pred CHH-HHHHHHHhhHHHhccCCeEEEe
Confidence 211 1245566666777777788886
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.12 Score=55.62 Aligned_cols=90 Identities=18% Similarity=0.492 Sum_probs=61.3
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCCCCh-hHHHhhcc--cccccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTL-PIIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l-~~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
+..++||+|||-|+--+.|... .=.|.-+...... --.-.||+ +++. +|-+. +..||+|-|-+|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL---- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL---- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh----
Confidence 4678999999999988888542 1223333333222 23456884 5544 37542 4679999977665
Q ss_pred CCcch-HHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNL-VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~-~~~l~E~DRiLRP~G~~i~r 744 (796)
+||.- ..+|-+|-+.|+|+|.+||.
T Consensus 162 DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 57876 46788999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.7 Score=49.74 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhh----C-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCCCCCC---CCCCceeEE
Q 003776 387 GKRTRVVLDVGCGVASFGGFLFD----R-GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERLP---FPGIVFDAV 457 (796)
Q Consensus 387 ~~~~~~VLDIGCGtG~~a~~La~----~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~e~LP---fpd~SFDlV 457 (796)
..++.+|||+.+..|.=+.+++. . -|++.|....-+..- .+.+.+.|+.....+ .|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l-~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSL-KANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHH-HHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 35688999999999964444443 2 678888766544333 355666787654443 4445554 554 89999
Q ss_pred EE----cCCCccccc----------c-------hHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HC----ARCRVPWHI----------E-------GGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vs----s~~~l~w~~----------d-------~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+. +...+.+-. + ..++|......++|||+|+.++..+.-
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 84 321122211 0 136778888999999999998765543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.26 Score=52.84 Aligned_cols=122 Identities=14% Similarity=0.255 Sum_probs=78.6
Q ss_pred ccccccccCccccceeeeccCC-C-eEEEEe--ecCCCC-CChhH----HHhhc--ccccccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-S-VWVMNV--ISIDSP-DTLPI----IYERG--LFGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~-vwvmnv--~p~~~~-~~l~~----i~eRG--lig~~~~~ce~f~typrtyDl~Ha 711 (796)
..+.|||+|||.|..+=+|..+ + +=+.-| -+.... ++-.+ .-+|- +=+=+..|+.++.. .+||+|=|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~ 121 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIIC 121 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEe
Confidence 3788999999999766666554 2 333222 111111 11111 22222 12333456666654 46999876
Q ss_pred cccccc---------------ccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEE
Q 003776 712 DHLFSK---------------IKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 712 ~~~~s~---------------~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~ 766 (796)
+-=|=. +...|.+++++-=-=++|+|||++.+=-..+.+..|-.++++++|...-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 654421 2345777888888899999999999887788899999999999999754
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.28 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHhhcccccCCcEEEEeccHH
Q 003776 725 VAVVAEVDRILRPEGKLIVRDDVE 748 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~rd~~~ 748 (796)
..+|.|.-=+||+||.++.--++.
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeHH
Confidence 367889999999999999754443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.21 Score=53.48 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccccccCccccceeeeccCCCeEE------EEeecCCC-CCChhHHHhhcc-cccccc----c-c---cccCCCCccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWV------MNVISIDS-PDTLPIIYERGL-FGIYHD----W-C---ESFSTYPRTYDL 708 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwv------mnv~p~~~-~~~l~~i~eRGl-ig~~~~----~-c---e~f~typrtyDl 708 (796)
=.+|||.||+|=.|=.++++ |-. =+|+-.|- +.+|.+...|-. -|++-+ | | |.+|+-..+||+
T Consensus 102 m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 45999999999666555432 111 12222232 367776655542 122222 2 2 445533489998
Q ss_pred cccccccccccCCc-chHHHHHhhcccccCCcEEEEeccH
Q 003776 709 LHADHLFSKIKKRC-NLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC-~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
.--..= ...| .+...|-|+-|||+|||.|.+=+-.
T Consensus 181 yTiafG----IRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 181 YTIAFG----IRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred EEEecc----eecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 652221 1223 3678899999999999988875443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.22 Score=49.31 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=35.8
Q ss_pred ccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 696 CESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 696 ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
++.+|.-+.+||+|=+..++..+. ....+|-||-|+|+|||.++|-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 455665457999997666555443 345679999999999999998654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.15 Score=58.90 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=54.6
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hccc---ccccccccccCCCCccccccccc-
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLF---GIYHDWCESFSTYPRTYDLLHAD- 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~~ce~f~typrtyDl~Ha~- 712 (796)
.+|||||||.|+++.+|... +- .|+-+|-. ..+..+-+ .|+- -+-+|.......++++||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999998877653 22 22222332 33333322 2431 12344443333455789998543
Q ss_pred -----ccccc-----cc-CCcch-------HHHHHhhcccccCCcEEEEe
Q 003776 713 -----HLFSK-----IK-KRCNL-------VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 -----~~~s~-----~~-~rC~~-------~~~l~E~DRiLRP~G~~i~r 744 (796)
+++.. |. ..-.+ ..+|-+.=|+|||||.+|+.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22221 10 00111 35788899999999999975
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.13 Score=55.45 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=54.2
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhh-----c-----ccccc-cccccccCCCCccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYER-----G-----LFGIY-HDWCESFSTYPRTYDL 708 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eR-----G-----lig~~-~~~ce~f~typrtyDl 708 (796)
..-|+||++|||.|+++..++.++ + .+|+-++.. .-+..+-+. | -+-+. .|-.+-+...+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 456799999999999998887664 3 223333332 222221111 1 01111 1222212233678999
Q ss_pred cccccccccccCCcc--hHHHHHhhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKKRCN--LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~r 744 (796)
|=.+... .+...-. ...++-.+-|+|+|||.+++.
T Consensus 149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8655432 1211111 234556788999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.15 Score=53.48 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=52.3
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChh-HHHhhcccccc--------------cccccccCCC---C-cc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP-IIYERGLFGIY--------------HDWCESFSTY---P-RT 705 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~~ce~f~ty---p-rt 705 (796)
.|||.|||.|--|.+|.++..=| +-+|-. .-+. ++-++|+.... +-+|.-|..+ + -+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V---~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEV---LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeE---EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 69999999999999999875433 333322 1122 24466664221 1122211111 1 24
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
||+|-...+|... ....-..++-.|-|+|+|||.+++
T Consensus 117 fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5555543333322 222335778999999999996443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.55 Score=54.14 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=26.4
Q ss_pred HHHHHhhcccccCCcEEEEec----cHHHHHHHHHHHhcC-Cce
Q 003776 725 VAVVAEVDRILRPEGKLIVRD----DVETINELESMVKGM-QWE 763 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~rd----~~~~~~~~~~~~~~l-~W~ 763 (796)
..||-++=|+|||||++|+.. ..+....|..+++.. .|+
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 578899999999999999762 223445566655443 354
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.1 Score=47.95 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.++++.+...++ ...+|||||||.=-++...... .++|+||+..++..-. .+....+++....+.|...
T Consensus 93 d~fY~~if~~~~------~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIP------PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTT
T ss_pred HHHHHHHHhcCC------CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeec
Confidence 444555544443 3789999999999888876653 7999999997765554 4555567777777776433
Q ss_pred CCCCCCceeEEEEcC
Q 003776 447 LPFPGIVFDAVHCAR 461 (796)
Q Consensus 447 LPfpd~SFDlVvss~ 461 (796)
-+ +....|+++..-
T Consensus 166 ~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 166 DP-PKEPADLALLLK 179 (251)
T ss_dssp SH-TTSEESEEEEET
T ss_pred cC-CCCCcchhhHHH
Confidence 22 346799998854
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.79 Score=53.51 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh------C--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD------R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~------~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
..|.+++|.-. .+...+|+-+|+|.|-+..+.++ + .+++++-.|..+..-+...-..-.-.+.++-.|+..
T Consensus 354 ~AL~Drvpd~~-a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 354 KALLDRVPDES-AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK 432 (649)
T ss_pred HHHHhhCcccc-cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc
Confidence 33444444422 12256789999999977665544 2 688898888655433321111122345667778888
Q ss_pred CCCCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv 488 (796)
++-|....|++++-+..-.-...+ +.+|.-+.+.|||+|..|
T Consensus 433 w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 433 WNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 875568899999854111112233 799999999999999887
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.31 Score=56.00 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=53.7
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHH---Hhh-cc-c-ccccccccccCCC-Cccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPII---YER-GL-F-GIYHDWCESFSTY-PRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i---~eR-Gl-i-g~~~~~ce~f~ty-prtyDl~Ha~~~ 714 (796)
..|||+|||.|+++.+|... +.- |+-.|.. ..+..+ +.| |+ + =+.+|.......+ +.+||+|=.+--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~---v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQ---VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCE---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 46999999999999887653 112 2333332 333322 222 32 1 1223443322222 367999874442
Q ss_pred ccc-----------ccCC--------cchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSK-----------IKKR--------CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~-----------~~~r--------C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
++. |... .....+|-..=|+|+|||+++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 221 1000 11236788999999999999986
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.13 Score=57.08 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=46.7
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-.|||+|||.|.+++.|... .-.|+.|-... .-+.. +-..|+ .=+..|..+..+. ...||+|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~- 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV- 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC-
Confidence 36999999999999888642 11222222211 22221 222343 1122333332222 24699988542
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+..+.-.+-|+|+|||.+++-
T Consensus 158 --------g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 --------GVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred --------chHHhHHHHHHhcCCCCEEEEE
Confidence 2223333456799999998874
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.66 Score=52.06 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=48.9
Q ss_pred ccccCcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh------------CCeEEEeC
Q 003776 350 VKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD------------RGVLTMSF 417 (796)
Q Consensus 350 ~~~~g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~------------~~V~gvDi 417 (796)
....|++++-|.-+..|......+.-.+.+.+.. +....+++||.|+|.++.-|++ ..+..+++
T Consensus 42 ~G~~GDFiTApels~lFGella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 42 IGRKGDFITAPELSQLFGELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred ccccCCeeechhHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 3445677777777778877666665444444432 3466899999999998887764 16888999
Q ss_pred ChhhH
Q 003776 418 APKDE 422 (796)
Q Consensus 418 Sp~dl 422 (796)
|+...
T Consensus 118 s~~L~ 122 (370)
T COG1565 118 SPELR 122 (370)
T ss_pred CHHHH
Confidence 99543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.18 Score=54.87 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=55.3
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc-----cc-cccccccccCCCCcccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL-----FG-IYHDWCESFSTYPRTYD 707 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl-----ig-~~~~~ce~f~typrtyD 707 (796)
..-++||++|||.|+++..++++ ++- +|+-++-- ..+.++-+. |+ +- +..|-..-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999988876 443 33333332 222222111 11 11 12222221222346899
Q ss_pred ccccccccccccCCcc--hHHHHHhhcccccCCcEEEEe
Q 003776 708 LLHADHLFSKIKKRCN--LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~r 744 (796)
+|=.+. +..+..-=. -..++-.+-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986542 222211001 134566889999999999985
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.2 Score=46.48 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCCh
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAP 419 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp 419 (796)
.-.+.|||||.|.+...|+.. -++|++|--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 346899999999999988875 688887744
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.21 Score=56.30 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=72.4
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh--------hc------ccccccccccccCCCCccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE--------RG------LFGIYHDWCESFSTYPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e--------RG------lig~~~~~ce~f~typrty 706 (796)
..-|+||++|||.|+.+..++.++- +.+|+-++-- .-+.++-. +| +--++.|-.+-+..-++.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4578999999999998888887641 1233333332 22332222 11 1112223222223335689
Q ss_pred cccccccccccccCC---cchHHHHHhhcccccCCcEEEEecc-----HHHHHHHHHHH-hcCCceEEEee---ccC-Cc
Q 003776 707 DLLHADHLFSKIKKR---CNLVAVVAEVDRILRPEGKLIVRDD-----VETINELESMV-KGMQWEVRMTY---SKD-KE 773 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~r---C~~~~~l~E~DRiLRP~G~~i~rd~-----~~~~~~~~~~~-~~l~W~~~~~~---~~~-~e 773 (796)
|+|=.+- +...... ---..++-.+-|+|+|||.+++... ..++..+.+.+ +...|...... +-+ .=
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9988762 2221111 1113467788999999999988633 22323333333 34444433321 111 13
Q ss_pred eEEEEEeccc
Q 003776 774 GLLCVEKSMW 783 (796)
Q Consensus 774 ~~l~~~K~~w 783 (796)
.++++.|...
T Consensus 307 gF~~as~~~~ 316 (374)
T PRK01581 307 GFHIAANSAY 316 (374)
T ss_pred EEEEEeCCcc
Confidence 5777777544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.45 Score=54.99 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=51.4
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH---H-hhcc---cccccccccccCCCCccccccccc-
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII---Y-ERGL---FGIYHDWCESFSTYPRTYDLLHAD- 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i---~-eRGl---ig~~~~~ce~f~typrtyDl~Ha~- 712 (796)
..|||++||.|+++.+|... .- .|+-+|.. .-+..+ + ..|+ --+.+|.....+ +.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcC
Confidence 46999999999987665431 11 22233333 233222 2 2343 122234332221 3579988643
Q ss_pred -----ccccc-----cc-CCcch-------HHHHHhhcccccCCcEEEEe
Q 003776 713 -----HLFSK-----IK-KRCNL-------VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 -----~~~s~-----~~-~rC~~-------~~~l~E~DRiLRP~G~~i~r 744 (796)
++|.. |. ..-.+ ..||-++=|+|||||.+++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 22211 11 00111 35899999999999999997
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.22 E-value=4.3 Score=45.85 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=68.8
Q ss_pred HHHHhCccccc-CCCCCEEEEECCCCchhHHHHhhC--------CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCC
Q 003776 376 FIQESVPDVAW-GKRTRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTE 445 (796)
Q Consensus 376 ~L~e~Lp~i~~-~~~~~~VLDIGCGtG~~a~~La~~--------~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e 445 (796)
....++|.+.. .+++.+|||+-+..|+=++.|++. .|++=|+++.-++.-..+. .....+. .....+..
T Consensus 141 eavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 141 EAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNHDAS 219 (375)
T ss_pred hhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecccce
Confidence 34555655433 267899999999999888777652 5777788776554443333 2111111 11111111
Q ss_pred CC---------CCCCCceeEEEEc-CCC---cc----------ccc----c----hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 446 RL---------PFPGIVFDAVHCA-RCR---VP----------WHI----E----GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 446 ~L---------Pfpd~SFDlVvss-~~~---l~----------w~~----d----~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.. +.....||-|+|- .|. .+ |.. + ...+|+.-.|+|||||.++.|+...
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 2344579999872 110 00 100 0 1257788889999999999986644
Q ss_pred CC
Q 003776 495 YQ 496 (796)
Q Consensus 495 ~~ 496 (796)
..
T Consensus 300 np 301 (375)
T KOG2198|consen 300 NP 301 (375)
T ss_pred Cc
Confidence 33
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.25 Score=54.57 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=54.6
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCC------CChhHHHhhcc----cc-cccccccccCCC-Cccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP------DTLPIIYERGL----FG-IYHDWCESFSTY-PRTYDL 708 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~------~~l~~i~eRGl----ig-~~~~~ce~f~ty-prtyDl 708 (796)
...++||++|||.|+.+..|.+++ |.-+-+|=.|.. ..++.+ ..|+ +- +..|=.+-.... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 457899999999999999998774 432222222210 111111 0111 11 112211111222 468999
Q ss_pred cccccccccccCCcch--HHHHHhhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKKRCNL--VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~--~~~l~E~DRiLRP~G~~i~r 744 (796)
|-.+. +......-.+ ..++-.+-|.|+|||.+++.
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98653 3333221111 34567889999999999873
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.54 Score=50.52 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred cccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH---Hhh-cc--cccc-cccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII---YER-GL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i---~eR-Gl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.||||+||.|+++.+|... .-- |+-.|.. .-+..+ ++| |+ |-++ +|. ..++.....||.|-.+-=
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~---v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGA---IVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAP 149 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCE---EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCC
Confidence 5999999999998766432 112 3333433 333322 222 33 1122 222 223333345888864432
Q ss_pred cccc-------------cCC-c-----chHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKI-------------KKR-C-----NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~-------------~~r-C-----~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.|.. ..+ . ....||-.+=|+|||||++|.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 000 0 1135888899999999999986
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.4 Score=50.80 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=69.8
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC--CChhHHHhhcc--cccc-cccccccCCCC-c-ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP--DTLPIIYERGL--FGIY-HDWCESFSTYP-R-TYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~--~~l~~i~eRGl--ig~~-~~~ce~f~typ-r-tyDl~Ha~~~~ 715 (796)
..+|++|||.|.|-+.|... .+-.+-|-+...- .-+.-|-+.|| |-++ ||=-+-+..++ . +.|-|+ -.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~--i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY--INF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE--EEC
Confidence 37899999999999988654 2333444443332 45556778887 4444 23233333333 3 788877 334
Q ss_pred c-ccc-----CCcch-HHHHHhhcccccCCcEEEEe-ccHHHHHH-HHHHH
Q 003776 716 S-KIK-----KRCNL-VAVVAEVDRILRPEGKLIVR-DDVETINE-LESMV 757 (796)
Q Consensus 716 s-~~~-----~rC~~-~~~l~E~DRiLRP~G~~i~r-d~~~~~~~-~~~~~ 757 (796)
. .|- +|=.+ ...|-++-|+|+|||.+.+. |...+.+. +...+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 3 452 23233 57788999999999999996 55556555 55544
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.74 Score=47.99 Aligned_cols=132 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCCCCh-h----HHHhhcc----cccccccccc-------cCCCCccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTL-P----IIYERGL----FGIYHDWCES-------FSTYPRTYDL 708 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l-~----~i~eRGl----ig~~~~~ce~-------f~typrtyDl 708 (796)
.||.+|+|+|--|+++... |- +-.-|+|-...+ . -|.+.|+ .++.-|-+.+ -+.++..||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999876666432 32 234577766333 3 2445564 3333333333 2335789998
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEe------------------------cc---HHHHHHHHHHHhcCC
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR------------------------DD---VETINELESMVKGMQ 761 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r------------------------d~---~~~~~~~~~~~~~l~ 761 (796)
|-+..++-. .+.-...-+|-..-|+|+|||.+++- |- ..-++.|..+|..-.
T Consensus 106 i~~~N~lHI-~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHI-SPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHh-cCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 876665532 22223467899999999999999972 10 013567888887766
Q ss_pred ceEEEe-eccCCceEEEEEe
Q 003776 762 WEVRMT-YSKDKEGLLCVEK 780 (796)
Q Consensus 762 W~~~~~-~~~~~e~~l~~~K 780 (796)
+...-. +=--...+||++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 654321 1112468999987
|
The function of this family is unknown. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.4 Score=45.52 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CC----------CCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GT----------ERLPFPG 451 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~----------e~LPfpd 451 (796)
.++.+|||+||.+|+++.-..++ -|.|+|+-... .-.|.. ++.+ |. +. +|+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~--~i~~~dvtdp~~~~ki~e~--lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGAT--IIQGNDVTDPETYRKIFEA--LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcc--cccccccCCHHHHHHHHHh--CCC
Confidence 46889999999999999888775 58888873311 112221 1111 21 22 356
Q ss_pred CceeEEEEcCCCccccc-----chH-------HHHHHHHhhcCCCcEEEEEe
Q 003776 452 IVFDAVHCARCRVPWHI-----EGG-------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~-----d~~-------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
...|+|+|-+ .+... |.. .+|.-....|+|+|.|+.-.
T Consensus 135 r~VdvVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 RPVDVVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcccEEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 7899999965 22211 111 23333446688999999753
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.45 Score=54.92 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=53.2
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHH---hh-ccc---ccccccccccC-CCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIY---ER-GLF---GIYHDWCESFS-TYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~---eR-Gli---g~~~~~ce~f~-typrtyDl~Ha~ 712 (796)
..||||+||.||.+.+|... .- .|+-.|-. .-|..+- +| |+- -+.+|... ++ ..+..||+|=++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 46999999999988766542 22 23333433 3444332 22 431 22334432 23 224679998654
Q ss_pred ccccccc---CC--------------c--chHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIK---KR--------------C--NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~---~r--------------C--~~~~~l~E~DRiLRP~G~~i~r 744 (796)
---|... .+ + .-..||-..=++|+|||+++++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3222111 00 0 1135688888999999999986
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=0.44 Score=52.34 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=71.6
Q ss_pred ccccccccCccccceeeeccC----CCeEEEEeecCCCCCCh-hHHH--hhcccc----cccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKD----ISVWVMNVISIDSPDTL-PIIY--ERGLFG----IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~----~~vwvmnv~p~~~~~~l-~~i~--eRGlig----~~~~~ce~f~typrtyDl~Ha 711 (796)
.-+.|+|+|||-|++.|.++- ...-+.|+-.......+ .-.+ +.||=. ..+|..+..+ ....||+|-+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 568899999998877554432 22333444332222111 1112 233311 1233333221 1367999986
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc---HHHHHHHHHHHhcCCceEEEeeccCC---ceEEEEEecc
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD---VETINELESMVKGMQWEVRMTYSKDK---EGLLCVEKSM 782 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~---~~~~~~~~~~~~~l~W~~~~~~~~~~---e~~l~~~K~~ 782 (796)
. .+-.+ .+=.-..+|-.+=|.|||||++++|-- ..++-.+-....-=.|++....|-.. .-+++++|.-
T Consensus 202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 6 33222 112235678888999999999999841 11221111111111788766644332 4588888865
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=86.15 E-value=0.54 Score=47.37 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=52.6
Q ss_pred cccccccccCcccc--ceeeeccCCCeEEEEeecCCCCCChh---HHHhh------c-cccccccccccc--CC-CCccc
Q 003776 642 STVRNVMDMRSVYG--GFAAAMKDISVWVMNVISIDSPDTLP---IIYER------G-LFGIYHDWCESF--ST-YPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g--~faA~l~~~~vwvmnv~p~~~~~~l~---~i~eR------G-lig~~~~~ce~f--~t-yprty 706 (796)
.+-++||..|||.| |++|+... ....|+-+|.+..|+ .-.++ + +--...+|.+.. .. -++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 35678999999988 77777761 123344445443333 22222 2 344567898754 11 14689
Q ss_pred cccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 707 DLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|+|-|+.|+=.. =.+..++-=+.++|.|+|-+++.
T Consensus 121 D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEE
T ss_pred CEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEE
Confidence 999987766432 23456666689999999998874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.93 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=11.5
Q ss_pred HHHHHHhhccccc---ceeeeccccc
Q 003776 618 FTADYEHWKRVVS---KSYLNGMGIN 640 (796)
Q Consensus 618 F~eD~e~Wk~rV~---~tY~~~lgi~ 640 (796)
|.+| +.|.+||. .+|++.+.++
T Consensus 4376 fkkd-kiwmrr~kpskr~yqvmisid 4400 (4600)
T COG5271 4376 FKKD-KIWMRRVKPSKRTYQVMISID 4400 (4600)
T ss_pred hccc-ceeeeecCCccceeEEEEEec
Confidence 4433 56766654 2466655543
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.50 E-value=1.9 Score=45.84 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred ccccCCCCc-cccccHHHHHHHHHHhCccccc--CCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHH
Q 003776 356 YLTFPGGGT-QFKNGALHYIDFIQESVPDVAW--GKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQ 428 (796)
Q Consensus 356 ~~~Fpgggt-~F~~~a~~yid~L~e~Lp~i~~--~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q 428 (796)
+|.||.+-- .-.+++..|+..|.++|..-.. .++..++||||.|.-.+-..|--+ +.+|.|+++..++.|+.-
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHH
Confidence 344554421 1235667888777777654221 134568999998876443333222 789999999888888755
Q ss_pred HHHHcCCCe--EEEEc-CCCC----CCCCCCceeEEEEcCCCcccc
Q 003776 429 FALERGIPA--ISAVM-GTER----LPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 429 ~A~ergl~~--~~~v~-d~e~----LPfpd~SFDlVvss~~~l~w~ 467 (796)
.....++.. .+... +... +--..+.||++.|+.. +|-+
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPP-Fh~s 166 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPP-FHDS 166 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCC-cchh
Confidence 544434432 22222 1111 1123578999999974 4433
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.63 Score=46.84 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCceeEEEEcCCCccccc---------ch---HHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 451 GIVFDAVHCARCRVPWHI---------EG---GKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~---------d~---~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
.++||.+.|..+ + .|. |+ ...+.++.++|||||.|++++|.+.+.
T Consensus 61 ~~~fD~~as~~s-i-Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 61 AGSFDFAASFSS-I-EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred hccchhhheech-h-ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 367999888542 3 222 22 478889999999999999998877654
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.89 E-value=11 Score=44.55 Aligned_cols=118 Identities=18% Similarity=0.111 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
.+.+.+|.+.+.. .+..+|+|-.||+|++.....+ ..+.|.++.+.....++..... +|+. +...
T Consensus 172 ~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~ 246 (489)
T COG0286 172 REVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIR 246 (489)
T ss_pred HHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccc
Confidence 4556777777654 3456999999999976554332 2478889888777666644443 3444 2333
Q ss_pred EcCCCCCC-C----CCCceeEEEEcCCC--cccccc----------------------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 441 VMGTERLP-F----PGIVFDAVHCARCR--VPWHIE----------------------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 441 v~d~e~LP-f----pd~SFDlVvss~~~--l~w~~d----------------------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+...-| + ....||+|+++... ..|... ...++..+.+.|+|||+..+..
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 33332222 2 34679999997632 122211 1367888999999999666554
Q ss_pred CC
Q 003776 492 TP 493 (796)
Q Consensus 492 ~~ 493 (796)
+.
T Consensus 327 ~~ 328 (489)
T COG0286 327 PD 328 (489)
T ss_pred cC
Confidence 43
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=84.86 E-value=3.9 Score=44.08 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC---CC-CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---RL-PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e---~L-Pfpd~SFDlVvs 459 (796)
..+.+||..|+| .|.++..++++ +|++++.++... +.+++.|+...+...... .+ ....+.+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-----ELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-----HHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 346788888876 46676666664 677777766432 344445553222111100 00 123457999986
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... ....+.++.+.|+++|.|+..
T Consensus 239 ~~g-------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 239 FVG-------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 431 246788999999999999965
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=84.66 E-value=0.81 Score=50.73 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=51.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-c------cccccc-ccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-F------GIYHDW-CESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-i------g~~~~~-ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++..|..+.. +|+-+|-. .-|.++-+|.- . +...+| +..+...+.+||+|=+.+++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999987642 44555554 55555555421 0 111111 12233346889998776666
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEE
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
-.+... .+..++-.+-++ .|||.+|
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 544321 122344445443 4555544
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.63 E-value=2.9 Score=44.74 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP- 448 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP- 448 (796)
+.|.--+.+| +.+++.+||=||++.|+...+...- -|+++++++..- ...+..|.+| .+++-++-|+ +.|
T Consensus 143 A~I~gGvdni-hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDA-rhP~ 218 (317)
T KOG1596|consen 143 AGILGGVDNI-HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDA-RHPA 218 (317)
T ss_pred HHhhcCccce-eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccC-CCch
Confidence 3343334433 2357899999999999877777653 689999987432 2233445544 2333344443 233
Q ss_pred ---CCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEEEEe
Q 003776 449 ---FPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 ---fpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.-...|+|++-. . +++. ..+.......||+||.|+++.
T Consensus 219 KYRmlVgmVDvIFaDv---a-qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 219 KYRMLVGMVDVIFADV---A-QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred heeeeeeeEEEEeccC---C-CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1224688888754 2 2333 455667889999999999884
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.51 Score=44.53 Aligned_cols=37 Identities=24% Similarity=0.658 Sum_probs=27.4
Q ss_pred ceeEEEEcCCCcccc-c---c--hHHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWH-I---E--GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~-~---d--~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.||+|+|.. ..-|. . | +..+|+.+++.|+|||+|++.
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 389999953 34442 2 2 257899999999999999987
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=4.6 Score=44.44 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC--CCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--TERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d--~e~LPfpd~SFDlVvss~ 461 (796)
++.+||-+||| .|.++..+++. .|++++.++. +.+++++.|....+...+ ...+....+.||+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 46789989875 33444445542 4778887653 345666666543221111 111111123589998753
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. ....+....++|||||.+++..
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2 2357788899999999999764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=0.81 Score=52.30 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=63.2
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhccc-c----cccccccccCCC---Ccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGLF-G----IYHDWCESFSTY---PRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGli-g----~~~~~ce~f~ty---prtyDl~Ha 711 (796)
++|||++||+|+|+.++....- -.|+-+|.. .-+..+- .-|+= . +..|..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999855332321 122333333 2222211 11331 1 112333322222 247999886
Q ss_pred cccc-cccc-----CCcchHHHHHhhcccccCCcEEEEec------cHHHHHHHHHHHhcCCceEEEe
Q 003776 712 DHLF-SKIK-----KRCNLVAVVAEVDRILRPEGKLIVRD------DVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 712 ~~~~-s~~~-----~rC~~~~~l~E~DRiLRP~G~~i~rd------~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
+--+ +.-. ....+..|+.-.-++|+|||++++-. .....+.+.+-+..-..++++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6432 1111 01235566666779999999999842 2335555666666555555543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=1.4 Score=52.10 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-cc------------cc-cccccccccCCCCccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-GL------------FG-IYHDWCESFSTYPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gl------------ig-~~~~~ce~f~typrty 706 (796)
.+-+.|||+|||.|+.+..+.+++- |-.|+-++-. .-+.++-+. .| +- +..|-.+-+...++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3568899999999999887776642 0122222221 222222110 00 11 1122222223346789
Q ss_pred cccccccccccccCC-cch--HHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceE
Q 003776 707 DLLHADHLFSKIKKR-CNL--VAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEV 764 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~r-C~~--~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~ 764 (796)
|+|-.+- ....... ..+ ..++-.+-|+|+|||.+++.. ..+.+..+.+.++.....+
T Consensus 375 DvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 9998762 2222111 111 235557789999999999842 2445555666665554443
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=82.70 E-value=5.8 Score=44.55 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-----C-CC-CCCce
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-----L-PF-PGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-----L-Pf-pd~SF 454 (796)
.++.+||.+|||. |.++..++++ .|++++.++..+ +++++. +.. .+...... + .+ ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-----~~~~~~~~~~--vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-----EMARSHLGAE--TINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHcCCcE--EEcCCcchHHHHHHHHHcCCCCC
Confidence 3467999999987 7777777664 378887776443 444444 321 11111111 1 12 22369
Q ss_pred eEEEEcCCC----c----------ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARCR----V----------PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~~----l----------~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+|+-.... + +-+.+....+.++.++|+|+|.+++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999874210 0 111245678999999999999999763
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.5 Score=46.20 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=91.1
Q ss_pred ccccccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCcccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha 711 (796)
+.-..+|.|.|+|||.|---+.|..+ |.=+ +.=+|+. +-|--+..|+ ..|=+++||-.-+ .|||-|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhh
Confidence 34467999999999999887777654 3322 2234554 6777788887 3688999986555 899999
Q ss_pred ccccccccCCcc-hHHHHHhhcccccCCcEEEEe--ccHH--HHHHHHHHHhcCCceEEEee------------------
Q 003776 712 DHLFSKIKKRCN-LVAVVAEVDRILRPEGKLIVR--DDVE--TINELESMVKGMQWEVRMTY------------------ 768 (796)
Q Consensus 712 ~~~~s~~~~rC~-~~~~l~E~DRiLRP~G~~i~r--d~~~--~~~~~~~~~~~l~W~~~~~~------------------ 768 (796)
+-+|--.-..-. +..+|- -|+|||.+-+. |+.+ .-..|.+.++..-|...+.+
T Consensus 99 NAvlqWlpdH~~ll~rL~~----~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVS----QLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhccccHHHHHHHHH----hhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 998876554433 333333 48999999986 3333 23346667776677654432
Q ss_pred ccCCceEEEEEecccCCC
Q 003776 769 SKDKEGLLCVEKSMWRPK 786 (796)
Q Consensus 769 ~~~~e~~l~~~K~~w~~~ 786 (796)
.....+|=||.+.|-.+-
T Consensus 175 a~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 175 APLACRVDIWHTTYYHQL 192 (257)
T ss_pred CcccceeeeeeeeccccC
Confidence 112456888888887653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.02 E-value=1.8 Score=45.84 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=74.0
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCCCChhHHHhhcccc--cccccccccCCCCccccccccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSPDTLPIIYERGLFG--IYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~~~l~~i~eRGlig--~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
..-+-|||+|||.|--++.|.+.. +|| -| --++.-|.++.+|-+=| ++.|.-+.+|+-|-|||=+-.-+-..-+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh~wi-Gv--DiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGHQWI-GV--DISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCceEE-ee--cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 367889999999999999998875 443 22 12236777777754432 4567779999999999965432222112
Q ss_pred c---CCcc-----hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc
Q 003776 719 K---KRCN-----LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762 (796)
Q Consensus 719 ~---~rC~-----~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W 762 (796)
| +.|. |..++-=+-..|.+|+-.++.=-++....++.|...-.|
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~ 177 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMK 177 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHh
Confidence 2 1222 233444577899999999998444333344444433333
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.74 E-value=10 Score=40.85 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCC----CCCCCCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGT----ERLPFPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~----e~LPfpd~SFD 455 (796)
...+++|+|.|+..-++.|.. +.++.+|++...+.....+.+.+. ++++.-...+. ..+| ...--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 367999999999987777664 278999999977766655555443 44444333432 2233 22222
Q ss_pred EEEEcCCCccc-cc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPW-HI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w-~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++...+.+-. .+ +-..+|.++..+|+||-+|++.+.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 33222221222 22 336788999999999999998743
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.2 Score=45.85 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=61.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC----CChhHHHhh-cccc----cccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP----DTLPIIYER-GLFG----IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~----~~l~~i~eR-Glig----~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+|||.|||-|.+--.|.+...-- -++-+|=. .-.+-|.+| |+-- .-.|+-.| -..+.-|||||--+-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 79999999999888887653100 01111111 122334454 4321 11233333 33457899999777776
Q ss_pred ccc-----CCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHH
Q 003776 717 KIK-----KRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESM 756 (796)
Q Consensus 717 ~~~-----~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~ 756 (796)
.+. ..-.+..++==++|+|+|||.|+|..=.=+..++.+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 431 1112234566689999999999997444334444333
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.45 E-value=2.5 Score=47.29 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-----CCCCC-CceeEE
Q 003776 390 TRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-----LPFPG-IVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-----LPfpd-~SFDlV 457 (796)
+.+||-+|||+ |.++..+++. .|+++|.++.- +++|++. +........ ... +.... ..||+|
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~-~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPS-EDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCc-cccHHHHHHHHhCCCCCCEE
Confidence 44999999995 5555555553 78999988754 4555553 222111111 110 01111 369999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+=.-. ...++.++.+++||||.+++...+...
T Consensus 243 ie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG-------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC-------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86542 346899999999999999987665544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.52 E-value=22 Score=37.77 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
+..+.+.++. +.++.||||=.|++..+|.+. .+++.|+.+.-+..|...+......+........-..++
T Consensus 7 L~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 7 LTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 3445555553 456999999999999999875 789999999988888755554433332222222223344
Q ss_pred CC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 450 PG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 450 pd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. ..+|+|+... +--. -....|.+-..-|+-=-+|++.
T Consensus 81 ~~~d~~d~ivIAG--MGG~-lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAG--MGGT-LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeC--CcHH-HHHHHHHHhhhhhcCcceEEEC
Confidence 43 3789888754 2211 1235555555555533456654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=80.16 E-value=7.9 Score=40.56 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=49.7
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC----C---C-CCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL----P---F-PGI 452 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L----P---f-pd~ 452 (796)
++.+|+++|.-.|.-+..++. ..|+++|+.....+....+. .-....+.++.++..+. + . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 367999999999876654432 48999999654433222111 01123356666654322 1 1 123
Q ss_pred ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.-.+|+--. -|.+......|.-...+|+||+|+++.
T Consensus 111 ~~vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 111 HPVLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SSEEEEESS------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CceEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 445666543 455667788888899999999999975
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 796 | ||||
| 2avn_A | 260 | Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYN | 1e-04 |
| >pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS Methyltransferase-Related Protein (Tm1389) From Thermotoga Maritima Msb8 At 2.35 A Resolution Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 796 | |||
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-12 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 6e-11 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 8e-11 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 1e-10 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-10 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 3e-10 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 3e-10 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 5e-10 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 9e-10 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-09 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-09 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 3e-09 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 4e-09 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 6e-09 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 6e-09 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 8e-09 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 8e-09 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-08 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-08 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-08 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-08 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 1e-07 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 4e-07 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 5e-07 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 5e-07 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 7e-07 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 9e-07 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-06 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 2e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 6e-06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 6e-06 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 7e-06 | |
| 4aco_A | 956 | Centromere DNA-binding protein complex CBF3 subun; | 2e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-05 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 2e-05 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 2e-05 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 6e-05 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 8e-05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 9e-05 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 1e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 3e-04 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 4e-04 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 5e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 5e-04 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 7e-04 |
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 32/164 (19%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK---------DE 422
+ +++ + VL+ GCG+ G T+ A D
Sbjct: 20 EQAETLEKLLHHDTVYPPGAKVLEAGCGI----------GAQTVILAKNNPDAEITSIDI 69
Query: 423 HEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLE 476
++ A E GI + + LPF FD + C V H+ + L
Sbjct: 70 SPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV--CFVLEHLQSPEEALKS 127
Query: 477 LNRVLRPGGFFI-----WSATPVYQKLPEDVEIWNAMSQLIKAM 515
L +VL+PGG + + + + +E WN + ++ M
Sbjct: 128 LKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 6e-11
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGV----LTMSFAPKDEHEAQVQF 429
I+ ++ + + K+ VLD+ CGV F L D G + +S E ++
Sbjct: 25 IETLEPLLM--KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS-------EDMIRK 75
Query: 430 ALER----GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLR 482
A E V +L F FD V H E ++ E+ RVL+
Sbjct: 76 AREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF--IDSIVHFEPLELNQVFKEVRRVLK 133
Query: 483 PGGFFIWSATPVYQKLPEDVEIWNA 507
P G FI T + + LP E
Sbjct: 134 PSGKFIMYFTDLRELLPRLKESLVV 158
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 8e-11
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 31/132 (23%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQV---- 427
Y+ F+ +V + ++D GCG G L + P ++
Sbjct: 8 DYVSFLVNTVWKITKPVH---IVDYGCGY----------GYLGLVLMPLLPEGSKYTGID 54
Query: 428 ----------QFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLE 476
+ + + +D C H+ +L +
Sbjct: 55 SGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAIC--HAFLLHMTTPETMLQK 111
Query: 477 LNRVLRPGGFFI 488
+ ++ GG I
Sbjct: 112 MIHSVKKGGKII 123
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPG 451
+LDVG G + G L G + V+ A + P+++ GT L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTH-PSVTFHHGTITDLSDSP 100
Query: 452 IVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWS 490
+ + H+ E L+ L + GG + S
Sbjct: 101 KRWAGLLA--WYSLIHMGPGELPDALVALRMAVEDGGGLLMS 140
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER 446
+ V+ D+G G + L ++G+ + + Q A P + G E
Sbjct: 33 PKGSVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQA--VVHPQVEWFTGYAEN 87
Query: 447 LPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGG--FFIW 489
L P D V H K E+ R++R G +
Sbjct: 88 LALPDKSVDGVISIL--AIHHFSHLEKSFQEMQRIIRDGTIVLLTF 131
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 30/134 (22%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH-----------EAQVQFALERGIP 436
+ VLD+G G G ++F+P + E FA E+G+
Sbjct: 20 RAEHRVLDIGAGA----------GHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 69
Query: 437 AISAVMGT-ERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGF-----FIW 489
+ GT E LPFP FD + C H + K + E+ RVL+ G
Sbjct: 70 NVRFQQGTAESLPFPDDSFDIITCRY--AAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127
Query: 490 SATPVYQKLPEDVE 503
PV + +
Sbjct: 128 PEDPVLDEFVNHLN 141
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 24/120 (20%)
Query: 381 VPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH-------EAQVQFA--- 430
V V L++G G G + + + A ++
Sbjct: 31 ASAVHPKGEEPVFLELGVGT----------GRIALPLIARGYRYIALDADAAMLEVFRQK 80
Query: 431 LERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFI 488
+ + V +P P V + + + K+L E RVL+PGG +
Sbjct: 81 IAGVDRKVQVVQADARAIPLPDESVHGVIVVH--LWHLVPDWPKVLAEAIRVLKPGGALL 138
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 5e-10
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEA 425
+++ G++ VLD+GCG L DRG + + D
Sbjct: 31 GAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRT 85
Query: 426 QVQFALERGIPA---ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLR 482
V A G S E G +D + H + +LL + +L
Sbjct: 86 LVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANF--ALLHQDIIELLSAMRTLLV 143
Query: 483 PGGFFI------WSATPVYQKLPEDVEIWNAMSQLIKAMCW 517
PGG + WS + E + + + M W
Sbjct: 144 PGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPW 184
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 22/141 (15%)
Query: 384 VAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK-------DEHEAQVQFALERGIP 436
+ K VLD+G G G ++ + D + ++ A E+G+
Sbjct: 49 EEYLKNPCRVLDLGGG----------TGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK 98
Query: 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSATPVY 495
+ E LPFP F+AV A V ++E K E+ RVL P G I + Y
Sbjct: 99 NV-VEAKAEDLPFPSGAFEAV-LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
Query: 496 QKLPE--DVEIWNAMSQLIKA 514
L + + + W+ +++ +K
Sbjct: 157 TFLQQMIEKDAWDQITRFLKT 177
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 1e-09
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 22/106 (20%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEH-------EAQVQFALERG-IPAISAVMG- 443
VLDVGCG G T + E +Q ERG P +S + G
Sbjct: 57 VLDVGCGD----------GYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGD 106
Query: 444 TERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488
LPF F+A+ E + L E+ RVL+ G+
Sbjct: 107 LSSLPFENEQFEAIMA--INSLEWTEEPLRALNEIKRVLKSDGYAC 150
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 34/132 (25%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK--------DEH 423
++ + ES K VLD G G + +S + +
Sbjct: 13 RFLKYCNESNL----DKT---VLDCGAGG----------DLPPLSIFVEDGYKTYGIEIS 55
Query: 424 EAQVQFALER----GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLE 476
+ Q++ A + +LPF V+ +H+ + + + E
Sbjct: 56 DLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS--YGTIFHMRKNDVKEAIDE 113
Query: 477 LNRVLRPGGFFI 488
+ RVL+PGG
Sbjct: 114 IKRVLKPGGLAC 125
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 24/107 (22%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPK-------DEHEAQVQFALERGIPAISAVMGT- 444
VL++ G G T + D + A G+ +
Sbjct: 50 VLELASGT----------GYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDL 99
Query: 445 ERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFI 488
+DAV H+ + + PGG
Sbjct: 100 FDWTPDR-QWDAVFF--AHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG---VLTMSFAPKDEHEAQVQFALER 433
++ +P+V G R ++D+GCG F + + G VL + + K + A
Sbjct: 35 LRAMLPEVG-GLR---IVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAA 85
Query: 434 ----GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489
GI A + ++L P FD + + + + + +L +++ L PGG F++
Sbjct: 86 GPDTGITYERADL--DKLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVF 142
Query: 490 SAT-PVYQKLPEDVEIW 505
S P+Y + W
Sbjct: 143 STEHPIY--MAPARPGW 157
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 27/115 (23%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH------------EAQVQFALERGI 435
K VLDV G G + +FAP + A+ F G
Sbjct: 36 KGNEEVLDVATGG----------GHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGH 84
Query: 436 PAISAVMGT-ERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488
+ V G E++PF F V C H + E RVL+ GG +
Sbjct: 85 QQVEYVQGDAEQMPFTDERFHIVTCR--IAAHHFPNPASFVSEAYRVLKKGGQLL 137
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 6e-09
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPG 451
+L+VG G + L + + + A + R P + V E LPFPG
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPFPG 93
Query: 452 IVFDAVHCAR--CRVPWHIEGGKLLLELNRVLRPGGFFI 488
FD V V +E ++LLE RVLRPGG +
Sbjct: 94 ESFDVVLLFTTLEFVE-DVE--RVLLEARRVLRPGGALV 129
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPK--------DEHEAQVQFALERGIPA-----IS 439
+ D+GCG G T+ A D ++ E + A +
Sbjct: 50 IADIGCGT----------GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVK 99
Query: 440 AVMGT-ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488
+ G+ + LPF D + ++I + + E ++ L+ GGF
Sbjct: 100 GITGSMDNLPFQNEELDLIWSEG--AIYNIGFERGMNEWSKYLKKGGFIA 147
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPK--------DEHEAQVQFALERGIPA-----IS 439
+ D+GCG G TM A D + + ++
Sbjct: 50 IADIGCGT----------GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVT 99
Query: 440 AVMGT-ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488
++G+ + LPF D + ++I + L E + L+ GG+
Sbjct: 100 GIVGSMDDLPFRNEELDLIWSEG--AIYNIGFERGLNEWRKYLKKGGYLA 147
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 31/135 (22%)
Query: 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK---- 420
+ +G + F + R VL+ GCG G F P+
Sbjct: 27 RVLSGPDPELTFDLWLSRLLTPQTR---VLEAGCG----------HGPDAARFGPQAARW 73
Query: 421 ---DEHEAQVQFALERGIPAISAVMG--TERLPFP-GIVFDAVHCARCRVPWHIEGGKLL 474
D ++ A P LP G F + R ++
Sbjct: 74 AAYDFSPELLKLARANA-PHADVYEWNGKGELPAGLGAPFGLIVSRR-------GPTSVI 125
Query: 475 LELNRVLRPGGFFIW 489
L L + P F++
Sbjct: 126 LRLPELAAPDAHFLY 140
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLT-----MSFAPKDEHEAQVQFAL 431
+++ +PD K VLD+GCG + + G +S E + A
Sbjct: 36 LKKMLPDFN-QKT---VLDLGCGFGWHCIYAAEHGAKKVLGIDLS-------ERMLTEAK 84
Query: 432 ER-GIPAISAVMG-TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489
+ P + E + ++ V + + + + ++ L+ G FI+
Sbjct: 85 RKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIF 143
Query: 490 S 490
S
Sbjct: 144 S 144
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 393 VLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPF 449
+LD GCG GG+L +G VL D + +A + P V+G
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDF-PEARWVVGDLSVDQI 103
Query: 450 PGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFI 488
FD + + V + L ++R L G +
Sbjct: 104 SETDFDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 393 VLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451
+++G G F L + GV + E + A +RG+ + E LP
Sbjct: 51 GVEIGVGTGRFAVPLKIKIGV--------EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 452 IVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488
FD ++ + L E R+L+ GG+ I
Sbjct: 101 ESFDFALMVT--TICFVDDPERALKEAYRILKKGGYLI 136
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 24/112 (21%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK-------DEHEAQVQFALERGIPAISA 440
K VL+ G G G LT + A E+ S
Sbjct: 44 KSFGNVLEFGVGT----------GNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSI 93
Query: 441 VMGT-ERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFI 488
G P D + H+ E + + +++L GG +
Sbjct: 94 TEGDFLSFEVPT-SIDTIVSTY--AFHHLTDDEKNVAIAKYSQLLNKGGKIV 142
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEAQVQFALE 432
DF+ + GK +L + G FL G V + + +A+ Q A E
Sbjct: 19 DFLVSVANQIPQGK----ILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQE 73
Query: 433 RGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488
+G+ + ++ + C +P + +L ++ + L+PGG FI
Sbjct: 74 KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQ-QLYPKVYQGLKPGGVFI 128
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPG 451
+L++GCG + G + D A R G P + + +L
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLF--HQLDAID 101
Query: 452 IVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWS 490
+DAV H+ E +L + R L+PGG F S
Sbjct: 102 A-YDAVWA--HACLLHVPRDELADVLKLIWRALKPGGLFYAS 140
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 387 GKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK--------DEHEAQVQFALERGIPA- 437
G +D+G G G L+++ A + D + + AL+ A
Sbjct: 41 GITAGTCIDIGSGP----------GALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN 90
Query: 438 ----ISAVMGT-ERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSA 491
I V G +P D + R + E E+ R+L+ GG
Sbjct: 91 LNDRIQIVQGDVHNIPIEDNYADLIVS-RG-SVFFWEDVATAFREIYRILKSGGKTYIGG 148
Query: 492 TPVYQKLPEDV 502
++L + +
Sbjct: 149 GFGNKELRDSI 159
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 393 VLDVGCGVASFGGFLF----DRGV----LTMSFAPKDEHEAQVQFALERGIPA-----IS 439
VLDVGCG+ G R V +++S QV A R A ++
Sbjct: 65 VLDVGCGI---GKPAVRLATARDVRVTGISIS-------RPQVNQANARATAAGLANRVT 114
Query: 440 AVMG-TERLPFPGIVFDAVHC--ARCRVPWHIEGGKLLLELNRVLRPGGFFI---WSAT- 492
LPF FDAV + +P + G+ L E+ RVLRPGG +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHHMP---DRGRALREMARVLRPGGTVAIADFVLLA 171
Query: 493 PVYQKLPEDVEIW 505
PV E V+ +
Sbjct: 172 PVEGAKKEAVDAF 184
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 9e-07
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 32/146 (21%)
Query: 393 VLDVGCGVASFGGFLF----DRGV----LTMSFAPKDEHEAQVQFALER--GIPAISAVM 442
VLD+G G+ GG G + + V A ER G I
Sbjct: 59 VLDIGSGL---GGGCMYINEKYGAHTHGIDIC-------SNIVNMANERVSGNNKIIFEA 108
Query: 443 GT-ERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI---WSATPVYQK 497
FP FD ++ + +E KL + + L+P G + + AT
Sbjct: 109 NDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW 168
Query: 498 LPEDVEIWNAMSQLIKAMCWELVSIS 523
E + +K + L+++
Sbjct: 169 DDE-------FKEYVKQRKYTLITVE 187
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK-------DEHEAQVQFALERGIPAISA 440
+ V++D GCG G D + ++ E+ ++
Sbjct: 16 GKKGVIVDYGCGN----------GFYCKYLLEFATKLYCIDINVIALKEVKEK-FDSVIT 64
Query: 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488
+ + P D + A ++ ++ E+ R+L+ G I
Sbjct: 65 LS--DPKEIPDNSVDFILFAN--SFHDMDDKQHVISEVKRILKDDGRVI 109
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 36/149 (24%)
Query: 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF----DRGV----LTMSFAPKDEHEA 425
+F+ + + ++D GCG GG + G +T+S A
Sbjct: 105 AEFLMDHLGQAGPDDT---LVDAGCGR---GGSMVMAHRRFGSRVEGVTLS-------AA 151
Query: 426 QVQFALER----GIPA-ISAVMGTER-LPFPGIVFDAVHC--ARCRVPWHIEGGKLLLEL 477
Q F R I + + + PF A + V H L E
Sbjct: 152 QADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLH----DLFSEH 207
Query: 478 NRVLRPGGFFI---WSATPVYQKLPEDVE 503
+R L+ GG ++ P Y + + V
Sbjct: 208 SRFLKVGGRYVTITGCWNPRYGQPSKWVS 236
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 29/151 (19%)
Query: 356 YLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF----DRG 411
P + + +L +++ + +R LD+G G GG G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGY---GGAARFLVRKFG 105
Query: 412 V----LTMSFAPKDEHEAQVQFALERGIPA-----ISAVMG-TERLPFPGIVFDAV--HC 459
V L ++ Q + E A I+ G +P +D +
Sbjct: 106 VSIDCLNIA-------PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158
Query: 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490
A P + K+ E RVL+P G +
Sbjct: 159 AFLHSP---DKLKVFQECARVLKPRGVMAIT 186
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 391 RVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450
VLD+GCG + D +F D + ++ A +R V + RLPF
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505
DA+ P E EL RV++PGG+ I ATP + L E +
Sbjct: 146 DTSMDAIIR--IYAPCKAE------ELARVVKPGGWVIT-ATPGPRHLMELKGLI 191
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 20/135 (14%)
Query: 366 FKNGALHYIDFIQESVPD--VAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH 423
++ + HY + + ++ K VLD+GC + G + + G +
Sbjct: 10 YEEKSGHYYNAVNPNLLKHIKKEWKE---VLDIGCSSGALGAAIKENGTRVSGI---EAF 63
Query: 424 EAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELN 478
+ A E+ + + T +P+ FD V + + ++ ++
Sbjct: 64 PEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVK 117
Query: 479 RVLRPGGFFIWSATP 493
++ G + S P
Sbjct: 118 PYIKQNGVILAS-IP 131
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 88/229 (38%)
Query: 592 PARLEKTPY--WLLSSQVGVYGKSAPEDFT-----ADYEHW-----------KRVVSKSY 633
+ T W L S+ + + F +Y+ + ++++ Y
Sbjct: 58 KDAVSGTLRLFWTLLSK----QEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMY 112
Query: 634 LNGMGINWSTV-----RNV-------------MDMRS-----VYG--GF------AAAMK 662
+ ++ NV +++R + G G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 663 DISV---------WVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHA-- 711
V W +N+ + +SP+T+ + ++ L+ I +W +H+
Sbjct: 173 SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 712 ----DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESM 756
L SK + C L+V +V+ +
Sbjct: 232 AELRRLLKSKPYENC------------------LLVLLNVQNAKAWNAF 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 100/721 (13%), Positives = 198/721 (27%), Gaps = 232/721 (32%)
Query: 116 FDDGSNRQTQND------DNKTGDRDSKTDSEGGETNTDESEKKSYSDENGNKSDSDDGE 169
F+ G ++ D D + D K + + K S E + D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--------DVQDMPKSILSKE-----EIDHII 55
Query: 170 KKSDRKSE--------ESSGEK-VDGQVEEKEDQN----------ENKESEKSSDDKKED 210
D S S E+ V VEE N E ++ + E
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 211 GSKNQSSNELFPSG-------------AQLELTNETTT----QKGSF-STQATESKNEKE 252
+ + N++F A LEL GS + A + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 253 AQQSSNQQNGYNWKLCNVTAGADFIP--CLDNLQAIKKLRSTKHYEHRERHCPEEPPTCL 310
Q + W + P L+ LQ + + ++ R H
Sbjct: 176 VQCKMD--FKIFW----LNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDH--------- 219
Query: 311 VPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNGA 370
K I + + +L K K ++N
Sbjct: 220 ---SSNIKLRIHSIQAELR---------RLLKSKPYEN---------------------C 246
Query: 371 LHYIDFIQESVPDVAWGKRTRVVLDVGC---------GVASFGGFLFDRGVLTMSFAPK- 420
L + +V + ++ C V F +++
Sbjct: 247 LLVLL-------NV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAA-TTTHISLDHHSMT 297
Query: 421 -DEHEAQVQFALERGIPAISAVMGTERLP------FP---GIVFDAVHCARCRVPW---- 466
E + + LP P I+ +++ W
Sbjct: 298 LTPDEVKSLLLKYLDCRP-------QDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWK 348
Query: 467 HIEGGKL--LLELN-RVLRPGGFFIWSATPVYQKL---PEDVEIWNAMSQLIKAMCWELV 520
H+ KL ++E + VL P + ++ +L P I + L+ ++ W
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPPSAHI---PTILL-SLIWF-D 398
Query: 521 SISKDTINKVGIAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPL----------- 569
I D + V N+ K S + + +P
Sbjct: 399 VIKSDVMVVV----------NKL-HKYS------LVEKQPKESTISIPSIYLELKVKLEN 441
Query: 570 QACMHK--VPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKR 627
+ +H+ V ++ + + P L++ Y+ S +G + K ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFY--SHIGHHLK------NIEHPERMT 491
Query: 628 VVSKSYLNGMGINW--STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYE 685
+ +L+ + +R+ + G ++ + + I + P YE
Sbjct: 492 LFRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPK-----YE 542
Query: 686 RGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLV--AVVAEVDRILRPEGKLIV 743
R + I F +L+ + + +L+ A++AE + I K +
Sbjct: 543 RLVNAILD-----FLPKIEE-NLICSKY--------TDLLRIALMAEDEAIFEEAHKQVQ 588
Query: 744 R 744
R
Sbjct: 589 R 589
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 33/126 (26%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQV--------------QFALER 433
K VLDVG G G + + +V + +
Sbjct: 36 KEGMTVLDVGTGA----------GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
Query: 434 GIPAISAVMGT-ERLPFPGIVFDAVHCARC--RVPWHIEGGKLLLELNRVLRPGGFFI-- 488
G+ + + ++P P D + A + K L EL RV +P +
Sbjct: 86 GLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELS-EPL--KFLEELKRVAKPFAYLAII 142
Query: 489 -WSATP 493
W
Sbjct: 143 DWKKEE 148
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 393 VLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPF 449
LD+GCG +L G V + + + + + L F
Sbjct: 36 TLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVE-RIKSIENLDNLHTRVVDLNNLTF 94
Query: 450 PGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSA 491
+D + + + L+ + R +PGG+ + A
Sbjct: 95 DR-QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-06
Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 37/127 (29%)
Query: 385 AWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQV--------------QFA 430
+ + +LD+GCG G +++ A V A
Sbjct: 26 NYLQEDDEILDIGCGS----------GKISLELA---SKGYSVTGIDINSEAIRLAETAA 72
Query: 431 LERGI-----PAISAVMGT-ERLPFPGIVFDAVHCA---RCRVPWHIEGGKLLLELNRVL 481
G+ + L F FD VP E +++ E+ RVL
Sbjct: 73 RSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVL 131
Query: 482 RPGGFFI 488
+PG +
Sbjct: 132 KPGAYLY 138
|
| >4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae} Length = 956 | Back alignment and structure |
|---|
Score = 47.4 bits (111), Expect = 2e-05
Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 5/229 (2%)
Query: 38 MTSSSSSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDNNADLPEDATKGGKNE 97
M SS ++ N+ + +++ + + NQ + + ED +
Sbjct: 609 MKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRT 668
Query: 98 KIQENIEKSDE-KSNEESKFDDGSNRQTQNDDNKTGDRDSKTDSEG----GETNTDESEK 152
K + I S++ES +D + + + + G D + + +E
Sbjct: 669 KRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINEL 728
Query: 153 KSYSDENGNKSDSDDGEKKSDRKSEESSGEKVDGQVEEKEDQNENKESEKSSDDKKEDGS 212
+ + D E K + ++ EKV +E+K + K S
Sbjct: 729 INSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEE 788
Query: 213 KNQSSNELFPSGAQLELTNETTTQKGSFSTQATESKNEKEAQQSSNQQN 261
N + P + T + + + + Q +
Sbjct: 789 HNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSY 837
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 369 GALHYIDFIQESVPDVAW--GKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQ 426
+H +D I+ S +A G T LD G G+ L + T + +
Sbjct: 72 DHVHDVD-IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL--EPVKHM 128
Query: 427 VQFALER--GIPAIS-AVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRV 480
++ A G+P + E P +D + ++ + K +
Sbjct: 129 LEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT--AIYLTDADFVKFFKHCQQA 186
Query: 481 LRPGGFFIW----SATPVYQKLPEDVEIWNAMSQLIKAM 515
L P G+ + S + ED + + +
Sbjct: 187 LTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF 225
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 44/159 (27%)
Query: 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK----------DEH 423
I E ++++DVGCG G T+ A + D
Sbjct: 26 YKMIDEYHD-----GERKLLVDVGCGP----------GTATLQMAQELKPFEQIIGSDLS 70
Query: 424 EAQVQFALER------GIPAISAVMGT-ERLPFPGIV------FDAVHCARCRVPWH-IE 469
++ A +S + + + F G D + C H +
Sbjct: 71 ATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVEC---AHWFD 127
Query: 470 GGKLLLELNRVLRPGGFF-IWS-ATPVYQKLPEDVEIWN 506
K LR G IW A P++ PE ++
Sbjct: 128 FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMI 166
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 22/126 (17%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEH-------EAQVQFALERGIPAISA 440
+ +LD+GCG G LT A ++ A + P +
Sbjct: 56 QPGEFILDLGCG----------TGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-PHLHF 104
Query: 441 VMG-TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLP 499
+ DAV + W E + +++ L+ GG F+ +
Sbjct: 105 DVADARNFRVDK-PLDAVFSNAM-LHWVKEPEAAIASIHQALKSGGRFVAE-FGGKGNIK 161
Query: 500 EDVEIW 505
+E
Sbjct: 162 YILEAL 167
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452
VLD+GCG F + G+ ++ D +E ++F E + + P
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFC-EGKFNVVKSDAIEYLKSLPDK 100
Query: 453 VFDAVHCARCRVPWHI-------EGGKLLLELNRVLRPGGFFI 488
D V H +LL ++ + +
Sbjct: 101 YLDGVMI------SHFVEHLDPERLFELLSLCYSKMKYSSYIV 137
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQV--------------QFALERGIPA 437
VV V CG ++ Q+ + A +
Sbjct: 121 VVASVPCGW----------MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
Query: 438 -ISAVMGT-ERLPFPGIVFDAVHCARCR--VPWHIEGGKLLLELNRVLRPGGFFIWSATP 493
I+ +L +D + P +L + L+PGG + S
Sbjct: 171 QITLHRQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT 229
Query: 494 VYQKLPED 501
L D
Sbjct: 230 PPPALSPD 237
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 27/143 (18%), Positives = 40/143 (27%), Gaps = 28/143 (19%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447
+ VV D GCG + + V A D ++
Sbjct: 66 PASLVVADFGCGDCRLASSIRNP-VHCFDLASLDPRVTVCDM---------------AQV 109
Query: 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNA 507
P D C L E NRVL+PGG + E +
Sbjct: 110 PLEDESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLKVA---------EVSSRFED 158
Query: 508 MSQLIKAMCWE-LVSISKDTINK 529
+ ++A+ +SKD N
Sbjct: 159 VRTFLRAVTKLGFKIVSKDLTNS 181
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 1e-04
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 13/40 (32%)
Query: 284 QAIKKLRST-KHYEHRERHCPEEPPTCLVPLPEGYKRSIE 322
QA+KKL+++ K Y + P + K ++E
Sbjct: 20 QALKKLQASLKLYA------DDSAPALAI------KATME 47
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 10/121 (8%)
Query: 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG---VLTMSFAPKDEHEAQVQFAL 431
F+Q + + T LD G G+ L V + +A+
Sbjct: 65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG- 123
Query: 432 ERGIPAIS-AVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFF 487
E G + G + +D + H+ + L LRP G
Sbjct: 124 EEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV--IGHLTDQHLAEFLRRCKGSLRPNGII 181
Query: 488 I 488
+
Sbjct: 182 V 182
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 22/134 (16%)
Query: 387 GKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPK---------DEHEAQVQFALERGIPA 437
+R D+GCG G T + D + ++ A +R
Sbjct: 31 LERVLNGYDLGCG----------PGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNT 80
Query: 438 ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK 497
D ++ W + +L +L L GG P +
Sbjct: 81 NFGKADLATWKPAQ-KADLLYANAV-FQWVPDHLAVLSQLMDQLESGGVLAVQ-MPDNLQ 137
Query: 498 LPEDVEIWNAMSQL 511
P + +
Sbjct: 138 EPTHIAMHETADGG 151
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 22/136 (16%)
Query: 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG--VL------TM-SFAPK 420
Y ++ + + VLDV CG L + G V M +A K
Sbjct: 42 TAEYKAWLLGLLRQHGCHR----VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALK 97
Query: 421 DEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGG--------K 472
+ + + A ++ + + + ++ G FDAV C H+
Sbjct: 98 ERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL-GNSFAHLPDSKGDQSEHRL 156
Query: 473 LLLELNRVLRPGGFFI 488
L + ++RPGG +
Sbjct: 157 ALKNIASMVRPGGLLV 172
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 25/146 (17%), Positives = 42/146 (28%), Gaps = 44/146 (30%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPK----------DEHEAQVQFALERGIPA----- 437
VLD+GCG G + D + Q++ A +
Sbjct: 87 VLDLGCGT----------GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 438 --------------ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483
I + E P D V C L E++RVLR
Sbjct: 137 GSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRD 195
Query: 484 GG----FFIWSATPVYQKLPEDVEIW 505
GG +++ + + +D ++
Sbjct: 196 GGELYFSDVYADRRLSEAAQQDPILY 221
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 17/188 (9%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFAL 431
IDF++E + A + R VLD+ CG L +RG + D HE ++ A
Sbjct: 25 AEIDFVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVAR 80
Query: 432 ERGIPAISAV------MGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLR 482
+ + + + F FDAV + + KL ++ L+
Sbjct: 81 RKAKERNLKIEFLQGDV--LEIAFKN-EFDAVTMF-FSTIMYFDEEDLRKLFSKVAEALK 136
Query: 483 PGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNE 542
PGG FI + + +WN K + + + + + N
Sbjct: 137 PGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNG 196
Query: 543 CYEKRSQQ 550
+
Sbjct: 197 EVKAFLVD 204
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 796 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.58 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.53 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.53 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.52 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.5 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.5 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.47 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.47 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.46 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.45 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.45 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.45 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.44 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.44 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.44 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.44 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.43 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.43 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.43 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.42 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.42 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.42 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.42 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.41 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.41 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.41 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.4 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.4 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.4 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.39 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.38 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.38 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.37 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.37 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.37 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.36 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.36 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.36 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.36 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.36 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.36 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.35 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.34 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.34 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.34 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.33 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.33 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.32 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.32 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.32 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.31 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.31 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.3 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.3 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.3 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.29 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.29 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.28 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.28 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.27 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.27 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.26 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.25 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.25 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.24 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.24 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.24 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.24 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.24 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.23 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.22 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.22 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.22 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.22 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.21 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.21 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.2 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.2 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.19 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.18 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.18 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.17 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.17 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.16 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.16 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.16 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.15 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.15 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.14 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.14 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.14 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.13 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.13 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.13 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.12 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.12 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.12 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.11 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.11 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.11 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.11 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.11 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.1 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.09 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.09 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.09 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.09 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.09 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.09 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.08 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.08 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.08 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.07 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.07 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.06 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.06 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.06 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.06 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.06 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.05 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.05 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.05 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.05 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.05 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.05 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.04 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.04 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.04 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.04 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.03 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.02 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.02 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.02 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.02 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.01 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.0 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.99 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.99 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.98 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.98 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.97 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.97 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.97 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.96 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.96 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.95 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.94 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.94 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.94 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.93 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.93 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.92 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.92 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.92 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.92 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.91 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.91 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.91 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.91 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.91 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.89 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.88 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.88 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.88 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.88 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.88 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.87 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.87 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.86 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.86 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.86 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.85 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.85 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.84 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.83 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.82 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.81 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.81 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.81 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.81 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.8 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.8 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.79 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.78 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.78 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.77 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.77 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.76 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.76 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.76 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.74 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.73 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.71 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.71 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.7 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.7 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.69 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.68 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.68 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.67 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.67 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.67 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.66 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.63 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.63 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.61 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.6 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.58 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.56 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.55 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.54 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.51 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.49 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.47 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.47 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.43 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.43 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.4 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.37 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.36 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.29 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.26 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.26 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.25 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.25 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.24 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.22 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.2 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.16 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.14 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.13 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.09 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.07 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.06 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.05 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.05 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.04 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.03 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.03 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.02 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.01 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.01 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.0 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.99 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.99 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.98 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.98 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.93 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.93 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 97.91 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.9 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.9 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.9 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.89 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.89 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.89 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.87 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.87 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.87 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.87 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.87 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.86 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.85 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.85 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.85 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.84 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.84 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.82 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 97.82 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.81 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.81 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.81 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.77 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.76 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.76 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.75 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.75 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.73 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.72 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.71 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.71 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.71 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.71 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.7 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.7 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.68 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.67 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.65 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.65 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.64 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.62 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.62 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.59 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.58 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.58 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.57 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.57 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.56 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.56 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.56 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.56 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.56 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.55 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.54 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.53 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.53 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.53 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.52 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.52 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.52 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.52 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.52 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.52 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.51 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.51 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.51 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.5 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.48 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.48 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.48 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.48 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.48 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.48 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.46 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.46 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.46 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.46 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.45 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.45 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.43 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.41 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.41 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.4 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.37 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.36 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.35 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.33 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.33 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.33 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.33 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.31 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.31 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.31 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.29 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.28 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.28 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.27 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.27 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.27 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 97.24 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.23 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.23 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.21 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.21 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.17 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.13 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.12 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.12 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.11 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.11 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.1 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.07 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.06 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.05 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.03 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.01 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.0 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.98 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.97 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.97 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 96.96 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 96.96 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.93 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 96.93 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 96.91 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.91 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.89 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.88 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.85 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 96.81 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.78 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.77 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.74 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 96.73 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 96.73 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 96.71 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.71 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 96.68 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.68 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.67 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.66 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 96.66 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.61 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.6 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.57 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 96.57 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 96.56 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.55 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.54 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 96.53 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 96.53 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.52 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.51 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 96.5 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.46 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.45 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 96.44 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 96.44 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 96.44 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 96.43 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 96.42 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 96.38 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 96.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.25 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.22 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.22 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.19 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.19 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.16 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.15 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 96.12 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.08 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 96.06 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.05 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.02 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 95.99 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 95.99 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 95.96 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 95.96 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 95.96 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 95.94 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 95.9 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 95.84 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 95.83 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 95.76 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 95.74 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 95.73 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 95.71 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 95.6 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=156.77 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=93.2
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.|.+..+ ...+|||||||+|.++..|+.+ +|+|+|+++.|+..|+ +...+.+.+++++.+|+
T Consensus 28 ~l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~ 95 (257)
T 4hg2_A 28 ALFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL 95 (257)
T ss_dssp HHHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC
T ss_pred HHHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc
Confidence 34555665554 2579999999999999999986 8999999998875543 23456788889999999
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
++++||+|+|..+ +||. ++..+|.+++|+|||||+|++.........+++....
T Consensus 96 ~~~sfD~v~~~~~-~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~ 149 (257)
T 4hg2_A 96 PPASVDVAIAAQA-MHWF-DLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVV 149 (257)
T ss_dssp CSSCEEEEEECSC-CTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHH
T ss_pred cCCcccEEEEeee-hhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHH
Confidence 9999999999875 6765 7889999999999999999876443333344444433
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=152.80 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=91.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPG 451 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd 451 (796)
..+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++ +.+...+++ +.+.+.+...+|+++
T Consensus 27 ~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 27 AKLMQIAAL----KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHTC----CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHhCC----CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEEecHHhCCCCC
Confidence 344444442 35789999999999999999876 8999999999998887 444455544 677888889999999
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++||+|+|+.+ ++|..++..+|.++.|+|||||+|++...
T Consensus 102 ~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 102 ERFHIVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEhhh-hHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999875 77777999999999999999999998744
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=149.15 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=113.8
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~ 439 (796)
.+........+.+.+.++. .++.+|||||||+|.++..|+++ .|+++|+++.++..++ +.+...++. +.+
T Consensus 41 ~~~~~~~~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~~ 115 (273)
T 3bus_A 41 SVDDATDRLTDEMIALLDV----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQAN-ARATAAGLANRVTF 115 (273)
T ss_dssp CHHHHHHHHHHHHHHHSCC----CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHhcCCCcceEE
Confidence 4444455566667776653 45789999999999999999863 8999999999988887 344445543 677
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHH-HHHHHHHHHHHHhhcce
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPED-VEIWNAMSQLIKAMCWE 518 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El-~~~~~~le~l~~~~~W~ 518 (796)
...+...+|+++++||+|++..+ +++..++..+|.++.|+|||||+|++............ ...+..+..........
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALES-LHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLG 194 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESC-TTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCC
T ss_pred EECccccCCCCCCCccEEEEech-hhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCC
Confidence 88888899999999999999874 66666889999999999999999998854333222221 11222221111112222
Q ss_pred eehhhhhhccceeEEEEE
Q 003776 519 LVSISKDTINKVGIAVYR 536 (796)
Q Consensus 519 ~v~~~~~~l~dvG~~L~r 536 (796)
........+...||.+.+
T Consensus 195 ~~~~~~~~l~~aGf~~~~ 212 (273)
T 3bus_A 195 GIDEYESDVRQAELVVTS 212 (273)
T ss_dssp CHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCeEEE
Confidence 334444456666766654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=148.75 Aligned_cols=127 Identities=16% Similarity=0.241 Sum_probs=97.5
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~ 439 (796)
.+........+.+.+.++......++.+|||||||+|.++..|+++ .|+++|+++.++..++.. +...++ .+.+
T Consensus 58 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~ 136 (297)
T 2o57_A 58 EIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITV 136 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEE
T ss_pred chHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEE
Confidence 3444445555666666620001235789999999999999999874 799999999999888744 344454 3677
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
...+...+|+++++||+|++..+ +++..++..+|.++.|+|||||+|++..+.
T Consensus 137 ~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 137 KYGSFLEIPCEDNSYDFIWSQDA-FLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp EECCTTSCSSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCcccCCCCCCCEeEEEecch-hhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 88888999999999999999874 555568899999999999999999988543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=141.30 Aligned_cols=105 Identities=22% Similarity=0.272 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++... ...++ .+.+...+...+|+++++||+|++..+ +
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-l 97 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA-QEKGVENVRFQQGTAESLPFPDDSFDIITCRYA-A 97 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC-G
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEecccccCCCCCCcEEEEEECCc-h
Confidence 45789999999999999999875 7999999999998887444 44454 367778888899999999999999874 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
++..++..+|.++.|+|||||+|++.....
T Consensus 98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 555689999999999999999999875443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-15 Score=160.15 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc-------CCCeEEEEcCCCCCC----CC--CC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER-------GIPAISAVMGTERLP----FP--GI 452 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er-------gl~~~~~v~d~e~LP----fp--d~ 452 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++....... ...+.+.+.|...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 4679999999999999988864 79999999999988876554331 124567788887775 64 45
Q ss_pred ceeEEEEcCCCcccc-c---chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPWH-I---EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w~-~---d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|+|+.+ +||. . ++..+|.++.|+|||||+|+++.+
T Consensus 114 ~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999885 8887 3 457999999999999999998843
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=140.78 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=110.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
......+.+.+..+ .++.+|||||||+|.++..|+++ .|+++|+++.++..++ +.+...++. +.+...+..
T Consensus 31 ~~~~~~~l~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 31 PEATRKAVSFINEL---TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN-ENAVKANCADRVKGITGSMD 106 (257)
T ss_dssp HHHHHHHHTTSCCC---CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHHhcC---CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChh
Confidence 44455566666432 35679999999999999999875 7999999999998887 445556654 678888899
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC--CCCCchHHHHHHHHHHHHHHhhcceeehhh
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP--VYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~--~~~~l~El~~~~~~le~l~~~~~W~~v~~~ 523 (796)
.+|+++++||+|++..+ ++ |.++..+|.++.|+|||||+|++..+. ...........|... ...+......
T Consensus 107 ~~~~~~~~fD~v~~~~~-l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 179 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGA-IY-NIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA-----YPEISVIPTC 179 (257)
T ss_dssp SCSSCTTCEEEEEEESC-SC-CCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHH-----CTTCCBHHHH
T ss_pred hCCCCCCCEEEEEecCh-Hh-hcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHh-----CCCCCCHHHH
Confidence 99999999999999874 44 448999999999999999999988532 222333333444321 1112234444
Q ss_pred hhhccceeEEEEE
Q 003776 524 KDTINKVGIAVYR 536 (796)
Q Consensus 524 ~~~l~dvG~~L~r 536 (796)
...+...||.+..
T Consensus 180 ~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 180 IDKMERAGYTPTA 192 (257)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHHCCCeEEE
Confidence 4566677777665
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=139.90 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
......+...++. ..++.+|||||||+|.++..|++. .|+++|+++.++..++ +.+...++. +.+...+..
T Consensus 31 ~~~~~~~l~~l~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~ 106 (267)
T 3kkz_A 31 PEVTLKALSFIDN---LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMD 106 (267)
T ss_dssp HHHHHHHHTTCCC---CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHhccc---CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHH-HHHHHcCCCcCcEEEEcChh
Confidence 3444555566552 245789999999999999999875 7999999999998887 444555654 778888999
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCC--CCCchHHHHHHHHHHHHHHhhcceeehhh
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV--YQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~--~~~l~El~~~~~~le~l~~~~~W~~v~~~ 523 (796)
.+|+++++||+|+|..+ ++ |.++..+|.++.|+|||||+|++..... ..........|.. ...........
T Consensus 107 ~~~~~~~~fD~i~~~~~-~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 179 (267)
T 3kkz_A 107 DLPFRNEELDLIWSEGA-IY-NIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD-----AYPEIDTIPNQ 179 (267)
T ss_dssp SCCCCTTCEEEEEESSC-GG-GTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH-----HCTTCEEHHHH
T ss_pred hCCCCCCCEEEEEEcCC-ce-ecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH-----hCCCCCCHHHH
Confidence 99999999999999874 44 4489999999999999999999875421 2233333333421 11123344455
Q ss_pred hhhccceeEEEEE
Q 003776 524 KDTINKVGIAVYR 536 (796)
Q Consensus 524 ~~~l~dvG~~L~r 536 (796)
...+...||.+..
T Consensus 180 ~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 180 VAKIHKAGYLPVA 192 (267)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHHCCCEEEE
Confidence 5566777877765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=144.08 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcC--CCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~erg--l~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
+++.+|||||||+|.++..|+++ .|+|+|+|+.|+..|+.+.. ..+ .++.+..++...+|++ .||+|++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~-~~~~~~~v~~~~~D~~~~~~~--~~d~v~~ 145 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAIE--NASMVVL 145 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHH-TSCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHH-hhccCceEEEeeccccccccc--cccccee
Confidence 46889999999999999999864 69999999999999884443 333 3467788888888875 5999999
Q ss_pred cCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 460 ARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 460 s~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+.+ +++.. +...+|++++|+|||||+|+++....
T Consensus 146 ~~~-l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 146 NFT-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp ESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eee-eeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 874 66554 33578999999999999999985433
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=141.25 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT 444 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~ 444 (796)
....++.+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++ +.+...++. +.+...+.
T Consensus 21 ~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 21 TEEKYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp CHHHHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEECCh
Confidence 34556666666653 45789999999999999988864 7999999999998887 444555653 77888888
Q ss_pred CCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+|+ +++||+|+|..+ +++..++..+|.++.|+|||||+|++..+
T Consensus 96 ~~~~~-~~~fD~V~~~~~-~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC-SSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCC-hHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 88888 789999999764 55555889999999999999999998753
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=145.35 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=103.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||||||+|.++..|+++ .|+++|+++.++..++ +.+...++. +.+...+...+|+++++||+|++..+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGN-RRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 45789999999999999999864 8999999999998887 445556654 77888899999999999999999874
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhccceeEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
++ |.++..+|.++.|+|||||+|++...............+..+..... ..+.....+...+...||.+..
T Consensus 195 -l~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~~aGf~~~~ 265 (312)
T 3vc1_A 195 -TM-YVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE-CNIHSRREYLRAMADNRLVPHT 265 (312)
T ss_dssp -GG-GSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHT-CCCCBHHHHHHHHHTTTEEEEE
T ss_pred -hh-hCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhc-CCCCCHHHHHHHHHHCCCEEEE
Confidence 44 44799999999999999999998753332221111122222222111 1233344555566777877655
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=137.38 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=98.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++.... ..+.+...+...+|++ ++||+|++..+ +++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~-l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTIVSTYA-FHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEEEEESC-GGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEEEECcc-hhc
Confidence 4789999999999999999875 79999999988776653322 2456778888889988 99999999874 665
Q ss_pred ccchHH--HHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHH--------HHHHHhhcceeehhhhhhccceeEEEEE
Q 003776 467 HIEGGK--LLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAM--------SQLIKAMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 467 ~~d~~~--~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~l--------e~l~~~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
..++.. +|.++.|+|||||+|++..+ ..............+ ........+.........+...||.+..
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADT-IFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEE-CBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEec-cccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 556655 99999999999999999853 233222222221111 1111112333445555667778887766
Q ss_pred ec
Q 003776 537 KP 538 (796)
Q Consensus 537 kg 538 (796)
..
T Consensus 198 ~~ 199 (220)
T 3hnr_A 198 TR 199 (220)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=142.30 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.......+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++..... . ..+.+...+...
T Consensus 40 ~~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~ 113 (266)
T 3ujc_A 40 GLEATKKILSDIEL----NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-N-NKIIFEANDILT 113 (266)
T ss_dssp HHHHHHHHTTTCCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-C-TTEEEEECCTTT
T ss_pred hHHHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-C-CCeEEEECcccc
Confidence 33444555555432 45789999999999999999874 799999999887666522211 1 456778888888
Q ss_pred CCCCCCceeEEEEcCCCcccc--cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~--~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++++||+|++..+ +++. .++..+|.++.|+|||||+|++..+
T Consensus 114 ~~~~~~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 114 KEFPENNFDLIYSRDA-ILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CCCCTTCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCcEEEEeHHHH-HHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999999874 5555 5789999999999999999998854
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=134.72 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred CEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 391 RVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.+|||||||+|.++..|+++ .|+++|+++.++..++.. +...++ .+.+...+...+|+++++||+|+++.+ ++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-l~ 122 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN-IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS-VF 122 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC-GG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHhccccCceEEEEcCHHHCCCCcccccEEEECch-Hh
Confidence 39999999999999999874 899999999999888744 444454 467888888999999999999999874 66
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+..++..+|.++.|+|||||+|++.....
T Consensus 123 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 123 FWEDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 66788999999999999999999985443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=139.51 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+|+|+++.++..++..... .+.+...+...+ +++++||+|++..+ +++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~-~~~~~fD~v~~~~~-l~~ 115 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA-QLPRRYDNIVLTHV-LEH 115 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC-CCSSCEEEEEEESC-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc-CcCCcccEEEEhhH-HHh
Confidence 3668999999999999999876 899999999888776533211 566777777777 56789999999874 665
Q ss_pred ccchHHHHHHHH-hhcCCCcEEEEEeC
Q 003776 467 HIEGGKLLLELN-RVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~~d~~~~L~Ei~-RVLKPGG~fv~s~~ 492 (796)
..++..+|+++. |+|||||+|+++.+
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 568999999999 99999999999853
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=140.43 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ...+.+.+.+...+|+ +++||+|++..+ ++|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-~~~fD~v~~~~~-l~~ 129 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQN-----YPHLHFDVADARNFRV-DKPLDAVFSNAM-LHW 129 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----CTTSCEEECCTTTCCC-SSCEEEEEEESC-GGG
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhh-----CCCCEEEECChhhCCc-CCCcCEEEEcch-hhh
Confidence 5789999999999999999864 899999999888766532 2345678888888988 579999999874 777
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
..++..+|.++.|+|||||+|++.. +....+......+
T Consensus 130 ~~d~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~ 167 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKSGGRFVAEF-GGKGNIKYILEAL 167 (279)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEE-ECTTTTHHHHHHH
T ss_pred CcCHHHHHHHHHHhcCCCcEEEEEe-cCCcchHHHHHHH
Confidence 7799999999999999999999874 3344444444443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=138.50 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=86.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++ .+.+...+...+|+++++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN-TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45789999999999999998764 799999999999888744 444555 467777888889999999999999874
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++..++..+|.++.|+|||||+|++..
T Consensus 115 -l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 -LEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 6666688999999999999999999875
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=141.16 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=98.4
Q ss_pred cccccccCcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHH
Q 003776 347 QNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEH 423 (796)
Q Consensus 347 qnW~~~~g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~ 423 (796)
..|......+..+.++...+......+...+.+.++. .++.+|||||||+|.++..|+.+ .|+++|+++.++.
T Consensus 55 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~ 130 (254)
T 1xtp_A 55 EYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPG----HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE 130 (254)
T ss_dssp HHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTT----CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHH
T ss_pred hHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcc----cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHH
Confidence 3454444433333333333344444555556665542 35789999999999999988764 5999999999887
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc--cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 424 EAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 424 ~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~--~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++..... . ..+.+...+...+|+++++||+|++..+ +++. .++..+|.++.|+|||||+|++..+
T Consensus 131 ~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 131 EAKRELAG-M-PVGKFILASMETATLPPNTYDLIVIQWT-AIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHHHTTT-S-SEEEEEESCGGGCCCCSSCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhcc-C-CceEEEEccHHHCCCCCCCeEEEEEcch-hhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 77633221 1 3356777788889999899999999874 5544 2578999999999999999999853
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=129.16 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC-CCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP-FPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP-fpd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++..|+++ .|+++|+++.++..++.. +...++. +.+...+...++ +++++||+|+++..++
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQR-LSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 4789999999999999999875 899999999999988744 4444543 455555555543 5578899999875434
Q ss_pred cc-------c-cchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 465 PW-------H-IEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 465 ~w-------~-~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+. + .+...+|.++.|+|||||+|++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 43 2 144678899999999999999875543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-14 Score=139.95 Aligned_cols=101 Identities=9% Similarity=-0.123 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHH------------cCCCeEEEEcCCCCCCCCC-Cc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALE------------RGIPAISAVMGTERLPFPG-IV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~e------------rgl~~~~~v~d~e~LPfpd-~S 453 (796)
++.+|||+|||+|.++..|+++ .|+|+|+|+.|+..|+.+.... ....+.+.++|+..+|+++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 4789999999999999999875 7999999999998887432210 1235678889999999875 79
Q ss_pred eeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 454 FDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 454 FDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
||+|++..+ +++.. +...+|++++|+|||||++++.
T Consensus 102 fD~v~~~~~-l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 102 CAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEECcc-hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999764 44333 3467899999999999984443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=133.43 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=87.6
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
...+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. ...+.+...+...+|
T Consensus 22 ~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~- 91 (259)
T 2p35_A 22 ARDLLAQVPL----ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK- 91 (259)
T ss_dssp HHHHHTTCCC----SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-
T ss_pred HHHHHHhcCC----CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-
Confidence 3445555542 35689999999999999988754 899999999888766532 345677888888888
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++||+|+++.+ ++|..++..+|.+++|+|||||+|++..+
T Consensus 92 ~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 92 PAQKADLLYANAV-FQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp CSSCEEEEEEESC-GGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccCCcCEEEEeCc-hhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 7889999999875 77777999999999999999999999854
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=137.95 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ......+.+...+...+|+++++||+|++..+ ++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHL-WH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESC-GG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCc-hh
Confidence 35789999999999999999875 7999999999987776443 22234567788888899999999999999874 77
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|..++..+|.++.|+|||||+|++.
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 7778999999999999999999987
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=131.74 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||||||+|.++..|++. .|+++|+++.++..++.... ..++ .+.+...+...+++++++||+|+++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVN-KLGLKNVEVLKSEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence 35779999999999999888753 79999999999988875544 3444 47778888889999999999999987
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ +++..++..+|.++.|+|||||+|++..
T Consensus 115 ~-l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 115 T-FHELSEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp C-GGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-hhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 4 6655688999999999999999999874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=141.34 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=89.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---C--CeEEEeCChhhHHHHHHHHHHH--cCCCeEEEEcCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---R--GVLTMSFAPKDEHEAQVQFALE--RGIPAISAVMGT 444 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~--~V~gvDiSp~dl~~A~~q~A~e--rgl~~~~~v~d~ 444 (796)
.+.+.|...+. .++.+|||||||+|.++..|++ . .|+|+|+++.++..++...... ....+.+.+.+.
T Consensus 24 ~~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 98 (299)
T 3g5t_A 24 DFYKMIDEYHD-----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98 (299)
T ss_dssp HHHHHHHHHCC-----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT
T ss_pred HHHHHHHHHhc-----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH
Confidence 34455555443 2578999999999999999984 2 8999999999998887444332 144578888899
Q ss_pred CCCCCCC------CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 445 ERLPFPG------IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 445 e~LPfpd------~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
..++++. ++||+|+++.+ ++|. ++..+|.++.|+|||||+|++
T Consensus 99 ~~~~~~~~~~~~~~~fD~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 99 DDFKFLGADSVDKQKIDMITAVEC-AHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TCCGGGCTTTTTSSCEEEEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred HhCCccccccccCCCeeEEeHhhH-HHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 9998887 89999999875 7777 999999999999999999987
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-13 Score=133.23 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=87.6
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L 447 (796)
...+.+.+.++. ..++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ...+ .+.+...+...+
T Consensus 30 ~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~d~~~~ 104 (234)
T 3dtn_A 30 DFYGVSVSIASV---DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RGNL-KVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHTCCC---SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CSCT-TEEEEESCTTTC
T ss_pred HHHHHHHHHhhc---CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-ccCC-CEEEEeCchhcc
Confidence 334555555553 245789999999999999998864 7999999999887776332 1222 567888888899
Q ss_pred CCCCCceeEEEEcCCCcccccchH--HHHHHHHhhcCCCcEEEEEeCC
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGG--KLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~--~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
|++ ++||+|++..+ +++..++. .+|.+++|+|||||+|++....
T Consensus 105 ~~~-~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 105 DFE-EKYDMVVSALS-IHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp CCC-SCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCC-CCceEEEEeCc-cccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 888 89999999874 55554443 5999999999999999988543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=138.19 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=93.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.+...+.+.+..+ .++.+|||||||+|.++..|++. .|+++|+++.++..++.. +...+..+.+.+.|...
T Consensus 8 ~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 8 DYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATE 83 (284)
T ss_dssp HHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTT
T ss_pred HHHHHHHHHHhcc---CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhh
Confidence 5566666666432 35789999999999999999864 699999999998887733 33345567788888888
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|++ ++||+|++... +++..++..+|.+++|+|||||+|++..+.
T Consensus 84 ~~~~-~~fD~v~~~~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 84 IELN-DKYDIAICHAF-LLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCCS-SCEEEEEEESC-GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCcC-CCeeEEEECCh-hhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9885 69999999874 666668899999999999999999987554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=137.29 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=88.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
..+.+.++. .++.+|||||||+|.++..|+++ .|+++|+++.++..++.... ...+.+...+...+|+++
T Consensus 34 ~~l~~~~~~----~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPD----FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhc----cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC
Confidence 344555543 35789999999999999999875 79999999988877653322 345678888888999999
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++||+|++..+ +++..++..+|+++.|+|||||+|+++.
T Consensus 107 ~~fD~v~~~~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 107 DAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp TCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEEEchh-hhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999999874 6666789999999999999999999874
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=131.51 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=84.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC------CeEEEEcCCCCCCCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI------PAISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl------~~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++ +.+...++ .+.+...+...+|+++++||+|+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAE-TAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4789999999999999999876 8999999998887776 33333343 3567778888999999999999998
Q ss_pred CCCcccccchH---HHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 RCRVPWHIEGG---KLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~~~l~w~~d~~---~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+ +++..++. .+|.++.|+|||||+|++.....
T Consensus 109 ~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 109 AF-LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SC-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ch-hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 74 55555666 89999999999999999885443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=136.65 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE 445 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e 445 (796)
.......+.+...++.+ .++.+|||||||+|.++..|+++ .|+++|+++.++..++ ++ +.+...+..
T Consensus 23 ~~~~~~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~---~~~~~~d~~ 91 (240)
T 3dli_A 23 GSRELVKARLRRYIPYF---KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCE-----GK---FNVVKSDAI 91 (240)
T ss_dssp CCHHHHHHHHGGGGGGT---TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHH-----TT---SEEECSCHH
T ss_pred CCHHHHHHHHHHHHhhh---cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHH-----hh---cceeeccHH
Confidence 33344445555555542 35789999999999999998875 8999999998776554 22 456666665
Q ss_pred CC--CCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCCCCCch
Q 003776 446 RL--PFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPVYQKLP 499 (796)
Q Consensus 446 ~L--Pfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~ 499 (796)
.+ |+++++||+|+|... +++.. +...+|.++.|+|||||+|++..+ ....+.
T Consensus 92 ~~~~~~~~~~fD~i~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~ 147 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHF-VEHLDPERLFELLSLCYSKMKYSSYIVIESP-NPTSLY 147 (240)
T ss_dssp HHHHTSCTTCBSEEEEESC-GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE-CTTSHH
T ss_pred HHhhhcCCCCeeEEEECCc-hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC-CcchhH
Confidence 54 888999999999874 55555 448999999999999999998843 444433
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=137.97 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++..........+.+...+...+++++++||+|++..+ ++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV-IG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-GG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch-hh
Confidence 5789999999999999998865 7999999999988877443322122356777888888888889999999874 55
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..++ ..+|.++.|+|||||+|++..+
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 44443 4899999999999999998753
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=130.86 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=82.5
Q ss_pred EEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc-
Q 003776 392 VVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI- 468 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~- 468 (796)
+|||||||+|.++..|+.+ .|+++|+++.++..++... ...++.+.+...+...+++++++||+|+++. .+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA-QEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH-HHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 9999999999999999876 7999999999998887443 3445667778888888898889999999975 45443
Q ss_pred chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 469 EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..+|.++.++|||||+|++...
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 678999999999999999998853
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-13 Score=134.31 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=88.9
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
.++.+...++ ++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ....+.+...+...+|++
T Consensus 43 ~~~~l~~~~~------~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~ 113 (242)
T 3l8d_A 43 IIPFFEQYVK------KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE 113 (242)
T ss_dssp HHHHHHHHSC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHcC------CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC
Confidence 4455555554 3679999999999999999886 7999999998876665221 234567888888999999
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++||+|++..+ +++..++..+|.++.|+|||||+|++..
T Consensus 114 ~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 114 NEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp TTCEEEEEEESC-TTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccEEEEcCh-HhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 999999999874 6656688999999999999999999885
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.2e-13 Score=132.14 Aligned_cols=102 Identities=28% Similarity=0.333 Sum_probs=83.8
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||||||+|.++..|+.+ .|+++|+++.++..++... ...+..+.+...+...+++++++||+|+++.++.+++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 679999999999999999876 7999999999998887443 4445567788888888888889999999986411333
Q ss_pred c-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 468 I-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 468 ~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ++..+|.++.++|||||+|++..+
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3 678999999999999999998743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-13 Score=131.90 Aligned_cols=112 Identities=14% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
+...+...++. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..... . ..+.+...+...++ +
T Consensus 39 ~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~-~ 111 (216)
T 3ofk_A 39 HTQLLRLSLSS----GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-W-SHISWAATDILQFS-T 111 (216)
T ss_dssp HHHHHHHHTTT----SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-C-SSEEEEECCTTTCC-C
T ss_pred HHHHHHHHccc----CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-C-CCeEEEEcchhhCC-C
Confidence 33444444443 35679999999999999999886 899999999988777633322 2 25677888888888 6
Q ss_pred CCceeEEEEcCCCcccccch---HHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~---~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++||+|+|+.+ +++..++ ..+|.++.|+|||||+|+++.+
T Consensus 112 ~~~fD~v~~~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 112 AELFDLIVVAEV-LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SCCEEEEEEESC-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEEccH-HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 789999999874 5555555 5779999999999999999753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=141.08 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH-----------------HcCCCeEEEEcCCCCCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL-----------------ERGIPAISAVMGTERLPF 449 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~-----------------ergl~~~~~v~d~e~LPf 449 (796)
++.+|||+|||+|.++..|+++ .|+|+|+|+.++..|+.+... ..+..+.+.++|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 4679999999999999999986 799999999999877533321 013457888899988988
Q ss_pred CC-CceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 450 PG-IVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 450 pd-~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++ ++||+|++..+ +++.. +...++.++.|+|||||+|++.
T Consensus 148 ~~~~~FD~V~~~~~-l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 148 ANIGKFDRIWDRGA-LVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhh-hhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 64 89999998764 33332 4568999999999999999754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=148.69 Aligned_cols=108 Identities=21% Similarity=0.190 Sum_probs=87.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc----C----CCeEEEEcCCCCC------CC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER----G----IPAISAVMGTERL------PF 449 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er----g----l~~~~~v~d~e~L------Pf 449 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++....... | ..+.+...+...+ |+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 5789999999999998888763 79999999999988875443321 3 4567788888777 99
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
++++||+|+++.. +++..++..+|.+++|+|||||+|+++.......
T Consensus 163 ~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 209 (383)
T 4fsd_A 163 PDSSVDIVISNCV-CNLSTNKLALFKEIHRVLRDGGELYFSDVYADRR 209 (383)
T ss_dssp CTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSC
T ss_pred CCCCEEEEEEccc-hhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccc
Confidence 9999999999874 6766799999999999999999999975444333
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=125.94 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ...++ .+.+...+...+++ +++||+|+++.+ ++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~-l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIK-SIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV-LM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC-GG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-HhCCCCCcEEEEcchhhCCC-CCCceEEEEcch-hh
Confidence 4679999999999999999875 7999999999998887444 34444 56777888888888 789999999874 55
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. +...+|.++.|+|||||+|++..
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 444 67899999999999999988764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=128.45 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=81.8
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||||||+|.++..|+.+ .|+++|+++.++..++ ++...+.+...+...+|+++++||+|++..+ +++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELAR-----QTHPSVTFHHGTITDLSDSPKRWAGLLAWYS-LIHM 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHH-----HHCTTSEEECCCGGGGGGSCCCEEEEEEESS-STTC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-----HhCCCCeEEeCcccccccCCCCeEEEEehhh-HhcC
Confidence 679999999999999999886 8999999998876655 3344567788888889999999999999874 4444
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 468 I--EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 468 ~--d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ++..+|.++.|+|||||+|+++..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 116 GPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp CTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 789999999999999999998853
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=129.29 Aligned_cols=97 Identities=26% Similarity=0.292 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
++.+|||||||+|.++..| .. .|+++|+++.++..++... ..+.+...+...+|+++++||+|++..+ +++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTT-LEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESC-TTTC
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcCh-hhhc
Confidence 4789999999999999988 55 8999999998877665332 3456777888889999999999999874 6666
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 468 IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++..+|.++.|+|||||+|+++.+
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 6899999999999999999999854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=135.82 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=91.7
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AI 438 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~ 438 (796)
..+.......++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++. .+...++. +.
T Consensus 51 ~~l~~a~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~ 125 (302)
T 3hem_A 51 MTLEEAQYAKRKLALDKLNL----EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKE 125 (302)
T ss_dssp CCHHHHHHHHHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEE
T ss_pred CCHHHHHHHHHHHHHHHcCC----CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceE
Confidence 33444445556666666643 45789999999999999999875 79999999999988874 44455654 56
Q ss_pred EEEcCCCCCCCCCCceeEEEEcCCCcccccch---------HHHHHHHHhhcCCCcEEEEEeC
Q 003776 439 SAVMGTERLPFPGIVFDAVHCARCRVPWHIEG---------GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 439 ~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~---------~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+...+...+ +++||+|+++.. +++..++ ..+|.++.|+|||||+|++...
T Consensus 126 ~~~~d~~~~---~~~fD~v~~~~~-~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 126 VRIQGWEEF---DEPVDRIVSLGA-FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EEECCGGGC---CCCCSEEEEESC-GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EEECCHHHc---CCCccEEEEcch-HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 777777665 689999999874 5555344 7999999999999999998754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=138.59 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER- 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~- 446 (796)
..+...+.+.+. .++.+|||||||+|.++.+|+++ .|+++|+++.++..|+ +.+...+..+.+...+.+.
T Consensus 47 ~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeehHHhh
Confidence 344455555544 35789999999999999999875 7999999999988887 4444556666666666533
Q ss_pred -CCCCCCceeEEEEcCC---Ccccc-cchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 -LPFPGIVFDAVHCARC---RVPWH-IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 -LPfpd~SFDlVvss~~---~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.++++++||.|+.-.. ...+| .++..+|.+++|+|||||+|+|.
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 3678899999985211 12223 37789999999999999999975
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-13 Score=135.96 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
...++..+...++ .++.+|||||||+|.++..|+.. .|+++|+++.++..++. .+...+..+.+...+...
T Consensus 46 ~~~~~~~l~~~~~-----~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~ 119 (236)
T 1zx0_A 46 ETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWED 119 (236)
T ss_dssp GHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHH
T ss_pred HHHHHHHHHhhcC-----CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHH
Confidence 3445555555443 25779999999999999999874 79999999999988874 333445556777777777
Q ss_pred C--CCCCCceeEEEE-cCCCcccc---c-chHHHHHHHHhhcCCCcEEEEE
Q 003776 447 L--PFPGIVFDAVHC-ARCRVPWH---I-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 L--Pfpd~SFDlVvs-s~~~l~w~---~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ |+++++||+|++ .+. +..+ . +...+|.+++|+|||||+|++.
T Consensus 120 ~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 120 VAPTLPDGHFDGILYDTYP-LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp HGGGSCTTCEEEEEECCCC-CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred hhcccCCCceEEEEECCcc-cchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 7 899999999999 443 2211 1 3347799999999999999975
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=136.06 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCC-CCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLP-FPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LP-fpd~SFDlVvss~~~ 463 (796)
.+.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++ .+.+...+...++ +++++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~- 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQA-AEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV- 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC-
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch-
Confidence 3679999999999999999876 899999999999888744 333454 3567788888887 78899999999874
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..++..+|.++.|+|||||+|++...
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 66667899999999999999999998743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=129.52 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCchh-HHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASF-GGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~-a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.+ ...++.. .|+++|+++.++..++.. +...+..+.+...+...+|+++++||+|++..+ ++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 100 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF-SRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-IF 100 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH-HHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC-GG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEECchhhCCCCCCceeEEEEcCh-HH
Confidence 468999999999987 4444443 799999999999888744 334455667788888889999999999999864 44
Q ss_pred cc--cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WH--IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~--~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+. .++..+|.++.|+|||||+|++...
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 33 3678999999999999999998743
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=129.46 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=85.8
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC------CeEEEEc
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI------PAISAVM 442 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl------~~~~~v~ 442 (796)
..+.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++... ...++ .+.+...
T Consensus 17 ~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~ 91 (217)
T 3jwh_A 17 RMNGVVAALKQ----SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLIQG 91 (217)
T ss_dssp HHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEEeC
Confidence 34455555543 34679999999999999999874 7999999999988887443 22333 4677778
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
+...++++.++||+|+|+.. +++..++ ..+|.++.|+|||||+|++.
T Consensus 92 d~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 92 ALTYQDKRFHGYDAATVIEV-IEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp CTTSCCGGGCSCSEEEEESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred CcccccccCCCcCEEeeHHH-HHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 87777877789999999874 5544444 79999999999999987765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=129.46 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC------CeEEEEc
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI------PAISAVM 442 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl------~~~~~v~ 442 (796)
..+.+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++.... ..++ .+.+...
T Consensus 17 ~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 17 RLGTVVAVLKS----VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK-IDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT-GGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHhh----cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH-hhccccccCcceEEEeC
Confidence 34445555443 34679999999999999999864 79999999999988874433 2222 4677788
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
+...+++++++||+|+|..+ +++..++ ..+|.++.|+|||||+|++.
T Consensus 92 d~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 92 SLVYRDKRFSGYDAATVIEV-IEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp CSSSCCGGGTTCSEEEEESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccccccccCCCCEEEEHHH-HHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 88888888899999999874 5544433 68999999999999977765
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=130.94 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=89.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
.+.+.+.+.+... ..++.+|||||||+|.++..|+++ .|+++|+++.++..++... ...+..+.+...+...+|+
T Consensus 22 ~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~ 98 (246)
T 1y8c_A 22 KWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCc
Confidence 3444455544331 125789999999999999999875 7999999999998887443 4455566778888888888
Q ss_pred CCCceeEEEEcC-CCcccc---cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCAR-CRVPWH---IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~-~~l~w~---~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ ++||+|++.. + +++. .++..+|.++.|+|||||+|++..
T Consensus 99 ~-~~fD~v~~~~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 99 N-RKFDLITCCLDS-TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp S-CCEEEEEECTTG-GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred c-CCceEEEEcCcc-ccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7 8999999986 4 6555 467899999999999999999874
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-13 Score=140.77 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCCchhHHHH----hh--CCe----EEEeCChhhHHHHHHHHHHHcCCCe-EE--EEcCCCCCC------
Q 003776 388 KRTRVVLDVGCGVASFGGFL----FD--RGV----LTMSFAPKDEHEAQVQFALERGIPA-IS--AVMGTERLP------ 448 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~L----a~--~~V----~gvDiSp~dl~~A~~q~A~ergl~~-~~--~v~d~e~LP------ 448 (796)
.++.+|||||||+|.++..+ +. ..+ +++|+|+.|+..++.+.+...++.. .+ ...+.+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 34679999999999765433 22 123 9999999999988755443234432 22 233333433
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|++++||+|+|..+ ++|..|+..+|++++|+|||||+|++..
T Consensus 131 ~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 131 KELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 67899999999875 7777799999999999999999999874
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=128.94 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++... + +.+...+...++ ++++||+|+|+.+ +++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~ 114 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----G--RPVRTMLFHQLD-AIDAYDAVWAHAC-LLH 114 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----T--SCCEECCGGGCC-CCSCEEEEEECSC-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----C--CceEEeeeccCC-CCCcEEEEEecCc-hhh
Confidence 4679999999999999999876 7999999998887776433 2 345667777888 7789999999874 554
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.. ++..+|.++.|+|||||+|+++....
T Consensus 115 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 115 VPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 44 67899999999999999999985433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=133.22 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=89.3
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~ 439 (796)
.+.......++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++... ...++ .+.+
T Consensus 44 ~l~~a~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~ 118 (287)
T 1kpg_A 44 TLQEAQIAKIDLALGKLGL----QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRV 118 (287)
T ss_dssp CHHHHHHHHHHHHHTTTTC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEE
T ss_pred CHHHHHHHHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEE
Confidence 3444444455666666543 45789999999999999998843 8999999999988887433 33443 4566
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccc--cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~--~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...+...+| ++||+|++..+ +++. .++..+|.++.|+|||||+|++...
T Consensus 119 ~~~d~~~~~---~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 119 LLAGWEQFD---EPVDRIVSIGA-FEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp EESCGGGCC---CCCSEEEEESC-GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EECChhhCC---CCeeEEEEeCc-hhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 777777666 78999999874 4444 3678999999999999999998754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.5e-13 Score=138.76 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGT 444 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~ 444 (796)
..+.+.+.+.++. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++........ ..+.+...+.
T Consensus 43 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 43 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhcc----cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 3455556665543 34679999999999999999886 799999999999888744322111 1245667777
Q ss_pred CCCC---CCCCceeEEEEc-CCCcccccc-------hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 445 ERLP---FPGIVFDAVHCA-RCRVPWHIE-------GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 445 e~LP---fpd~SFDlVvss-~~~l~w~~d-------~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+| +++++||+|+|. .+ +++..+ ...+|.+++|+|||||+|++..+
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~-l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNS-FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTC-GGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChH-HhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7777 888999999997 43 665557 88999999999999999998843
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=136.06 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=87.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
.+.+.+.+.++. .++.+|||||||+|.++..|++. .|+|+|+++.++..++ .+. .+.+.+.+...+|+
T Consensus 21 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~-~~~~~~~d~~~~~~ 90 (261)
T 3ege_A 21 RIVNAIINLLNL----PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-----VHP-QVEWFTGYAENLAL 90 (261)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-----CCT-TEEEECCCTTSCCS
T ss_pred HHHHHHHHHhCC----CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-----hcc-CCEEEECchhhCCC
Confidence 455666666653 35789999999999999999875 8999999997765443 222 66778888899999
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++||+|++..+ +++..++..+|++++|+|| ||++++...
T Consensus 91 ~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 91 PDKSVDGVISILA-IHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp CTTCBSEEEEESC-GGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCCCEeEEEEcch-HhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 9999999999875 6656799999999999999 997776643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=140.33 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC-------eEEEEcCC------CCC--CCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-------AISAVMGT------ERL--PFP 450 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~-------~~~~v~d~------e~L--Pfp 450 (796)
.+.+|||||||+|..+..++.. .|+|+|+|+.|+..|+.+. ...+.. +.+.+.+. ..| +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-Hhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999766555443 6999999999999998544 333432 33555554 223 467
Q ss_pred CCceeEEEEcCCCcccc---cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWH---IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~---~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++||+|+|.++ +|+. .+...+|+++.|+|||||+|+++.+
T Consensus 127 ~~~FD~V~~~~~-lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFA-IHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESC-GGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECch-HHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 789999999875 6653 2558999999999999999998743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=132.87 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++. +...+.+...+...+|+ +++||+|+|....+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-----~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~ 123 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARR-----RNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGH 123 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHH-----HCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCEEEECChHHCCc-cCCcCEEEEcCchhhh
Confidence 3689999999999999999876 79999999988766653 22356788888888888 6899999998633665
Q ss_pred cc---chHHHHHHHHhhcCCCcEEEEE
Q 003776 467 HI---EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 467 ~~---d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. +...+|.++.++|||||+|++.
T Consensus 124 ~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 124 LAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp SCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53 5678899999999999999986
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-12 Score=129.14 Aligned_cols=101 Identities=26% Similarity=0.278 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++. .+...+..+.+...+...++++ ++||+|+|..+.+++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 4679999999999999999876 79999999999988874 4445566778888888888876 689999986543333
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +...+|.++.++|||||+|++..
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 32 56789999999999999999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=129.91 Aligned_cols=108 Identities=19% Similarity=0.355 Sum_probs=86.0
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~ 452 (796)
.+.+.++. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++.... ...+.+...+...+|++++
T Consensus 34 ~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPE----VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP---DTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC---SSSEEEEECCGGGCCCCTT
T ss_pred HHHHhccc----cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc---cCCceEEEcChhhccCCCC
Confidence 45555553 34789999999999999999875 79999999988766652221 1235677788888898889
Q ss_pred ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 453 SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+||+|++..+ +++..++..+|.++.++|||||+|+++.
T Consensus 107 ~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 107 SFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEecc-ccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 9999999874 6666688999999999999999999874
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-12 Score=127.73 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=88.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
.+.+.+.+.++. +.+|||||||+|.++..|+++ .|+++|+++.++..++.. +...+..+.+...+...++++
T Consensus 22 ~~~~~~~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~ 94 (243)
T 3d2l_A 22 EWVAWVLEQVEP------GKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEK-AMETNRHVDFWVQDMRELELP 94 (243)
T ss_dssp HHHHHHHHHSCT------TCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCGGGCCCS
T ss_pred HHHHHHHHHcCC------CCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHh-hhhcCCceEEEEcChhhcCCC
Confidence 455666666542 579999999999999999875 899999999999888744 344455677888888888876
Q ss_pred CCceeEEEEcCCCcccc---cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWH---IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~---~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++||+|++....+++. .++..+|.++.++|||||+|++..
T Consensus 95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8899999975225544 356789999999999999999874
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=132.87 Aligned_cols=98 Identities=27% Similarity=0.341 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++... .. .+...+...+|+++++||+|++...+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~-----~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG-----VK-NVVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT-----CS-CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhc-----CC-CEEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 4679999999999999999876 7999999998887765332 12 26778888899999999999997654555
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..++..+|.++.|+|||||+|++..+
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 56789999999999999999998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=134.76 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=81.9
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
..+|||||||+|.++..|+++ .|+++|+++.++..++.+. ...+ ..+.+.+.+...+|+ +++||+|+++...
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 459999999999999999886 8999999999998887443 3333 457788899888988 6899999986543
Q ss_pred ccccc--chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHI--EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++.. +...+|.++.|+|||||+|++...
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 44433 358999999999999999999843
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=128.21 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcC-CCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERG-IPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~erg-l~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++. .+ ..+.+...+...+ +++++||+|+++.. ++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-----~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~-l~ 118 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR-----HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHW-LA 118 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG-----GCCTTEEEEECCTTSC-CCSSCEEEEEEESC-GG
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh-----cCCCCeEEEecccccC-CCCCceeEEEEech-hh
Confidence 4679999999999999999875 89999999988766653 45 4467777888777 78899999999874 55
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..++ ..+|.++.|+|||||+|++...
T Consensus 119 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 119 HVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 55554 8999999999999999998854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-12 Score=125.44 Aligned_cols=113 Identities=24% Similarity=0.373 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L 447 (796)
..+.+.+.+.+ .++.+|||||||+|.++..|+.+ .|+++|+++.++..++...+. ...+.+...+...+
T Consensus 30 ~~~~~~l~~~~------~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 30 SSFRALLEPEL------RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHHHHGGGC------CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC
T ss_pred HHHHHHHHHhc------CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC
Confidence 34445554443 24679999999999999999875 799999999988777644321 23457778888888
Q ss_pred CCCCCceeEEEEcCCCcc---------cc------cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 448 PFPGIVFDAVHCARCRVP---------WH------IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~---------w~------~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++++||+|+++.+ ++ |. .+...+|.++.|+|||||+|++..+
T Consensus 102 ~~~~~~fD~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 102 DFPSASFDVVLEKGT-LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp CSCSSCEEEEEEESH-HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcccEEEECcc-hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 999899999998653 21 11 1457899999999999999998743
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=130.38 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=79.4
Q ss_pred CCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE 469 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d 469 (796)
+.+|||||||+|.++..|+.+ +++|+++.++..++ ++ .+.+...+...+|+++++||+|++..+ +++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~-----~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIAR-----KR--GVFVLKGTAENLPLKDESFDFALMVTT-ICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHH-----HT--TCEEEECBTTBCCSCTTCEEEEEEESC-GGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHH-----hc--CCEEEEcccccCCCCCCCeeEEEEcch-HhhccC
Confidence 679999999999999999877 99999998876655 23 346677888889998899999999874 666668
Q ss_pred hHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 470 GGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 470 ~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+..+|.++.++|||||+|++..+.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 899999999999999999998543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=134.14 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHh--h---CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLF--D---RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La--~---~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
++.+|||||||+|.++..|+ . ..|+++|+++.++..++. .+...++. +.+...+...+|++ ++||+|+++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 57899999999999999985 2 279999999999888873 33444544 67888888889988 9999999987
Q ss_pred CCcccccchHH---HHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHIEGGK---LLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~d~~~---~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ +++..++.. +|.++.|+|||||+|+++.
T Consensus 196 ~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 196 L-NIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp S-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred h-hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4 544445554 7999999999999999985
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=120.56 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=86.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~ 446 (796)
.....+.+.+.. .++.+|||+|||+|.++..++.+ .|+++|+++.++..++... ...++. +.+...+...
T Consensus 39 ~~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 39 KGTKILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENI-KLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCTTSCEEEEECSTTT
T ss_pred hHHHHHHHHccc----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECchhc
Confidence 344566666653 35789999999999999999875 8999999999998887443 444554 6667777654
Q ss_pred CCCCCCceeEEEEcCCCccc-ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPW-HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w-~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++++||+|+++.. +++ ..+...+|.++.++|||||++++...
T Consensus 114 -~~~~~~~D~v~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 114 -NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp -TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccccCCceEEEECCC-cccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 445678999999864 444 23567999999999999999998743
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=122.06 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++.. ...+.+...+ +|+++++||+|+++.. +++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~~~~~-l~~ 87 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFILFANS-FHD 87 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEEEESC-STT
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEEEccc-hhc
Confidence 4679999999999999999886 799999999887666533 3345556555 8888999999999874 555
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..++..+|.++.|+|||||+|++...
T Consensus 88 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 56889999999999999999998743
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=135.66 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc-CC----------------------------C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER-GI----------------------------P 436 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er-gl----------------------------~ 436 (796)
++.+|||||||+|.++..++.. .|+|+|+|+.|+..++....... .+ .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 4679999999999887766553 69999999999998864321110 00 1
Q ss_pred eE-EEEcCCCC-CCCC---CCceeEEEEcCCCcccc----cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 437 AI-SAVMGTER-LPFP---GIVFDAVHCARCRVPWH----IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 437 ~~-~~v~d~e~-LPfp---d~SFDlVvss~~~l~w~----~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. +..+|... .|++ .++||+|+|+++ +++. .+...+|.+++|+|||||+|+++.
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHH-HHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 12 56677654 4543 579999999985 5543 255789999999999999999985
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=122.98 Aligned_cols=124 Identities=14% Similarity=0.024 Sum_probs=87.6
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI-PAISAV 441 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v 441 (796)
++.......+.+.+.+.... ..++.+|||+|||+|.++..++.+ .|+++|+++.++..++.. +...++ .+.+..
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~v~~~~ 99 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN-IEALGLSGATLRR 99 (189)
T ss_dssp C---CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH-HHHHTCSCEEEEE
T ss_pred CccCcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEEEE
Confidence 33444455555555443211 124789999999999999977764 699999999999888744 444454 466777
Q ss_pred cCCCCCC--CCCCceeEEEEcCCCcccc-cchHHHHHHHHh--hcCCCcEEEEEeC
Q 003776 442 MGTERLP--FPGIVFDAVHCARCRVPWH-IEGGKLLLELNR--VLRPGGFFIWSAT 492 (796)
Q Consensus 442 ~d~e~LP--fpd~SFDlVvss~~~l~w~-~d~~~~L~Ei~R--VLKPGG~fv~s~~ 492 (796)
.|...++ +++++||+|+++.. +++. .+...+|.++.+ +|||||+|++...
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPP-YNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCC-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred ccHHHHHhhccCCCccEEEECCC-CCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 7765543 45689999999864 3332 467899999999 9999999998743
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=131.84 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=89.5
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
+.......++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++.. +...++. +.+.
T Consensus 71 l~~~~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~ 145 (318)
T 2fk8_A 71 LEEAQYAKVDLNLDKLDL----KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV-LASIDTNRSRQVL 145 (318)
T ss_dssp HHHHHHHHHHHHHTTSCC----CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCC----CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEE
Confidence 333334455566665543 45789999999999999988864 799999999998888743 3344543 5677
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccc--cchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~--~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
..+...+| ++||+|++..+ +++. .++..+|.++.|+|||||+|++..+.
T Consensus 146 ~~d~~~~~---~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 146 LQGWEDFA---EPVDRIVSIEA-FEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp ESCGGGCC---CCCSEEEEESC-GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ECChHHCC---CCcCEEEEeCh-HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 77777765 78999999874 5444 37789999999999999999987543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-12 Score=126.00 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++. +...+.+...+...+++ +++||+|+|....+++
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-----~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARK-----RLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHH-----HCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHH-----hCCCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 4689999999999999999875 79999999988876653 22345777888888887 6899999976544555
Q ss_pred cc---chHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HI---EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~---d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +...+|.++.++|||||+|++..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 52 45789999999999999999874
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=130.09 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++ +.+...++.+.+...+...+++ +++||+|+++.. +++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~-~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLN-ETKEKENLNISTALYDINAANI-QENYDFIVSTVV-FMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSS-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHcCCceEEEEeccccccc-cCCccEEEEccc-hhh
Confidence 4779999999999999999876 8999999999998887 4455566677888888888877 789999999874 554
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +...+|.++.++|||||+|++..
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 43 34699999999999999988753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=136.87 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC------------------------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG------------------------------ 434 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg------------------------------ 434 (796)
.+.+|||||||+|.++..|+.+ .|+|+|+++.++..|+........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4789999999999999998864 899999999999888744221100
Q ss_pred ----------------------------CCeEEEEcCCCCC-----CCCCCceeEEEEcCCCccccc------chHHHHH
Q 003776 435 ----------------------------IPAISAVMGTERL-----PFPGIVFDAVHCARCRVPWHI------EGGKLLL 475 (796)
Q Consensus 435 ----------------------------l~~~~~v~d~e~L-----Pfpd~SFDlVvss~~~l~w~~------d~~~~L~ 475 (796)
..+.+...+.... ++..++||+|+|... ++|.. ++..+|+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v-l~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL-TKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH-HHHhhhcCCHHHHHHHHH
Confidence 1355666665433 367789999999864 54431 5678999
Q ss_pred HHHhhcCCCcEEEEE
Q 003776 476 ELNRVLRPGGFFIWS 490 (796)
Q Consensus 476 Ei~RVLKPGG~fv~s 490 (796)
+++++|||||+|++.
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999987
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=126.03 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC---CCCCC-ceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL---PFPGI-VFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L---Pfpd~-SFDlVvss~~ 462 (796)
.+.+|||||||+|.++..|+.+ .|+++|+++.++..++ ++ ....+...+...+ ++..+ +||+|+++.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-----~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAAR-----AA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH-----HT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHH-----Hh-cccccchhhHHhhcccccccCCCccEEEECch
Confidence 4689999999999999999876 7999999998876665 22 2334555554444 55444 5999999875
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++ +.++..+|.++.|+|||||+|++..+
T Consensus 126 -l~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 126 -LL-HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp -CC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 55 77899999999999999999999854
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-11 Score=114.59 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++. +...+.+...+...+++++++||+|+++...+++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~-----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQ-----DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-----HCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHH-----hCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 4779999999999999999875 79999999988766653 2234567788888888888999999997433444
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.. +...+|.++.++|+|||++++..+.
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 32 4578999999999999999987543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-12 Score=130.87 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCC-CCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPF-PGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPf-pd~SFDlVvss~~ 462 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++... ...++ .+.+...+...+|+ ++++||+|++..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 5789999999999998888763 7999999999998887443 33443 35677788888888 6889999999874
Q ss_pred Cccc----ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPW----HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w----~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ ..++..+|.++.|+|||||+|++..+
T Consensus 143 -l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 143 -FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp -GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 554 13668999999999999999998853
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=120.71 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCC-CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLP-FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LP-fpd~SFDlVvss 460 (796)
++.+|||+|||+|.++..|+++ .|+++|+++.++..++. .+...++ .+.+...+...++ +.+++||+|+++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK-KLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-HHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 4789999999999999988764 79999999999988874 4445555 4567777776665 666899999998
Q ss_pred CCCcccc--------cchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 RCRVPWH--------IEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~~~l~w~--------~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
..+++.. .+...+|.++.++|||||+|++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 6432211 134579999999999999999886443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=127.57 Aligned_cols=98 Identities=28% Similarity=0.406 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++ +++..+.+...+...+|+++++||+|+++..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-----KRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-----HHCTTSEEEECCTTSCSBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-----HhCCCcEEEEcchhhCCCCCCceeEEEEeCC--
Confidence 4779999999999999998874 7999999998776554 3444567788888889999999999999752
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
..+|.++.|+|||||+|++.. +....+.+
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~ 186 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT-PGPRHLME 186 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE-ECTTTTHH
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE-cCHHHHHH
Confidence 235899999999999999874 34444433
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=124.60 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
..+|||||||+|.++..|+.. .|+++|+++.++..++...... ....+.+...+...++ ++++||+|+++.+ +++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~-l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF-FCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS-TTT
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh-hhc
Confidence 459999999999999999875 7999999999988877443321 1123577778887777 4569999999874 554
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.. +...+|.++.|+|||||+|++....
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 44 6789999999999999999987543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=122.24 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC----CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~----LPfpd~SFDlVvs 459 (796)
.++.+|||||||+|.++..|++ ..|+|+|+++.++.... +.|+.+ ..+.+.+.|... ++++ ++||+|++
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 4578999999999999988876 36999999998875544 445444 245556666654 3555 78999999
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. ..+.+...+|.+++|+|||||+|+++.
T Consensus 133 ~~---~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI---AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec---cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 74 223334556999999999999999884
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=134.45 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=86.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..++ +.+...++.+.+...|...+++++++||+|+++.. +++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~-~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp-~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQ-KGLEANALKAQALHSDVDEALTEEARFDIIVTNPP-FHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHH-HHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC-CCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc-hhh
Confidence 4679999999999999999876 8999999999998887 44555677778888888888777789999999864 444
Q ss_pred -----ccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 467 -----HIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 467 -----~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
..+...+|.++.++|||||+|+++....
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2255789999999999999999985543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=117.42 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCC-CCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT-ERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~-e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|.++..|+.+ .|+++|+++.++..++ +.+...++. ..+...+. ..++...++||+|++..
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL-SNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH-HHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH-HHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 35779999999999999998875 6999999999988887 344445554 23555554 44444448899999987
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +++ ..+|.++.++|||||+|++...
T Consensus 103 ~-~~~----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 103 G-LTA----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp --TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred c-ccH----HHHHHHHHHhcCCCCEEEEEee
Confidence 4 433 6899999999999999998743
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=121.09 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
.+.+|||||||+|.++..|+.. .|+|+|+++.++..++.. +...++ .+.+...+...++ +++++||+|++++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDK-VLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHH-HHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 4679999999999999988764 799999999999888744 444554 4667778877777 7788999999986
Q ss_pred CCccccc--------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHI--------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. .+|.. ....+|.++.++|||||.|++..
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4 45532 12589999999999999999874
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-11 Score=123.61 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=84.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChh------hHHHHHHHHHHHcCC--CeE
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPK------DEHEAQVQFALERGI--PAI 438 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~------dl~~A~~q~A~ergl--~~~ 438 (796)
.....+.+.+.. .++.+|||||||+|.++..|+. ..|+++|+++. ++..++... ...++ .+.
T Consensus 30 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~ 104 (275)
T 3bkx_A 30 AHRLAIAEAWQV----KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLT 104 (275)
T ss_dssp HHHHHHHHHHTC----CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEE
T ss_pred HHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceE
Confidence 334444454432 3578999999999999998875 37999999987 787776443 33443 356
Q ss_pred EEEcC---CCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 439 SAVMG---TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 439 ~~v~d---~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+...+ ...+|+++++||+|++..+ +++..++..++..+.++++|||+|++.....
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHS-LWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESC-GGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred EEECChhhhccCCCCCCCEEEEEEccc-hhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 66676 4667888899999999874 5555577776666777777799999875433
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-12 Score=127.02 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LP--fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+.. .|+|+|+++.++..++ +.+...++. +.+...|+.. ++ +++++||+|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~-~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACL-ASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 4679999999999999999864 5999999999998887 445556654 5666677655 34 788999999998
Q ss_pred CCCcccccch--------HHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. .+|+... ..+|.++.|+|||||+|++++
T Consensus 113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 64 5665422 259999999999999999884
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=119.78 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..++ +.+...+++ +.+...+..........||+|++...
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~- 131 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQ-KNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG- 131 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-
Confidence 35789999999999999999875 8999999999998887 445556665 66777777653222357999998753
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ +.. +|.++.++|||||+|++...
T Consensus 132 ~----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 132 G----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp C----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred c----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 2 456 99999999999999998743
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=124.12 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
.+.+|||||||+|.++..|+.+ .|+|+|+++.++..|+ +.+...++. +.+...|+..++ +++++||.|++++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~-~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH-HHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4679999999999999998764 7999999999998887 445555654 566777777776 7788999999876
Q ss_pred CCcccccc--------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHIE--------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ .+|... ...+|.++.|+|||||.|++.+
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 4 455432 3688999999999999999874
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-12 Score=130.93 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHH----------------HcCC--------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFAL----------------ERGI-------------- 435 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~----------------ergl-------------- 435 (796)
++.+|||||||+|.++..++. ..|+|+|+++.|+..++..... ..+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 468999999999996554443 3799999999999877642210 1110
Q ss_pred CeEEEEcCCCC-CCC-----CCCceeEEEEcCCCccc----ccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 436 PAISAVMGTER-LPF-----PGIVFDAVHCARCRVPW----HIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 436 ~~~~~v~d~e~-LPf-----pd~SFDlVvss~~~l~w----~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
...+..+|+.. +|+ ++++||+|+|+.+ ++| ..++..+|.+++|+|||||+|++..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhh-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 02345557655 664 4567999999975 666 3468899999999999999999873
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=126.83 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC-----CceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG-----IVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd-----~SFDlVvss~ 461 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ....+.+.+.+...+++.. ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcc
Confidence 5679999999999999999875 8999999999887776332 2235677788877765432 2499999986
Q ss_pred CCccccc--chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHI--EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ +++.. +...+|.++.|+|||||+|++...
T Consensus 133 ~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 G-FHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp S-STTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred h-hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 55555 668999999999999999887643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=121.15 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
++.+|||||||+|.++..|. ..|+++|+++. .+.+...+...+|+++++||+|++..+ +| +.
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~-~~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS-LM-GT 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC-CC-SS
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh-cc-cc
Confidence 46799999999999998885 68999999985 234677788889999999999999875 55 47
Q ss_pred chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 469 EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..+|.++.++|||||+|++...
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEc
Confidence 889999999999999999998754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-12 Score=145.25 Aligned_cols=115 Identities=11% Similarity=0.106 Sum_probs=86.8
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEE--E-Ec
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAIS--A-VM 442 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~--~-v~ 442 (796)
.....+.+.+.+.+.. .++.+|||||||+|.++..|+++ .|+|+|+++.++..++ +++++... + ..
T Consensus 90 ~~~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~-----~~~~~~~~~~~~~~ 160 (416)
T 4e2x_A 90 EHFAMLARDFLATELT----GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAR-----EKGIRVRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHHHHTTTC----SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHH-----TTTCCEECSCCSHH
T ss_pred HHHHHHHHHHHHHhCC----CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHH-----HcCCCcceeeechh
Confidence 3344555666665542 35789999999999999999886 8999999998775544 44554322 1 12
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+...+|+++++||+|++... +++..++..+|++++|+|||||+|++..+
T Consensus 161 ~~~~l~~~~~~fD~I~~~~v-l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANT-LCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESC-GGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhcccCCCCEEEEEECCh-HHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 23566778899999999874 66566999999999999999999999743
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=116.18 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=82.3
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF 449 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPf 449 (796)
..+...+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++... ...++. +.+...+......
T Consensus 30 ~~~l~~l~~----~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 30 AVTLSKLRL----QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNL-KKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp HHHHHHTTC----CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHH-HHHTCTTEEEEECCTTTTCT
T ss_pred HHHHHHcCC----CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEeCChhhhhh
Confidence 445555542 45789999999999999998864 6999999999998887444 444543 5666677644433
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...+||+|++... ++ +...+|.++.++|||||+|++...
T Consensus 105 ~~~~~D~i~~~~~-~~---~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 105 DLPDPDRVFIGGS-GG---MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp TSCCCSEEEESCC-TT---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCCCCCEEEECCC-Cc---CHHHHHHHHHHhcCCCeEEEEEec
Confidence 3367999999863 22 788999999999999999998743
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.6e-12 Score=124.63 Aligned_cols=96 Identities=18% Similarity=0.313 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC--CCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER--LPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~--LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++ ++. ..+...+... +|+++++||+|++..+ +
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~-----~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~~-l 103 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAK-----EKL--DHVVLGDIETMDMPYEEEQFDCVIFGDV-L 103 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHH-----TTS--SEEEESCTTTCCCCSCTTCEEEEEEESC-G
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-----HhC--CcEEEcchhhcCCCCCCCccCEEEECCh-h
Confidence 5789999999999999999875 7999999998765554 222 2456677654 7788899999999874 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..++..+|.++.++|||||+++++.+
T Consensus 104 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 104 EHLFDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp GGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5556889999999999999999999853
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=131.04 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC-
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC- 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~- 462 (796)
++.+|||||||+|.++..|+++ .|+|+|+++ ++..|+ +.+...++. +.+...+...+++++++||+|++...
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 4789999999999999999876 799999995 887776 555566665 67888899999999999999999641
Q ss_pred -CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 -RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 -~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+++..++..+|.++.|+|||||+|++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 1333347789999999999999999843
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=136.21 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=93.4
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHH------HHHc
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQF------ALER 433 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~------A~er 433 (796)
..|.......+..+.+.+.. .++.+|||||||+|.++..++.. .|+|+|+++.++..|+... +...
T Consensus 152 ~vYGEt~~~~i~~il~~l~l----~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~ 227 (438)
T 3uwp_A 152 EVYGETSFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY 227 (438)
T ss_dssp GGGGGTHHHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556666665543 46789999999999999888752 4999999998888776432 2333
Q ss_pred CC---CeEEEEcCCCCCCCCC--CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 434 GI---PAISAVMGTERLPFPG--IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 434 gl---~~~~~v~d~e~LPfpd--~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|+ .+.+..+|+..+||++ ..||+|+++. +.+..++...|.+++|+|||||+|++...+.+
T Consensus 228 Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn--~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 228 GKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp TBCCCEEEEEECCTTSHHHHHHHHTCSEEEECC--TTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCCCCCeEEEECcccCCccccccCCccEEEEcc--cccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 53 4677888888888754 4799999975 33456888999999999999999997754443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=120.17 Aligned_cols=95 Identities=20% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++. +.+...+... +.+++||+|+++.. +
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~-~ 135 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE-NAALNGIYDIALQKTSLLA--DVDGKFDLIVANIL-A 135 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESC-H
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEeccccc--cCCCCceEEEECCc-H
Confidence 4789999999999999998875 79999999999988874 44445554 6677776644 34589999999863 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ ....+|.++.++|||||+|+++
T Consensus 136 ~---~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 136 E---ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp H---HHHHHGGGSGGGEEEEEEEEEE
T ss_pred H---HHHHHHHHHHHhcCCCCEEEEE
Confidence 2 2578899999999999999986
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=117.83 Aligned_cols=103 Identities=17% Similarity=0.024 Sum_probs=79.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC-CCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e-~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||+||| +|.++..|+.+ .|+++|+++.++..++ +.+...++.+.+...+.. ..++++++||+|+++..+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYAR-RNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHH-HHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 57899999999 99999988764 7999999999998887 445556667777888753 335667899999998642
Q ss_pred ccccc------------------chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHI------------------EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~------------------d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++... ....+|.++.++|||||+|++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 22110 136789999999999999998643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=122.03 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCC-CCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFP-GIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfp-d~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|+++ .|+++|+++.++..++.. ...+.+...+. ..+|++ +++||+|+++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~--- 119 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSRR--- 119 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEES---
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeCC---
Confidence 4789999999999999999875 799999999888766533 44567888887 788998 89999999973
Q ss_pred ccccchHHHHHHHHhhcCCCcEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
++..+|.++.|+|||||+|+
T Consensus 120 ----~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ----GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ----CCSGGGGGHHHHEEEEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEE
Confidence 56789999999999999999
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=116.79 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=87.3
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~ 439 (796)
.+......+.+.+.+.+..+ .++.+|||+|||+|.++..++.+ .|+++|+++.++..++... ...++ .+.+
T Consensus 23 ~~rp~~~~~~~~~~~~l~~~---~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~ 98 (187)
T 2fhp_A 23 NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENI-AITKEPEKFEV 98 (187)
T ss_dssp SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHTCGGGEEE
T ss_pred CcCcCHHHHHHHHHHHHHhh---cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHhCCCcceEE
Confidence 34455566666666666432 24679999999999999987764 6999999999998887444 44454 3566
Q ss_pred EEcCCCC----CCCCCCceeEEEEcCCCcccccchHHHHHHH--HhhcCCCcEEEEEeC
Q 003776 440 AVMGTER----LPFPGIVFDAVHCARCRVPWHIEGGKLLLEL--NRVLRPGGFFIWSAT 492 (796)
Q Consensus 440 ~v~d~e~----LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei--~RVLKPGG~fv~s~~ 492 (796)
...+... +++++++||+|+++.. ++ ......++..+ .|+|||||+|++...
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 7777533 2334678999999863 22 23567777777 999999999998743
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=127.51 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=77.8
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC-
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF- 449 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf- 449 (796)
++..+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.|+..++.+.. ... ...+...++.
T Consensus 33 ~~~~il~~l~l----~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~-~~~-----v~~~~~~~~~~ 102 (261)
T 3iv6_A 33 DRENDIFLENI----VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALA-DRC-----VTIDLLDITAE 102 (261)
T ss_dssp HHHHHHHTTTC----CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTS-SSC-----CEEEECCTTSC
T ss_pred HHHHHHHhcCC----CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-hcc-----ceeeeeecccc
Confidence 34555555543 45789999999999999999876 89999999999987763322 111 1122222222
Q ss_pred ----CCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 450 ----PGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 450 ----pd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.+++||+|+++.. +++.. +...+|.++.++| |||.|+++...
T Consensus 103 ~~~~~~~~fD~Vv~~~~-l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRL-INRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CCGGGTTCCSEEEEESC-GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred cccccCCCccEEEEhhh-hHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 2578999999874 44332 5578999999999 99999998543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-11 Score=127.56 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=85.1
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
.|.+.|.+.+.. .++.+|||||||+|.++..++++ .|+++|+++ ++..++ +.+...++ .+.+...+...
T Consensus 51 ~~~~~i~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 51 SYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhhhhh----cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHH
Confidence 444556555443 35789999999999999999875 699999997 887776 44445554 46777888888
Q ss_pred CCCCCCceeEEEEcCC--CcccccchHHHHHHHHhhcCCCcEEE
Q 003776 447 LPFPGIVFDAVHCARC--RVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 447 LPfpd~SFDlVvss~~--~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
+++++++||+|++... .+.+..++..+|.++.|+|||||+|+
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9998889999999651 12333356789999999999999998
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-11 Score=125.97 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCCchhHHHH-hh---CCeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFL-FD---RGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~L-a~---~~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||||||+|.++..+ ++ ..|+++|+++.++..|+... .+.|+ .+.+..+++..+| +++||+|++..
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~-~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a- 196 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI-EGLGVDGVNVITGDETVID--GLEFDVLMVAA- 196 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHH-HHHTCCSEEEEESCGGGGG--GCCCSEEEECT-
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HhcCCCCeEEEECchhhCC--CCCcCEEEECC-
Confidence 56899999999999776544 33 38999999999999998544 44454 4567777777765 68999999864
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ ..+...+|.++.|+|||||+|++..
T Consensus 197 -~--~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 197 -L--AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -T--CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -C--ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 2 3578899999999999999999874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-11 Score=123.55 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-----cCC-CeEEEEcCCCC-CC--CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-----RGI-PAISAVMGTER-LP--FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-----rgl-~~~~~v~d~e~-LP--fpd~SFD 455 (796)
...+|||||||+|.++..|+.+ .|+|+|+++.++..|+...... .+. .+.+...++.. +| |++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 4678999999999999999864 6999999999998887443321 233 36677788765 77 8889999
Q ss_pred EEEEcCCCcccccc--------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCRVPWHIE--------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|++.+. .+|... ...+|.++.|+|||||.|++.+
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9998764 455321 1479999999999999999874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=116.47 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=82.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP 448 (796)
.....+.+.+.. .++.+|||||||+|.++..|++. .|+++|+++.++..++... ...++. +.+...+....+
T Consensus 64 ~~~~~~~~~l~~----~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLEL----TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRL-KNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHH-HHcCCCceEEEECCcccCC
Confidence 344555555543 45789999999999999999874 8999999999998887444 344544 567777776666
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.+.++||+|++..+ +++..+ ++.++|||||+|++....
T Consensus 139 ~~~~~~D~i~~~~~-~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAA-PPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSB-CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccc-hhhhhH------HHHHhcccCcEEEEEEcC
Confidence 66789999999864 444433 689999999999998553
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-11 Score=120.29 Aligned_cols=118 Identities=13% Similarity=0.003 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC---CeEEEEcC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMG 443 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl---~~~~~v~d 443 (796)
...+...+.+.+... .++.+|||+|||+|.++..++.+ .|+++|+++.++..++. .+...++ .+.+...|
T Consensus 37 ~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~v~~~~~d 112 (201)
T 2ift_A 37 GDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQS 112 (201)
T ss_dssp -CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSC
T ss_pred HHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHH-HHHHhCCCccceEEEECC
Confidence 334444454444321 13679999999999999986654 69999999999988874 4455565 46667777
Q ss_pred CCCC-C-CCCCc-eeEEEEcCCCcccccchHHHHHHH--HhhcCCCcEEEEEeCC
Q 003776 444 TERL-P-FPGIV-FDAVHCARCRVPWHIEGGKLLLEL--NRVLRPGGFFIWSATP 493 (796)
Q Consensus 444 ~e~L-P-fpd~S-FDlVvss~~~l~w~~d~~~~L~Ei--~RVLKPGG~fv~s~~~ 493 (796)
...+ + +++++ ||+|++... ++ ..+...+|..+ .|+|||||+|+++..+
T Consensus 113 ~~~~~~~~~~~~~fD~I~~~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 113 SLDFLKQPQNQPHFDVVFLDPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp HHHHTTSCCSSCCEEEEEECCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred HHHHHHhhccCCCCCEEEECCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5443 3 24678 999999864 22 23567888888 7789999999987543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=124.85 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=83.0
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC---C
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---E 445 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~---e 445 (796)
...|..-+..+. .+++.+|||+|||+|.++..|++. .|+++|+++.|+..+. +.+.+++ .+..+..+. .
T Consensus 63 aa~i~~gl~~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~~-ni~~V~~d~~~p~ 139 (233)
T 4df3_A 63 AAALLKGLIELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDRR-NIFPILGDARFPE 139 (233)
T ss_dssp HHHHHTTCSCCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTCT-TEEEEESCTTCGG
T ss_pred HHHHHhchhhcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhhc-CeeEEEEeccCcc
Confidence 344555554332 357899999999999999999874 6999999999987775 3333332 344455543 4
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..++...+||+|++.. .++.+...+|.++.|+|||||+|+++.
T Consensus 140 ~~~~~~~~vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 140 KYRHLVEGVDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GGTTTCCCEEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceEEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 4567788999999854 445577899999999999999999873
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.7e-11 Score=121.34 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCC---CCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFP---GIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfp---d~SFDlVvss 460 (796)
.+.+|||||||+|.++..|+. ..|+++|+++.++..++. .+...++ .+.+...+...++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK-LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467999999999999988873 279999999999988874 4444565 466777777777764 6799999996
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. + .+...++.++.++|||||+|++.
T Consensus 149 ~--~---~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 149 A--V---ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp C--C---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred c--c---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 5 2 46789999999999999999986
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=121.54 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCEEEEECCCC---chhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-----------CC
Q 003776 389 RTRVVLDVGCGV---ASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-----------FP 450 (796)
Q Consensus 389 ~~~~VLDIGCGt---G~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-----------fp 450 (796)
...+|||||||+ |.++..+.. .+|+++|+++.|+..++.... ....+.+...|...++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 357999999999 988766653 379999999999988875442 1234667777764421 23
Q ss_pred CCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+||+|+++.. +||..+ +..+|++++|+|||||+|+++..
T Consensus 155 ~~~~d~v~~~~v-lh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 155 FSRPAAIMLVGM-LHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TTSCCEEEETTT-GGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEEEech-hhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 348999999864 777665 78999999999999999999854
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=124.06 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC------------------------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI------------------------------ 435 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl------------------------------ 435 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.... ..+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4679999999999999888764 79999999999888764332 1110
Q ss_pred Ce-EEEEcCCCCC-CCCC---CceeEEEEcCCCcc----cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 436 PA-ISAVMGTERL-PFPG---IVFDAVHCARCRVP----WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 436 ~~-~~~v~d~e~L-Pfpd---~SFDlVvss~~~l~----w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+ .+...+...+ ++++ ++||+|+++.+ ++ +..++..+|.++.|+|||||+|++...
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC-LDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhh-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 04 5677777554 3455 89999999874 54 333678999999999999999998853
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=127.45 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
..|.+.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|++ .++..++ +.+...++. +.+...+..
T Consensus 49 ~~~~~~i~~~~~~----~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~ 122 (376)
T 3r0q_C 49 DAYFNAVFQNKHH----FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVE 122 (376)
T ss_dssp HHHHHHHHTTTTT----TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGG
T ss_pred HHHHHHHHhcccc----CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchh
Confidence 3445555554432 35789999999999999999875 79999999 8988886 555566655 678888888
Q ss_pred CCCCCCCceeEEEEcCCCcccc----cchHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWH----IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~----~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.++++ ++||+|++.. +.++ ..+..+|.++.|+|||||+|+++
T Consensus 123 ~~~~~-~~~D~Iv~~~--~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 123 DISLP-EKVDVIISEW--MGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp GCCCS-SCEEEEEECC--CBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hcCcC-CcceEEEEcC--hhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 88887 8999999964 2222 35678999999999999999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-10 Score=122.18 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+..+|||||||+|.++..|+++ .++++|+ +.++..++.. +...++ .+.+...|.. .|+|. .||+|++...
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRR-FLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHH-HHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHh-hhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 4679999999999999998863 6899999 8888888744 344454 3667777764 45555 8999999874
Q ss_pred Ccccccc--hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 463 RVPWHIE--GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 463 ~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+|+..+ ...+|++++++|||||+|++......
T Consensus 245 -lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 245 -LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp -GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred -hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 544444 37899999999999999998765443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-11 Score=129.98 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=84.8
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e 445 (796)
..|.+.|.+.+.. .++.+|||||||+|.++..++++ .|+++|+++ ++..++ +.+...++ .+.+...+..
T Consensus 36 ~~y~~~i~~~l~~----~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~ 109 (348)
T 2y1w_A 36 GTYQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHTGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhcccc----CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchh
Confidence 4456666666543 35789999999999999998875 799999996 776665 44455555 3677788888
Q ss_pred CCCCCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.++++ ++||+|++.....++.. .....|.+++|+|||||+++++
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 88776 67999999863233332 4568888999999999999865
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=111.71 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCce
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SF 454 (796)
.++.+|||+|||+|.++..|+++ .++++|+++ ++.. ..+.+...+...++ +++++|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 35779999999999999888653 799999998 6422 23566777777766 777899
Q ss_pred eEEEEcCCCcccccch-----------HHHHHHHHhhcCCCcEEEEEeC
Q 003776 455 DAVHCARCRVPWHIEG-----------GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 455 DlVvss~~~l~w~~d~-----------~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+|+++.. +++.... ..+|.++.++|||||.+++...
T Consensus 90 D~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 90 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999764 5544433 6889999999999999998743
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-11 Score=114.41 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG 443 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d 443 (796)
+......+.+.+.+.+... .+++.+|||+|||+|.++..|+.+ .|+++|+++.++..++... ...++.+.+...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d 96 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENV-RRTGLGARVVALP 96 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHH-HHHTCCCEEECSC
T ss_pred CCCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-HHcCCceEEEecc
Confidence 3344445555555544320 114679999999999999999875 6999999999998887444 3444456667776
Q ss_pred CCC-CCC---CCCceeEEEEcCCCcccccchHHHHHHHH--hhcCCCcEEEEEeC
Q 003776 444 TER-LPF---PGIVFDAVHCARCRVPWHIEGGKLLLELN--RVLRPGGFFIWSAT 492 (796)
Q Consensus 444 ~e~-LPf---pd~SFDlVvss~~~l~w~~d~~~~L~Ei~--RVLKPGG~fv~s~~ 492 (796)
... ++. ..++||+|+++.. ++ .+...++..+. ++|||||+|+++..
T Consensus 97 ~~~~~~~~~~~~~~~D~i~~~~~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 97 VEVFLPEAKAQGERFTVAFMAPP-YA--MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCC-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHHhhhccCCceEEEEECCC-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 543 221 1347999999863 22 45567777777 99999999998854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=126.72 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=84.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC----CeEEEEcC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI----PAISAVMG 443 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl----~~~~~v~d 443 (796)
.-...+.+.++. ..+.+|||+|||+|.++..++.+ .|+++|+++.++..++.. +...++ .+.+...+
T Consensus 209 ~~~~~ll~~l~~----~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n-~~~ngl~~~~~v~~~~~D 283 (375)
T 4dcm_A 209 IGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPEALDRCEFMINN 283 (375)
T ss_dssp HHHHHHHHTCCC----SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHCGGGGGGEEEEECS
T ss_pred HHHHHHHHhCcc----cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHH-HHHcCCCcCceEEEEech
Confidence 334566777764 33589999999999999999864 799999999999888744 444443 25567777
Q ss_pred CCCCCCCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 444 TERLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 444 ~e~LPfpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
... ++++++||+|+|+.. +++.. ....+|.++.++|||||.|++...
T Consensus 284 ~~~-~~~~~~fD~Ii~npp-fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 284 ALS-GVEPFRFNAVLCNPP-FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp TTT-TCCTTCEEEEEECCC-C-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhc-cCCCCCeeEEEECCC-cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 654 567789999999874 33221 124689999999999999998743
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=116.72 Aligned_cols=118 Identities=11% Similarity=-0.022 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT 444 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~ 444 (796)
....+.+.+.+.+... .++.+|||+|||+|.++..++.+ .|+++|+++.++..++ +.+...++ .+.+...|.
T Consensus 37 ~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~-~~~~~~~~~~v~~~~~D~ 112 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI-KNLATLKAGNARVVNSNA 112 (202)
T ss_dssp -CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCH
T ss_pred CHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCH
Confidence 3344455555554321 13679999999999999976654 7999999999998887 44455565 456677776
Q ss_pred CC-CCCCCCceeEEEEcCCCcccccchHHHHHHHHh--hcCCCcEEEEEeC
Q 003776 445 ER-LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNR--VLRPGGFFIWSAT 492 (796)
Q Consensus 445 e~-LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~R--VLKPGG~fv~s~~ 492 (796)
.. +++..++||+|++... ++ ......++..+.+ +|||||+|+++..
T Consensus 113 ~~~~~~~~~~fD~V~~~~p-~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPP-FR-RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHSSCCCCEEEEEECCS-SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEECCC-CC-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 44 5666789999999763 23 2356678888865 6999999998844
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.2e-11 Score=118.53 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH----HcCC-CeEEEEcCCCCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL----ERGI-PAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~----ergl-~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.|+..+. +.|+ ..++ .+.+.+.+...+|+++++ |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 5779999999999999999874 7999999999987543 2222 2344 467788888999998877 88875
Q ss_pred cCCC--cc--cccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCR--VP--WHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~--l~--w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+. .+ +..++..+|.++.|+|||||+|+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 4321 11 22356899999999999999999863
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-10 Score=120.59 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++... ...++ .+.+...|.. .|++. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELL-TGRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhh-hhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 35789999999999999999874 7899999 88888887443 34443 3667777765 56665 899999987
Q ss_pred CCcccccchH--HHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHH-HHhhcceeehhhhhhccceeEEEEE
Q 003776 462 CRVPWHIEGG--KLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQL-IKAMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 462 ~~l~w~~d~~--~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l-~~~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
. +|+..+.. .+|++++++|||||+|++............ ..+..+..+ ...........+...+...||.+.+
T Consensus 277 v-lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 277 V-LHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp C-GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred h-hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 5 54444443 799999999999999998754433322221 222222111 1122233445555567777887765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-11 Score=119.30 Aligned_cols=114 Identities=13% Similarity=-0.014 Sum_probs=66.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L 447 (796)
.+++.+.+.+.. ..++.+|||+|||+|.++..|+.+ .|+++|+++.++..++... ...++.+.+...|...
T Consensus 16 ~~~~~~~~~l~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 16 VLVEEAIRFLKR---MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNA-ERFGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHTT---CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-
T ss_pred HHHHHHHHHhhh---cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHhCCceEEEEcchHh-
Confidence 344555555432 135789999999999999998875 7999999999988877433 3333344445555444
Q ss_pred CCCC-----CceeEEEEcCCCccccc-----------c--------------hHHHHHHHHhhcCCCcE-EEEE
Q 003776 448 PFPG-----IVFDAVHCARCRVPWHI-----------E--------------GGKLLLELNRVLRPGGF-FIWS 490 (796)
Q Consensus 448 Pfpd-----~SFDlVvss~~~l~w~~-----------d--------------~~~~L~Ei~RVLKPGG~-fv~s 490 (796)
++++ ++||+|+++..++.... + ...+|.++.++|||||+ +++.
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5555 89999999754221110 0 06778889999999999 5554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=118.68 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..++. .+...++. +.+...|...++ ++.++||+|+++.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKR-SVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHH-HHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHH-HHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 5789999999999999999875 79999999999988874 44455554 677777776654 5678999999975
Q ss_pred CCccc---c----------------cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPW---H----------------IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w---~----------------~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.++.. . .+...+|..+.++|||||+|++..
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 42221 0 123578999999999999999863
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=133.64 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=88.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHH-----cCC-CeEEE
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALE-----RGI-PAISA 440 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~e-----rgl-~~~~~ 440 (796)
..++.+.+.+.. .++.+|||||||+|.++..|+++ .|+|+|+++.++..|+.+.... .++ .+.+.
T Consensus 708 qRle~LLelL~~----~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi 783 (950)
T 3htx_A 708 QRVEYALKHIRE----SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783 (950)
T ss_dssp HHHHHHHHHHHH----SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred HHHHHHHHHhcc----cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence 444555555543 24789999999999999999874 5999999999999887554432 133 36778
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++...+|+++++||+|++... +++..++ ..+|.++.|+|||| +|+++++
T Consensus 784 qGDa~dLp~~d~sFDlVV~~eV-LeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 784 DGSILEFDSRLHDVDIGTCLEV-IEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp ESCTTSCCTTSCSCCEEEEESC-GGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ECchHhCCcccCCeeEEEEeCc-hhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 8889999999999999999873 5544443 35899999999999 7777744
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-11 Score=115.57 Aligned_cols=114 Identities=14% Similarity=-0.011 Sum_probs=80.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER- 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~- 446 (796)
..+.+.+.+..+ .++.+|||+|||+|.++..|+.+ .|+++|+++.++..++. .+...++. +.+...+...
T Consensus 18 ~~~~~~~~l~~~---~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 18 VRGAIFNMIGPY---FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp CHHHHHHHHCSC---CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHHhh---cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHHHh
Confidence 344444444321 24679999999999999988875 79999999999988873 44445553 5566666544
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHH--hhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELN--RVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~--RVLKPGG~fv~s~~ 492 (796)
++...+.||+|+++.. ++ ......++..+. ++|||||+|++...
T Consensus 94 ~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPP-YA-KETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHBCSCEEEEEECCS-SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHhhcCCCCEEEECCC-CC-cchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 4444567999999853 21 234567777776 99999999998743
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=109.27 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=82.8
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL 447 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L 447 (796)
......+.+.+.. .++.+|||+|||+|.++..|+.. .|+++|+++.++..++.. +...++ .+.+...+...
T Consensus 21 ~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNL----NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN-LAKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHCC----CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH-HHHTTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHHcCCCcEEEEECCccc-
Confidence 3444555555542 35779999999999999999864 799999999999888744 444554 35666676654
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++++++||+|+++.. .+...+|.++.++ |||+|++..
T Consensus 95 ~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEe
Confidence 666789999999873 4678999999999 999999884
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=119.93 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=86.3
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
|..........+.+.+. ++.+|||+|||+|.++..++.+ .|+++|+++.++..++ +.+...++. +.+.
T Consensus 108 f~~~~~~~~~~l~~~~~------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~-~n~~~n~~~~~v~~~ 180 (278)
T 2frn_A 108 FSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMSAY 180 (278)
T ss_dssp CCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEEE
T ss_pred EcCCcHHHHHHHHHhCC------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEE
Confidence 44443334444554432 4789999999999999999874 4999999999998887 455556664 5677
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+|...++. .++||+|++... .....++.++.++|||||+|++...
T Consensus 181 ~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 181 NMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 788877766 689999999652 2346889999999999999998744
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-11 Score=122.09 Aligned_cols=97 Identities=20% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||+|||+|.++..+++. .|+++|+++.++..++ +.+...++.+.+...+... +++.++||+|+++. +..
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~-~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~--~~~ 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANL--YAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEEC--CHH
T ss_pred CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChhh-cCcCCCCCEEEECC--cHH
Confidence 4789999999999999988875 7999999999998887 4445566655566665433 24567899999975 221
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....++.++.++|||||+|+++.
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEe
Confidence 35789999999999999999874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-11 Score=122.08 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCC-hhhHHHH---HHHHHHHcCCC-eEEEEcCCCCCCCC-CCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFA-PKDEHEA---QVQFALERGIP-AISAVMGTERLPFP-GIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiS-p~dl~~A---~~q~A~ergl~-~~~~v~d~e~LPfp-d~SFDlVv 458 (796)
++.+|||||||+|.++..|+.+ .|+|+|++ +.|+..| + +.+...+++ +.+...+...+|.. ...||.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4779999999999999999843 69999999 6666554 3 223344554 67777888888642 25677777
Q ss_pred EcCCCcccc-------cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 459 CARCRVPWH-------IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 459 ss~~~l~w~-------~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ +|. .+...+|.+++|+|||||+|++..+
T Consensus 103 ~~~---~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~ 140 (225)
T 3p2e_A 103 ILF---PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTT 140 (225)
T ss_dssp EES---CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEEC
T ss_pred EeC---CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEe
Confidence 654 222 1346789999999999999998533
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.4e-12 Score=127.28 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..++ +.+...++ .+.+...|...++ ++++||+|+++.. +
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~-~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALAR-NNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP-W 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC-C
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC-c
Confidence 4789999999999999999876 7999999999998887 44555665 4677788876666 5679999999864 4
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++..+....+.+++++|+|||++++.
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHH
Confidence 44445556788999999999997753
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=122.34 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
..|.+.|.+.+.. .++.+|||||||+|.++..++++ .|+++|+++ ++..++ +.+...++. +.+...+..
T Consensus 24 ~~y~~ai~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~ 97 (328)
T 1g6q_1 24 LSYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhhHhh----cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchh
Confidence 3455555444332 24679999999999999998875 699999994 777766 444555553 677788888
Q ss_pred CCCCCCCceeEEEEcCC--CcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 446 RLPFPGIVFDAVHCARC--RVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~--~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.+++++++||+|++... .+.....+..+|.++.|+|||||++++
T Consensus 98 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88888889999999741 122223567899999999999999984
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=119.29 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++... ...++ .+.+...+... +++. .||+|++..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF-ADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 35789999999999999998864 6899999 98888887443 34454 36677777643 4443 399999987
Q ss_pred CCcccccch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIEG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +|+..+. ..+|++++++|||||+|++...
T Consensus 257 v-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 257 V-LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 4443344 4899999999999999998755
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=111.19 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
++.+|||+|||+|.++..|+++ .|+++|+++.++.. ...+.+...+... ++++++||+|+++.. +++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~ 91 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPP-YVPD 91 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTT
T ss_pred CCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCC-CccC
Confidence 3669999999999999999877 89999999987654 2334667777755 677789999999875 4432
Q ss_pred cc---------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 468 IE---------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 468 ~d---------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+ ...++.++.+.| |||+|++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 22 368899999999 999999874
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=116.51 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC----CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~----LPfpd~SFDlVvs 459 (796)
.++.+|||||||+|.++..|+++ .|+++|+++.++..++. .+... ..+.+...+... ++++ ++||+|++
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~ 149 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE 149 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE
Confidence 35789999999999999988764 69999999998877763 33322 446667777776 7777 78999995
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. ........+|.++.|+|||||+|++.
T Consensus 150 ~~---~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 DV---AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CC---CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ec---CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 32 11112267899999999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=114.81 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC---CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER---LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~---LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|+++ .|+++|+++.++..+. +.|+.+ ..+.+...+... +|+.+++||+|++
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 35789999999999999988763 6999999998776554 555554 445677777655 5666789999999
Q ss_pred cCCCcccccc-hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIE-GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d-~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
... ..+ ...++.++.++|||||+|+++..
T Consensus 154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 154 DVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 652 222 34568889999999999998743
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=124.00 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=84.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
..+.+.+.++. ....+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++...+...+...
T Consensus 184 ~~~~ll~~l~~----~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~~~~~~d~~~-- 256 (343)
T 2pjd_A 184 GSQLLLSTLTP----HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT-LAANGVEGEVFASNVFS-- 256 (343)
T ss_dssp HHHHHHHHSCT----TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTT--
T ss_pred HHHHHHHhcCc----CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCEEEEccccc--
Confidence 34566666642 23568999999999999998763 799999999999888744 44566666666666544
Q ss_pred CCCCceeEEEEcCCCccc----c-cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPW----H-IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w----~-~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.+++||+|+++.. +|+ + .+...+|.++.|+|||||.|++...
T Consensus 257 ~~~~~fD~Iv~~~~-~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 257 EVKGRFDMIISNPP-FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp TCCSCEEEEEECCC-CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cccCCeeEEEECCC-cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 34679999999874 443 2 2457899999999999999998754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-10 Score=121.14 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC--CCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL--PFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L--Pfpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+++ .++++|+ +.++..++.. +...++ .+.+...|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQ-TAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHH-HTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHH-HHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 4689999999999999999863 6999999 8888777633 333443 366777777554 676 789999998
Q ss_pred CCCccccc-chHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 461 RCRVPWHI-EGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 461 ~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
..+.+|.. +...+|++++|+|||||+|++.......
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 75223332 3358899999999999999987654433
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=112.47 Aligned_cols=95 Identities=17% Similarity=0.044 Sum_probs=76.5
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...++. +.+...+...++ +.++||+|++.. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--~ 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec--c
Confidence 679999999999999988753 7999999999988887 444455554 667777776665 457899999864 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+...+|.++.++|+|||+|++..
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 357799999999999999999873
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-11 Score=118.50 Aligned_cols=110 Identities=11% Similarity=0.170 Sum_probs=83.2
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
..+++.+...++ +..+|||||||+|.++..++.. .|+++|+++.|+..++ +++...|+...+.+.+...
T Consensus 37 d~fY~~~~~~l~------~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar-~~~~~~g~~~~v~~~d~~~ 109 (200)
T 3fzg_A 37 NDFYTYVFGNIK------HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS-SIIGKLKTTIKYRFLNKES 109 (200)
T ss_dssp HHHHHHHHHHSC------CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH-HHHHHSCCSSEEEEECCHH
T ss_pred HHHHHHHHhhcC------CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCccEEEecccc
Confidence 344555666664 3789999999999999999543 8999999999999988 4566667764444455433
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
. .+.++||+|++.. .+|...+....+..+++.|||||+||-
T Consensus 110 ~-~~~~~~DvVLa~k-~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 110 D-VYKGTYDVVFLLK-MLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp H-HTTSEEEEEEEET-CHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred c-CCCCCcChhhHhh-HHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 2 4568899999976 366554667788899999999999993
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-10 Score=108.78 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=80.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LP 448 (796)
....+.+.+.. .++.+|||+|||+|.++..|+.. .|+++|+++.++..++.. +...++ .+.+...+... +
T Consensus 21 ~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 21 VRCLIMCLAEP----GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHH-H
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH-HHHcCCCcceEEEecCHHH-h
Confidence 33444444432 35789999999999999999875 799999999998888744 344454 45566666533 2
Q ss_pred CCC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. +.||+|++... ++ +...+|.++.++|+|||++++...
T Consensus 95 ~~~~~~~D~v~~~~~-~~---~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGS-GG---ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HTTSCCEEEEEESCC-TT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCCCCEEEECCc-hH---HHHHHHHHHHHhcCCCcEEEEEec
Confidence 332 58999999763 22 468999999999999999998743
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=116.10 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCCCCCC---CCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERLP---FPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~e~LP---fpd~SFDlVvss~ 461 (796)
.+.+|||||||||.++..|+++ .|+|+|+++.|++.+. +....+.... .+...++ ++..+||+|++..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 4679999999999999988875 7999999999987643 2222222221 2222332 3445699999976
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+ ++ .+..+|.+++|+|||||.|++...|.+
T Consensus 160 s-f~---sl~~vL~e~~rvLkpGG~lv~lvkPqf 189 (291)
T 3hp7_A 160 S-FI---SLNLILPALAKILVDGGQVVALVKPQF 189 (291)
T ss_dssp S-SS---CGGGTHHHHHHHSCTTCEEEEEECGGG
T ss_pred e-Hh---hHHHHHHHHHHHcCcCCEEEEEECccc
Confidence 4 32 468999999999999999998755433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-10 Score=113.34 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=78.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
.....+.+.+.. .++.+|||||||+|.++..|+.. .|+++|+++.++..++... ...+ .+.+...+......
T Consensus 57 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 57 NLGIFMLDELDL----HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcccccc
Confidence 344555565542 35779999999999999999874 8999999999888776333 2233 56677777655322
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++||+|++..+ +++.. .++.++|||||+|++..+
T Consensus 131 ~~~~fD~v~~~~~-~~~~~------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 131 EEKPYDRVVVWAT-APTLL------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GGCCEEEEEESSB-BSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred cCCCccEEEECCc-HHHHH------HHHHHHcCCCcEEEEEEc
Confidence 4678999999864 44322 479999999999998844
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=111.11 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-------------- 448 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-------------- 448 (796)
++.+|||||||+|.++..|+++ .|+|+|+++.. ....+.+...+...++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccccc
Confidence 4679999999999999988753 59999999831 1123466777776666
Q ss_pred -----------CCCCceeEEEEcCCCcccc----cchH-------HHHHHHHhhcCCCcEEEEEe
Q 003776 449 -----------FPGIVFDAVHCARCRVPWH----IEGG-------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 -----------fpd~SFDlVvss~~~l~w~----~d~~-------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++++||+|+|..+ +++. .+.. .+|.++.++|||||.|++..
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 56789999999764 4442 1222 37899999999999999864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-09 Score=111.19 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT 444 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~ 444 (796)
....++.+.+.++ .++.+|||+|||+|.++..|+. ..|+++|+++.++..++. .+...++. +.+...+.
T Consensus 95 te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~v~~~~~d~ 168 (276)
T 2b3t_A 95 TECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDW 168 (276)
T ss_dssp HHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCST
T ss_pred HHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEcch
Confidence 3445555655553 2467999999999999998884 379999999999988874 44445654 56666665
Q ss_pred CCCCCCCCceeEEEEcCCCccc-----------c-------------cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPW-----------H-------------IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w-----------~-------------~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +++.++||+|+++..++.. | .....++.++.++|||||++++..
T Consensus 169 ~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 169 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 44 3446789999998543221 1 123678899999999999999873
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=113.79 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCCCC-----CCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLPFP-----GIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LPfp-----d~SFD 455 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++. +.+...+. ..++.. .++||
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQM-LNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH-HHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3679999999999999999873 799999999999888744 4444553 56677765 223322 27899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++... .++..+...++..+ ++|||||+|++...
T Consensus 137 ~V~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 137 MVFLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEEECSC-GGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEcCC-cccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9999753 34343445677777 99999999998643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=119.05 Aligned_cols=98 Identities=18% Similarity=0.014 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCC---CCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFP---GIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfp---d~SFDlVvs 459 (796)
..+.+|||||||+|.++..|+.. .|+++|+++.++..++ +.+...++. +.+...+.+.++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVE-RAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 35789999999999998888753 7999999999998887 445555664 66777777666643 479999999
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. + .+...++..+.++|||||+|++..
T Consensus 158 ~a--~---~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RA--V---APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ES--S---CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC--c---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 64 3 256789999999999999998753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-09 Score=114.94 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=76.3
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.+|||||||+|.++..|+++ .++++|+ +.++..++....... ...+.+...+... +++ +.||+|++... +|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~v-l~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRI-IG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESC-GG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchh-cc
Confidence 89999999999999998864 6999999 989888875443321 2236677777655 565 67999999874 44
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 466 WHIEG--GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 466 w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
...+. ..+|++++++|||||+|++.....
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 33333 489999999999999999886543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=112.97 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..++.......+. .+.+...+...+++++++||+|++..
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 174 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL 174 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence 45789999999999999888754 7999999999998887554443143 45677778777788888999999853
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++..+|.++.++|||||++++..+
T Consensus 175 ------~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 175 ------MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 2566899999999999999998753
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=119.49 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=73.3
Q ss_pred CCEEEEECCCCch----hHHHHhh--------CCeEEEeCChhhHHHHHHHHH-------------HH---------cC-
Q 003776 390 TRVVLDVGCGVAS----FGGFLFD--------RGVLTMSFAPKDEHEAQVQFA-------------LE---------RG- 434 (796)
Q Consensus 390 ~~~VLDIGCGtG~----~a~~La~--------~~V~gvDiSp~dl~~A~~q~A-------------~e---------rg- 434 (796)
..+|||+|||||. ++..|++ ..|+|+|+++.++..|+...- .+ .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5799999999997 5555553 269999999999988874310 00 00
Q ss_pred --------CCeEEEEcCCCCCCCC-CCceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 435 --------IPAISAVMGTERLPFP-GIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 435 --------l~~~~~v~d~e~LPfp-d~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
-.+.+...+....|++ .+.||+|+|... +++..+. ..+|.+++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv-liyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc-hHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1356677777666665 578999999763 5544433 68999999999999999985
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=116.95 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++.. +...++ .+.+...|... +++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHH-HHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 35689999999999999988864 5788898 8888888744 344455 36677777643 4443 499999987
Q ss_pred CCcccccch--HHHHHHHHhhcCCCcEEEEEeCC
Q 003776 462 CRVPWHIEG--GKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 462 ~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. +|+..+. ..+|+++.++|||||+|++....
T Consensus 258 v-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 258 V-LLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp C-GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred c-ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 4 4433333 58999999999999999987554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-10 Score=124.99 Aligned_cols=118 Identities=9% Similarity=-0.017 Sum_probs=83.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHH--HH----HHHHHcC--C-Ce
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEA--QV----QFALERG--I-PA 437 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A--~~----q~A~erg--l-~~ 437 (796)
...+..+.+.+.. .++.+|||||||+|.++..|+.. .|+|+|+++.++..| +. +.+...| . .+
T Consensus 228 p~~v~~ml~~l~l----~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 228 PNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 3444555555542 45789999999999999998873 599999999988877 22 3333446 2 34
Q ss_pred EEEEcCCCCC--CC--CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 438 ISAVMGTERL--PF--PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 438 ~~~v~d~e~L--Pf--pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+..++.... ++ ..++||+|+++.. + +..++..+|.++.|+|||||+|++..++.
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred EEEEcCccccccccccccCCCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 5555544322 22 2478999999753 3 44678889999999999999999864443
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=118.05 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++... ...++. +.+...|...+|++.. |+|++..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENA-AEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH-HHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHH-HhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 35789999999999999999864 7899999 99998887444 344443 6777788877777754 9999987
Q ss_pred CCcccccc--hHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 462 CRVPWHIE--GGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 462 ~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. +|...+ ...+|++++++|||||+|++....
T Consensus 265 v-lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 265 I-LYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp C-GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred h-hccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 4 443334 688999999999999999877543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-10 Score=114.85 Aligned_cols=114 Identities=9% Similarity=0.107 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC---eEEE
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP---AISA 440 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~ 440 (796)
....++..+....+. ++..+|||||||+|..+..|+.+ .|+++|+++.++..++ +.....++. +.+.
T Consensus 40 ~~~~~l~~l~~~~~~----~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 40 MTGQLLTTLAATTNG----NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK-ALFREAGYSPSRVRFL 114 (221)
T ss_dssp HHHHHHHHHHHHSCC----TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhhCC----CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcCcEEEE
Confidence 344555555554332 23459999999999999988762 7999999999998887 444455654 5666
Q ss_pred EcCCCC-CC-CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 441 VMGTER-LP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 441 v~d~e~-LP-fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+++.. ++ +++++||+|++.. +..+...+|.++.|+|||||+|++..
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQV----SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECC----CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCHHHHHHHhcCCCcCeEEEcC----cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 666532 33 3468999999864 23356789999999999999999863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-10 Score=118.15 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+..+|||||||+|.++..|+++ .++++|++ .++..++.... ..++. +.+...+....+++.+ ||+|++...
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 4689999999999999998864 79999999 88888874443 34443 6777788777777755 999999874
Q ss_pred Cccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 463 RVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 463 ~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+++.. +...+|+++.++|||||++++.....
T Consensus 242 -l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 242 -LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp -GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred -hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 44332 34799999999999999988875543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=7e-10 Score=115.52 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=83.6
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcC---CCeEEEEcCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERG---IPAISAVMGTER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~erg---l~~~~~v~d~e~ 446 (796)
..+...+.. .++.+|||+|||+|.++..|+.+ .|+++|+++.++..++...+...+ ..+.+...+...
T Consensus 89 ~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 89 AQIVHEGDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp HHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHcCC----CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 344444442 35779999999999999988763 799999999999888755544313 346677778777
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++++||+|++.. .++..+|.++.++|||||+|++..+
T Consensus 165 ~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 165 SELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cCCCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 888888999999853 2566899999999999999998754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=117.81 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCC-CCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLP-FPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LP-fpd~SFDlVvss~~ 462 (796)
..+|||||||+|.++..|+++ .++++|+ +.++..++.. +...++. +.+...+....+ +.++.||+|++...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKT-IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHH-HHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 789999999999999999864 7899999 7788777643 3444542 567777776655 23466999999874
Q ss_pred Ccccccch--HHHHHHHHhhcCCCcEEEEEeCC
Q 003776 463 RVPWHIEG--GKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 463 ~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|+..+. ..+|++++++|||||+|++....
T Consensus 258 -lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 258 -LHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp -GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 5444433 79999999999999999987543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-10 Score=114.77 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CC-CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LP-FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LP-fpd~SFDlVvss 460 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++ +.+...++ .+.+...+... +| ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK-QNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4679999999999999999872 7999999999998887 44445565 36777777644 44 446899999986
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +......+|.++.++|||||+|++...
T Consensus 150 ~----~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 A----AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp T----TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred C----cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 4 234577899999999999999998643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=113.43 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=80.8
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL 447 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L 447 (796)
..+...+.. .++.+|||+|||+|.++..|+.+ .|+++|+++.++..|+... ...++. +.+...|...
T Consensus 83 ~~i~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~- 156 (255)
T 3mb5_A 83 ALIVAYAGI----SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI-KWAGFDDRVTIKLKDIYE- 156 (255)
T ss_dssp HHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH-HHHTCTTTEEEECSCGGG-
T ss_pred HHHHHhhCC----CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHH-HHcCCCCceEEEECchhh-
Confidence 344454442 45789999999999999988754 7999999999998887444 444544 5666666653
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++++||+|++.. .++..+|.++.++|||||+|++..+
T Consensus 157 ~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 157 GIEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 37778999999854 2567899999999999999998743
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=117.70 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=81.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--C---eEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--G---VLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~---V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e 445 (796)
...+.+.+.+.. .++.+|||||||+|.++..|++. . |+++|+++.++..++. .+...++. +.+...+..
T Consensus 62 ~~~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~g~~~v~~~~~d~~ 136 (317)
T 1dl5_A 62 SLMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVERLGIENVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGG
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCeEEEECChh
Confidence 344556665543 45789999999999999998864 4 9999999999988874 44455554 566777776
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+.+.++||+|++... +++.. .++.++|||||++++..
T Consensus 137 ~~~~~~~~fD~Iv~~~~-~~~~~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVG-VDEVP------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCGGGCCEEEEEECSB-BSCCC------HHHHHHEEEEEEEEEEB
T ss_pred hccccCCCeEEEEEcCC-HHHHH------HHHHHhcCCCcEEEEEE
Confidence 65555678999999864 44322 57899999999999874
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=107.54 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e 445 (796)
.....+.+.+.. .++.+|||||||+|.++..|+. ..|+++|+++.++..++.... ..++. +.+...+..
T Consensus 64 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~ 138 (215)
T 2yxe_A 64 HMVGMMCELLDL----KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR-KLGYDNVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEESCGG
T ss_pred HHHHHHHHhhCC----CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcc
Confidence 334455555542 3578999999999999988875 369999999999988874443 33443 556666653
Q ss_pred CCCCC-CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 446 RLPFP-GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 446 ~LPfp-d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +++ .++||+|++..+ +++.. .++.++|||||+|++...
T Consensus 139 ~-~~~~~~~fD~v~~~~~-~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 L-GYEPLAPYDRIYTTAA-GPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp G-CCGGGCCEEEEEESSB-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred c-CCCCCCCeeEEEECCc-hHHHH------HHHHHHcCCCcEEEEEEC
Confidence 2 333 578999999874 44332 489999999999998744
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-10 Score=113.33 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-------CC-CeEEEEcCCCC-CC--CCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-------GI-PAISAVMGTER-LP--FPGIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-------gl-~~~~~v~d~e~-LP--fpd~S 453 (796)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++......+ ++ .+.+...|+.. ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4679999999999999998864 69999999999988875443321 44 46677777754 66 77899
Q ss_pred eeEEEEcCCCcccccc--------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHIE--------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||.|+..+. -.|... ...+|.++.++|||||+|++.+
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 999997653 233210 1489999999999999999863
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=120.01 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CC-----CCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GT-----ERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~-----e~LPfpd~SFDlVv 458 (796)
..+.+|||||||+|.++..|+++ .|+|+|+++.|+..+. ++......... +. ..++. ..||.+.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~ 108 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKI-----RSDERVVVMEQFNFRNAVLADFEQ--GRPSFTS 108 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHH-----HTCTTEEEECSCCGGGCCGGGCCS--CCCSEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHH-----HhCccccccccceEEEeCHhHcCc--CCCCEEE
Confidence 34679999999999999999875 6999999999987654 22222111110 11 22221 1234443
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+...++ ....+|.+++|+|||||+|++..
T Consensus 109 ~D~v~~----~l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 109 IDVSFI----SLDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp ECCSSS----CGGGTHHHHHHHSCTTCEEEEEE
T ss_pred EEEEhh----hHHHHHHHHHHhccCCCEEEEEE
Confidence 332111 13689999999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-10 Score=114.35 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CCCC--CCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LPFP--GIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LPfp--d~SFDlVv 458 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++. .+...++. +.+...++.. ++.. .++||+|+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE-NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4689999999999999999864 79999999999988874 44455554 6677777533 4432 34899999
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+.. +..+...+|.++.++|||||+|++....
T Consensus 142 ~d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDA----DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECS----CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECC----chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 864 2345678999999999999999987443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-10 Score=115.41 Aligned_cols=103 Identities=13% Similarity=0.004 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH---cCCC--eEEEEcCCCCC-------CCCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE---RGIP--AISAVMGTERL-------PFPGI 452 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e---rgl~--~~~~v~d~e~L-------Pfpd~ 452 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..++.. +.. .++. +.+...|...+ +++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n-~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRS-LELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHH-TTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 4679999999999999988764 799999999988887743 333 3443 56777777665 36778
Q ss_pred ceeEEEEcCCCccc----------------c-cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPW----------------H-IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w----------------~-~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|+++..+... . .....+|..+.++|||||+|++...
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999998532211 1 1357889999999999999998643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=116.90 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c---CCCeEEEEcCCCCC-C-CCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R---GIPAISAVMGTERL-P-FPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r---gl~~~~~v~d~e~L-P-fpd~SFDlVv 458 (796)
.+.+|||||||+|.++..|+++ .|+++|+++.++..|+..+... . ...+.+...|.... + +++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4689999999999999999875 7999999999998887554331 1 23466777775332 2 3467899999
Q ss_pred EcCCCccccc-c---hHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhc---ceeehhhhhhcccee
Q 003776 459 CARCRVPWHI-E---GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC---WELVSISKDTINKVG 531 (796)
Q Consensus 459 ss~~~l~w~~-d---~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~---W~~v~~~~~~l~dvG 531 (796)
+... .+++. . ...+|.++.|+|||||+|++.....+.........+..+...-.... +..+..+. ...+|
T Consensus 200 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~--~g~~g 276 (334)
T 1xj5_A 200 VDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYP--SGVIG 276 (334)
T ss_dssp ECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSG--GGEEE
T ss_pred ECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCccccceEEEeCCccc--CCceE
Confidence 9652 23332 1 36899999999999999998743333333223333333322211011 22233332 25677
Q ss_pred EEEEEe
Q 003776 532 IAVYRK 537 (796)
Q Consensus 532 ~~L~rk 537 (796)
|.+..+
T Consensus 277 f~~as~ 282 (334)
T 1xj5_A 277 FMLCST 282 (334)
T ss_dssp EEEEEC
T ss_pred EEEccc
Confidence 877664
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-10 Score=111.12 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC------CeEEEEcCCCCCCCCCCceeE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI------PAISAVMGTERLPFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl------~~~~~v~d~e~LPfpd~SFDl 456 (796)
.++.+|||||||+|.++..|++. .|+++|+++.++..++.... ..++ .+.+...+....+.+.++||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR-KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 35789999999999999988752 79999999999988874443 3322 456677776655555678999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|++... ++ .++.++.++|||||+|+++..
T Consensus 155 i~~~~~-~~------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAA-AP------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSB-BS------SCCHHHHHTEEEEEEEEEEES
T ss_pred EEECCc-hH------HHHHHHHHhcCCCcEEEEEEe
Confidence 999763 22 234689999999999999754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-10 Score=115.21 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-CC-CeEEEEcCCCCCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-GI-PAISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-gl-~~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.++.+|||+|||+|.++..|++. .|+++|+++.++..++... ... +. .+.+...+... ++++++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence 45789999999999999888753 7999999999988887443 333 44 35666677655 6777899999984
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +++..+|.++.++|||||+|++..+
T Consensus 187 ~------~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 187 I------PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp C------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred C------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 3567899999999999999998854
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=108.61 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC---CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL---PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L---Pfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|++ ..|+++|+++.++..+. +.+... ..+.+...+.... +...++||+|++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEE
Confidence 3577999999999999998875 37999999998887665 333333 3466777776552 112358999998
Q ss_pred cCCCcccccch-HHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... ..+. ..+|.++.++|||||+|++..
T Consensus 150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 150 DVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 652 2333 355999999999999999873
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=114.76 Aligned_cols=102 Identities=17% Similarity=0.032 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHc--CCC------------------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER--GIP------------------------ 436 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~er--gl~------------------------ 436 (796)
...+|||+|||+|.++..|+.+ .|+|+|+++.++..|+....... ++.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999888753 79999999999988874332110 110
Q ss_pred ---eE-------------EEEcCCCCCCC-----CCCceeEEEEcCCCcccc--------cchHHHHHHHHhhcCCCcEE
Q 003776 437 ---AI-------------SAVMGTERLPF-----PGIVFDAVHCARCRVPWH--------IEGGKLLLELNRVLRPGGFF 487 (796)
Q Consensus 437 ---~~-------------~~v~d~e~LPf-----pd~SFDlVvss~~~l~w~--------~d~~~~L~Ei~RVLKPGG~f 487 (796)
+. +...+...... ...+||+|+|+..++... .....+|.++.++|||||+|
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 22 66676644221 345899999976322211 12358999999999999999
Q ss_pred EEE
Q 003776 488 IWS 490 (796)
Q Consensus 488 v~s 490 (796)
++.
T Consensus 211 ~~~ 213 (250)
T 1o9g_A 211 AVT 213 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=110.40 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=77.2
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
...|...+..+. ..++.+|||+|||+|.++..|++. .|+++|+++.|+.... +.++++ ..+.+.+.|+....
T Consensus 62 a~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~-~~a~~r-~nv~~i~~Da~~~~ 138 (232)
T 3id6_C 62 AGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL-LVAQRR-PNIFPLLADARFPQ 138 (232)
T ss_dssp HHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH-HHHHHC-TTEEEEECCTTCGG
T ss_pred HHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhc-CCeEEEEcccccch
Confidence 345555555322 246889999999999999988763 7999999998865433 444444 35667777765432
Q ss_pred ---CCCCceeEEEEcCCCcccccchHHHH-HHHHhhcCCCcEEEEEe
Q 003776 449 ---FPGIVFDAVHCARCRVPWHIEGGKLL-LELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 ---fpd~SFDlVvss~~~l~w~~d~~~~L-~Ei~RVLKPGG~fv~s~ 491 (796)
...++||+|++..+ . ++....| ..+.++|||||+|+++.
T Consensus 139 ~~~~~~~~~D~I~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp GTTTTCCCEEEEEECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccccceEEEEecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 12468999999863 2 3444444 55677999999999884
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=118.45 Aligned_cols=141 Identities=13% Similarity=-0.029 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC--CCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg--l~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..|+++ .++++|++. ++. + +.+...+ ..+.+...|.. .++| +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~-~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--R-HRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--T-CCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--c-ccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 35789999999999999999874 578888843 322 1 1111112 23566777764 4455 899999987
Q ss_pred CCcccccch--HHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHH-HhhcceeehhhhhhccceeEEEEE
Q 003776 462 CRVPWHIEG--GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLI-KAMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 462 ~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~-~~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
. +|+..+. ..+|++++|+|||||+|++...............+..+..+. ..........+...+.+.||.+.+
T Consensus 256 v-lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 256 I-LHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp C-GGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred h-ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 4 5544444 699999999999999999876543332111111111111111 111122344455566777776655
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.7e-10 Score=124.61 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCEEEEECCC------CchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC------C
Q 003776 389 RTRVVLDVGCG------VASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP------G 451 (796)
Q Consensus 389 ~~~~VLDIGCG------tG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp------d 451 (796)
+..+||||||| +|..+..++. ..|+++|+++.|. .....+.+.++|...+||. +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 46899999999 7766665553 3799999999873 1234578888999998887 7
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++||+|+|.. .|+..+...+|.+++|+|||||+|++..
T Consensus 287 ~sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 287 GPFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CCEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 8999999975 4555578899999999999999999974
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-10 Score=111.02 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCCC-C----CCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLPF-P----GIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LPf-p----d~SFD 455 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++. +.+...+. ..++. . .++||
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3679999999999999999864 699999999999888744 4455554 56667665 22321 1 17899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++.. +..+...+|.++.++|||||+|++...
T Consensus 143 ~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 143 LIYIDA----DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999754 244678899999999999999998744
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=108.90 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=76.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP 448 (796)
....+.+.+.. .++.+|||||||+|.++..|++ ..|+++|+++.++..++... ...++. +.+...+. ..+
T Consensus 79 ~~~~~~~~l~~----~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~-~~~ 152 (235)
T 1jg1_A 79 MVAIMLEIANL----KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNL-ERAGVKNVHVILGDG-SKG 152 (235)
T ss_dssp HHHHHHHHHTC----CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCG-GGC
T ss_pred HHHHHHHhcCC----CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEECCc-ccC
Confidence 34445554432 3577999999999999998876 48999999999988887443 344543 45556665 455
Q ss_pred CCCC-ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGI-VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~-SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++.. .||+|++... +++.. .++.++|||||+|++...
T Consensus 153 ~~~~~~fD~Ii~~~~-~~~~~------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAG-APKIP------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CGGGCCEEEEEECSB-BSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCccEEEECCc-HHHHH------HHHHHhcCCCcEEEEEEe
Confidence 6544 4999999863 43322 478999999999999854
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=114.55 Aligned_cols=103 Identities=17% Similarity=0.013 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|.++..++. ..|+|+|+++.++..|+ +.+...|+ .+.+...|...++.+...||+|+++.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~-~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR-EAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH-HHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH-HHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 3577999999999999888775 48999999999998887 55556666 46788888888888778899999975
Q ss_pred CCccccc--------chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHI--------EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ..+.. ....++.++.++|||||.+++.++
T Consensus 281 P-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 281 P-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp C-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred C-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 22211 125788999999999999998743
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5e-09 Score=106.60 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++.+|||+|||+|.++..|+++ .|+++|+++.++..++... ...++ .+.+...+.....++++.||+|++..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL-KKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-- 166 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHH-HHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHH-HHcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence 35789999999999999988863 8999999999988887443 34454 35566666655443667899999853
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++..+|.++.++|||||+|++..+
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2567899999999999999998743
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=109.28 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=75.4
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPfpd~SFDlVvss~ 461 (796)
+.+|||||||+|.++..|+.+ .|+++|+++.++..++..+. ..++ .+.+...+... +|..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 679999999999999999864 79999999999988874443 3444 25666676533 455556 99999874
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ..+...+|.++.++|||||+|++...
T Consensus 135 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 2 34678999999999999999998643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=107.39 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=78.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----------CCeEEEeCChhhHHHHHHHHHHHc-----CCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----------RGVLTMSFAPKDEHEAQVQFALER-----GIP 436 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----------~~V~gvDiSp~dl~~A~~q~A~er-----gl~ 436 (796)
.+...+.+.+.. ...++.+|||||||+|.++..|++ ..|+++|+++.++..++....... ...
T Consensus 69 ~~~~~~~~~l~~--~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 146 (227)
T 1r18_A 69 HMHAFALEYLRD--HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 146 (227)
T ss_dssp HHHHHHHHHTTT--TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh--hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence 334445555431 113577999999999999988876 279999999999988875544321 124
Q ss_pred eEEEEcCCCCCCCCC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 437 AISAVMGTERLPFPG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.+...+... +++. ++||+|++... +++ ++.++.++|||||+|++...
T Consensus 147 v~~~~~d~~~-~~~~~~~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 147 LLIVEGDGRK-GYPPNAPYNAIHVGAA-APD------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEESCGGG-CCGGGCSEEEEEECSC-BSS------CCHHHHHTEEEEEEEEEEES
T ss_pred eEEEECCccc-CCCcCCCccEEEECCc-hHH------HHHHHHHHhcCCCEEEEEEe
Confidence 5666666544 4554 78999999864 433 23789999999999998754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-10 Score=117.66 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCEEEEECCCC--chhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC----CC--CCcee
Q 003776 389 RTRVVLDVGCGV--ASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP----FP--GIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGt--G~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP----fp--d~SFD 455 (796)
..++|||||||+ +.+...+++ .+|+++|.|+.|+..++..+.......+.+...|...++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 468999999997 333333332 489999999999988874443211113567778876642 11 34565
Q ss_pred -----EEEEcCCCcccccc---hHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 -----AVHCARCRVPWHIE---GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 -----lVvss~~~l~w~~d---~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|+++. .+||..+ +..+|+++.++|+|||+|+++.
T Consensus 158 ~~~p~av~~~a-vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 158 LTRPVALTVIA-IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp TTSCCEEEEES-CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cCCcchHHhhh-hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 466654 4888775 4689999999999999999984
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-09 Score=110.15 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeC-ChhhHHHHHHHHH----HHcCC----
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSF-APKDEHEAQVQFA----LERGI---- 435 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDi-Sp~dl~~A~~q~A----~ergl---- 435 (796)
.......+.+...... ..+.+|||||||+|.++..|+.. .|+++|+ ++.++..++.... ...++
T Consensus 62 ~~~~~l~~~l~~~~~~----~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~ 137 (281)
T 3bzb_A 62 SGARALADTLCWQPEL----IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVK 137 (281)
T ss_dssp CHHHHHHHHHHHCGGG----TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC---------
T ss_pred cHHHHHHHHHHhcchh----cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCC
Confidence 3344445555554332 24679999999999999988764 6999999 8999888874432 23333
Q ss_pred --CeEEEEcCCCC----CC--CCCCceeEEEEcCCCcccccchHHHHHHHHhhcC---C--CcEEEEEeC
Q 003776 436 --PAISAVMGTER----LP--FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLR---P--GGFFIWSAT 492 (796)
Q Consensus 436 --~~~~~v~d~e~----LP--fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLK---P--GG~fv~s~~ 492 (796)
.+.+...+... ++ ++.++||+|+++.+ +++..+...+|..+.++|+ | ||.+++...
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 23334333211 11 03578999999764 4445578899999999999 9 998776533
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=116.63 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+..+|||||||+|.++..|+++ .++++|+ +.++..++ +. ..+.+...|... |++. ||+|++... +
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-----~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~-l 277 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PL-SGIEHVGGDMFA-SVPQ--GDAMILKAV-C 277 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CC-TTEEEEECCTTT-CCCC--EEEEEEESS-G
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-----hc-CCCEEEeCCccc-CCCC--CCEEEEecc-c
Confidence 4689999999999999999875 4677798 76665443 11 235677777755 6664 999999874 5
Q ss_pred ccccchH--HHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHIEGG--KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~d~~--~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+..+.. .+|++++|+|||||+|++..
T Consensus 278 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 278 HNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5444555 99999999999999999874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-10 Score=110.25 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC---CCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF---PGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf---pd~SFDlVvss~~~l 464 (796)
+++.+|||||||. | ++|+++.|+..++.+.. ..+.+.+.+...+|+ ++++||+|+|+.+ +
T Consensus 11 ~~g~~vL~~~~g~-----------v-~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------S-PVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHKESSFDIILSGLV-P 73 (176)
T ss_dssp CTTSEEEEEECTT-----------S-CHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-T
T ss_pred CCCCEEEEecCCc-----------e-eeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCCCCCEeEEEECCh-h
Confidence 4578999999996 2 27888777766653321 135777888888887 8899999999875 7
Q ss_pred ccc-cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWH-IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~-~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|. .++..+|++++|+|||||+|++..
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 776 788999999999999999999863
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=103.77 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-------------CeEEEeCChhhHHHHHHHHHHHcCCCeEEE-EcCCCCCC-----
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-------------GVLTMSFAPKDEHEAQVQFALERGIPAISA-VMGTERLP----- 448 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-------------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~-v~d~e~LP----- 448 (796)
.++.+|||||||+|.++..|+++ .|+++|+++... -..+.+. ..+...++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 35789999999999999988753 499999998320 0123455 55544332
Q ss_pred ---CCCCceeEEEEcCC---Ccccccch-------HHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 ---FPGIVFDAVHCARC---RVPWHIEG-------GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 ---fpd~SFDlVvss~~---~l~w~~d~-------~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++||+|+|..+ ..+|..+. ..+|.++.|+|||||.|++...
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34568999999652 11222233 4789999999999999998744
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.5e-10 Score=113.22 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC---CCC---CCceeE
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL---PFP---GIVFDA 456 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L---Pfp---d~SFDl 456 (796)
++.+|||+|||+|.++..|+. ..|+++|+++.++..|+. .+...++. +.+...+...+ +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 467999999999998888875 379999999999998874 44455654 66777776542 455 268999
Q ss_pred EEEcCCCcccc--------------cchHHHHHHHHhhcCCCcEEEEE
Q 003776 457 VHCARCRVPWH--------------IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 457 Vvss~~~l~w~--------------~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|+|+..+++.. .....++.+++|+|||||.|++.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99986433221 01124567899999999988754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-09 Score=116.70 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
..|.+.|.+.... .++.+|||||||+|.++..++++ .|+++|.++ ++..|+ +.++..++. +.++..+.+
T Consensus 69 ~aY~~Ai~~~~~~----~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~-~~~~~n~~~~~i~~i~~~~~ 142 (376)
T 4hc4_A 69 DAYRLGILRNWAA----LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAR-EVVRFNGLEDRVHVLPGPVE 142 (376)
T ss_dssp HHHHHHHHTTHHH----HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhCHHh----cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHH-HHHHHcCCCceEEEEeeeee
Confidence 4555556543322 13779999999999998877764 699999997 766665 566666664 567777788
Q ss_pred CCCCCCCceeEEEEcC--CCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 446 RLPFPGIVFDAVHCAR--CRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~--~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.+.+| ..||+|+|-. ..+.+-..+..++....|.|||||.++.
T Consensus 143 ~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 143 TVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred eecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 88877 6799999832 1133333678899999999999999984
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=121.62 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=81.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
.|.+.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++ ++..|+ +.+...++ .+.+...+...
T Consensus 145 ~~~~~il~~l~~----~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 145 TYQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHTGGG----TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhh----cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhh
Confidence 344555555432 34679999999999999988875 799999998 876665 45555665 36777888887
Q ss_pred CCCCCCceeEEEEcCCCcccc-cchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWH-IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++++ +.||+|+|+....++. .+....|.++.++|||||+|++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7776 5899999975212222 23466778899999999999854
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=114.29 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH-H---cCCCeEEEEcCCCCCCC--CCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL-E---RGIPAISAVMGTERLPF--PGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~-e---rgl~~~~~v~d~e~LPf--pd~SFDlVv 458 (796)
.+.+|||||||+|.++..|++. .|+++|+++.++..++..+.. . ....+.+...|...++. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 4689999999999999999865 799999999998888754422 1 12346677777655443 468999999
Q ss_pred EcCCCcccccch----HHHHHHHHhhcCCCcEEEEEeC
Q 003776 459 CARCRVPWHIEG----GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 459 ss~~~l~w~~d~----~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+... .++.... ..+|.++.|+|||||+|++...
T Consensus 175 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9753 3332211 6889999999999999998744
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=112.66 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC---CCCCC-CceeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER---LPFPG-IVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~---LPfpd-~SFDlV 457 (796)
+.+|||||||+|.++..|++ ..|+++|+++.++..|+ .....+.+...+... +++.. .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 57999999999999998865 37999999998876654 223346777787766 36544 379999
Q ss_pred EEcCCCcccccchHHHHHHHHh-hcCCCcEEEEEe
Q 003776 458 HCARCRVPWHIEGGKLLLELNR-VLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~R-VLKPGG~fv~s~ 491 (796)
++... |.+...+|.++.| +|||||+|++..
T Consensus 157 ~~d~~----~~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNA----HANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESS----CSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECCc----hHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 98652 3477889999998 999999999863
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=113.59 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHc-----------CCCeEEEEcCCCCC--CC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-----------GIPAISAVMGTERL--PF 449 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~er-----------gl~~~~~v~d~e~L--Pf 449 (796)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..|+....... ...+.+...+...+ ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 3578999999999999998875 369999999999988875554321 12466777777665 56
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++++||+|++... ++..+|.++.++|||||+|++..+
T Consensus 184 ~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 184 KSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ----EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7788999999642 334589999999999999997643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=109.31 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCCC--CCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFP--GIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPfp--d~SFDlVvs 459 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ....++ .+.+...+... ++.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH-VKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH-HHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4679999999999999988764 799999999998888744 344454 35666666544 3433 578999999
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... ..+...+|.++.++|||||+|++..
T Consensus 133 ~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAA----KGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGG----GSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 752 2367899999999999999999873
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-09 Score=110.81 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.++.+|||+|||+|.++..|+.+ .|+++|+++.++..++. .+...++ .+.+...+...+ +++++||+|++.
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~ 188 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD 188 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence 35779999999999999888753 69999999999888874 4444454 355666666554 666789999985
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. .++..+|.++.++|+|||+|++..+
T Consensus 189 ~------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 189 V------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp C------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred C------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 2566899999999999999998743
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-09 Score=115.04 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++ + ...+.+...|... |+|.+ |+|++...
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~-~~~v~~~~~d~~~-~~p~~--D~v~~~~v- 270 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----A-FSGVEHLGGDMFD-GVPKG--DAIFIKWI- 270 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C-CTTEEEEECCTTT-CCCCC--SEEEEESC-
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----h-cCCCEEEecCCCC-CCCCC--CEEEEech-
Confidence 34689999999999999999874 6889998 66654432 1 1346677777655 77754 99999875
Q ss_pred cccccc--hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 464 VPWHIE--GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 464 l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+|+..+ ...+|++++++|||||+|++......
T Consensus 271 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 271 CHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp GGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 443333 35889999999999999998765443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=111.29 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHH--HHHcCCCeEEE--EcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQF--ALERGIPAISA--VMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~--A~ergl~~~~~--v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||||||+|.++..|+++ .|+|+|+++ |+..++... +...+..+.+. ..|+..+| +++||+|+|..+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~ 149 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG 149 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc
Confidence 35789999999999999999885 899999998 532211000 00011134566 66777766 679999999753
Q ss_pred Cc--ccccchH---HHHHHHHhhcCCCc--EEEEEeC
Q 003776 463 RV--PWHIEGG---KLLLELNRVLRPGG--FFIWSAT 492 (796)
Q Consensus 463 ~l--~w~~d~~---~~L~Ei~RVLKPGG--~fv~s~~ 492 (796)
.+ ++..+.. .+|.++.|+||||| .|++...
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 11 1111222 37899999999999 9998743
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=106.98 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CC-CC---CCceeE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-FP---GIVFDA 456 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LP-fp---d~SFDl 456 (796)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++. +.+...+... ++ ++ .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN-IERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4679999999999999999875 699999999999888744 4445553 5666776532 22 11 257999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
|++... ......+|.++.++|||||+|++....
T Consensus 137 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998652 335678999999999999999987443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-09 Score=112.23 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHH--HHcCCCeEEE--EcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFA--LERGIPAISA--VMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A--~ergl~~~~~--v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||||||+|.++..|+++ .|+|+|+++ |+..++.... ...+..+.+. ..|+..+| +++||+|+|..+
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~ 157 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG 157 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC
Confidence 35789999999999999999885 899999998 6322210000 0001134566 66777766 679999999763
Q ss_pred Ccccc----cchH---HHHHHHHhhcCCCc--EEEEEeC
Q 003776 463 RVPWH----IEGG---KLLLELNRVLRPGG--FFIWSAT 492 (796)
Q Consensus 463 ~l~w~----~d~~---~~L~Ei~RVLKPGG--~fv~s~~ 492 (796)
+.. .+.. .+|.++.|+||||| .|++...
T Consensus 158 --~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 158 --ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred --cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 221 1222 37899999999999 9998643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-09 Score=106.91 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---------CeEEEeCChhhHHHHHHHHHHHc-----CCCeEEEEcCCCCCC----CC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---------GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVMGTERLP----FP 450 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---------~V~gvDiSp~dl~~A~~q~A~er-----gl~~~~~v~d~e~LP----fp 450 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++....... ...+.+...+....+ +.
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 5789999999999999888752 69999999999988875544332 124667777766554 55
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++||+|++... +++ ++.++.++|||||+|++...
T Consensus 160 ~~~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGAS-ASE------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSB-BSS------CCHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCc-hHH------HHHHHHHhcCCCcEEEEEEc
Confidence 678999999763 332 35889999999999998743
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.7e-09 Score=109.83 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||+|||+|.++..|+.+ .|+++|+++.++..++ +.+...++ .+.+..+++..++. .+.||+|++...
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~-~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC-ENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH-HHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence 35789999999999999999864 7999999999998887 45555665 35677777766654 578999999863
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. +...++.++.++|||||+++++...
T Consensus 196 ~-----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 196 H-----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c-----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 1 5678999999999999999987543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-09 Score=114.60 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH----cCCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE----RGIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e----rgl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..|+++ .|+++|+++.++..|+..+... ....+.+...|... ++...++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4679999999999999999864 7999999999988877443221 12345666666533 3445678999999
Q ss_pred cCCCcccccch----HHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEG----GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~----~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... .++.... ..+|.++.++|||||+|++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 652 2322211 688999999999999999874
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-09 Score=109.34 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c---CCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R---GIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r---gl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..++++ .|+++|+++.++..++..+..- . ...+.+...|... ++...++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4689999999999999999875 6999999999998887554321 1 2346677777533 4444678999999
Q ss_pred cCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... .++.. ....++.++.|+|||||+|++..
T Consensus 155 d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 753 23221 13689999999999999999874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-09 Score=112.27 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c---CCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R---GIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r---gl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..|+++ .|+++|+++.++..++..+..- . ...+.+...|... ++...++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999999875 6999999999998887554331 1 2346667777533 4455688999999
Q ss_pred cCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... .++.. ....+|.++.|+|||||+|++..
T Consensus 175 d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 652 33221 22578999999999999999874
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-09 Score=111.33 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++. .+...|+ .+.+...|...++...++||+|++..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 35789999999999999988852 69999999999988874 4444565 45666677777665567899999842
Q ss_pred -----CCcccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 -----CRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 -----~~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
..++.+++ ...+|.++.++|||||+|++++...
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 11221111 1488999999999999999986543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=112.40 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCCC-----CCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFP-----GIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPfp-----d~SFD 455 (796)
++.+|||||||+|..+..|+.. .|+++|+++.++..++ +.+...++ .+.+..+++.. ++.. .++||
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH-PYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH-HHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3679999999999999999863 7999999999988887 44445555 36677777533 3321 47899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++.. +..+...+|.++.++|||||+|++...
T Consensus 139 ~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 139 FIFIDA----DKTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEES----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEEcC----ChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 999864 244667899999999999999998744
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-09 Score=112.39 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=72.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.+..+|||||||+|.++..|+++ .++++|+ +.++..++ . ...+.+...|... |+|.+ |+|++..+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~-~~~v~~~~~D~~~-~~p~~--D~v~~~~v- 268 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----Q-FPGVTHVGGDMFK-EVPSG--DTILMKWI- 268 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C-CTTEEEEECCTTT-CCCCC--SEEEEESC-
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----h-cCCeEEEeCCcCC-CCCCC--CEEEehHH-
Confidence 35689999999999999999863 6889999 65654432 1 2346777788766 77754 99999875
Q ss_pred cc-ccc-chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 464 VP-WHI-EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 464 l~-w~~-d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+| |.. +...+|++++++|||||+|++......
T Consensus 269 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 269 LHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp GGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 44 332 346899999999999999998765443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=115.10 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC--CCCCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--PFPGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L--Pfpd~SFDlVvss~~~ 463 (796)
..+|||||||+|.++..|+++ .|+++|+++.++..++..+.......+.+++.|...+ .+++++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~- 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF- 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-
Confidence 349999999999999999872 6899999999887776444321123466777775332 345689999999642
Q ss_pred ccc----ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPW----HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w----~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++ +.....+|.+++|+|||||+|++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 222 22237899999999999999998743
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-09 Score=109.58 Aligned_cols=98 Identities=9% Similarity=-0.041 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCC------CCCce
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPF------PGIVF 454 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPf------pd~SF 454 (796)
++.+|||||||+|..+..|+.. .|+++|+++.++..++.. ....++ .+.+...+... +|. +.++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV-IKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3679999999999999988753 799999999999888744 444565 35666666533 332 25789
Q ss_pred eEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+|++... ..+...+|.++.++|||||+|++..
T Consensus 158 D~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998642 3467899999999999999999874
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.4e-09 Score=109.04 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT 444 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~ 444 (796)
....++.+.+.++. .++.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...++. +.+...+.
T Consensus 108 te~lv~~~l~~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~-~n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 108 TEELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp HHHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESST
T ss_pred HHHHHHHHHHHhcc----cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECcc
Confidence 34445555554432 13579999999999999988754 7999999999998887 455556664 66777776
Q ss_pred CCCCCCCCce---eEEEEcCCCccc---------cc---------chHHHHHHHH-hhcCCCcEEEEE
Q 003776 445 ERLPFPGIVF---DAVHCARCRVPW---------HI---------EGGKLLLELN-RVLRPGGFFIWS 490 (796)
Q Consensus 445 e~LPfpd~SF---DlVvss~~~l~w---------~~---------d~~~~L~Ei~-RVLKPGG~fv~s 490 (796)
.. +++ ++| |+|+++..++.. |. +...+++++. +.|+|||+|++.
T Consensus 183 ~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 183 LE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred hh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 44 233 578 999998432221 11 1237899999 999999999986
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-09 Score=104.10 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC-----------CCce
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP-----------GIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp-----------d~SF 454 (796)
.++.+|||||||+|.++..|+++ .|+|+|+++.. ....+.+...|....+.. .++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 35789999999999999999875 79999999842 112356777777665421 1489
Q ss_pred eEEEEcCCCcc----cccc-------hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 455 DAVHCARCRVP----WHIE-------GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 455 DlVvss~~~l~----w~~d-------~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+|+|... .. +..+ ...+|..+.++|||||.|++...
T Consensus 93 D~Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 93 DDVVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99999642 11 1112 14678889999999999997643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.3e-09 Score=113.01 Aligned_cols=103 Identities=12% Similarity=-0.025 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCCC-C---CCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERLP-F---PGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~LP-f---pd~SFDlVvs 459 (796)
++.+|||+|||+|.++..++.+ .|+++|+++.++..++.. +...++. +.+...|+..+. . ..++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n-~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKEN-QVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4679999999999999999875 799999999999888744 4444553 566667654432 1 1468999999
Q ss_pred cCCCcc---------cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVP---------WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~---------w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+. +..+...+|.++.++|||||+|++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 643211 112457889999999999999877643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-09 Score=112.76 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c---CCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R---GIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r---gl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..++++ .|+++|+++.++..++..+..- . ...+.+...|... ++..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4679999999999999999865 6999999999988777443220 1 2345666776533 3334578999999
Q ss_pred cCCCccccc--ch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHI--EG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~--d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
... .++.. .. ..++.++.++|||||+|++...
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 752 23322 11 6899999999999999998754
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=109.43 Aligned_cols=103 Identities=12% Similarity=-0.001 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c---CCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R---GIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r---gl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..++++ .|+++|+++.++..++..+..- . ...+.+...|... ++...++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999999875 6999999999998887554321 1 2346667776533 4445678999998
Q ss_pred cCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
... .+|.. ....++.++.++|||||+|++...
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 642 22111 236889999999999999998743
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-09 Score=112.83 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-CeEEEeC----ChhhHHHHHHHHHHHcCCC-eEEEEc-CCCCCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-GVLTMSF----APKDEHEAQVQFALERGIP-AISAVM-GTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-~V~gvDi----Sp~dl~~A~~q~A~ergl~-~~~~v~-d~e~LPfpd~SFDlVvss 460 (796)
.++.+|||||||+|.++..|+++ .|+++|+ ++.++.... +...+.+ +.+... +...+| ..+||+|+|.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 35789999999999999999886 7999999 453331110 0111223 344444 555554 5689999997
Q ss_pred CCC--cccccchH---HHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCR--VPWHIEGG---KLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~--l~w~~d~~---~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+. .++..+.. .+|.++.|+|||||.|++...
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 532 12222332 578999999999999998643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=111.15 Aligned_cols=108 Identities=19% Similarity=0.005 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++...+...|+.. ++...+.||+|++....+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~-~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLD-QAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 4789999999999999999874 6999999999999887 4455566665566666533 2222344999999753222
Q ss_pred cc--------cchHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 466 WH--------IEGGKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 466 w~--------~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
.. .+...++..+.++|||||+|+++.......
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~ 332 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR 332 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence 11 133578889999999999999775544433
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-09 Score=112.29 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+..+|||||||+|.++..|+++ .++++|+ +.++..++ +. ..+.+...|... +++. ||+|++... +
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~-l 256 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----GS-NNLTYVGGDMFT-SIPN--ADAVLLKYI-L 256 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CB-TTEEEEECCTTT-CCCC--CSEEEEESC-G
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc-----cC-CCcEEEeccccC-CCCC--ccEEEeehh-h
Confidence 4689999999999999999864 6999999 87765543 11 235667777644 5653 999999875 5
Q ss_pred ccccchH--HHHHHHHhhcCC---CcEEEEEeCCC
Q 003776 465 PWHIEGG--KLLLELNRVLRP---GGFFIWSATPV 494 (796)
Q Consensus 465 ~w~~d~~--~~L~Ei~RVLKP---GG~fv~s~~~~ 494 (796)
|...+.. .+|++++|+||| ||+|++.....
T Consensus 257 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 5444555 999999999999 99999875543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-09 Score=109.75 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH----cCCCeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE----RGIPAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e----rgl~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... ....+.+...|... ++...++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4689999999999999999864 7999999999887776443211 02345666776533 3333578999999
Q ss_pred cCCCccccc--ch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHI--EG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~--d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
... .++.. .. ..++..+.++|||||+|++...
T Consensus 158 d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 642 33332 12 6899999999999999998743
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-09 Score=112.11 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH-Hc----CCCeEEEEcCCCC-CCCCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL-ER----GIPAISAVMGTER-LPFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~-er----gl~~~~~v~d~e~-LPfpd~SFDlVv 458 (796)
.+.+|||||||+|.++..|+++ +|+++|+++.++..++..+.. .. ...+.+...|... ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4689999999999999999875 699999999999888755433 12 2346677777543 444568899999
Q ss_pred EcCCCccc---cc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPW---HI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w---~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+... .++ .. ....++.++.|+|||||+|++..
T Consensus 157 ~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9753 444 21 13689999999999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.1e-09 Score=105.57 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CC------------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP------------ 448 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LP------------ 448 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++..+ ...++. +.+...+... ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4679999999999999988753 7999999999988887443 444543 4566665422 22
Q ss_pred --CCC--CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 449 --FPG--IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 --fpd--~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|++ ++||+|++... ..+...+|.++.++|||||+|++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999998752 3356789999999999999999874
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.80 E-value=9.4e-09 Score=109.05 Aligned_cols=109 Identities=22% Similarity=0.223 Sum_probs=76.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL 447 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L 447 (796)
..++.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++... ...+. .+.+...|+..+
T Consensus 15 ~i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 15 LIINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcceecc
Confidence 455666666653 35789999999999999999874 8999999999988776433 22232 356777888777
Q ss_pred CCCCCceeEEEEcCCCcccccch-HHHH--------------HHH--HhhcCCCcEEE
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEG-GKLL--------------LEL--NRVLRPGGFFI 488 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~-~~~L--------------~Ei--~RVLKPGG~fv 488 (796)
+++ +||+|+++.. ++|.... ..+| +|+ +++|+|||.++
T Consensus 90 ~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 DLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 776 7999999763 4443222 1222 233 47999999875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.9e-09 Score=104.97 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC----CCCCCCC--CceeE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT----ERLPFPG--IVFDA 456 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~----e~LPfpd--~SFDl 456 (796)
+.+|||||||+|.++..|+.. .|+++|+++.++..++..+. ..++. +.+...+. ..+++.+ ++||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 679999999999999999864 69999999999888874443 44542 55666664 2344444 78999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|++... ..+...+|.++.++|||||+|++...
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 998642 34667899999999999999998743
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=112.44 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=79.3
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCC--CCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLP--FPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LP--fpd~SFDlVvs 459 (796)
.++.+|||+|||+|..+..|+. ..|+++|+++.++..++ +.+...|+ .+.+...|...++ +++++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 3578999999999999998876 36999999999888776 44455566 4566667777666 66678999997
Q ss_pred c-----CCCcccccch----------------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 460 A-----RCRVPWHIEG----------------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 460 s-----~~~l~w~~d~----------------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. ...++.+++. ..+|.++.++|||||+|++++...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 2222222222 468999999999999999886544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=107.01 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCC----CCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPF----PGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPf----pd~SFDlV 457 (796)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..++ +.+...|+ .+.+...|...++. ..+.||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 3578999999999999988875 37999999999988776 44555666 45666677655543 25789999
Q ss_pred EEcC-CC----cc----c--------ccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 458 HCAR-CR----VP----W--------HIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 458 vss~-~~----l~----w--------~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
++.. |. +. | ......+|.++.++|||||+|++++....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 9862 10 11 0 12346889999999999999999865443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=108.05 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH-----------cCCCeEEEEcCCCC-CCCCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-----------RGIPAISAVMGTER-LPFPGIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e-----------rgl~~~~~v~d~e~-LPfpd~S 453 (796)
.+.+|||||||+|.++..++++ +|+++|+++.++..++..+ .. ....+.+...|... ++. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4689999999999999999875 7999999999988887544 11 12235666666432 333 578
Q ss_pred eeEEEEcCCCccccc--c--hHHHHHHHHhhcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHI--E--GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~--d--~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||+|++... .++.. . ...++.++.++|+|||+|++..
T Consensus 153 fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999753 23322 1 3678999999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-09 Score=122.93 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcC-CCeEEEEcCCCCC--CCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERG-IPAISAVMGTERL--PFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~erg-l~~~~~v~d~e~L--Pfpd~SFDlVvss~~~ 463 (796)
++.+|||||||.|.++..|+++ .|+|+|+++.++..|+ ..|.+.+ +.+.+.+.++++| ++.+++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e-- 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS-- 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES--
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc--
Confidence 4679999999999999999986 8999999999999987 5555555 6778888888777 56788999999987
Q ss_pred ccccc-chH--HHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHI-EGG--KLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~-d~~--~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..|. ++. ..+..+.+.|+++|..++...
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 44454 553 335567788888886655433
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-08 Score=108.04 Aligned_cols=100 Identities=11% Similarity=-0.034 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCC-CCC-CCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTER-LPF-PGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~-LPf-pd~SFDlVvss~ 461 (796)
++.+|||+| |+|.++..|+.. .|+++|+++.++..++ +.+...|+ .+.+...|... +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~-~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIE-KAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHH-HHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 468999999 999999888753 7999999999998887 44455566 56777788766 774 457899999986
Q ss_pred CCcccccchHHHHHHHHhhcCCCc-EEEEEeC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGG-FFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG-~fv~s~~ 492 (796)
. ++.. ....+|.++.++||||| .++++..
T Consensus 250 p-~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 P-ETLE-AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp C-SSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred C-CchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 3 2211 35788999999999999 4466643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=108.42 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC---CeEEEEcCCCC-CCC---CCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTER-LPF---PGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl---~~~~~v~d~e~-LPf---pd~SFDlVv 458 (796)
++.+|||+|||+|.++..++.+ .|+++|+++.++..|+ +.+...++ .+.+...|+.. ++. ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~-~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSL-AHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHH-HHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 3679999999999999999873 6999999999999887 55555666 46677777533 331 245899999
Q ss_pred EcCCCc----cccc----chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 459 CARCRV----PWHI----EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 459 ss~~~l----~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+..... .... +...++..+.++|+|||+|+++..+..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 965332 1122 234577888999999999999865433
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=109.99 Aligned_cols=100 Identities=19% Similarity=-0.011 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
++.+|||+|||+|.++..++.. .|+|+|+++.++..|+ +.+...|+ .+.+.+.|...+|+++++||+|+++..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~-~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE-MNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH-HHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5789999999999999988864 7999999999999887 55556676 568888999889988899999999753
Q ss_pred Ccccc------cch-HHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWH------IEG-GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~------~d~-~~~L~Ei~RVLKPGG~fv~s 490 (796)
+-... .+. ..++.++.|+| +|+.++++
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 11100 011 57788999999 44444443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=102.13 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC-C-CC----CCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL-P-FP----GIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L-P-fp----d~SFD 455 (796)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ....++ .+.+...+.... + ++ .++||
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL-WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3679999999999999999863 799999999998888744 444554 356666664221 1 11 16899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++... ..+...+|.++.++|||||++++...
T Consensus 148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999652 33567899999999999999998743
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=104.57 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CC-C-----CCCce
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-F-----PGIVF 454 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LP-f-----pd~SF 454 (796)
+..+|||||||+|..+..|+.+ .|+++|+++.++..++.. ....++. +.+...+... ++ + +.++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF-IRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3679999999999999888753 799999999998888744 4445653 5666666532 22 1 25789
Q ss_pred eEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 455 DlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+|++.. +..+...+|.++.++|||||++++...
T Consensus 149 D~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECC----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9999864 344668899999999999999998743
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=109.56 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||||||+|.++..|+++ .++++|+ +.++..++ + ...+.+...|... |++ .||+|++... +
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~-~~~v~~~~~d~~~-~~~--~~D~v~~~~v-l 261 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT-----G-NENLNFVGGDMFK-SIP--SADAVLLKWV-L 261 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC-----C-CSSEEEEECCTTT-CCC--CCSEEEEESC-G
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc-----c-CCCcEEEeCccCC-CCC--CceEEEEccc-c
Confidence 4679999999999999999874 5788898 65654432 1 1235666777655 666 4999999874 5
Q ss_pred ccccchH--HHHHHHHhhcCC---CcEEEEEeCC
Q 003776 465 PWHIEGG--KLLLELNRVLRP---GGFFIWSATP 493 (796)
Q Consensus 465 ~w~~d~~--~~L~Ei~RVLKP---GG~fv~s~~~ 493 (796)
|+..+.. .+|++++++||| ||+|++....
T Consensus 262 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 262 HDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp GGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 5555655 999999999999 9999987543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=110.92 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=80.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++ +.+...|+.+.+...|...++ ++.++||+|++..
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45789999999999999988863 7999999999988877 445556777777788877766 6667899999732
Q ss_pred -----CCcccccch----------------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 -----CRVPWHIEG----------------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 -----~~l~w~~d~----------------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
..++.+++. ..+|.++.++|||||+|++++...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 112222221 377999999999999999986544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-08 Score=105.63 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||||||+|.++..|+++ +++..|+ |..+..++...+....-.+.+...|....|++ .+|+|++... +
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v-l 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV-L 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS-G
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee-c
Confidence 4679999999999999999875 5677776 55665554332221122356667776555555 4799999875 4
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 465 PWHIEG--GKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 465 ~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|...|. ..+|++++++|+|||++++......
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 433443 5789999999999999998765443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-08 Score=107.20 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC---CeEEEEcCCCCC-C-C--CCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTERL-P-F--PGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl---~~~~~v~d~e~L-P-f--pd~SFDlVv 458 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ .+.+...|...+ + + ....||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999999875 6999999999998887 45555676 466777775443 2 1 146899999
Q ss_pred EcCCCccc--------ccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 459 CARCRVPW--------HIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 459 ss~~~l~w--------~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+....... ......++.++.++|+|||+|+++..+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 97532111 12456889999999999999999865443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=108.88 Aligned_cols=105 Identities=17% Similarity=0.055 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC-CC---CCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL-PF---PGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L-Pf---pd~SFDlVvs 459 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ .+.+...+...+ +. ...+||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~-~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 4789999999999999999875 6999999999998887 44555666 466777775443 21 2568999999
Q ss_pred cCCCcccc--------cchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 460 ARCRVPWH--------IEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 460 s~~~l~w~--------~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
........ .+...++.++.++|+|||+|+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 65322111 234678899999999999999875543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-08 Score=114.73 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-CCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-FPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-fpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..|+.+ .|+++|+++.++..++ +.+...|+.+.+...|...++ +..++||+|++..
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 35789999999999999988853 6999999999988887 455556766566666665554 3457899999621
Q ss_pred -----CCcccccch----------------HHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 462 -----CRVPWHIEG----------------GKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 462 -----~~l~w~~d~----------------~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
..+..+++. ..+|.++.++|||||+|++++....
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 111111111 5788999999999999999865443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=96.23 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..|+.. .|+++|+++.++..++.... .+.+...+...+| ++||+|+++.. ++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D~v~~~~p-~~ 121 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPP-FG 121 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCC-C-
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCeeEEEECCC-ch
Confidence 4679999999999999999875 59999999988877763322 4577788877765 68999999875 33
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEE
Q 003776 466 WHI--EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
+.. ....++.++.++| |+.+++
T Consensus 122 ~~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 122 SVVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp ------CHHHHHHHHHHE--EEEEEE
T ss_pred hccCchhHHHHHHHHHhc--CcEEEE
Confidence 332 2357899999999 554443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=94.15 Aligned_cols=96 Identities=11% Similarity=-0.041 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..|+.. .|+++|+++.++..++.. +...++.+.+...+...+| .+||+|+++..+..
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 4779999999999999999875 599999999998877633 3344556777788877765 48999999875322
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.. ....+|.++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 221 3357889999999 6655543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=100.76 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=80.6
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL 447 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L 447 (796)
+..+.+.++ ++.+|||||||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...|....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~-~N~~~~gl~~~I~~~~gD~l~~ 84 (230)
T 3lec_A 12 LQKVANYVP------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL-KNVSEHGLTSKIDVRLANGLSA 84 (230)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhhc
Confidence 455666555 3689999999999999999875 6999999999998887 555566664 66777776554
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+...||+|+... +.- .-...+|.+..+.|+++|+|+++.
T Consensus 85 ~~~~~~~D~IviaG--mGg-~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 85 FEEADNIDTITICG--MGG-RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CCGGGCCCEEEEEE--ECH-HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cccccccCEEEEeC--Cch-HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 44444799987643 221 124577888899999999999984
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=109.55 Aligned_cols=105 Identities=18% Similarity=0.086 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC-CC---CCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-PF---PGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L-Pf---pd~SFDlVvss~ 461 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++. +.+...++..+ +. ...+||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3679999999999999999864 8999999999998887 445555654 66777775443 21 257899999965
Q ss_pred CCcccc--------cchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 CRVPWH--------IEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 ~~l~w~--------~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
..+... .....++.++.++|+|||+|+++....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 322211 134578899999999999999986543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-08 Score=103.46 Aligned_cols=94 Identities=18% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH----HcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL----ERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~----ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.+.+|||||||+|.++..++++ .|+++|+++.++..|+..+.. -....+.+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 4679999999999999988764 799999999888777643211 11234566666665543 7899999964
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.++..++..+.++|||||+|++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 245569999999999999999863
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-08 Score=101.36 Aligned_cols=108 Identities=12% Similarity=0.002 Sum_probs=80.1
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL 447 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L 447 (796)
+..+.+.++ ++.+|||||||+|.++..|+.. .|+++|+++..+..|+ +.+...|+. +.+...|....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~I~v~~gD~l~~ 84 (244)
T 3gnl_A 12 LEKVASYIT------KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ-KQVRSSGLTEQIDVRKGNGLAV 84 (244)
T ss_dssp HHHHHTTCC------SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEecchhhc
Confidence 455566555 3679999999999999999875 6999999999998887 555566764 56667765444
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+...||+|+... +.- .-...+|.+..+.|+++|+|+++.
T Consensus 85 ~~~~~~~D~Iviag--mGg-~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 85 IEKKDAIDTIVIAG--MGG-TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CCGGGCCCEEEEEE--ECH-HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cCccccccEEEEeC--Cch-HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 44434699988653 221 124577888999999999999984
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=102.65 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++.. +.. .|+++|+++.++..++ +.+...++ .+.+...|...+. +.||+|++...
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-- 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP-- 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT--
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc--
Confidence 478999999999999998 754 7999999999998887 45555665 3677777776655 78999999742
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ....++..+.++|+|||+|++...
T Consensus 268 ~---~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 K---FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp T---TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred H---hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1 134789999999999999987643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-08 Score=115.49 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC-CCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER-LPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~-LPfpd~SFDlVvss~ 461 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++. +.+...|... ++...++||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~-~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAE-RNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 3679999999999999998864 5999999999999887 444556654 6777777643 455567899999975
Q ss_pred CCcc--------cc--cchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 462 CRVP--------WH--IEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 462 ~~l~--------w~--~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
..+. +. .+...++..+.++|+|||+|+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3221 11 14467899999999999999988654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=96.59 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=78.9
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ER 446 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~ 446 (796)
+..+.+.++ ++.+|||||||+|.++..|+.. .|+++|+++..+..|+ +.+...++. +.+...|. ..
T Consensus 6 L~~l~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~ 78 (225)
T 3kr9_A 6 LELVASFVS------QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAA 78 (225)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhh
Confidence 344555554 3679999999999999999875 6999999999998887 556667764 56666664 44
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.. ..||+|+... +.- .-...+|.+....|+|+|+|+++.
T Consensus 79 l~~~-~~~D~IviaG--~Gg-~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 79 FEET-DQVSVITIAG--MGG-RLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CCGG-GCCCEEEEEE--ECH-HHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred cccC-cCCCEEEEcC--CCh-HHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4422 2699988754 221 124678888999999999999973
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=98.93 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
..+.+|||||||+|.++..+.. ..|+++|+++.++..++ +++...+++..+.+.|....|++ ++||+|++... +|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar-~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~-lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVIT-PFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKL-LPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHH-HHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESC-HHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeecccCCCC-CCcchHHHHHH-HHH
Confidence 3578999999999999998774 48999999999998887 44556678888888888777766 48999999863 443
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEE
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.. .....+ .+...|+|+|.|+-
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVs 204 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEE
Confidence 32 334444 88899999998883
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=108.58 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCC-CCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF-PGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPf-pd~SFDlVvss~ 461 (796)
++.+|||+|||+|..+..|+.. .|+++|+++.++..++ +.+...|+. +.+...|...++. .+++||+|++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~-~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLH-ANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 5789999999999999988763 6999999999998887 444455664 5566677776653 457899999831
Q ss_pred -C----Ccccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 462 -C----RVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 462 -~----~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
| .+..+++ ...+|.++.++|||||+|++++....
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 1 1111111 13678999999999999999865443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=98.49 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||||||+|-++..++.. .|+++|+++.++..++ .++...|+...+.+.|...-+ +...||+|+++.. +
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt-i 208 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT-L 208 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC-H
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH-H
Confidence 3779999999999999888654 8999999999998887 555566888777777764433 4578999999873 4
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEE
Q 003776 465 PWHIEG--GKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 465 ~w~~d~--~~~L~Ei~RVLKPGG~fv~ 489 (796)
|...+. ...+ ++...|+|+|.|+-
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 433222 3444 99999999999984
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=101.44 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHHhh---------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFD---------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~---------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.+.+|||+|||+|.++..+++ ..++|+|+++.++..|+.... ..++.+.+...+... +.+...||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEEE
Confidence 467999999999999887753 358999999999888875444 446666777777544 334578999999
Q ss_pred cCCCcccccc-----------------h-HHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIE-----------------G-GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d-----------------~-~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.. +.+... . ..+|..+.+.|||||++++..+
T Consensus 208 NPP-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCC-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 864 222111 1 2578999999999999998754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=100.89 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=59.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LP 448 (796)
..++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++.... ..+. .+.+...|...++
T Consensus 29 ~i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 29 GILDKIIYAAKI----KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSC
T ss_pred HHHHHHHHhcCC----CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCC
Confidence 345555555442 35789999999999999999875 79999999999988874443 3444 3566677777777
Q ss_pred CCCCceeEEEEcCC
Q 003776 449 FPGIVFDAVHCARC 462 (796)
Q Consensus 449 fpd~SFDlVvss~~ 462 (796)
++ +||+|+++..
T Consensus 104 ~~--~~D~Vv~n~p 115 (299)
T 2h1r_A 104 FP--KFDVCTANIP 115 (299)
T ss_dssp CC--CCSEEEEECC
T ss_pred cc--cCCEEEEcCC
Confidence 64 7999999753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=103.82 Aligned_cols=96 Identities=22% Similarity=0.190 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++.+|||+|||+|.++..|++. .|+++|+++.++..|+ +.+...++.+.+...++..++.. .||+|++....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~-~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr--- 363 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMAR-RNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPR--- 363 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCT---
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCc---
Confidence 4679999999999999999875 7999999999998887 44555566667777887666432 89999997531
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..-...++..+ +.|+|||.++++.
T Consensus 364 ~g~~~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 364 AGLHPRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp TCSCHHHHHHH-HHHCCSEEEEEES
T ss_pred cchHHHHHHHH-HhcCCCcEEEEEC
Confidence 11123455555 4599999999883
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-07 Score=98.56 Aligned_cols=113 Identities=10% Similarity=0.063 Sum_probs=82.1
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~ 439 (796)
.|..+...-...+.+.+. ++.+|||+|||+|.++..++.+ .|+++|++|..+..++ +.++..++. +..
T Consensus 107 ~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~-~N~~~N~v~~~v~~ 179 (278)
T 3k6r_A 107 MFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMSA 179 (278)
T ss_dssp CCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEE
T ss_pred EEcCCcHHHHHHHHHhcC------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEE
Confidence 344444333445555543 4889999999999999888753 7999999998887776 556666764 456
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+..|...++. .+.||.|+++. .+ ....+|..+.++|||||.+.+.
T Consensus 180 ~~~D~~~~~~-~~~~D~Vi~~~--p~---~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 180 YNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp ECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred EeCcHHHhcc-ccCCCEEEECC--CC---cHHHHHHHHHHHcCCCCEEEEE
Confidence 6677766653 47899999875 22 3346788889999999998764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-07 Score=102.14 Aligned_cols=108 Identities=21% Similarity=0.180 Sum_probs=78.1
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC---
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER--- 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~--- 446 (796)
.++.+.+.+.. .++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+ +.+...++. +.+...+...
T Consensus 274 l~~~~~~~l~~----~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 274 MVARALEWLDV----QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHTC----CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCS
T ss_pred HHHHHHHhhcC----CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEECCHHHHhh
Confidence 34444444432 34679999999999999999875 8999999999998887 455556664 6777777654
Q ss_pred -CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 -LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 -LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+|+++++||+|+++..... ...++..+. .++|++.++++
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAG----AAGVMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTC----CHHHHHHHH-HHCCSEEEEEE
T ss_pred hhhhhcCCCCEEEECCCCcc----HHHHHHHHH-hcCCCeEEEEE
Confidence 4566788999999763221 224555554 47999999987
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=106.42 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC-CCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP-FPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP-fpd~SFDlVvss 460 (796)
.++.+|||+|||+|..+..|+.+ .|+++|+++.++..++ +.+...|+. +.+...|...++ +.+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~-~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS-ENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHH-HHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 35789999999999998888753 6999999999988877 445556665 445556655554 335789999974
Q ss_pred C-C----Ccccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 461 R-C----RVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 461 ~-~----~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
. | .+..+++ ...+|.++.++|||||+|++++....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 3 1 1111111 12678999999999999999865443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.9e-07 Score=100.40 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=81.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----------------CCeEEEeCChhhHHHHHHHHHHHcC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------------RGVLTMSFAPKDEHEAQVQFALERG 434 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvDiSp~dl~~A~~q~A~erg 434 (796)
..++.|.+.+.. ..+.+|||.|||+|.++..+++ ..++|+|+++.++..|+.... .+|
T Consensus 158 ~v~~~mv~~l~~----~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g 232 (445)
T 2okc_A 158 PLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHG 232 (445)
T ss_dssp HHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhCC----CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhC
Confidence 345566665532 3467999999999998877653 479999999998888874443 355
Q ss_pred C---CeEEEEcCCCCCCCCCCceeEEEEcCCCccccc-c---------------hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 435 I---PAISAVMGTERLPFPGIVFDAVHCARCRVPWHI-E---------------GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 435 l---~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~-d---------------~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ ...+..+|....+.. ..||+|+++..+..... + ...+|..+.++|||||++++..+
T Consensus 233 ~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 233 IGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 5 455677776555544 48999999864332111 1 13788999999999999988754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=97.39 Aligned_cols=91 Identities=12% Similarity=-0.036 Sum_probs=63.4
Q ss_pred CCCCEEEEECC------CCch-hHHHHhh--CCeEEEeCChhhHHHHHHHHHHHcCCCeEE-EEcCCCCCCCCCCceeEE
Q 003776 388 KRTRVVLDVGC------GVAS-FGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAIS-AVMGTERLPFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGC------GtG~-~a~~La~--~~V~gvDiSp~dl~~A~~q~A~ergl~~~~-~v~d~e~LPfpd~SFDlV 457 (796)
+++.+|||||| |+|. +++.+.. ..|+++|+++. + . .+.+ ...|...++++ ++||+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~--~v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------S--DADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------C--SSSEEEESCGGGCCCS-SCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------C--CCEEEEECccccCCcc-CcccEE
Confidence 45789999999 4475 2222222 37999999985 1 1 2456 78888777765 689999
Q ss_pred EEcCCCcccc----c-------chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 458 HCARCRVPWH----I-------EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 458 vss~~~l~w~----~-------d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|+.. .++. . ....+|.++.|+|||||.|++....
T Consensus 128 vsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 128 ISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp EECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred EEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99742 2211 1 1247899999999999999987543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-08 Score=105.16 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=71.2
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
++.+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++.... ....+.+...|...++++.
T Consensus 18 ~~~i~~~~~~----~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 18 LNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHhcCC----CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc
Confidence 4556666543 35679999999999999999874 89999999988766542222 1123566677888888874
Q ss_pred -CceeEEEEcCCCccccc-------------chHHHH----HHHHhhcCCCcEEEE
Q 003776 452 -IVFDAVHCARCRVPWHI-------------EGGKLL----LELNRVLRPGGFFIW 489 (796)
Q Consensus 452 -~SFDlVvss~~~l~w~~-------------d~~~~L----~Ei~RVLKPGG~fv~ 489 (796)
++| .|+++.. ++. ....+| ..+.|+|+|||.|++
T Consensus 92 ~~~f-~vv~n~P---y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 92 KQRY-KIVGNIP---YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp SSEE-EEEEECC---SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred CCCc-EEEEeCC---ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 689 7777642 222 112223 447778888876654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7e-07 Score=98.36 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=76.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
...+.+.+.+.. ....+|||+|||+|.++..+++ ..|+|+|+++.++..| ..+.+...|...
T Consensus 26 ~l~~~~~~~~~~----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~ 92 (421)
T 2ih2_A 26 EVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLL 92 (421)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGG
T ss_pred HHHHHHHHhhcc----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhh
Confidence 445666666653 2356999999999999998885 3799999999876444 235666777655
Q ss_pred CCCCCCceeEEEEcCCCccccc---------ch-------------------HHHHHHHHhhcCCCcEEEEEeCC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHI---------EG-------------------GKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~---------d~-------------------~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.+ +.+.||+|+++..+..... +. ..+|..+.++|+|||++++..+.
T Consensus 93 ~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 93 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 54 3468999999753322111 10 15688899999999999987553
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=94.00 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=67.2
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..++ ....+.+..+|...+++
T Consensus 37 ~i~~~Iv~~l~~----~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 37 NFVNKAVESANL----TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHhcCC----CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCc
Confidence 455666666653 35789999999999999999874 89999999999988875554 23356788889888898
Q ss_pred CCCceeEEEEcC
Q 003776 450 PGIVFDAVHCAR 461 (796)
Q Consensus 450 pd~SFDlVvss~ 461 (796)
++.+||+|+++.
T Consensus 111 ~~~~fD~Iv~Nl 122 (295)
T 3gru_A 111 NKLDFNKVVANL 122 (295)
T ss_dssp GGSCCSEEEEEC
T ss_pred ccCCccEEEEeC
Confidence 888899999885
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-05 Score=86.16 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=63.9
Q ss_pred CCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCe--EEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~--~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
..+||.|+.+.|.++..|+...++.+.-|- .-+.+..+.+...++.. .......+.+| ..||+|+.-. +-.
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~~~~~~~ds~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~l---pk~ 111 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEHKPYSIGDSY-ISELATRENLRLNGIDESSVKFLDSTADYP---QQPGVVLIKV---PKT 111 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGGCCEEEESCH-HHHHHHHHHHHHTTCCGGGSEEEETTSCCC---SSCSEEEEEC---CSC
T ss_pred CCCEEEECCCCCHHHHhhccCCceEEEhHH-HHHHHHHHHHHHcCCCccceEecccccccc---cCCCEEEEEc---CCC
Confidence 468999999999999999877887774333 33344445555666653 12222223333 5799998743 323
Q ss_pred c-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 468 I-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 468 ~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. .....|..+...|+||+.+++..
T Consensus 112 ~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 112 LALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp HHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 2 45678888999999999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.6e-07 Score=92.65 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
.+++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..... ...+.+..+|...+++
T Consensus 17 ~~~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 17 HNIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhCCC----CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCc
Confidence 455666666543 35789999999999999999875 899999999988777643321 1346677788888888
Q ss_pred CC-CceeEEEEcC
Q 003776 450 PG-IVFDAVHCAR 461 (796)
Q Consensus 450 pd-~SFDlVvss~ 461 (796)
++ ..| .|+++.
T Consensus 91 ~~~~~~-~vv~nl 102 (244)
T 1qam_A 91 PKNQSY-KIFGNI 102 (244)
T ss_dssp CSSCCC-EEEEEC
T ss_pred ccCCCe-EEEEeC
Confidence 74 456 566664
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=95.83 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC-C-CCC-------------
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-P-FPG------------- 451 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L-P-fpd------------- 451 (796)
+.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...++..+ + +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~-~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ-YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHH-HHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 568999999999999999875 7999999999998887 455566664 56666665433 1 111
Q ss_pred -CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 452 -IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 452 -~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..||+|++.... ..+..++.++|+|+|.+++...
T Consensus 293 ~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 293 SYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEES
T ss_pred cCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEEC
Confidence 379999986421 1245667788889998887643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-06 Score=92.70 Aligned_cols=112 Identities=14% Similarity=-0.024 Sum_probs=79.2
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh------------------------------------------C
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD------------------------------------------R 410 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~------------------------------------------~ 410 (796)
....|...... .++.+|||+|||+|.++..++. .
T Consensus 183 lAa~ll~~~~~----~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 183 LAAGLIYLTPW----KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHTSCC----CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHhhCC----CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 34444444432 3468999999999998877653 2
Q ss_pred CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCcccc---cchHHHHHHHHhhcCC--
Q 003776 411 GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWH---IEGGKLLLELNRVLRP-- 483 (796)
Q Consensus 411 ~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~---~d~~~~L~Ei~RVLKP-- 483 (796)
.|+|+|+++.++..|+ +.+...|+. +.+...|...++.+ .+||+|+++..+..-. .+...++.++.++||+
T Consensus 259 ~V~GvDid~~ai~~Ar-~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 259 KIYGYDIDEESIDIAR-ENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp CEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred eEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 5999999999999887 555556663 67788888888765 5899999986422111 1345677778888887
Q ss_pred CcEEEEE
Q 003776 484 GGFFIWS 490 (796)
Q Consensus 484 GG~fv~s 490 (796)
||.+++.
T Consensus 337 g~~~~ii 343 (385)
T 3ldu_A 337 NWSYYLI 343 (385)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 7776654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-06 Score=88.85 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=74.8
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
|...+..-+..|.+.. .+ .++.+|||||||+|.|+.+++.+ .|.++++.. ++....+.. ...+..+..+.
T Consensus 55 YrSRaA~KL~ei~ek~-~l---~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~ 128 (277)
T 3evf_A 55 AVSRGTAKLRWFHERG-YV---KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFK 128 (277)
T ss_dssp CSSTHHHHHHHHHHTT-SS---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEE
T ss_pred ccccHHHHHHHHHHhC-CC---CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEe
Confidence 4444444455555552 22 35679999999999999988764 567788773 221000000 00122344555
Q ss_pred cCCCCCCCCCCceeEEEEcCCCcc----cccch--HHHHHHHHhhcCCC-cEEEEEeCC
Q 003776 442 MGTERLPFPGIVFDAVHCARCRVP----WHIEG--GKLLLELNRVLRPG-GFFIWSATP 493 (796)
Q Consensus 442 ~d~e~LPfpd~SFDlVvss~~~l~----w~~d~--~~~L~Ei~RVLKPG-G~fv~s~~~ 493 (796)
.+++...++.+.||+|+|..+ .+ |.... ..+|..+.++|||| |.|++-+.-
T Consensus 129 ~~~dv~~l~~~~~DlVlsD~a-pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 129 DKTDIHRLEPVKCDTLLCDIG-ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSCCTTTSCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccceehhcCCCCccEEEecCc-cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 555556777889999999762 22 22111 13568889999999 999987554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=94.56 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchhHHHHhhC---------------------CeEEEeCChhhHHHHHH-------HHHHHcC--CCeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---------------------GVLTMSFAPKDEHEAQV-------QFALERG--IPAIS 439 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---------------------~V~gvDiSp~dl~~A~~-------q~A~erg--l~~~~ 439 (796)
..+|+|+||++|..+..+... .|..-|+...|.+.-.. ......| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999877766431 34556766444432211 1112223 22334
Q ss_pred EEcC---CCCCCCCCCceeEEEEcCCCcccccchHH------------------------H---------------HHHH
Q 003776 440 AVMG---TERLPFPGIVFDAVHCARCRVPWHIEGGK------------------------L---------------LLEL 477 (796)
Q Consensus 440 ~v~d---~e~LPfpd~SFDlVvss~~~l~w~~d~~~------------------------~---------------L~Ei 477 (796)
..+. .-...||+++||+|+|+.+ +||..+.+. + |+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2345689999999999986 999764321 1 5556
Q ss_pred HhhcCCCcEEEEEeCCCCCCc--h-----HHHHHHHHH
Q 003776 478 NRVLRPGGFFIWSATPVYQKL--P-----EDVEIWNAM 508 (796)
Q Consensus 478 ~RVLKPGG~fv~s~~~~~~~l--~-----El~~~~~~l 508 (796)
.|.|+|||+|+++ ..+.... . .+..+|..+
T Consensus 212 a~eL~pGG~mvl~-~~gr~~~~~~~~~~~~l~~al~~l 248 (384)
T 2efj_A 212 SEELISRGRMLLT-FICKEDEFDHPNSMDLLEMSINDL 248 (384)
T ss_dssp HHHEEEEEEEEEE-EECCCTTTCCCCHHHHHHHHHHHH
T ss_pred HHHhccCCeEEEE-EecCCCcccCcccHHHHHHHHHHH
Confidence 8999999999988 4444443 2 556666654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=96.72 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhh-------------------CCeEEEeCChhhHHHHHHHHHHH------------c--CC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-------------------RGVLTMSFAPKDEHEAQVQFALE------------R--GI 435 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-------------------~~V~gvDiSp~dl~~A~~q~A~e------------r--gl 435 (796)
...+|+|+|||+|..+..+.. .+|..-|+...|.+.-....... . +.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 357899999999988877622 15667788777764433222210 0 01
Q ss_pred CeEEEEcC-CCCCCCCCCceeEEEEcCCCcccccch--------------------------------------HHHHHH
Q 003776 436 PAISAVMG-TERLPFPGIVFDAVHCARCRVPWHIEG--------------------------------------GKLLLE 476 (796)
Q Consensus 436 ~~~~~v~d-~e~LPfpd~SFDlVvss~~~l~w~~d~--------------------------------------~~~L~E 476 (796)
.....+.+ .-.-.||+++||+|+|+.+ +||..+. ..+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333 2334589999999999986 9997622 346888
Q ss_pred HHhhcCCCcEEEEEe
Q 003776 477 LNRVLRPGGFFIWSA 491 (796)
Q Consensus 477 i~RVLKPGG~fv~s~ 491 (796)
.+|.|+|||+|+++.
T Consensus 211 ra~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEE
Confidence 899999999999884
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-06 Score=92.28 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhh--C----------------------------------------CeEEEeCChhhHHHHH
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R----------------------------------------GVLTMSFAPKDEHEAQ 426 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~gvDiSp~dl~~A~ 426 (796)
++..|||++||+|.++..++. . .|+|+|+++.++..|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 467999999999998776653 1 3999999999999887
Q ss_pred HHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCcccc---cchHHHHHHHHhhcCC--CcEEEEE
Q 003776 427 VQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWH---IEGGKLLLELNRVLRP--GGFFIWS 490 (796)
Q Consensus 427 ~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~---~d~~~~L~Ei~RVLKP--GG~fv~s 490 (796)
+.+...|+. +.+...|...++.+ .+||+|+++..+.... .+...++.++.++||+ ||.+++.
T Consensus 281 -~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 281 -QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL 349 (393)
T ss_dssp -HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred -HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 555666764 67888888888765 4899999986321111 1334566777777776 8877654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.5e-06 Score=88.26 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=62.1
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..... ...+.+..+|+..+++
T Consensus 16 ~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 16 FVLQKIVSAIHP----QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCG
T ss_pred HHHHHHHHhcCC----CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCH
Confidence 345556665543 35789999999999999999886 899999999998887644432 3356788888888876
Q ss_pred CC----CceeEEEEcC
Q 003776 450 PG----IVFDAVHCAR 461 (796)
Q Consensus 450 pd----~SFDlVvss~ 461 (796)
++ ..|| |+++.
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 53 5688 77764
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.4e-06 Score=88.34 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=66.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.|.+.+.. .++ +|||||||+|.++..|+++ .|+++|+++.++..++.... +..+.+..+|...+++
T Consensus 34 ~i~~~Iv~~~~~----~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 34 AHLRRIVEAARP----FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHCC----CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHhcCC----CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCCh
Confidence 445566665543 346 9999999999999999886 89999999999887764433 2356778888888887
Q ss_pred CCC-ceeEEEEcCCCcccccchHH
Q 003776 450 PGI-VFDAVHCARCRVPWHIEGGK 472 (796)
Q Consensus 450 pd~-SFDlVvss~~~l~w~~d~~~ 472 (796)
++. .||.|+++. +++...+.
T Consensus 106 ~~~~~~~~iv~Nl---Py~iss~i 126 (271)
T 3fut_A 106 EEVPQGSLLVANL---PYHIATPL 126 (271)
T ss_dssp GGSCTTEEEEEEE---CSSCCHHH
T ss_pred hhccCccEEEecC---cccccHHH
Confidence 643 689999985 45554433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=88.61 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCchhHHHHhh--C----------------------------------------CeEEEeCChhhHHHHH
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R----------------------------------------GVLTMSFAPKDEHEAQ 426 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~gvDiSp~dl~~A~ 426 (796)
++..|||.+||+|.++..++. . .|+|+|+++.++..|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 468999999999998876653 1 3999999999999887
Q ss_pred HHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCcccc---cchHHHHHHHHhhcCC--CcEEEEE
Q 003776 427 VQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWH---IEGGKLLLELNRVLRP--GGFFIWS 490 (796)
Q Consensus 427 ~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~---~d~~~~L~Ei~RVLKP--GG~fv~s 490 (796)
+.+...|+. +.+...|...++.+ .+||+|+++..+-.-. .+...++.++.++||+ ||.+++.
T Consensus 274 -~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 274 -KNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp -HHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred -HHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 556667764 67788888888776 4899999985311111 2345677778888877 8877765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=90.29 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=68.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCcccccccccc-cccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADH-LFSKIK 719 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~-~~s~~~ 719 (796)
-..|||+|||.|.++..|..... +|+-+|-. ..+..+-++ ++--+..|.. .++. +.+||+|.+.. +|..+.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCCC-SCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCCc-cCCcCEEEEcCchhhhcC
Confidence 46799999999999999988743 34444543 455555555 2222223433 3443 78999999887 777655
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..-.+..+|-++-|+|||||+++|.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4445667899999999999999995
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-06 Score=86.20 Aligned_cols=131 Identities=14% Similarity=0.215 Sum_probs=88.2
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhccccccccccccc---CCCC-ccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESF---STYP-RTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f---~typ-rtyDl~Ha~~~~s~~ 718 (796)
-..|||+|||.|.++.+|..... +|+-+|-. ..+..+-+++.+.+.+.-...+ +..+ .+||+|.+.++|.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh--
Confidence 37899999999999999988754 34444444 5667777776443332212222 3334 4599999988877
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH--------------------------------HHHHHHHHHHhcCCceEEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV--------------------------------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~--------------------------------~~~~~~~~~~~~l~W~~~~ 766 (796)
......+|-++-|+|+|||++++.+.. -....+..+++.--+++.-
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 245668899999999999999996420 1457788888888888764
Q ss_pred eec-c------CCceEEEEEec
Q 003776 767 TYS-K------DKEGLLCVEKS 781 (796)
Q Consensus 767 ~~~-~------~~e~~l~~~K~ 781 (796)
... . ...-+++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEEC
T ss_pred EecCCCCCCCCceeEEEEeecC
Confidence 321 1 12356677764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=86.24 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=65.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---cc-cccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---FG-IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
.|||+|||.|.++..|...+- ..|+-+|.. ..+..+-++ |+ +- +..|. +.++.-+.+||+|.+.++|.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNIPIEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT-TBCSSCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH-HHCCCCcccccEEEECchHh
Confidence 899999999999999987632 234444443 455554444 33 22 23333 23343348999999988877
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+. ....+|-++-|+|||||++++.+
T Consensus 123 ~~~---~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 123 FWE---DVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence 663 45678999999999999999963
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=6.7e-06 Score=90.90 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=66.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-cccc-cccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-FGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.|+.+|..... .|+-+|.. ..+..+-+ .|+ +-++ .|... ++.-+.+||+|-++..|..
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~-~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE-ALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT-TSCTTCCEEEEEECCCCCT
T ss_pred CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh-ccccCCCeEEEEECCchhh
Confidence 4799999999999999987754 33334433 33332222 232 2222 23322 2221369999998877754
Q ss_pred ccC--CcchHHHHHhhcccccCCcEEEEeccH--HHHHHHHHHHh
Q 003776 718 IKK--RCNLVAVVAEVDRILRPEGKLIVRDDV--ETINELESMVK 758 (796)
Q Consensus 718 ~~~--rC~~~~~l~E~DRiLRP~G~~i~rd~~--~~~~~~~~~~~ 758 (796)
... .-.+..+|-++-|+|+|||.++|.-+. .+-..++....
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 221 223457889999999999999996433 23444444443
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.4e-06 Score=80.71 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=87.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.-..|||+|||.|.++.+|.... . +|+-+|-. ..+..+-++. +--+..| ++.-+.+||+|.+..+|..+.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA-T--KLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE-E--EEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhccc
Confidence 45679999999999999998764 1 56666654 5666666651 2222233 333347999999988887664
Q ss_pred CCcchHHHHHhhcccccCCcEEEEeccH-------------HHHHHHHHHHhcCCceEEEee-ccCCceEEEEEecccC
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVRDDV-------------ETINELESMVKGMQWEVRMTY-SKDKEGLLCVEKSMWR 784 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~rd~~-------------~~~~~~~~~~~~l~W~~~~~~-~~~~e~~l~~~K~~w~ 784 (796)
....+|-++-|+|+|||++++.+-. -....++.+++ .|++.... .....-.+++.|+==+
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~ 163 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSE 163 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCC
Confidence 4567899999999999999996321 12456667766 77765432 2234456777665433
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.7e-06 Score=94.89 Aligned_cols=115 Identities=17% Similarity=0.025 Sum_probs=78.4
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----------------------CCeEEEeCChhhHHHHHHHHH
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----------------------RGVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~gvDiSp~dl~~A~~q~A 430 (796)
.++.|.+.+.. ..+.+|||.+||+|.|+..+++ ..++|+|+++.++..|+....
T Consensus 157 iv~~mv~~l~p----~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 157 LIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 44555555432 3467999999999998876643 269999999998887775443
Q ss_pred HHcCCC------eEEEEcCCCCCC-CCCCceeEEEEcCCCccccc------------c-hHHHHHHHHhhcCCCcEEEEE
Q 003776 431 LERGIP------AISAVMGTERLP-FPGIVFDAVHCARCRVPWHI------------E-GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 431 ~ergl~------~~~~v~d~e~LP-fpd~SFDlVvss~~~l~w~~------------d-~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .++. ..+...|....+ .+...||+|+++..+..... + ...+|..+.+.|||||++++.
T Consensus 233 l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 233 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 3 4544 445666654332 34568999999864222110 1 136888899999999999987
Q ss_pred eC
Q 003776 491 AT 492 (796)
Q Consensus 491 ~~ 492 (796)
.+
T Consensus 312 ~p 313 (541)
T 2ar0_A 312 VP 313 (541)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=83.74 Aligned_cols=105 Identities=8% Similarity=-0.019 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCC---CceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPG---IVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd---~SFDlVv 458 (796)
.++.+|||+|||+|..+..|+. ..|+++|+++.++..++ +.+...|+. +.+...|...++... ..||.|+
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 3578999999999999988876 26999999999988887 445556664 566677766665332 5799999
Q ss_pred EcC-----CCccccc-----------ch-------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 CAR-----CRVPWHI-----------EG-------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 ss~-----~~l~w~~-----------d~-------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+.. ..+.-++ +. ..+|..+.++|+ ||+|++++...
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 731 1121111 11 245677777887 99999886544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-06 Score=84.97 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=74.4
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cc-cccccccccCCCCcccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FG-IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
-.+|||+|||.|.++..|..... +|+-+|.. ..+..+-+ +|+ +- +..|.. .++. +.+||+|.+.++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchh
Confidence 45899999999999999887643 33333433 33333322 333 21 223433 2443 7899999988877
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEecc--------------HHHHHHHHHHHhcCCceEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDD--------------VETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~--------------~~~~~~~~~~~~~l~W~~~~~ 767 (796)
.... .-.+..+|-++-|+|+|||++++-+. .-....++++... |++...
T Consensus 108 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 108 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 6543 22456789999999999999877421 0134566777766 877653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-06 Score=82.83 Aligned_cols=133 Identities=16% Similarity=0.250 Sum_probs=86.8
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh---cccccccccccccCCCCccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER---GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR---Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.-..|||+|||.|.++..|..... +|+-+|.. ..+..+-++ ++--+..|... ++. +.+||+|.+.++|..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FEV-PTSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CCC-CSCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cCC-CCCeEEEEECcchhcC
Confidence 456799999999999999987643 34444443 445555444 22222333322 332 3899999998887655
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH----H---------------------------HHHHHHHHHhcCCceEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV----E---------------------------TINELESMVKGMQWEVRMT 767 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~----~---------------------------~~~~~~~~~~~l~W~~~~~ 767 (796)
... ....+|-++-|+|||||++++.+.. . ....++.+++..-+++...
T Consensus 120 ~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 120 TDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 322 1133799999999999999997311 1 1356778888888887766
Q ss_pred eccCCceEEEEEec
Q 003776 768 YSKDKEGLLCVEKS 781 (796)
Q Consensus 768 ~~~~~e~~l~~~K~ 781 (796)
...+-.-++.++|+
T Consensus 199 ~~~~~~w~~~~~~~ 212 (220)
T 3hnr_A 199 RLNHFVWVMEATKQ 212 (220)
T ss_dssp ECSSSEEEEEEEEC
T ss_pred eccceEEEEeehhh
Confidence 44445556666664
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.9e-06 Score=80.94 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=81.6
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccccccCCc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
.-..|||+|||.|.++..|. ..|..+-+.|. .+.+ +..|. +.++.-+.+||+|.+..+|. + -
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~~~~--------~~~d~-~~~~~~~~~fD~v~~~~~l~-~---~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL----DPRV--------TVCDM-AQVPLEDESVDVAVFCLSLM-G---T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS----STTE--------EESCT-TSCSCCTTCEEEEEEESCCC-S---S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC----CceE--------EEecc-ccCCCCCCCEeEEEEehhcc-c---c
Confidence 34579999999999998884 45555444433 1111 11222 22333357999999988874 2 3
Q ss_pred chHHHHHhhcccccCCcEEEEeccHH---HHHHHHHHHhcCCceEEEeecc-CCceEEEEEec
Q 003776 723 NLVAVVAEVDRILRPEGKLIVRDDVE---TINELESMVKGMQWEVRMTYSK-DKEGLLCVEKS 781 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~rd~~~---~~~~~~~~~~~l~W~~~~~~~~-~~e~~l~~~K~ 781 (796)
....+|-++-|+|+|||++++.+... ....+..++...-+++...... ..-.+++++|.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 46788999999999999999976443 4577888888888887654322 23467888886
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-06 Score=91.01 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=65.4
Q ss_pred cccccccCccccceeeecc-CCCeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMK-DISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~-~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-..|||+|||.|+++.+|. ..+. .|+-+|-. ..+..+-+| |+..-..-.+..+..+|.+||+|++.++|..
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 3579999999999998887 3344 33334433 555555544 4322222122223334589999999988876
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+.. -....+|-++-|+|||||.+++.+
T Consensus 142 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 532 345678999999999999999853
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.5e-07 Score=92.83 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=60.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCCcc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~ 723 (796)
..|||+|||.|.++..|..+--= |+-+|.. ..|..+-.+.=|-..+.=.+.++.-+.+||+|.+..+| .|. .
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~---~ 113 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF---D 113 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC---C
T ss_pred CCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHh---h
Confidence 46999999999999999876432 2333322 23332222221222222224455445899999998887 443 4
Q ss_pred hHHHHHhhcccccCCcEEEEe
Q 003776 724 LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~r 744 (796)
...+|-|+-|||||||.|++-
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 667899999999999999873
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=87.91 Aligned_cols=93 Identities=19% Similarity=0.405 Sum_probs=64.4
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh---cccccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER---GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR---Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
..|||+|||.|.++..|....- +|+-+|.. ..+..+-++ ++--+..|..+.+ .+.+||+|++.++|....
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGCS-
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhhc-
Confidence 3599999999999999987632 33333433 444444444 3222233433332 368999999999887664
Q ss_pred CcchHHHHHhhc-ccccCCcEEEEec
Q 003776 721 RCNLVAVVAEVD-RILRPEGKLIVRD 745 (796)
Q Consensus 721 rC~~~~~l~E~D-RiLRP~G~~i~rd 745 (796)
....+|-|+- |+|||||++++..
T Consensus 118 --~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 --DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3467899999 9999999999964
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-06 Score=84.05 Aligned_cols=112 Identities=18% Similarity=0.341 Sum_probs=75.4
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccc---cccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||.|.++.+|...+. ..|+-+|.. ..+..+-++ |+-. +..|+ ++..+.+||+|.++.++.
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSL---LADVDGKFDLIVANILAE 136 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST---TTTCCSCEEEEEEESCHH
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc---cccCCCCceEEEECCcHH
Confidence 5799999999999999887653 133334433 344444433 4322 22233 233358999999876654
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
. +..+|-++-|+|||||++++.+ .......+..++....++....
T Consensus 137 ~------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 137 I------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp H------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred H------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 2 4678999999999999999974 3335667778887777877554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-06 Score=89.19 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=66.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhccccccccccc---ccCCCCcccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCE---SFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce---~f~typrtyDl~Ha~~~~s~~~ 719 (796)
-..|||+|||.|.|+.+|..... +|+-+|-. ..+..+-+| +--+..|... +|+ +.+||+|.+.++|....
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~--~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLP--DKYLDGVMISHFVEHLD 115 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSC--TTCBSEEEEESCGGGSC
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcC--CCCeeEEEECCchhhCC
Confidence 46799999999999998877543 23334443 566666666 2222223322 333 48999999988887654
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.-.+..+|-++-|+|+|||++++.
T Consensus 116 -~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 116 -PERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp -GGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred -cHHHHHHHHHHHHHcCCCcEEEEE
Confidence 334577899999999999999996
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-06 Score=92.03 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC--------------------CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEc--C-C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--------------------GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVM--G-T 444 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~--d-~ 444 (796)
...+|+|+||++|..+..+... .|..-|+...|.+........- ......+..+ + .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3568999999999766544321 4677888888876654222110 0001223222 2 3
Q ss_pred CCCCCCCCceeEEEEcCCCcccccchH---------------------------------HHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEGG---------------------------------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~~---------------------------------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
-...||+++||+|+|+.+ +||..+.+ .+|+-..+.|+|||+|++..
T Consensus 131 y~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 446789999999999986 99976422 23888899999999999873
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.9e-06 Score=90.77 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=71.8
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc--------------CCC-eEEEEcCCCCCC-C
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER--------------GIP-AISAVMGTERLP-F 449 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er--------------gl~-~~~~v~d~e~LP-f 449 (796)
+.+|||+|||+|.++..++.+ .|+++|+++..+..++....... ++. +.+...|+..+. .
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 679999999999999988764 69999999999888875444431 665 556666653331 1
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....||+|+... . -....+|..+.+.|||||+++++.
T Consensus 128 ~~~~fD~I~lDP--~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP--F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC--C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999753 1 134688899999999999988874
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-06 Score=82.04 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=82.8
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCccccccccccccccccC
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
-..|||+|||.|.|+..|..... .|+-+|.. ..+..+-+|. +--+..|. +.++.-+.+||+|.+.++|..+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~- 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMG- 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCC-
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCC-
Confidence 45799999999999999987643 33444443 4556666653 22222333 23443358999999988877653
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccH----------------HHHHHHHHHHhcCCceEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDV----------------ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~l~W~~~~~ 767 (796)
+-.+..+|-++-|+|+|||++++.... -....+..+++...|++...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 335677899999999999999986421 13677888888888988654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=78.71 Aligned_cols=120 Identities=12% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-c----CCCeEEEEcCC-CCCCCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-R----GIPAISAVMGT-ERLPFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-r----gl~~~~~v~d~-e~LPfpd~SFDlV 457 (796)
+..++||-||.|.|..++.+++. .|+.++|++..+..++.-+..- . ...+...+.|. .-+--..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45789999999999999999875 6999999998887776544321 1 24467777775 4444556889999
Q ss_pred EEcCCCcccc----cchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHH
Q 003776 458 HCARCRVPWH----IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAM 508 (796)
Q Consensus 458 vss~~~l~w~----~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~l 508 (796)
+.-.. -+.. .--..++..++|+|+|||.|+......+-.........+.+
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l 215 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKL 215 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHH
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHH
Confidence 98541 1111 12358999999999999999975433333344444444443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.2e-06 Score=90.34 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=66.5
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-..|||+|||.|.++..|... +. .|+-+|-. ..+..+-+| |+- -+..|+. .++.+||+|.+..
T Consensus 73 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~fD~v~~~~ 145 (302)
T 3hem_A 73 GMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE----EFDEPVDRIVSLG 145 (302)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG----GCCCCCSEEEEES
T ss_pred cCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH----HcCCCccEEEEcc
Confidence 457999999999999998776 53 33444433 555555444 442 2233432 2379999999998
Q ss_pred ccccccCC------cchHHHHHhhcccccCCcEEEEe
Q 003776 714 LFSKIKKR------CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 714 ~~s~~~~r------C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+|....+. -.+..+|-++-|+|||||.++|.
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 182 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 88776432 44578899999999999999986
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=97.91 E-value=6.9e-06 Score=82.00 Aligned_cols=136 Identities=11% Similarity=0.083 Sum_probs=83.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh------------cccccccccccccCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER------------GLFGIYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR------------Glig~~~~~ce~f~typrtyDl~ 709 (796)
.-+.|||+|||.|.|+.+|....- ..+|+-+|-. ..+..+-++ .+-=+..|. ..++..+.+||+|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V 106 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAA 106 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEE
Confidence 346899999999999999987520 0123333333 344444333 222122343 2233334699999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEeccHH--------------------------HHHHHHHHHhcCCce
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE--------------------------TINELESMVKGMQWE 763 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~--------------------------~~~~~~~~~~~l~W~ 763 (796)
.+..+|..+. .-.+..+|-++-|+|||||++|+..... +..-++.++...-++
T Consensus 107 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 107 TVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 9988887663 2234578999999999999888643221 222233777777787
Q ss_pred EEEeec-------cCCceEEEEEec
Q 003776 764 VRMTYS-------KDKEGLLCVEKS 781 (796)
Q Consensus 764 ~~~~~~-------~~~e~~l~~~K~ 781 (796)
+....- ...-+|.|++|.
T Consensus 186 v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 186 VRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEEecCCccccCCCCeEEEEEecc
Confidence 766521 124579999885
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-06 Score=85.18 Aligned_cols=98 Identities=16% Similarity=0.289 Sum_probs=69.6
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccc-cccccccccCCCCcccccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFG-IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..-.+|||+|||.|.++.+|.... .+|+-+|.. ..+..+-++. -|- +..|. +.++ .+.+||+|.+.++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l 124 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVAEVL 124 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEESCG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEccHH
Confidence 345689999999999999998763 355555554 4555555442 122 22333 2333 35899999999888
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+.-.+..+|-++-|+|+|||++++.
T Consensus 125 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 125 YYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 77665555567899999999999999995
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-06 Score=90.05 Aligned_cols=96 Identities=21% Similarity=0.332 Sum_probs=66.0
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-..|||+|||.|.++..|... +. .|+-+|-. ..+..+-+ .|+ |- +..|+ +.+|.-+.+||+|++.
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCSSCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccCCCCCCCEeEEEec
Confidence 4457999999999999988765 43 34444443 44544433 343 22 22333 2344334799999998
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++|..+.. ...+|-++-|+|||||++++.+
T Consensus 158 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHSPD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 88877654 5788999999999999999863
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=88.88 Aligned_cols=97 Identities=14% Similarity=0.015 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCC-C-CCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERL-P-FPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~L-P-fpd~SFDlVv 458 (796)
++.+|||++||+|.++..++.+ .|+++|+++..+..++ +.+...++. +.+...|+..+ . .....||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~-~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK-ENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 4679999999999999988862 5999999998887776 555566764 55566664222 1 1235799999
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. . ..+..++..+.+.|+|||+|+++.
T Consensus 131 lDP--~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 875 1 123568899999999999998874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.3e-06 Score=83.26 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=74.9
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-----------------------------------
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----------------------------------- 687 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----------------------------------- 687 (796)
-..|||+|||.|.++..|..... -.|+-+|-. ..+..+-++-
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 46799999999999988876543 244444443 3333332221
Q ss_pred cc--ccccccccccCCCC---ccccccccccccccccCC-cchHHHHHhhcccccCCcEEEEeccHH-------------
Q 003776 688 LF--GIYHDWCESFSTYP---RTYDLLHADHLFSKIKKR-CNLVAVVAEVDRILRPEGKLIVRDDVE------------- 748 (796)
Q Consensus 688 li--g~~~~~ce~f~typ---rtyDl~Ha~~~~s~~~~r-C~~~~~l~E~DRiLRP~G~~i~rd~~~------------- 748 (796)
-| -+..|.....+..+ .+||+|.+..+|...... -.+..+|-++-|+|||||++|+.+...
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 214 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS 214 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence 02 12233333222223 799999988877643322 235678999999999999999964210
Q ss_pred ---HHHHHHHHHhcCCceEEE
Q 003776 749 ---TINELESMVKGMQWEVRM 766 (796)
Q Consensus 749 ---~~~~~~~~~~~l~W~~~~ 766 (796)
....+..++...-+.+..
T Consensus 215 ~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 215 LPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp CCCCHHHHHHHHHHTTCEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEE
Confidence 234677777766776644
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.5e-05 Score=91.51 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCchhHHHH---hhC-----CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFL---FDR-----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~L---a~~-----~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVv 458 (796)
....|||+|||+|-+.... .++ +|++++-++ +...+. +.....+. .+.++.++++.+..| ..+|+||
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~-~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTL-ENWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHH-HHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHH-HHHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 3457999999999773333 222 689999998 433343 33344444 366777888887766 6799999
Q ss_pred EcC-CCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 459 CAR-CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 459 ss~-~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
|=. .++....-...+|....|.|||||.++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 932 112223334578888899999999987
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=80.87 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=65.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-cc-cccccccccCCCCcccccccccc-cc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FG-IYHDWCESFSTYPRTYDLLHADH-LF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~~ce~f~typrtyDl~Ha~~-~~ 715 (796)
-..|||+|||.|.++..|..... .|+-+|.. ..+..+-++ |+ +- +..|. ..++ ++.+||+|.+.+ +|
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI-SNLN-INRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG-GGCC-CSCCEEEEEECTTGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc-ccCC-ccCCceEEEEcCccc
Confidence 45799999999999999987643 34444443 444444333 21 11 22233 2233 358999999987 88
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..+...-.+..+|-++-|+|+|||++++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 76644345678899999999999999983
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.3e-06 Score=81.97 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=85.7
Q ss_pred ccccccccCccccceeeeccCCC---eEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha 711 (796)
.-..|||+|||.|.++.+|...- . .|+-+|.. ..+..+-++ |+ --+..|. +.++.-+.+||+|.+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~ 112 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKG---KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIPLPDNTVDFIFM 112 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCSSCSSCEEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCCCCCCCeeEEEe
Confidence 34579999999999998886542 2 22223332 344444333 32 1122333 233333478999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEeccH-------------HHHHHHHHHHhcCCceEEEe-eccCCceEEE
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV-------------ETINELESMVKGMQWEVRMT-YSKDKEGLLC 777 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-------------~~~~~~~~~~~~l~W~~~~~-~~~~~e~~l~ 777 (796)
.++|..+. ....+|-++-|+|||||++++.+-. -....+..+++...|+.... .......+++
T Consensus 113 ~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 189 (219)
T 3dh0_A 113 AFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVY 189 (219)
T ss_dssp ESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEE
T ss_pred ehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEE
Confidence 88887664 3567899999999999999996411 13577888888888886543 3334556777
Q ss_pred EEec
Q 003776 778 VEKS 781 (796)
Q Consensus 778 ~~K~ 781 (796)
++|+
T Consensus 190 ~~k~ 193 (219)
T 3dh0_A 190 AMIV 193 (219)
T ss_dssp EECC
T ss_pred EEec
Confidence 7775
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.7e-06 Score=82.08 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=68.7
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-----cccccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-----FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-----ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-..|||+|||.|.++.+|..... +|+-+|.. ..+..+-++ |+ --+..|+.+.++ +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 345799999999999988877632 33333433 344443333 32 223445555444 5789999987
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhc
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKG 759 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~ 759 (796)
..|.. ..-.+..+|-++-|+|+|||++++.... .....+...++.
T Consensus 127 ~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 172 (194)
T 1dus_A 127 PPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD 172 (194)
T ss_dssp CCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred CCccc--chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHH
Confidence 76542 1223567899999999999999996433 233334444433
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=77.26 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=74.6
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCcccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
.-..|||+|||.|.++..|... |- ..|+-+|-. ..+..+-++ |+ +-+..|..+.|+..+.+||+|.+.+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 3457999999999999988765 22 123333433 344444433 43 2333455567776558999999777
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceEE
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEVR 765 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~~ 765 (796)
.+.. ..+|-++-|+|+|||++++... ......+..+.+...+++.
T Consensus 103 ~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 103 GLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp -TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 6643 5678999999999999999753 3455556666655555543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-06 Score=88.96 Aligned_cols=120 Identities=12% Similarity=0.098 Sum_probs=76.8
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
.-..|||+|||.|.++.+|..... -.|+-+|.. ..+..+-++- +--+..|+. .++.-+.+||+|.+.++|.
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HCCCCCCCeEEEEEcchhh
Confidence 456899999999999988876431 123333433 4455555442 211233443 2443347999999988877
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEeccH----------------HHHHHHHHHHhcCCceEEE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDDV----------------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~l~W~~~~ 766 (796)
.+.. -.+..+|-++-|+|||||+++|.+.. -....+..+++..-|++..
T Consensus 170 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 234 (254)
T 1xtp_A 170 YLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEE
Confidence 6532 23567899999999999999997631 0235566666666666543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-06 Score=87.76 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=65.4
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-..|||+|||.|.++..|... +. .|+-+|-. ..+..+-++ |+- -+..|+ +.++.-+.+||+|++.+
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecC
Confidence 347999999999999888765 32 33333433 444444333 432 233444 44554358999999998
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+|... ....+|-++-|+|||||++++.+
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88765 47789999999999999999975
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=84.18 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-C--eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-G--VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-~--V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
..++.|.+.+.. .++.+|||||||+|.++. |... . |+++|+++.++..++..... ...+.+..+|+..++
T Consensus 8 ~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINP----QKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC----CTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC----CCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCC
Confidence 344555555542 356799999999999999 7653 6 99999999988766533221 123567778888877
Q ss_pred CCC-----CceeEEEEcC
Q 003776 449 FPG-----IVFDAVHCAR 461 (796)
Q Consensus 449 fpd-----~SFDlVvss~ 461 (796)
+++ +..|.|+++.
T Consensus 81 ~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHHHTSCEEEEEEC
T ss_pred HHHhhcccCCceEEEECC
Confidence 653 2357888875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-06 Score=87.54 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=66.0
Q ss_pred ccccccccCccccceeeeccCCCe-EEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-..|||+|||.|.++..|...+- -|.-| |-. ..+..+-+| |+- -+..|+ +.++.-+.+||+|++.
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGL---DFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSE 121 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEc
Confidence 346799999999999999988732 33333 332 444444433 432 123344 3444335799999999
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++|... ....+|-++-|+|||||++++.+
T Consensus 122 ~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 122 GAIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp SCGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 888765 46788999999999999999964
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=82.62 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--C----eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--G----VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~----V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e 445 (796)
.+++.|.+.+.. .++.+|||||||+|.++..|+++ . |+++|+++.++..++.. + ...+.+..+|+.
T Consensus 29 ~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~~D~~ 100 (279)
T 3uzu_A 29 GVIDAIVAAIRP----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEESCGG
T ss_pred HHHHHHHHhcCC----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEECChh
Confidence 445556665543 35789999999999999999874 5 99999999999888755 2 334677888888
Q ss_pred CCCCCCC------ceeEEEEcC
Q 003776 446 RLPFPGI------VFDAVHCAR 461 (796)
Q Consensus 446 ~LPfpd~------SFDlVvss~ 461 (796)
.+++++- ....|+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 101 TFDFGSIARPGDEPSLRIIGNL 122 (279)
T ss_dssp GCCGGGGSCSSSSCCEEEEEEC
T ss_pred cCChhHhcccccCCceEEEEcc
Confidence 8877532 234677764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-06 Score=85.49 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=65.6
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cc-cccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++.+|....- .|+-+|.. ..+..+-+ +|+ +- +..|. +.++.-+.+||+|++.++
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEESC
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECCc
Confidence 345799999999999988876532 34444443 34444333 243 22 22333 445543589999999888
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+. ....+|-++-|+|||||++++.+
T Consensus 97 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 97 AHHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77664 46788999999999999999963
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=84.94 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=74.4
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh--ccccc----ccccc-cccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER--GLFGI----YHDWC-ESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~----~~~~c-e~f~typrtyDl~Ha~~~~s 716 (796)
+.|||+|||+|+|+..|...+. -.|+-+|-. .+|...+.+ .++.+ +.... +.++ ..+||++-++..|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence 5799999999999988876642 123333443 667664432 11110 11111 2233 14599999888776
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe---------c-------------cHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR---------D-------------DVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r---------d-------------~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
.+..+|-|+-|+|||||.+++- . ....+.++..++...-|.+...
T Consensus 163 ------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 163 ------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp ------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3577899999999999999873 1 1136777888888899987654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-06 Score=86.29 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++..|....- .|+-+|.. ..+..+-++ |+ --+..|.. .+|.-+.+||+|++..+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDERFHIVTCRIA 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEESC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH-hCCCCCCCEEEEEEhhh
Confidence 456899999999999998876532 44445543 445544333 43 12233432 34432489999998887
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-.+. ....+|-++-|+|||||++++.
T Consensus 113 l~~~~---d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 113 AHHFP---NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHhcC---CHHHHHHHHHHHcCCCCEEEEE
Confidence 76654 4567899999999999999996
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.2e-05 Score=79.68 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=69.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
.+++.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++.. ....+.+..+|+..++
T Consensus 18 ~i~~~iv~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 18 GVLKKIAEELNI----EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCC
T ss_pred HHHHHHHHhcCC----CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCC
Confidence 455666666653 35789999999999999999875 699999999888766532 2334677888888888
Q ss_pred CCCC--ceeEEEEcCCCcccccchHHHHHHHHhh--cCCCcEEEEE
Q 003776 449 FPGI--VFDAVHCARCRVPWHIEGGKLLLELNRV--LRPGGFFIWS 490 (796)
Q Consensus 449 fpd~--SFDlVvss~~~l~w~~d~~~~L~Ei~RV--LKPGG~fv~s 490 (796)
+++. .| .|+++. +++...+ +|..+.+. .-+.+.+++.
T Consensus 90 ~~~~~~~~-~vv~Nl---Py~i~~~-il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 90 FCSLGKEL-KVVGNL---PYNVASL-IIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp GGGSCSSE-EEEEEC---CTTTHHH-HHHHHHHTGGGCSEEEEEEE
T ss_pred hhHccCCc-EEEEEC---chhccHH-HHHHHHhcCCCCceEEEEEe
Confidence 7642 34 666654 4554333 33333322 2344555543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-06 Score=86.34 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=65.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh------cccccccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER------GLFGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR------Glig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++..|..... +|+-+|.. ..+..+-.+ ++--+..|+ +.++.-+.+||+|++.++|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 346799999999999999987743 33344443 455555444 122233344 3344334799999988877
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.... ....+|-++-|+|||||++++.
T Consensus 115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 6554 3577899999999999999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.1e-06 Score=84.04 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=79.8
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-cccccccccccccCCCCccccccccccccccccCC
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR 721 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r 721 (796)
-..|||+|||.|.++..|..... .|+-+|.. ..+..+-.+ ++--+..+.. .++ .+.+||+|.+.++|..+. .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcC-H
Confidence 45799999999999999987744 34444443 455666555 4333334432 344 468999999888776543 2
Q ss_pred cchHHHHHhhcccccCCcEEEEeccH---------------HHHHHHHHHHhcCC-ceEEE
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVRDDV---------------ETINELESMVKGMQ-WEVRM 766 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~rd~~---------------~~~~~~~~~~~~l~-W~~~~ 766 (796)
-.+..+|-++-|+|+|||++++.... -....+..+++..- |++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 24567899999999999999986211 14566777777666 76654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.8e-06 Score=86.11 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=85.8
Q ss_pred cccccccCccccceeeecc--CCCeEEEEeecCCCC-CChhHHHhh----cc---cc-cccccccccCCCCccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMK--DISVWVMNVISIDSP-DTLPIIYER----GL---FG-IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~--~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~~ce~f~typrtyDl~Ha~ 712 (796)
-..|||+|||.|.++.+|. ..+-. +|+-+|-. ..+..+-++ |+ |- +.+|... ++ ++.+||+|.+.
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~ 194 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSN 194 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEEC
Confidence 3569999999999999883 33221 23333333 444444333 33 21 2233333 33 35899999988
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccH---------------------------------------HHHHHH
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV---------------------------------------ETINEL 753 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~---------------------------------------~~~~~~ 753 (796)
+++..+...-....+|-++-|+|||||++++.+.. -....+
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 87776555444456899999999999999987511 136678
Q ss_pred HHHHhcCCceEEEeec--cCCceEEEEEec
Q 003776 754 ESMVKGMQWEVRMTYS--KDKEGLLCVEKS 781 (796)
Q Consensus 754 ~~~~~~l~W~~~~~~~--~~~e~~l~~~K~ 781 (796)
..+++.--+++..... ...-.+++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 8888888888765432 223457888875
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3e-06 Score=88.49 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=67.8
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc-------ccccccccccC---CCCcccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF-------GIYHDWCESFS---TYPRTYD 707 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli-------g~~~~~ce~f~---typrtyD 707 (796)
.-..|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ +.- -+..++. .++ ..+.+||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeE
Confidence 346799999999999999988754 55555654 556555443 111 1122332 222 2347999
Q ss_pred ccccc-cccccccC----CcchHHHHHhhcccccCCcEEEEec
Q 003776 708 LLHAD-HLFSKIKK----RCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 708 l~Ha~-~~~s~~~~----rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+|++. .+|..+.. .-....+|-++-|+|||||++++..
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99987 67765554 3446788999999999999999974
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.5e-06 Score=85.65 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=64.7
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.-..|||+|||.|.|+..|.....- |+-+|.. ..+..+-++ ++--+..|.. .++ ++.+||+|++.++|....
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAE---VLGTDNAATMIEKARQNYPHLHFDVADAR-NFR-VDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCTTSCEEECCTT-TCC-CSSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHhhCCCCEEEECChh-hCC-cCCCcCEEEEcchhhhCc
Confidence 4467999999999999999874432 3333333 445555444 2222233432 344 478999999888776543
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++-|+|||||++++.
T Consensus 132 ---d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 132 ---EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEE
Confidence 4567899999999999999985
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=87.32 Aligned_cols=102 Identities=16% Similarity=-0.009 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchhHHHHhh----------------------------------------------CCeEEEeCChhhH
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----------------------------------------------RGVLTMSFAPKDE 422 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----------------------------------------------~~V~gvDiSp~dl 422 (796)
++.+|||.+||+|.++..++. ..|+|+|+++.++
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 467899999999998765542 2699999999999
Q ss_pred HHHHHHHHHHcCCC--eEEEEcCCCCC--CCCCCceeEEEEcCCCcc-c--ccchHH---HHHHHHhhcCCCcEEEEEe
Q 003776 423 HEAQVQFALERGIP--AISAVMGTERL--PFPGIVFDAVHCARCRVP-W--HIEGGK---LLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 423 ~~A~~q~A~ergl~--~~~~v~d~e~L--Pfpd~SFDlVvss~~~l~-w--~~d~~~---~L~Ei~RVLKPGG~fv~s~ 491 (796)
..|+ ..+...|+. +.+...|...+ |+..+.||+|+++..+-. . ..+... .|.++.+.+.|||.+++.+
T Consensus 270 ~~A~-~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 270 QRAR-TNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHH-HHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHH-HHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 8887 566677876 57777887666 444458999999853211 0 112233 3445556667899888653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5e-06 Score=88.17 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=64.8
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-..|||+|||.|.++..|... +. .|+-+|-. ..+..+-++ |+-....-.+..+..+|.+||+|.+.++|..
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 347999999999999888765 43 33333433 455555544 4422122122233334689999999888765
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
... -....+|-++-|+|+|||.+++.
T Consensus 168 ~~~-~~~~~~l~~~~~~LkpgG~l~~~ 193 (318)
T 2fk8_A 168 FGH-ENYDDFFKRCFNIMPADGRMTVQ 193 (318)
T ss_dssp TCG-GGHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCH-HHHHHHHHHHHHhcCCCcEEEEE
Confidence 432 24567899999999999999985
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-06 Score=87.58 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=62.1
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-..|||+|||.|.++.+|... +. .|+-+|.. ..+..+-+ .|+ |- +..|+. .++. +.+||+|++.+
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA-NEKCDVAACVG 111 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC-SSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCc-CCCCCEEEECC
Confidence 457999999999998888653 32 22333332 34444333 343 11 233443 3343 78999999877
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++-.+. ....+|-++-|+|||||++++.+
T Consensus 112 ~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIAG---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhcC---CHHHHHHHHHHHcCCCeEEEEec
Confidence 765443 35778999999999999999964
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.4e-06 Score=82.98 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=65.4
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccc-cCCCCccccccccccccccccC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCES-FSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~-f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.-.+|||+|||.|.++.+|...+. +|+-+|.. ..+..+-++..--+..|.... .+.-+.+||+|.+.++|..+.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~- 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF- 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS-
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC-
Confidence 456899999999999999988763 44444443 444444444321122333321 222237999999988887654
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++-|+|+|||++++.
T Consensus 108 --~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 108 --DPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp --CHHHHHHHTGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEE
Confidence 3467899999999999999996
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=80.02 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=66.5
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccc---cccccccccCCCCcccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFG---IYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
-..|||+|||.|.++.+|..... .|+-+|-. ..+..+-.+|+.. +..|....+ .+.+||+|.+.++|..+.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWT--PDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCC--CSSCEEEEEEESCGGGSC
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCC--CCCceeEEEEechhhcCC
Confidence 34899999999999999877643 33333433 4555665566322 223333332 257999999988877654
Q ss_pred CCcchHHHHHhhcccccCCcEEEEecc
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
. -.+..+|-++-|+|+|||++++.+.
T Consensus 122 ~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 122 D-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred H-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2 2356789999999999999998743
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.4e-06 Score=86.99 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=63.7
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----ccc---c-cccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GLF---G-IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-..|||+|||.|.++..|... +. +|+-+|.. ..+..+-+| |+- - +..|... ++.-+.+||+|++.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~ 136 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWAL 136 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEe
Confidence 3457999999999999888653 33 33333333 444444333 432 1 2233322 33324799999998
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++|....+ ...+|-++-|+|||||+++|.+
T Consensus 137 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 137 ESLHHMPD---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp SCTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 88876543 4678999999999999999864
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.6e-06 Score=83.31 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=66.1
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-------cccc-cccccccCCCCccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-------FGIY-HDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-------ig~~-~~~ce~f~typrtyDl~H 710 (796)
-..|||+|||.|.++.+|..... +|+-+|-. ..+..+-++ |+ +-++ .|. ..++.-+.+||+|.
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDFAV 106 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeEEE
Confidence 45799999999999999987744 34444433 444444442 22 1121 222 23343357999999
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+|..+.+.-....+|-++-|+|||||++++.+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 98888776554444578999999999999999964
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.7e-05 Score=86.70 Aligned_cols=116 Identities=18% Similarity=0.081 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHh-------------------hCCeEEEeCChhhHHHHHHHHHH
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF-------------------DRGVLTMSFAPKDEHEAQVQFAL 431 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La-------------------~~~V~gvDiSp~dl~~A~~q~A~ 431 (796)
...+++|.+.+.. . ..+|||.+||+|.|...++ ...++|+|+++.++..|+.....
T Consensus 231 ~~Vv~lmv~ll~p----~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l 305 (544)
T 3khk_A 231 KSIVTLIVEMLEP----Y-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI 305 (544)
T ss_dssp HHHHHHHHHHHCC----C-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----C-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH
Confidence 3455666666542 2 3499999999998877653 23689999999988888755443
Q ss_pred HcCCCeEE--EEcCCCCC-CCCCCceeEEEEcCCCcc--cccc--------------------------hHHHHHHHHhh
Q 003776 432 ERGIPAIS--AVMGTERL-PFPGIVFDAVHCARCRVP--WHIE--------------------------GGKLLLELNRV 480 (796)
Q Consensus 432 ergl~~~~--~v~d~e~L-Pfpd~SFDlVvss~~~l~--w~~d--------------------------~~~~L~Ei~RV 480 (796)
.|+...+ ...|.... .++...||+|+++..+.. |..+ .-.+|..+.+.
T Consensus 306 -~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~ 384 (544)
T 3khk_A 306 -RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH 384 (544)
T ss_dssp -TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred -hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence 5554333 34454333 355678999999865432 2110 02578889999
Q ss_pred cCCCcEEEEEeC
Q 003776 481 LRPGGFFIWSAT 492 (796)
Q Consensus 481 LKPGG~fv~s~~ 492 (796)
|||||++++..+
T Consensus 385 Lk~gGr~aiVlP 396 (544)
T 3khk_A 385 LAPTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEEEE
T ss_pred hccCceEEEEec
Confidence 999999887754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.75 E-value=6e-06 Score=86.53 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=53.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCCh-------hhHHHHHHHHHHHcCC--CeEEEEcCCCC-CC-CCC--Cc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAP-------KDEHEAQVQFALERGI--PAISAVMGTER-LP-FPG--IV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp-------~dl~~A~~q~A~ergl--~~~~~v~d~e~-LP-fpd--~S 453 (796)
++.+|||+|||+|.++..|+.. .|+++|+++ .++..++.. +...++ .+.+...+... ++ +++ ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n-~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLN-PETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHS-HHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhH-HHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 4679999999999999999875 899999999 777666532 222232 25667777644 33 444 68
Q ss_pred eeEEEEcCC
Q 003776 454 FDAVHCARC 462 (796)
Q Consensus 454 FDlVvss~~ 462 (796)
||+|++...
T Consensus 162 fD~V~~dP~ 170 (258)
T 2r6z_A 162 PDIVYLDPM 170 (258)
T ss_dssp CSEEEECCC
T ss_pred ccEEEECCC
Confidence 999999863
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.4e-06 Score=81.15 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=63.1
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCccccccccccccccccC
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
-.+|||+|||.|.++..| ... .|+-+|.. ..+..+-++ ++--+..|. +.++.-+.+||+|.+.++|....
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PYP----QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CCS----EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCeEEEECCCCCHhHHhC-CCC----eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhcC-
Confidence 457999999999999888 320 33334443 445555554 222222233 33443347999999988877654
Q ss_pred CcchHHHHHhhcccccCCcEEEEec
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
....+|-++-|+|||||.+++..
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEe
Confidence 46788999999999999999974
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.7e-05 Score=79.49 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=81.0
Q ss_pred ccccccccCccccceeeecc--CCCeEEEEeecCCCC-CChhHHH----hhcc--cccccccccccCC---CCccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMK--DISVWVMNVISIDSP-DTLPIIY----ERGL--FGIYHDWCESFST---YPRTYDLLH 710 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~--~~~vwvmnv~p~~~~-~~l~~i~----eRGl--ig~~~~~ce~f~t---yprtyDl~H 710 (796)
.-..|||+|||.|.++..|. ....- |+-+|.. ..+.++- ..|+ |-+++.=.+.++. ++.+||+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLH---VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 34579999999999887776 33322 3333333 2333332 2354 3333322233432 257899999
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec---cHHHHHHHHHHHhcCCceEEEee---cc---CCceEEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD---DVETINELESMVKGMQWEVRMTY---SK---DKEGLLCVEKS 781 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd---~~~~~~~~~~~~~~l~W~~~~~~---~~---~~e~~l~~~K~ 781 (796)
+..+ ..+..++-++-|+|+|||++++-+ ..+.+..+...++...+...... .. ..-.+++++|.
T Consensus 147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 7663 357788999999999999999864 33455666677777777764321 11 22346777776
Q ss_pred ccCC
Q 003776 782 MWRP 785 (796)
Q Consensus 782 ~w~~ 785 (796)
-..|
T Consensus 220 ~~~~ 223 (240)
T 1xdz_A 220 KNTP 223 (240)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=84.69 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=80.5
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-------CCeEEEeCChhhHHHHHHHHHHHcCCC---eEEEE
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-------RGVLTMSFAPKDEHEAQVQFALERGIP---AISAV 441 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-------~~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v 441 (796)
..+++|.+.+........+.+|||.+||+|.|...+++ ..++|+|+++..+..|+.... -+|+. ..+..
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~-l~gi~~~~~~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI-LHGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH-HTTCCGGGEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH-HcCCCcCccceEe
Confidence 44566666554211123577999999999998776643 269999999988888775544 35652 35566
Q ss_pred cCCCCC--C-CCCCceeEEEEcCCCc-cccc------c---------------hHHHHHHHHhhcC-CCcEEEEEeC
Q 003776 442 MGTERL--P-FPGIVFDAVHCARCRV-PWHI------E---------------GGKLLLELNRVLR-PGGFFIWSAT 492 (796)
Q Consensus 442 ~d~e~L--P-fpd~SFDlVvss~~~l-~w~~------d---------------~~~~L~Ei~RVLK-PGG~fv~s~~ 492 (796)
.|.... | ++...||+|+++..+. .|.. + .-.++..+.+.|+ |||++++..+
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 665444 4 4567899999985432 2210 0 0237888999999 9999987754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.9e-06 Score=84.18 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=63.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----c--cccccccccccCCCC-ccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----L--FGIYHDWCESFSTYP-RTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l--ig~~~~~ce~f~typ-rtyDl~Ha~~~~s 716 (796)
..|||+|||.|.++.+|.+... -+|+-++.+ ..+..+-+++ + .=+..+|..-.+.+| .+||.|..+.+++
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 3599999999999999987643 234444544 5666655543 1 112344433333333 7899997666555
Q ss_pred ccc--CCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIK--KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~--~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
... ..-....+|-|+-|+|||||.|++-
T Consensus 140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 433 2223467889999999999999874
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.2e-06 Score=82.68 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=78.3
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-..|||+|||.|.++.+|..... .|+-+|-. ..+..+-+++ +--+..|. ..++.-+.+||+|.+.++|...
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBT-TBCSSCTTCEEEEEEESCTTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcch-hcCCCCCCCccEEEEcChHhhc
Confidence 34799999999999999987754 33334433 5566666663 21122233 2344335899999998888765
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH----------------------HHHHHHHHHHhcCCceEEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV----------------------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~----------------------~~~~~~~~~~~~l~W~~~~ 766 (796)
. ....+|-++-|+|||||+++|.+.. -....++.++...-+++..
T Consensus 130 ~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 130 E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 3 3457899999999999999996310 1124577777777777654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.9e-06 Score=84.01 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=62.2
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhh-cccccccccccccCCCCccccccccccccccccCC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR 721 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r 721 (796)
.-..|||+|||.|.++..|.+...-|.-|-+.. ..+..+-.+ .+--+..|+ +.++.-+.+||+||+.++|..+
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~--- 107 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGLFVYAVEPSI--VMRQQAVVHPQVEWFTGYA-ENLALPDKSVDGVISILAIHHF--- 107 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH--HHHHSSCCCTTEEEECCCT-TSCCSCTTCBSEEEEESCGGGC---
T ss_pred CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH--HHHHHHHhccCCEEEECch-hhCCCCCCCEeEEEEcchHhhc---
Confidence 456899999999999999987654333332211 222222222 222222333 3455445899999999988766
Q ss_pred cchHHHHHhhcccccCCcEEEEe
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
-....+|-++-|+|| ||++++-
T Consensus 108 ~~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 108 SHLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp SSHHHHHHHHHHHBC-SSCEEEE
T ss_pred cCHHHHHHHHHHHhC-CcEEEEE
Confidence 346788999999999 9988774
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=79.28 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=76.1
Q ss_pred ccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhc--ccccccccccccCC---CCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERG--LFGIYHDWCESFST---YPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRG--lig~~~~~ce~f~t---yprtyDl~Ha 711 (796)
.-..|||+|||.|.++.+|... ..-|.-|=... ..+..+- ..| +-=+..|+..+++. .+.+||+|.+
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSM--DALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 3457999999999999888765 32222222211 1222111 112 22233455555542 2378999998
Q ss_pred cccccccc-------------CCcc----------hHHHHHhhcccccCCcE-EEEeccHHHHHHHHHHHh--cCCceEE
Q 003776 712 DHLFSKIK-------------KRCN----------LVAVVAEVDRILRPEGK-LIVRDDVETINELESMVK--GMQWEVR 765 (796)
Q Consensus 712 ~~~~s~~~-------------~rC~----------~~~~l~E~DRiLRP~G~-~i~rd~~~~~~~~~~~~~--~l~W~~~ 765 (796)
+.-|.... .+.. +..+|-++-|+|+|||+ +++.-.......+..++. ...|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 64442211 0111 16778899999999999 776544444556666666 5556442
Q ss_pred --EeeccCCceEEEEEec
Q 003776 766 --MTYSKDKEGLLCVEKS 781 (796)
Q Consensus 766 --~~~~~~~e~~l~~~K~ 781 (796)
..+..+..++++++|.
T Consensus 188 ~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEECTTSCEEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEc
Confidence 2344556788888874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.6e-06 Score=85.33 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=62.7
Q ss_pred ccccccccCccccceeeecc---CCCeEEEEeecCCCC-CChhHHHhh-----cccc----cccccccccCCCC------
Q 003776 643 TVRNVMDMRSVYGGFAAAMK---DISVWVMNVISIDSP-DTLPIIYER-----GLFG----IYHDWCESFSTYP------ 703 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~---~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig----~~~~~ce~f~typ------ 703 (796)
.-..|||+|||.|.++..|. ....-| +-+|-. ..+..+-++ |+.. +..|.. .++.-.
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQI---IGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEE---EEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEE---EEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccC
Confidence 46789999999999999998 443333 333333 455555443 2211 123332 223212
Q ss_pred ccccccccccccccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 704 RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
.+||+|++..+|... ....+|-++-|+|||||++++
T Consensus 112 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 112 QKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 699999998877655 678899999999999999998
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.9e-06 Score=83.80 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=66.9
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccccccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-..|||+|||.|.++.+|.....- +|+-+|-. ..+..+-++. +--+..|. +.++.-+.+||+|.+.++|..
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhh
Confidence 3467999999999999999876431 33444443 4555555542 22223333 334433589999999988876
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+. ....+|-++-|+|||||++++..
T Consensus 121 ~~---~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 121 IA---SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hh---hHHHHHHHHHHHcCCCcEEEEEe
Confidence 63 36788999999999999999963
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.5e-05 Score=76.88 Aligned_cols=120 Identities=10% Similarity=0.119 Sum_probs=75.1
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCccccccccc-cccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHAD-HLFSKI 718 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~-~~~s~~ 718 (796)
.-.+|||+|||.|.++..|..... +|+-++.. ..+..+-++. +--+..|... ++.-+.+||+|.+. .++...
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhc
Confidence 345799999999999999987643 33333433 3344443332 2112233332 23224789999987 555543
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccHH---HHHHHHHHHhcCCceEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDVE---TINELESMVKGMQWEVRMT 767 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~---~~~~~~~~~~~l~W~~~~~ 767 (796)
..=....+|-++-|+|+|||++++..... ....+..++....+++...
T Consensus 122 -~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 -AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp -CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEE
T ss_pred -ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeee
Confidence 12234678999999999999999953222 3566777777777776543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.8e-06 Score=86.78 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=65.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---cc-cccccccccC-CCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---FG-IYHDWCESFS-TYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~~ce~f~-typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++..|.....- |+-+|.. ..+..+-++ |+ +- +..|.. .++ ..+.+||+|.+.++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ-DVASHLETPVDLILFHAV 145 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG-GTGGGCSSCEEEEEEESC
T ss_pred CEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH-HhhhhcCCCceEEEECch
Confidence 47999999999999999877543 3333333 445444443 43 21 233443 333 34589999999988
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|..+. ....+|-++-|+|||||+++|.+
T Consensus 146 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 146 LEWVA---DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccc---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 87664 34678999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=3.6e-06 Score=85.86 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=66.8
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++..|... .. .|+-+|.. ..+..+-++. +--+..|... ++.-+.+||+|++.++|
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAI 130 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHH
Confidence 3457999999999999988765 33 33333433 4555555553 2223344433 33335899999998887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+. .-....+|-++-|+|||||++++.+
T Consensus 131 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 131 LALS-LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 7652 2345678999999999999999964
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.7e-05 Score=82.27 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=75.0
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-cccc-cccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.+|||+|||.|.++.++..... .|+-+|-. ..+..+-++ |+ +-++ .|+...++ +..||+|.++.++.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAE- 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHH-
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHH-
Confidence 5799999999999888876543 44444443 445544443 43 2222 23444343 36899999765543
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~~~~ 767 (796)
.+..++-++-|+|||||++++... ......+..+++...+++...
T Consensus 196 -----~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 196 -----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred -----HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 256789999999999999999743 235667778777777877544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-05 Score=77.87 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=71.6
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-cccc-cccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FGIY-HDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||+|||.|.++.+|..... +|+-+|.. ..+..+-++ |+ +-++ .|. ..++.-+.+||+|.+. |..+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEE--hhcC
Confidence 799999999999999988754 45555554 445544444 32 2222 222 2333224799999973 2222
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEecc-----------------HHHHHHHHHHHhcCCceEEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDD-----------------VETINELESMVKGMQWEVRM 766 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~-----------------~~~~~~~~~~~~~l~W~~~~ 766 (796)
..-....+|-++-|+|+|||++++... .-....+..++. .|++..
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 223456789999999999999999621 113456677766 676654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.1e-05 Score=75.06 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=79.8
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhh----cc---cc-cccccccccC-CCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYER----GL---FG-IYHDWCESFS-TYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~~ce~f~-typrtyDl~Ha~ 712 (796)
.+|||+|||.|.++.+|... +-- .|+-+|.. ..+..+-++ |+ +- +..|. +.++ ..+.+||+|-++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEc
Confidence 37999999999999888764 211 34444443 444444333 33 22 22333 2333 345799999977
Q ss_pred cccccccCCc------chHHHHHhhcccccCCcEEEEec------cHHHHHHHHHHHhcCC---ceEEEeec----cCCc
Q 003776 713 HLFSKIKKRC------NLVAVVAEVDRILRPEGKLIVRD------DVETINELESMVKGMQ---WEVRMTYS----KDKE 773 (796)
Q Consensus 713 ~~~s~~~~rC------~~~~~l~E~DRiLRP~G~~i~rd------~~~~~~~~~~~~~~l~---W~~~~~~~----~~~e 773 (796)
..|-....+. ....+|-++-|+|||||++++.. .......+..++..+. |.+..... ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp 180 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP 180 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence 6551111111 22358999999999999999863 2234556667776554 87765421 2234
Q ss_pred eEEEEEecc
Q 003776 774 GLLCVEKSM 782 (796)
Q Consensus 774 ~~l~~~K~~ 782 (796)
.++|.+|.+
T Consensus 181 ~~~~~~~~~ 189 (197)
T 3eey_A 181 ILVCIEKIS 189 (197)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcc
Confidence 566666653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=80.16 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=64.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCCc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
-..|||+|||.|.++..|... +-+|.. ..+..+-++++--+..|. +.++.-+.+||+|.+.++|....
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGSS---
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhcc---
Confidence 468999999999999999876 222322 455566666543233333 33443347999999988876553
Q ss_pred chHHHHHhhcccccCCcEEEEe
Q 003776 723 NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++-|+|+|||++++.
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEE
Confidence 3567899999999999999996
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=8.3e-06 Score=82.83 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=60.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc------ccccccccccccCCC-Cccccccccc-ccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG------LFGIYHDWCESFSTY-PRTYDLLHAD-HLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG------lig~~~~~ce~f~ty-prtyDl~Ha~-~~~ 715 (796)
..|||+|||.|.++..|.....- .|+-+|.. ..+..+-++. +-=+..|+.+..+.+ +.+||+|.++ ..+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence 46999999999999999775432 44445554 5555555443 111223333321222 4799999873 221
Q ss_pred cc-ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SK-IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~-~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ....-....+|-|+-|+|||||++++-+
T Consensus 140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 11 1111223467999999999999999864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.1e-05 Score=84.53 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=63.8
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----c--ccccccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----G--LFGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----G--lig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-.+|||+|||.|.++..|.+. ..-|.-| |-. ..+..+-++ | +-=+..|.. .++ ++.+||+||+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~ 96 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICH 96 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEEC
Confidence 4567999999999999999875 2222222 222 333333332 2 111233443 344 37899999999
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.++..+. ....+|-++-|+|||||++++.+.
T Consensus 97 ~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 97 AFLLHMT---TPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp SCGGGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ChhhcCC---CHHHHHHHHHHHcCCCCEEEEEec
Confidence 8877654 346789999999999999998643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.64 E-value=4e-05 Score=77.39 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=78.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++.+|.....- |+-+|.. ..+..+-++ |+. =+..|+.. ++ .+.+||+|.+..+|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 48999999999999999876543 4444443 444444333 221 12334433 22 24689999988877
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEeccH-----------HHHHHHHHHHhcCCceEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV-----------ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-----------~~~~~~~~~~~~l~W~~~~~ 767 (796)
..+. .-....+|-++-|+|+|||++++.+.. -....+..++...-|++...
T Consensus 143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 143 CAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp TTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 6553 335667899999999999999984221 13567888888888887643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.62 E-value=9.1e-06 Score=84.01 Aligned_cols=95 Identities=13% Similarity=0.263 Sum_probs=63.4
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhh----cc--cc-cccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYER----GL--FG-IYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-..|||+|||.|.++..|... ..-|.-| |.. ..+..+-++ |+ +- +..|.. .++.-+.+||+|++..
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCF 113 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEec
Confidence 457999999999999988765 3333333 332 344444333 33 11 222332 3443358999999988
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+|..+.. ...+|-++-|+|||||++++.+
T Consensus 114 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 114 VLEHLQS---PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 8876643 4578999999999999999964
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.2e-05 Score=75.00 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=69.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cccccccccccCCC-Cccccccccc-ccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FGIYHDWCESFSTY-PRTYDLLHAD-HLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~~ce~f~ty-prtyDl~Ha~-~~~ 715 (796)
..|||+|||.|.++..|..... .|+-+|-. ..+..+-+ .|+ +-++++-.+.++.| +.+||+|.++ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 4699999999999999988733 33333433 34443333 344 33444434444323 5789999654 222
Q ss_pred cccc-----CCcchHHHHHhhcccccCCcEEEEecc------HHHHHHHHHHHhcCC---ceEEE
Q 003776 716 SKIK-----KRCNLVAVVAEVDRILRPEGKLIVRDD------VETINELESMVKGMQ---WEVRM 766 (796)
Q Consensus 716 s~~~-----~rC~~~~~l~E~DRiLRP~G~~i~rd~------~~~~~~~~~~~~~l~---W~~~~ 766 (796)
..-. ..-....+|-++-|+|||||.+++..- ......+..++..+. |.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAML 165 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 1100 011223568899999999999998522 234455666665554 66644
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.6e-06 Score=92.13 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=84.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhccccccccc----ccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDW----CESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~----ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-..|||+|||.|.|+.+|..... +|+-+|-. ..+..+-++|+-.....+ .+.++.-+.+||+|.+.++|..
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHh
Confidence 345799999999999999988755 45555555 677788888753322111 1222322489999999999987
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEeccH--------------------HHHHHHHHHHhcCCceEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDDV--------------------ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~--------------------~~~~~~~~~~~~l~W~~~~~ 767 (796)
+. ....+|-++-|+|+|||++++.... -....++.++...-+++...
T Consensus 184 ~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 184 IP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp CT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred cC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 75 5778899999999999999996321 02356788888777876543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.2e-05 Score=81.05 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=65.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccccccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-.+|||+|||.|.++..|...+.- .|+-+|.. ..+..+-++. +--+..|.. .++.-+.+||+|.+.++|..
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD-KLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hccCCCCCceEEEEeccccc
Confidence 3467999999999999999876431 22333333 4444554443 222223332 24433579999999888766
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+. ....+|-++-|+|||||++++..
T Consensus 120 ~~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 53 46788999999999999999975
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.62 E-value=9.8e-06 Score=81.63 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=64.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-cc-cccccccccCCCCcccccccccc-ccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FG-IYHDWCESFSTYPRTYDLLHADH-LFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~~ce~f~typrtyDl~Ha~~-~~s 716 (796)
..|||+|||.|.++..|... .+|+-+|.. ..+..+-++ |. +- +..|.. .++ ++.+||+|.+.. +|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR-ELE-LPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG-GCC-CSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh-hcC-CCCCcCEEEEeCCchh
Confidence 67999999999999999876 245555544 445444443 21 11 222332 233 358999999765 666
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+...-.+..+|-++-|+|+|||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5545556678899999999999999984
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.4e-05 Score=79.62 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
|...+..-+..|.+.. .+ .++.+|||||||+|.|+.+++.. .|.++|+...+...+. .. ...+..+..+.
T Consensus 71 YrSRAAfKL~ei~eK~-~L---k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~ 144 (282)
T 3gcz_A 71 AVSRGSAKLRWMEERG-YV---KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFK 144 (282)
T ss_dssp CSSTHHHHHHHHHHTT-SC---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEE
T ss_pred EecHHHHHHHHHHHhc-CC---CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEee
Confidence 3444444455555554 22 35679999999999999988754 5788888753211110 00 00122333344
Q ss_pred cCCCCCCCCCCceeEEEEcCCCccccc----ch---HHHHHHHHhhcCCC--cEEEEEeCC
Q 003776 442 MGTERLPFPGIVFDAVHCARCRVPWHI----EG---GKLLLELNRVLRPG--GFFIWSATP 493 (796)
Q Consensus 442 ~d~e~LPfpd~SFDlVvss~~~l~w~~----d~---~~~L~Ei~RVLKPG--G~fv~s~~~ 493 (796)
.+.....++...+|+|+|..+ .. .- |. ..+|.-+.++|+|| |.|++-+.-
T Consensus 145 ~~~dv~~l~~~~~DvVLSDmA-pn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 145 DKTDVFNMEVIPGDTLLCDIG-ES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CSCCGGGSCCCCCSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCcchhhcCCCCcCEEEecCc-cC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 333333456788999999763 22 11 22 13466678999999 999987544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.60 E-value=1.2e-05 Score=81.57 Aligned_cols=121 Identities=13% Similarity=0.221 Sum_probs=76.7
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc------cc-cccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL------FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++.+|..... ..|+-+|.. ..+..+-++.- +- +..|+ +.++.-+.+||+|.+..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcch
Confidence 356899999999999998876631 133333433 34444433320 11 22232 334433468999998887
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH---------------HHHHHHHHHHhcCCceEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV---------------ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~---------------~~~~~~~~~~~~l~W~~~~~ 767 (796)
|..+... .+..+|-++-|+|+|||++++.+.. .....+..++...-+++...
T Consensus 156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 7655321 2457899999999999999996531 13567777777777776543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.59 E-value=2.3e-05 Score=77.49 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=74.3
Q ss_pred cccccccCccccceeeeccCCC--eEEEEeecCCCC-CChhHHHhh----cc--c-ccccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDIS--VWVMNVISIDSP-DTLPIIYER----GL--F-GIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~--vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-.+|||+|||.|.++..|.... . .|+-+|.. ..+..+-++ |+ + -+..|..+.++. ...||+|-++.
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~ 116 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGG 116 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT-SCCCSEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc-CCCCCEEEECC
Confidence 3579999999999998887542 2 22233332 344444332 43 1 122344344332 25799998666
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEEE
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.+. .+..+|-++-|+|||||.+++.. .......+..+++...|++..
T Consensus 117 ~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 117 SGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp CTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred CCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 543 57789999999999999999974 445677788888888886544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=6.6e-06 Score=87.26 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=63.4
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--------------cccccccccc-----ccCCC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--------------LFGIYHDWCE-----SFSTY 702 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--------------lig~~~~~ce-----~f~ty 702 (796)
.-..|||+|||.|.++..|...+.. .|+-+|.. ..+..+-+|- +--+..|... +|+.-
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 4567999999999999988865432 34444443 4444444431 1112223322 23322
Q ss_pred Cccccccccccccccc-cCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 703 PRTYDLLHADHLFSKI-KKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~-~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+.+||+|.+..++... .+.-....+|-++-|+|+|||++++...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3589999987665432 2223456789999999999999999743
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=9.9e-06 Score=85.15 Aligned_cols=96 Identities=13% Similarity=0.278 Sum_probs=59.4
Q ss_pred ccccccCccccceeee----ccC--CCeEEEEeecCCCC-CChhHHHhh-----cccccccccc----cccC------CC
Q 003776 645 RNVMDMRSVYGGFAAA----MKD--ISVWVMNVISIDSP-DTLPIIYER-----GLFGIYHDWC----ESFS------TY 702 (796)
Q Consensus 645 RnvmDm~~g~g~faA~----l~~--~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~~c----e~f~------ty 702 (796)
..|||+|||.|.++.. |.. ..+-| .++-+|.. .-|..+-+| |+-.+-..|. +.++ .-
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v-~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCcee-eEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 3699999999976543 222 23422 23444443 445544443 3322111111 2222 11
Q ss_pred CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 703 PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+.+||+|++..+|-.+. .....|-||-|+|||||+++|.
T Consensus 133 ~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 48999999988887665 3677899999999999999984
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.58 E-value=7.6e-05 Score=87.85 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=65.3
Q ss_pred CCEEEEECCCCchhHHH----H--hh---------C--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCC
Q 003776 390 TRVVLDVGCGVASFGGF----L--FD---------R--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFP 450 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~----L--a~---------~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfp 450 (796)
...|||||||+|.+... . ++ + .|++++.++..+...+...+ .+. .+.++..+++.+.+|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~--Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV--RTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH--HTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh--cCCCCeEEEEeCchhhcccc
Confidence 45899999999987532 1 12 2 89999999855544443333 333 366777788777653
Q ss_pred -----CCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEE
Q 003776 451 -----GIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 451 -----d~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv 488 (796)
...+|+|+|=. +.... -.+.+|.-+.|.|||||.++
T Consensus 488 ~~~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 47899999954 32221 23578888899999999987
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.57 E-value=1.5e-05 Score=82.15 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cccccccccccCCCCccccccccccccccccC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.-..|||+|||.|.++..|..... +|+-+|.. ..+..+-++.. .-+..|. +.++.-+.+||+|.+.+.+-.+..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHCCCCCCCEEEEEEcchhhhccc
Confidence 345799999999999999987753 34444443 45555555543 1112222 224432479999998765544432
Q ss_pred CcchHHHHHhhcccccCCcEEEEec
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. ...+|-++-|+|+|||.+++..
T Consensus 130 ~--~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 130 N--KDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp C--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--HHHHHHHHHHHcCCCeEEEEEe
Confidence 2 6788999999999999999863
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.9e-05 Score=76.79 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hcccc----cccccccccCCCC----ccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLFG----IYHDWCESFSTYP----RTY 706 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~~ce~f~typ----rty 706 (796)
.-.+|||+|||.|.++.+|... .. .|+-+|.. ..+..+-+ .|+-. +..|..+.++.++ .+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 4568999999999999988765 22 23333332 33333322 25422 2233334333322 569
Q ss_pred cccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHH----HHHHhcCCceEEEee--
Q 003776 707 DLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINEL----ESMVKGMQWEVRMTY-- 768 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~----~~~~~~l~W~~~~~~-- 768 (796)
|+|..+.... ....+|-++-|+|||||++++.+.. .....+ +.+...-+|...+..
T Consensus 135 D~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 208 (223)
T 3duw_A 135 DFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV 208 (223)
T ss_dssp SEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 9998665422 2356788889999999999985322 112222 333344566665432
Q ss_pred -ccCCceEEEEEec
Q 003776 769 -SKDKEGLLCVEKS 781 (796)
Q Consensus 769 -~~~~e~~l~~~K~ 781 (796)
.++.+++++++|+
T Consensus 209 ~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 209 GSKGYDGFIMAVVK 222 (223)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 2335688888764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4e-05 Score=82.17 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CC---CCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FP---GIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fp---d~SFDlVv 458 (796)
.++.+|||+|||+|.++..|+++ .|+++|+++.++..|+... ...+..+.+...+...++ +. ..+||+|+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~-~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 35789999999999999998864 7999999999998887443 223334556666655554 11 14677777
Q ss_pred EcC
Q 003776 459 CAR 461 (796)
Q Consensus 459 ss~ 461 (796)
+..
T Consensus 104 ~D~ 106 (301)
T 1m6y_A 104 MDL 106 (301)
T ss_dssp EEC
T ss_pred EcC
Confidence 654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0002 Score=85.59 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHH-----cCCCeEEEEc-CCCCC-CCCCCce
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALE-----RGIPAISAVM-GTERL-PFPGIVF 454 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~e-----rgl~~~~~v~-d~e~L-Pfpd~SF 454 (796)
.+.+|||.|||+|.++..++.+ .++|+|+++..+..|+.+.... .++....+.. +...+ +.....|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 4679999999999999887753 5899999998887774333221 2333222233 23222 2345789
Q ss_pred eEEEEcCCCcc-ccc--------------------------c-hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 455 DAVHCARCRVP-WHI--------------------------E-GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 455 DlVvss~~~l~-w~~--------------------------d-~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+|+++..+.. +.. + ...++..+.+.|+|||++++..+
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999876432 111 0 12356779999999999998755
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=78.48 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----c--------ccccccccccccCCCCccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----G--------LFGIYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~~ce~f~typrtyDl 708 (796)
.-..|||+|||.|.|+.+|... +.. +|+-+|-. ..+..+-++ | +-=+..|. ...+..+.+||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFE--QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDA 105 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCS--EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCC--EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCE
Confidence 3458999999999999998764 211 23333333 444444443 1 11112232 122222368999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEeccHH
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE 748 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~ 748 (796)
|.+..+|..+ ..-.+..+|-++-|+|+|||++|+.....
T Consensus 106 v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 106 ATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred EeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 9998888765 33345678999999999999988865543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=77.60 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=74.6
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc--ccc-ccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL--FGI-YHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~-~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++.+|... |-. .|+-+|.. ..+.++-+ .|+ +-+ ..|+.. ++ .+.+||+|.+..+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 47999999999998888643 211 23333332 33333322 244 222 233333 22 1368999996543
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEe------eccCCceEEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT------YSKDKEGLLCVEKS 781 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~------~~~~~e~~l~~~K~ 781 (796)
..+..+|-++-|+|+|||++++.........++.+.+ .|+.... +......++++.|.
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3467889999999999999999855555556666666 6775431 11233456666663
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=71.16 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=81.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCC--
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR-- 721 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r-- 721 (796)
..|||+|||.|.++.+|..+- .|+-+|-. ..+.. ...+--+..|..++++ +.+||+|-++..|-.....
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhcc--cCCCCEEEECCCCccCCcccc
Confidence 379999999999999998875 45544443 22322 2233334455555544 3899999987766542222
Q ss_pred ----cchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEEEe--eccCCceEEEEE
Q 003776 722 ----CNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVRMT--YSKDKEGLLCVE 779 (796)
Q Consensus 722 ----C~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~~~--~~~~~e~~l~~~ 779 (796)
.....++-++=|.| |||.+++.. .......+.++++...|+.... .....+.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 22345667777777 999999864 3345677888888888887544 233455665554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.55 E-value=1.3e-05 Score=87.99 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=63.7
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhh---------c-c----cc-ccccccccc------
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYER---------G-L----FG-IYHDWCESF------ 699 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eR---------G-l----ig-~~~~~ce~f------ 699 (796)
=..|||+|||.|.++..|... +-. .|+-+|-. ..+..+-++ | + +- +..|+.. +
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~-l~~~~~~ 160 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN-LATAEPE 160 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC-GGGCBSC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH-hhhcccC
Confidence 357999999999988887653 211 23333333 455555544 4 1 11 2234433 2
Q ss_pred CCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 700 STYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 700 ~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+.+||+|++..+|..+.. ...+|-++-|+|||||++++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 332479999999998876643 5688999999999999999963
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.8e-05 Score=82.45 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=74.6
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-c-ccccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-F-GIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++.+|..... +|+-+|.. ..+..+-+ .|+ + -+..|... ++. +.+||+|.+..+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccch
Confidence 345799999999999999987754 34444443 33433332 343 1 12223322 232 6899999999888
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEecc--------------HHHHHHHHHHHhcCCceEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDD--------------VETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~--------------~~~~~~~~~~~~~l~W~~~~~ 767 (796)
... ..-.+..+|-++-|+|+|||+++|-.. .-....++.+... |++...
T Consensus 195 ~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 195 MFL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GGS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 644 344566789999999999999777311 1123456666665 877553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.54 E-value=4.2e-05 Score=77.84 Aligned_cols=129 Identities=15% Similarity=0.265 Sum_probs=77.4
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc---c-ccccccccccC-CCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL---F-GIYHDWCESFS-TYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---i-g~~~~~ce~f~-typrtyDl~Ha 711 (796)
.-++|||+|||.|.++.+|... + ...|+-+|.. ..+.++-+ .|+ | =+..|..+.++ ..+.+||+|.+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 4578999999999999998762 1 1233333333 33333322 343 1 12344445455 45689999985
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc-----------------HHHHHHHHH----HHhcCCceEEEeecc
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-----------------VETINELES----MVKGMQWEVRMTYSK 770 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-----------------~~~~~~~~~----~~~~l~W~~~~~~~~ 770 (796)
+.- .-.+..+|-++-|+|||||++|+.+. ......++. +...-+|...+. .
T Consensus 149 ~~~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p 220 (232)
T 3ntv_A 149 DAA------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL--N 220 (232)
T ss_dssp ETT------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE--C
T ss_pred cCc------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE--E
Confidence 532 22356678899999999999999211 112223333 334556776554 2
Q ss_pred CCceEEEEEec
Q 003776 771 DKEGLLCVEKS 781 (796)
Q Consensus 771 ~~e~~l~~~K~ 781 (796)
-.+++++++|+
T Consensus 221 ~~dG~~i~~k~ 231 (232)
T 3ntv_A 221 IDDGLAISIKG 231 (232)
T ss_dssp STTCEEEEEEC
T ss_pred cCCceEEEEEC
Confidence 24678998884
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.1e-05 Score=77.26 Aligned_cols=92 Identities=16% Similarity=0.321 Sum_probs=54.0
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-C----ChhHHHhh-cccccccccccc--cCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-D----TLPIIYER-GLFGIYHDWCES--FSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~----~l~~i~eR-Glig~~~~~ce~--f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++..|.+. .- .|+-+|-. . .+..+-.+ ++.-+..|...+ +..++.+||+|.++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 36999999999998876542 11 12223332 1 11222222 233344455443 123458999998762
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
...-....+|-|+-|+|||||.+++.
T Consensus 135 ----~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 ----AQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp ----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----cChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11112334588999999999999985
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.8e-05 Score=79.98 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=68.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-cccc-----ccccc-cccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-LFGI-----YHDWC-ESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig~-----~~~~c-e~f~typrtyDl~Ha~~~~s 716 (796)
+.|||+|||+|+|+..|...... .|+-+|-. ..|..+..+. -++. +...+ ..++. .-||.+-++.+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 46999999999999988876531 33444443 5666555432 1111 11111 22322 0134444444444
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe-------------------ccH---HHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR-------------------DDV---ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r-------------------d~~---~~~~~~~~~~~~l~W~~~~~ 767 (796)
. +..+|-|+-|+|||||++++- |.. ..+.++..++...-|.+...
T Consensus 115 ~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~ 181 (232)
T 3opn_A 115 S------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL 181 (232)
T ss_dssp C------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred h------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence 3 367899999999999999874 111 24566778888888887654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.1e-05 Score=76.16 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=72.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-----cccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-----GLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-..|||+|||.|.++..|.....- +|+-+|-. ..+..+-++ .+--+..|... ++.-+.+||+|.+.++|..
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchhh
Confidence 357999999999999988765321 23333332 333333333 12222334332 2322479999998887764
Q ss_pred ccC------------CcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHH--hcCCceEEEe
Q 003776 718 IKK------------RCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMV--KGMQWEVRMT 767 (796)
Q Consensus 718 ~~~------------rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~--~~l~W~~~~~ 767 (796)
... .-.+..+|-++-|+|||||.+++.+.... .....+. ....|.....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHA 182 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEE
Confidence 431 12456889999999999999999764321 1122333 4457876544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=2.6e-05 Score=74.97 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=73.5
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc----cccccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL----FGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl----ig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-.+|||+|||.|.++..|...- ..|+-+|.. ..+..+-+ .|+ --+..|+.+.++.. ..||+|.+.+.
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCc
Confidence 4579999999999998887764 234444443 33443333 232 12234444444431 47999987766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVR 765 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~ 765 (796)
+. .+..+|-++-|+|+|||++++.. .......+..+++...|++.
T Consensus 110 ~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 110 GG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp TT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred hH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 53 35788999999999999999864 35566777777776666543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.1e-05 Score=80.96 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=65.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCcccccccc-ccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHA-DHLFSKI 718 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha-~~~~s~~ 718 (796)
.-..|||+|||.|.++..|....- +|+-+|.. ..+..+-++. +--+..|.. .++. +.+||+|.+ .++|...
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-DFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-TCCC-SSCEEEEEECTTGGGGC
T ss_pred CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-Hccc-CCCCcEEEEcCchHhhc
Confidence 346799999999999998876522 34444443 4455555442 222223332 2343 689999994 4466555
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
...-.+..+|-++-|+|+|||++++.+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 443456778999999999999999974
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.3e-05 Score=84.39 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=62.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----c------ccccccccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----G------LFGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----G------lig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.|||+|||.|.++..|..... .|+-+|-. ..+..+-+| | +-=+..|.. .++. +.+||+|.+...
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCCC-SCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCCc-CCCcCEEEECCc
Confidence 799999999999999988753 34444443 445444443 1 112233433 3443 789999885433
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+-.+...-.+..+|-++-|+|||||+++|..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2223333346788999999999999999963
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.52 E-value=1.2e-05 Score=80.98 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=61.9
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhh-----cccccccccccccCCCCcccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYER-----GLFGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
-..|||+|||.|.++.+|... .. .|+-+|.. ..+..+-++ .+--+..|. +.++ ++.+||+|.+..+|
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYD-FEEKYDMVVSALSI 119 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCT-TTCC-CCSCEEEEEEESCG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCch-hccC-CCCCceEEEEeCcc
Confidence 367999999999999988765 22 22333332 444444444 122222333 2233 23899999998877
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+. .-....+|-++-|+|||||++++.+
T Consensus 120 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 120 HHLE-DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7652 2222357999999999999999965
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.7e-05 Score=77.03 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=67.3
Q ss_pred cccccccCccccceeeeccCC------CeEEEEeecCCCC-CChhHHHhhcccccccccccc--cCCCCc-ccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI------SVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCES--FSTYPR-TYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~------~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~--f~typr-tyDl~Ha~~ 713 (796)
-..|||+|||.|.+++.|... .--|..|=..... .... -+...+-=+..|..+. ++..+. .||+|+.+.
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-ccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 357999999999999988643 2233333332222 1111 0111122233454442 332233 699999654
Q ss_pred ccccccCCcchHHHHHhhcc-cccCCcEEEEeccHH-----HHHHHHHHHhcC--CceEE
Q 003776 714 LFSKIKKRCNLVAVVAEVDR-ILRPEGKLIVRDDVE-----TINELESMVKGM--QWEVR 765 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DR-iLRP~G~~i~rd~~~-----~~~~~~~~~~~l--~W~~~ 765 (796)
. + -.+..+|.++-| +|||||++++.|... ....+..+++.. ++.+.
T Consensus 161 ~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 161 A-----H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp S-----C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred c-----h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 3 1 256778999998 999999999976311 123667777766 56653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.52 E-value=1.7e-05 Score=83.03 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=53.2
Q ss_pred ccccccccccccccccCC-cchHHHHHhhcccccCCcEEEEeccH----------------HHHHHHHHHHhcCCceEEE
Q 003776 704 RTYDLLHADHLFSKIKKR-CNLVAVVAEVDRILRPEGKLIVRDDV----------------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~r-C~~~~~l~E~DRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~l~W~~~~ 766 (796)
.+||+|-+..+|...... -....+|-+|-|+|||||+|++.+.. -....+..++..--+++..
T Consensus 173 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 173 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp SSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred CCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEE
Confidence 679999988887664433 24678899999999999999985211 1356677777666666543
Q ss_pred ee------------ccCCceEEEEEecccC
Q 003776 767 TY------------SKDKEGLLCVEKSMWR 784 (796)
Q Consensus 767 ~~------------~~~~e~~l~~~K~~w~ 784 (796)
.. .+...-++++.|+-|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T 2g72_A 253 LRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282 (289)
T ss_dssp EEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred eeEeeccccccccccCcceEEEEEEecccc
Confidence 21 0112356677776663
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.52 E-value=6.8e-05 Score=83.75 Aligned_cols=106 Identities=13% Similarity=-0.013 Sum_probs=69.3
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc--CC-CeEEEEcCCCC-CCC-CCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER--GI-PAISAVMGTER-LPF-PGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er--gl-~~~~~v~d~e~-LPf-pd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..|+.. .|+++|+++.++..++... ... |+ .+.+...|... |+. ++++||+|++...
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~-~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNI-PLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhH-HHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 689999999999999999875 7999999999998887444 444 55 35667777654 342 3458999999642
Q ss_pred C-------cccccchHHHHHHHHhhcC-CCcEEEEEeCCCCC
Q 003776 463 R-------VPWHIEGGKLLLELNRVLR-PGGFFIWSATPVYQ 496 (796)
Q Consensus 463 ~-------l~w~~d~~~~L~Ei~RVLK-PGG~fv~s~~~~~~ 496 (796)
+ +....+..--+.++.++|+ .+..+++-..|+.+
T Consensus 173 rr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ld 214 (410)
T 3ll7_A 173 RRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMID 214 (410)
T ss_dssp EC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTTSC
T ss_pred CcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCCCC
Confidence 1 1111122233455555443 34556666555554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.52 E-value=2e-05 Score=77.67 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=60.2
Q ss_pred cccccccCccccceee-eccCCCeEEEEeecCCCC-CChhHHHhh----cc-cc-cccccccccCCCCcccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAA-AMKDISVWVMNVISIDSP-DTLPIIYER----GL-FG-IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA-~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
-..|||+|||.|.+++ .|..... .|+-+|.. ..+..+-++ |. +- +..|.. .++.-+.+||+|.+.+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChH
Confidence 3579999999999854 4433333 33334433 333333332 31 11 222332 344324799999988777
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+. .-....+|-++-|+|+|||++++.+
T Consensus 100 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6542 2346678999999999999999864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.51 E-value=6.3e-05 Score=80.89 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=85.9
Q ss_pred ccccc-cccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHh----hcc----cccccccccccCCCCcccc
Q 003776 639 INWST-VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYE----RGL----FGIYHDWCESFSTYPRTYD 707 (796)
Q Consensus 639 i~w~~-iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGl----ig~~~~~ce~f~typrtyD 707 (796)
+.|.. .+.|||+|||.|.++.+|... .+-+..+ |-+..+..+-+ .|+ --+-+|....-+..|..||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW---DLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE---ECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE---ECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 35566 889999999999999888653 2322222 22334443332 243 2234454443222567899
Q ss_pred ccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH----------H-----------------HHHHHHHHHhcC
Q 003776 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV----------E-----------------TINELESMVKGM 760 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~----------~-----------------~~~~~~~~~~~l 760 (796)
+|.+.++|..|... ....+|-++-|+|+|||+++|-+.. . ....++.+++.-
T Consensus 251 ~v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 251 VVMLNDCLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred EEEEecccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 99999988776432 2356899999999999999985410 0 123355566555
Q ss_pred CceEEEeeccCCceEEEEEec
Q 003776 761 QWEVRMTYSKDKEGLLCVEKS 781 (796)
Q Consensus 761 ~W~~~~~~~~~~e~~l~~~K~ 781 (796)
-+++.-. ..+...+++++|+
T Consensus 330 Gf~~~~~-~~g~~~l~~a~kp 349 (352)
T 3mcz_A 330 GLAVGER-SIGRYTLLIGQRS 349 (352)
T ss_dssp TCEEEEE-EETTEEEEEEECC
T ss_pred CCceeee-ccCceEEEEEecC
Confidence 6665432 2344568888885
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.51 E-value=1.6e-05 Score=81.05 Aligned_cols=95 Identities=24% Similarity=0.204 Sum_probs=63.4
Q ss_pred ccccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-.+|||+|||.|.++..|... .. .|+-+|.. ..+..+-++. +--+..|. +.++ .+.+||+|++.++|..
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 3457999999999999888654 22 12222322 4455555542 21122333 3344 4689999999887765
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ....+|-++-|+|||||++++..
T Consensus 108 ~~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VP---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 53 46778999999999999999963
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.2e-05 Score=73.10 Aligned_cols=109 Identities=11% Similarity=0.158 Sum_probs=75.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
.+|||+|||.|.++..|.....- |+-+|.. ..+..+.++ |+ --+..|+.++++. .+||+|.+..+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCKF---VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSSE---EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 47999999999999999874322 3333332 334433333 33 2233455555553 68999997776
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
..+..+|-++-|+ |||++++.. ....+..+..+++...|++...
T Consensus 110 -----~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -----KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -----SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 4567888899998 999999986 5667778888888888887764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=4.1e-05 Score=76.99 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=75.0
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hcccc----cccccccccCCCC-----cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLFG----IYHDWCESFSTYP-----RT 705 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~~ce~f~typ-----rt 705 (796)
.-++|||+|||.|.++.+|... ..- |+-+|.. ..+.++-+ .|+-. +..|..+.++.++ .+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGAR---LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCE---EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCE---EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 4678999999999999888763 222 2223332 33333322 24421 2345445556555 68
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc-----HHHHHHHHHHHhcCCceEEEee-----ccCCceE
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-----VETINELESMVKGMQWEVRMTY-----SKDKEGL 775 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-----~~~~~~~~~~~~~l~W~~~~~~-----~~~~e~~ 775 (796)
||+|.+++....+. ....++.++ |+|||||++++.+- ..++..++ ..-+|...... ....+++
T Consensus 135 fD~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dG~ 207 (221)
T 3u81_A 135 LDMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVDGL 207 (221)
T ss_dssp CSEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCCce
Confidence 99998766443321 122456667 99999999998643 23333333 34456655432 1124578
Q ss_pred EEEEec
Q 003776 776 LCVEKS 781 (796)
Q Consensus 776 l~~~K~ 781 (796)
.++.++
T Consensus 208 ~~~~~~ 213 (221)
T 3u81_A 208 EKAIYQ 213 (221)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 887764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.3e-05 Score=83.30 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=62.7
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---ccc-ccccccccCC-CCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---FGI-YHDWCESFST-YPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~-~~~~ce~f~t-yprtyDl~Ha~~ 713 (796)
-..|||+|||.|.++..|...+.. +|+-+|-. ..+..+-++ |+ |-+ ..|.. .++. -+.+||+|.+.+
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-ccccCCCCCcCEEEECc
Confidence 357999999999999888765431 23333433 344444333 22 222 22332 2232 257999999887
Q ss_pred ccccc-cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKI-KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~-~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+|... .+.-....+|-++-|+|||||++++..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76431 233345678999999999999999974
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0001 Score=76.04 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=79.0
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCC-Ccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTY-PRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~ty-prtyDl~Ha~~ 713 (796)
-..|||+|||.|.++..|..+.-. .|+-+|-. ..+..+-+ .|+ |- +..|..+..+.+ +.+||+|-++-
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 347999999999999988876432 45555543 33333322 243 22 233444433333 47999999875
Q ss_pred ccccc-----------------cCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEE
Q 003776 714 LFSKI-----------------KKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 ~~s~~-----------------~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~ 766 (796)
-|... ...+.+..+|-++-|+|||||.+++--....+..+..+++...|....
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 44221 112567789999999999999999976666777788888888887653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00012 Score=75.43 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=78.2
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCc--cccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPR--TYDL 708 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typr--tyDl 708 (796)
.-++|||+|||.|.++.+|... ..- |+-+|-. ..+..+-++ |+- =+..|..+.++..+. +||+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQ---LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCE---EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 4578999999999999988765 222 2223332 344443333 442 123455444555444 8999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHH----HHHHhcCCceEEEee---c
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINEL----ESMVKGMQWEVRMTY---S 769 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~----~~~~~~l~W~~~~~~---~ 769 (796)
|.++.- .-....+|-++-|+|||||++|+.+.. .....+ +.|...-+|...+.. .
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~ 213 (248)
T 3tfw_A 140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGT 213 (248)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECST
T ss_pred EEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCC
Confidence 986542 112345788888999999999985322 112223 333455577765431 1
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
...+++++++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 335789999986
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=4.2e-05 Score=79.31 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred hhhHHHHHHhhcccccceeeeccc------------c----cccccccccccCccccceeeeccCC-CeEEEEeecCCCC
Q 003776 615 PEDFTADYEHWKRVVSKSYLNGMG------------I----NWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP 677 (796)
Q Consensus 615 ~e~F~eD~e~Wk~rV~~tY~~~lg------------i----~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~ 677 (796)
.+.|.+-...|.++++.+|+.... + .-..-..|||+|||.|.++..|... |-+ .|+-+|..
T Consensus 36 ~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s 113 (249)
T 3g89_A 36 FSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDAT 113 (249)
T ss_dssp HHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESC
T ss_pred HHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECC
Confidence 455666667777766654432211 0 0123357999999999988776532 211 22333333
Q ss_pred -CChhHH----Hhhcc--cccccccccccC---CCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEec--
Q 003776 678 -DTLPII----YERGL--FGIYHDWCESFS---TYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-- 745 (796)
Q Consensus 678 -~~l~~i----~eRGl--ig~~~~~ce~f~---typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-- 745 (796)
..+.++ -.-|+ |-++|.--+.++ .++.+||+|-+..+ ..+..++-++-|+|+|||++++-.
T Consensus 114 ~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 114 RKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGP 186 (249)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 333333 22355 334443334444 24479999986543 346788889999999999988743
Q ss_pred -cHHHHHHHHHHHhcCCceEEEee---c--cCCc-eEEEEEecccCC
Q 003776 746 -DVETINELESMVKGMQWEVRMTY---S--KDKE-GLLCVEKSMWRP 785 (796)
Q Consensus 746 -~~~~~~~~~~~~~~l~W~~~~~~---~--~~~e-~~l~~~K~~w~~ 785 (796)
..+.+..+...++.+.|...-.. . .+.+ .+++.+|.-.+|
T Consensus 187 ~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 187 RVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp CCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred CcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 34566667777777777764321 1 1223 456667755544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.2e-05 Score=75.11 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=75.0
Q ss_pred cccccccCcc-ccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-ccc-ccccccccCCC-Cccccccccccc
Q 003776 644 VRNVMDMRSV-YGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-FGI-YHDWCESFSTY-PRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g-~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig~-~~~~ce~f~ty-prtyDl~Ha~~~ 714 (796)
=..|||+||| .|.++..|.... .-.|+-+|-. ..+..+-+ .|+ +-+ ..|+. .+..+ +.+||+|-++-.
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-IIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hhhhcccCceeEEEECCC
Confidence 3579999999 999988887652 1233333433 33333322 243 222 22321 13233 379999998755
Q ss_pred ccccc----------------CCcchHHHHHhhcccccCCcEEEEe--ccHHHHHHHHHHHhcCCceEEEe
Q 003776 715 FSKIK----------------KRCNLVAVVAEVDRILRPEGKLIVR--DDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 715 ~s~~~----------------~rC~~~~~l~E~DRiLRP~G~~i~r--d~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
|.... ....+..+|-++-|+|+|||++++- ........+.++++...|.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence 43221 1122467899999999999999983 44466788888888888887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.7e-05 Score=84.11 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=63.8
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hccc---c-cccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGLF---G-IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli---g-~~~~~ce~f~typrtyDl~Ha 711 (796)
..-..|||+|||.|.|+..|... .. .|+-+|.. ..+..+-+ .|+- - +..|.. .++.-+.+||+|.+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTPFDKGAVTASWN 191 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCCCCCCCEeEEEE
Confidence 34567999999999999988765 32 23333332 34444433 3432 1 223332 33322379999998
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..+|..+ . ...+|-++-|+|||||++++.
T Consensus 192 ~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 192 NESTMYV-D---LHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp ESCGGGS-C---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhhC-C---HHHHHHHHHHHcCCCcEEEEE
Confidence 8887765 2 888999999999999999985
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=1.1e-05 Score=85.14 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCcccccccccccccccc---CCcchHHHHHhhcccccCCcEEEEe
Q 003776 702 YPRTYDLLHADHLFSKIK---KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 702 yprtyDl~Ha~~~~s~~~---~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+.+||+|.+..++.... ....+..+|-++-|+|||||+|||.
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457999999888764332 4456778899999999999999995
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7e-05 Score=70.55 Aligned_cols=126 Identities=12% Similarity=0.167 Sum_probs=71.7
Q ss_pred cccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhcccccccccccc---------cCCCCcccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCES---------FSTYPRTYDLL 709 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~---------f~typrtyDl~ 709 (796)
-.+|||+|||.|.|+.+|... .|..+-+.| ...+ ..+--+..|+... ++ +.+||+|
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~--~~~~D~i 92 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI-----VGVDFLQGDFRDELVMKALLERVG--DSKVQVV 92 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC-----TTEEEEESCTTSHHHHHHHHHHHT--TCCEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc-----CcEEEEEcccccchhhhhhhccCC--CCceeEE
Confidence 347999999999999888654 344443333 2111 1221123344322 22 4789999
Q ss_pred ccccccccccCC--c------chHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEee------ccCCce
Q 003776 710 HADHLFSKIKKR--C------NLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMTY------SKDKEG 774 (796)
Q Consensus 710 Ha~~~~s~~~~r--C------~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~~------~~~~e~ 774 (796)
.++..+...... - .+..+|-++-|+|||||.+++.... .....+...... .|...... ....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREV 171 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEE
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceE
Confidence 987766533211 0 1157789999999999999996322 122333333333 36543321 123567
Q ss_pred EEEEEe
Q 003776 775 LLCVEK 780 (796)
Q Consensus 775 ~l~~~K 780 (796)
++++++
T Consensus 172 ~~~~~~ 177 (180)
T 1ej0_A 172 YIVATG 177 (180)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777765
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=3.8e-05 Score=80.14 Aligned_cols=132 Identities=11% Similarity=0.209 Sum_probs=83.2
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++.+|... |-+ +|+-+|.. ..+.++-++ |+ --+..|+..+++ +.+||+|-++.-|
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 46999999999999888632 221 34444443 444444333 33 223446666554 4789999987433
Q ss_pred ccc------------cCC----------cchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceE--EEeeccC
Q 003776 716 SKI------------KKR----------CNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEV--RMTYSKD 771 (796)
Q Consensus 716 s~~------------~~r----------C~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~--~~~~~~~ 771 (796)
... ..+ -.+..++-++-|+|+|||++++.........+..+++...|.. ...+..+
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g 266 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGD 266 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 221 111 1235678899999999999999755555566777776655643 2335556
Q ss_pred CceEEEEEe
Q 003776 772 KEGLLCVEK 780 (796)
Q Consensus 772 ~e~~l~~~K 780 (796)
..++++++|
T Consensus 267 ~~r~~~~~~ 275 (276)
T 2b3t_A 267 NERVTLGRY 275 (276)
T ss_dssp SEEEEEEEC
T ss_pred CCcEEEEEE
Confidence 778888775
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=2.9e-05 Score=84.39 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=63.6
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCC-ccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typ-rtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++..|...+. -|.-|=+. ..+.. +-..|+ |-+++.=.+.++ +| .+||+|.+..+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECS---SISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcH---HHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 35799999999999988887743 33333333 23332 333454 333332223333 34 89999998776
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..+...-.+..+|-++.|+|+|||++|.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 55555555677889999999999999974
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.9e-05 Score=84.58 Aligned_cols=100 Identities=13% Similarity=0.314 Sum_probs=64.7
Q ss_pred cccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHhh----cc----cccccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYER----GL----FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~eR----Gl----ig~~~~~ce~f~typrtyDl~Ha 711 (796)
...+.|||+|||.|.++.+|... .+ .++-.|-+..+..+-++ |+ -=+-+|....-.++|..||+|.+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 46789999999999999988652 22 22222223334443332 43 22234443321125689999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+++-.|... ....+|-++-|+|+|||.++|.|
T Consensus 255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 255 SQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred echhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 8888766532 23457899999999999999853
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=1.5e-05 Score=80.49 Aligned_cols=108 Identities=10% Similarity=0.131 Sum_probs=70.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCC-CccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTY-PRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~ty-prtyDl~Ha~~~~s~~~~ 720 (796)
..|||+|||.|.++.+|..... .|+-+|.. ..+..+-++. +-=+..|+.+.+|.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 5699999999999999987743 34444444 5566666652 222345665666643 4799999854
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceE
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEV 764 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~ 764 (796)
-....+|-++-|+|||||.++.-........+..++....+..
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 1345678899999999999994322223344555555555544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.6e-05 Score=76.29 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=74.8
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hcccc----cccccccccCCCC-----cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLFG----IYHDWCESFSTYP-----RT 705 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~~ce~f~typ-----rt 705 (796)
.-.+|||+|||.|.++.+|... ..- |+-+|.. ..+..+-+ .|+-. +..|..+.++.++ .+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGT---LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCE---EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 4468999999999999988765 222 2222322 23333322 24321 2234444444333 78
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHHHH----HHhcCCceEEEeec
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINELES----MVKGMQWEVRMTYS 769 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~~~----~~~~l~W~~~~~~~ 769 (796)
||+|..++- .-....+|-++=|+|||||++++.+.. .....++. +...-+|...+.
T Consensus 141 fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-- 212 (225)
T 3tr6_A 141 YDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI-- 212 (225)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE--
Confidence 999985542 223456788888999999999985332 11223333 334456666554
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
....++++++|+
T Consensus 213 p~~dG~~~~~k~ 224 (225)
T 3tr6_A 213 PIGDGLTLARKK 224 (225)
T ss_dssp CSTTCEEEEEEC
T ss_pred EcCCccEEEEEC
Confidence 224678888884
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.1e-05 Score=73.89 Aligned_cols=126 Identities=15% Similarity=0.237 Sum_probs=68.8
Q ss_pred ccccccCccccceeeeccCC------CeEEEEeecCCCCCChhHHHhhcccccccccccc--------------------
Q 003776 645 RNVMDMRSVYGGFAAAMKDI------SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCES-------------------- 698 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~------~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~-------------------- 698 (796)
..|||+|||.|+++.+|..+ .|+.+-+.|.... .++.-+..|+...
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~--------~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPI--------PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCC--------TTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCC--------CCceEEEccccchhhhhhccccccccccchhhH
Confidence 46999999999999888653 2444444442111 1211122233221
Q ss_pred ------cCCCCccccccccccccccccCC--------cchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCce
Q 003776 699 ------FSTYPRTYDLLHADHLFSKIKKR--------CNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWE 763 (796)
Q Consensus 699 ------f~typrtyDl~Ha~~~~s~~~~r--------C~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~ 763 (796)
|+ +.+||+|.++..+...... -....+|-++-|+|||||.+++.... .....+...++..-..
T Consensus 96 ~~~~~~~~--~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~ 173 (201)
T 2plw_A 96 YKLKEILQ--DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQL 173 (201)
T ss_dssp HHHHHHHT--TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEE
T ss_pred HHHHhhcC--CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHhe
Confidence 22 3689999987654321100 01124788899999999999985221 2233444444443222
Q ss_pred EEEee-----ccCCceEEEEEe
Q 003776 764 VRMTY-----SKDKEGLLCVEK 780 (796)
Q Consensus 764 ~~~~~-----~~~~e~~l~~~K 780 (796)
+.... ....|.++||++
T Consensus 174 v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 174 VHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEECCCC-----CCEEEEEEEE
T ss_pred EEEECCcccCCcCceEEEEEec
Confidence 33221 124578888876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.43 E-value=5.8e-05 Score=75.53 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=69.6
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc---c-cccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF---G-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++.+|..... .|+-+|-. ..+..+-++ |+- - +..|..+.++.. ..||+|-+.+.
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~ 131 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGG 131 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSC
T ss_pred CCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCc
Confidence 35799999999999988876532 23333333 344443332 432 1 223333333332 36999875542
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~~~ 766 (796)
+ ... +|-++-|+|||||.+++.. ..+.+..+..+++...+++..
T Consensus 132 ~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 132 G-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp C-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred c-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 2 355 8999999999999999974 455666777777666666543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0018 Score=71.22 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.++.+||||||++|.++..|+++ .|++||+.+.+-. . .....+.+...|...+..+...||+|+|-..
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~-l------~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~--- 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQS-L------MDTGQVTWLREDGFKFRPTRSNISWMVCDMV--- 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHH-H------HTTTCEEEECSCTTTCCCCSSCEEEEEECCS---
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChh-h------ccCCCeEEEeCccccccCCCCCcCEEEEcCC---
Confidence 46899999999999999999987 7999998763311 1 1223456777777666666678999999762
Q ss_pred cccchHHHHHHHHhhcCCC
Q 003776 466 WHIEGGKLLLELNRVLRPG 484 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPG 484 (796)
..+..++.-+.+.|..|
T Consensus 280 --~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 --EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp --SCHHHHHHHHHHHHHTT
T ss_pred --CChHHhHHHHHHHHhcc
Confidence 24566666666666665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.41 E-value=4.8e-05 Score=76.01 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=71.2
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc--c-ccccccccccCC-C-Ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL--F-GIYHDWCESFST-Y-PRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~~ce~f~t-y-prtyDl~Ha~~ 713 (796)
..|||+|||.|.|+.+|... |- .+|+-+|-. ..+..+.+ .|+ | -+..|+.. ++. + +.+||+|.+..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 46999999999999888643 11 133333433 34443333 343 1 12334433 331 2 46899999763
Q ss_pred cccccc------CCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 714 LFSKIK------KRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 ~~s~~~------~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.. .|. .|-....+|-++-|+|+|||.+++. |.......+.+++....|....
T Consensus 120 ~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 120 SD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp CC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 22 121 1112357899999999999999997 4556667777766655676543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=4.4e-05 Score=81.69 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=66.9
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhccc----ccccccccccCCCCccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGLF----GIYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGli----g~~~~~ce~f~typrtyDl 708 (796)
..|...+.|+|+|||.|.++.+|.+. .+-+..+ |-+..+..+- +.|+- =+-+|..+++| ..||+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~ 238 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVL---DLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGG 238 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEe---cCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcE
Confidence 45777899999999999999888652 2222222 3233333332 22432 23345555544 48999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|.+.+++..|... ....+|-++-|+|+|||+++|-|
T Consensus 239 v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 239 YVLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 9998888776543 23568999999999999999964
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00024 Score=75.76 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=70.1
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
|...+..-+..+.+. ..+ .++.+||||||++|.|+..++++ .|.++|+...+...... ....+..+....
T Consensus 62 yrSRaa~KL~ei~ek-~l~---~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~ 135 (300)
T 3eld_A 62 SVSRGAAKIRWLHER-GYL---RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFK 135 (300)
T ss_dssp CSSTTHHHHHHHHHH-TSC---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEE
T ss_pred ccchHHHHHHHHHHh-CCC---CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEee
Confidence 333333334444444 322 36889999999999999999975 57788886432100000 000011223333
Q ss_pred cCCCCCCCCCCceeEEEEcCCCcc---cccch---HHHHHHHHhhcCCC-cEEEEEeCC
Q 003776 442 MGTERLPFPGIVFDAVHCARCRVP---WHIEG---GKLLLELNRVLRPG-GFFIWSATP 493 (796)
Q Consensus 442 ~d~e~LPfpd~SFDlVvss~~~l~---w~~d~---~~~L~Ei~RVLKPG-G~fv~s~~~ 493 (796)
.+.....+....||+|+|..+ -. +..|. ..+|.-+.++|+|| |.|++-..-
T Consensus 136 ~~~di~~l~~~~~DlVlsD~A-PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 136 DKSNVFTMPTEPSDTLLCDIG-ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CSCCTTTSCCCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCceeeecCCCCcCEEeecCc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 333333455678999999753 22 01121 23466678999999 999987543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.37 E-value=4e-05 Score=79.51 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=33.8
Q ss_pred cccccccccccccccc-CCcchHHHHHhhcccccCCcEEEEec
Q 003776 704 RTYDLLHADHLFSKIK-KRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~-~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+||+|-+..+|...+ +.=.+..+|-+|-|+|||||+||+++
T Consensus 155 ~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 155 PLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5899999988887543 22345678999999999999999984
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.36 E-value=5.6e-05 Score=83.07 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=62.6
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCCcccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
=..|||+|||.|.++..|..... -|.-|=+. ..+.. +-..|+ |-+++.=.+.++ +|..||+|++..++
T Consensus 64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT---KMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS---TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH---HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 45799999999999888877643 33333333 33332 333454 333332223333 45899999986544
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
......-.+..+|-+++|+|+|||++|+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 43333344677899999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=5.5e-05 Score=79.48 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=71.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcccc---cc-cccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLFG---IY-HDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~-~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|+|+.+|....-- .|+-+|.. ..+..+-+ .|+-. ++ .|. ..++. +.+||+|.++..+
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~-~~~~~-~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-RDFPG-ENIADRILMGYVV 202 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-TTCCC-CSCEEEEEECCCS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH-HHhcc-cCCccEEEECCch
Confidence 46999999999999888653211 23333443 33433322 24432 22 233 22332 5789999865443
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEecc-------HHHHHHHHHHHhcCCceEEE
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-------VETINELESMVKGMQWEVRM 766 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-------~~~~~~~~~~~~~l~W~~~~ 766 (796)
. ...+|-++-|+|+|||++++.+. ...+..+...++...|++..
T Consensus 203 ~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 R-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp S-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred h-------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 2 25567789999999999999533 24678888899998998876
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0015 Score=66.16 Aligned_cols=92 Identities=11% Similarity=-0.048 Sum_probs=63.5
Q ss_pred CCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCC----CeEEEEcCCCC---------------C
Q 003776 390 TRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGI----PAISAVMGTER---------------L 447 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl----~~~~~v~d~e~---------------L 447 (796)
.++||++||| +.+..|++ ..|++++.++.....++..++ +.|+ .+.+..+++.. +
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 6799999996 45555554 489999999988877774444 4554 34556565422 2
Q ss_pred C--------C-CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 448 P--------F-PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 448 P--------f-pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ . ..++||+|+.-.. ....++..+.+.|+|||++++.
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEe
Confidence 2 2 2368999998641 1236677788999999999864
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=76.65 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=58.2
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHH--HHHc----C-C--CeEEEEcCCCC-CCCCCCceeEEE
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQF--ALER----G-I--PAISAVMGTER-LPFPGIVFDAVH 458 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~--A~er----g-l--~~~~~v~d~e~-LPfpd~SFDlVv 458 (796)
.+|||+|||+|..+..|+.+ .|+++|+++.....++... +... + + .+.+...|... |+.....||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 79999999999999998864 8999999997644443222 2111 1 1 24566666533 443224799999
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCc
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGG 485 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG 485 (796)
+... .++ .....++++..++||+.+
T Consensus 170 lDP~-y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPM-FPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCC-CCC-CCC-----HHHHHHHHHS
T ss_pred EcCC-CCC-cccchHHHHHHHHHHHhh
Confidence 9864 332 223456777788888765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=73.56 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=76.0
Q ss_pred cccccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhccc---cc-ccccccccCCC-----Ccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLF---GI-YHDWCESFSTY-----PRTYD 707 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGli---g~-~~~~ce~f~ty-----prtyD 707 (796)
..-++|||+|||.|.++.+|... .|+.+-+-|.--...-..+-..|+- -+ ..|..+.++.+ +.+||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 34678999999999998887642 3444444333222223334444542 22 22333434433 47899
Q ss_pred ccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHHHHHH----hcCCceEEEeeccC
Q 003776 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINELESMV----KGMQWEVRMTYSKD 771 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~~~~~----~~l~W~~~~~~~~~ 771 (796)
+|.++... -....+|-++-|+|||||++++.|.. .....++++. ..=++++.+. .-
T Consensus 139 ~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~ 210 (242)
T 3r3h_A 139 FIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL--AI 210 (242)
T ss_dssp EEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE--SS
T ss_pred EEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE--Ec
Confidence 99866531 12345677888999999999984321 1122333333 4445665544 22
Q ss_pred CceEEEEEec
Q 003776 772 KEGLLCVEKS 781 (796)
Q Consensus 772 ~e~~l~~~K~ 781 (796)
.+++++++|+
T Consensus 211 ~dG~~~~~k~ 220 (242)
T 3r3h_A 211 ADGMFLVQPI 220 (242)
T ss_dssp SSCEEEEEEC
T ss_pred cCceEEEEEc
Confidence 4678888874
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00018 Score=79.49 Aligned_cols=118 Identities=16% Similarity=0.000 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH--------cCCCeEE
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE--------RGIPAIS 439 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e--------rgl~~~~ 439 (796)
..|.+.|..... .. .++++||-||.|.|..++.+++. .|+.++|++..+..++.-+..- +...+..
T Consensus 190 ~~Y~e~l~h~~l-~~--~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~v 266 (381)
T 3c6k_A 190 LAYTRAIMGSGK-ED--YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQV 266 (381)
T ss_dssp HHHHHHHTTTTC-CC--CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEE
T ss_pred HHHHHHHHHHHh-hc--CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceee
Confidence 346665544332 22 34689999999999999999875 7899999998776665322110 0111344
Q ss_pred EEcCCCC----CCCCCCceeEEEEcCCC-----ccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 440 AVMGTER----LPFPGIVFDAVHCARCR-----VPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 440 ~v~d~e~----LPfpd~SFDlVvss~~~-----l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+.|... .+-..+.||+|+.-... .+... -...++..++++|+|||.|+...
T Consensus 267 ii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 267 LIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5555321 11134679999985310 01111 11466788999999999998653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=73.98 Aligned_cols=116 Identities=9% Similarity=0.111 Sum_probs=69.5
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc--cc-cccccccccCC-C-Ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL--FG-IYHDWCESFST-Y-PRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~~ce~f~t-y-prtyDl~Ha~~ 713 (796)
..|||+|||.|.|+.+|... |- .+|+-+|-. .-+..+.. .|+ |- +.+|... ++. + +.+||+|+...
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEEC
Confidence 35999999999999988653 21 134444544 34444333 354 22 2234333 321 2 47899987432
Q ss_pred cccccc------CCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceE
Q 003776 714 LFSKIK------KRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEV 764 (796)
Q Consensus 714 ~~s~~~------~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~ 764 (796)
. ..|. .|-....+|-++-|+|+|||.+++. |.......+..++....|..
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 1 1221 2222467899999999999999987 56666666666655545654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.31 E-value=4.2e-05 Score=76.12 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=62.6
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----c--ccccccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----G--LFGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----G--lig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||.|.++..|....- .|+-+|.. ..+..+-++ | +--+..|... ++.-+.+||+|.+..++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCchH
Confidence 45799999999999988876633 44444443 344444333 1 2223334433 332247999999887743
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+. .-....+|-++-|+|+|||.+++.+.
T Consensus 115 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 115 HFE-PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GCC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 321 12346789999999999999998754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.31 E-value=4.2e-05 Score=82.63 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=62.9
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChh--HHHhhccc----ccccccccccCCCCccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLP--IIYERGLF----GIYHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~--~i~eRGli----g~~~~~ce~f~typrtyDl~H 710 (796)
+.|.....|||+|||.|.++.+|... .+-+..+ |-+..+. .+-..|+- =+-+|..+++ | +||+|.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---p-~~D~v~ 252 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLL---DRAEVVARHRLDAPDVAGRWKVVEGDFLREV---P-HADVHV 252 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEE---ECHHHHTTCCCCCGGGTTSEEEEECCTTTCC---C-CCSEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEe---cCHHHhhcccccccCCCCCeEEEecCCCCCC---C-CCcEEE
Confidence 35677899999999999999888652 3322221 1110000 00112321 2334544444 4 899999
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+.++|-.|... ....+|-++-|+|||||+++|.|
T Consensus 253 ~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 253 LKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 98888766532 12468999999999999999854
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.29 E-value=9.1e-05 Score=73.64 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHH----hhccc---cc-ccccccccCCCCccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIY----ERGLF---GI-YHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~----eRGli---g~-~~~~ce~f~typrtyDl~H 710 (796)
.-+.|||+|||.|.++.+|... ..-|.. +|.. ..+.++- ..|+- -+ ..|..+.++..+. ||+|.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~---vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVM---IDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEE---EESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEE---EECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence 3568999999999999888754 222222 2222 2333322 23442 22 2344444455567 99998
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++. .......+|-++-|+|||||++++.+
T Consensus 132 ~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 132 MDC------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EET------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EcC------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 652 12345678889999999999999854
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.28 E-value=1.5e-05 Score=79.37 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=70.9
Q ss_pred cccccccCccccceeeeccCCC--eEEEEeecCCCCCChhHHHhhccccccccccccc------CCCC----cccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDIS--VWVMNVISIDSPDTLPIIYERGLFGIYHDWCESF------STYP----RTYDLLHA 711 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~--vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f------~typ----rtyDl~Ha 711 (796)
-.+|||+|||.|+|+.+|..+. |+-+-+.|.... .|+--+..|....- ..++ .+||+|-+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~--------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI--------AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC--------TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC--------CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence 4679999999999999998764 444444443211 13222333433310 0011 37999987
Q ss_pred ccccccc--------cCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceE-EEee-----ccCCceEE
Q 003776 712 DHLFSKI--------KKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEV-RMTY-----SKDKEGLL 776 (796)
Q Consensus 712 ~~~~s~~--------~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~-~~~~-----~~~~e~~l 776 (796)
+.-.... .....+..+|-++-|+|||||.||+.-. ......+..+++.. +.. .+.. ....|.++
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 6532211 1111234677888999999999998522 11223444444443 333 2221 23478899
Q ss_pred EEEec
Q 003776 777 CVEKS 781 (796)
Q Consensus 777 ~~~K~ 781 (796)
||++.
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 98763
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.28 E-value=4.7e-05 Score=77.42 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=61.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-cc-cccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FG-IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++..|..... +|+-+|.. ..+..+-++ |+ +- +..|... ++ ++.+||+|.+....
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFST 115 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCc
Confidence 346899999999999999987654 34444543 444444332 32 11 2233332 33 35789999854221
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
-.+...-.+..+|-++-|+|+|||.+|+.
T Consensus 116 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 12222224567899999999999999985
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.27 E-value=5.2e-05 Score=80.99 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=59.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc--------ccccccc------cccC--CCC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF--------GIYHDWC------ESFS--TYP 703 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--------g~~~~~c------e~f~--typ 703 (796)
..|||+|||.|+....+.....+ .|+=+|-. .-|..+-+| |+- -..+..+ +.++ ..+
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 56999999999877665544433 34445544 455555444 210 0111111 2221 124
Q ss_pred ccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 704 RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+||+|-+..++-...+.-.+..+|-+|-|+|||||+||+...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7999998765442111111356889999999999999998743
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.27 E-value=6.5e-05 Score=80.89 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=61.1
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhHH----Hhhcc---cccccccccccCCCC-ccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPII----YERGL---FGIYHDWCESFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~i----~eRGl---ig~~~~~ce~f~typ-rtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++..|...+. -|.-|=+ ...+..+ -..|+ |-+++.-.+.++ +| ..||+|.+..+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~---s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDM---SSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEES---STHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEECh---HHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCc
Confidence 35799999999999888876543 2333322 2223332 22354 333332223333 34 78999998766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..+...-.+..+|-++.|+|+|||.+|.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55444444567889999999999999983
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=74.73 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh----------------CCeEEEeCCh---hhHHHHHH------HHHH---Hc------
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD----------------RGVLTMSFAP---KDEHEAQV------QFAL---ER------ 433 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~----------------~~V~gvDiSp---~dl~~A~~------q~A~---er------ 433 (796)
.+..+|||||+|+|..+..++. .+|++++..| .++..+.. ..|+ ..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 3457999999999986665432 2689999877 44443310 0111 11
Q ss_pred ----------CCCeEEEEcCCCC-CCCCC----CceeEEEEcCCCccc-ccc--hHHHHHHHHhhcCCCcEEEE
Q 003776 434 ----------GIPAISAVMGTER-LPFPG----IVFDAVHCARCRVPW-HIE--GGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 434 ----------gl~~~~~v~d~e~-LPfpd----~SFDlVvss~~~l~w-~~d--~~~~L~Ei~RVLKPGG~fv~ 489 (796)
...+.+..+|+.. ||..+ ..||+|+.-.. .+- +++ ...+|..+.|+|||||.|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~f-sp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGF-APAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSS-CTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCC-CcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1223455566432 44322 27999998531 111 222 26899999999999999983
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.24 E-value=2.7e-05 Score=75.06 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=60.8
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc----cccccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL----FGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl----ig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-.+|||+|||.|.++.+|...+. -.|+-+|-. ..+..+-+ .|+ -=+..|+.+.++..+..||+|.++..
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 34799999999999988877653 234444443 33443322 232 12234555544555678999998766
Q ss_pred cccccCCcchHHHHHhhc--ccccCCcEEEEeccH
Q 003776 715 FSKIKKRCNLVAVVAEVD--RILRPEGKLIVRDDV 747 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~D--RiLRP~G~~i~rd~~ 747 (796)
|.. .....++-.+- |+|+|||++++....
T Consensus 110 ~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 110 YAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 531 22344455554 999999999996433
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=78.50 Aligned_cols=99 Identities=11% Similarity=0.221 Sum_probs=65.8
Q ss_pred cccccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhh----c----ccccccccccccCCCCccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYER----G----LFGIYHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eR----G----lig~~~~~ce~f~typrtyDl~H 710 (796)
.|.. ..|||+|||.|.++.+|... |-+ .++-.|-+..+..+-++ | +--+-+|..++ +|..||+|.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 238 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDIYL 238 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSEEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCEEE
Confidence 4566 89999999999999988653 211 22222333444443332 3 22234555553 467899999
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+.++|..|... ....+|-++-|+|+|||+++|.|
T Consensus 239 ~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 239 LSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 98888766422 22478999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=7.5e-05 Score=77.71 Aligned_cols=117 Identities=10% Similarity=0.030 Sum_probs=73.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-c----------------------cc-ccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-L----------------------FG-IYHDWCESF 699 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-l----------------------ig-~~~~~ce~f 699 (796)
..|||+|||.|.++..|.+... .|+-+|-. .-|..+..|- + |- +..|... +
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~-l 145 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD-L 145 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT-G
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc-C
Confidence 4699999999999999987754 45555554 4444443331 1 11 1122222 2
Q ss_pred CCC-CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEec---------c---HHHHHHHHHHHhcCCceEEE
Q 003776 700 STY-PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD---------D---VETINELESMVKGMQWEVRM 766 (796)
Q Consensus 700 ~ty-prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd---------~---~~~~~~~~~~~~~l~W~~~~ 766 (796)
+.- +.+||+|-+..+|..+ .......++-+|-|+|||||.++|-. . .-..+++..+... .|++..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 221 2689999987777654 23445678999999999999996421 0 0124567777765 487754
Q ss_pred e
Q 003776 767 T 767 (796)
Q Consensus 767 ~ 767 (796)
.
T Consensus 224 ~ 224 (252)
T 2gb4_A 224 L 224 (252)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.21 E-value=4.2e-05 Score=76.36 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=69.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-cc--------------cccccccccccCCCC----c
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-GL--------------FGIYHDWCESFSTYP----R 704 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gl--------------ig~~~~~ce~f~typ----r 704 (796)
..|||+|||.|.++..|.++.. .|+-+|-. .-|..+.+| ++ .+-..-.|--+-..| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 4699999999999999987643 34444444 445555554 11 011111122222222 6
Q ss_pred cccccccccccccccCCcchHHHHHhhcccccCCcEEE-Ee-ccH----------HHHHHHHHHHhcCCceEEE
Q 003776 705 TYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLI-VR-DDV----------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i-~r-d~~----------~~~~~~~~~~~~l~W~~~~ 766 (796)
+||+|-+..+|..+. ......+|-||-|+|||||+++ +. +.. -...+++.+... .|++..
T Consensus 101 ~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 101 HCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp SEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred CEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 899998776665432 2234567899999999999833 21 110 124567777776 777654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00017 Score=77.30 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHH--Hhhcc--ccccc--ccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPII--YERGL--FGIYH--DWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i--~eRGl--ig~~~--~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||.|+|+..|..+ .|.-+-+....++..+..+ -..|. |-++. |.. .++ +.+||+|.++..|+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~-~l~--~~~fD~V~sd~~~~ 159 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF-FIP--PERCDTLLCDIGES 159 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccc-cCC--cCCCCEEEECCccc
Confidence 357999999999999888776 3444333111111111000 00111 11111 221 122 46899999887764
Q ss_pred cccCCcch-----HHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNL-----VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~-----~~~l~E~DRiLRP~G~~i~r 744 (796)
.....+ ..+|-++-|+|||||.|++.
T Consensus 160 --~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 160 --SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred --cCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 111111 14688899999999999985
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=73.82 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=60.0
Q ss_pred cccccccCccccceeeeccCC--C-eEEEEeecCCC----CCChhHHHhh----cc---cccc-cc-cc-cccCCCCccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--S-VWVMNVISIDS----PDTLPIIYER----GL---FGIY-HD-WC-ESFSTYPRTY 706 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~-vwvmnv~p~~~----~~~l~~i~eR----Gl---ig~~-~~-~c-e~f~typrty 706 (796)
-..|||+|||.|.++..|... + .-|.-|-+... +..+..+-+| |+ |-++ .| +. +.++..+.+|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 457999999999999888764 2 44444444432 2356654433 32 2221 22 21 2233234799
Q ss_pred cccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 707 DLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|+|++.++|...... ..++-.+.++|+|||++++.
T Consensus 124 D~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 124 DRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp SEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEE
T ss_pred EEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEE
Confidence 999998888655432 33455556667779999995
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=76.37 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=83.9
Q ss_pred cccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHh----hccc----ccccccccccCCCCcccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYE----RGLF----GIYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGli----g~~~~~ce~f~typrtyDl~ 709 (796)
.+.....|||+|||.|.++.+|... .+-+..+ |-+..+..+-+ .|+- =+.+|..+++ |..||+|
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v 252 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV---ELAGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVV 252 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE---eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---CCCCCEE
Confidence 4566788999999999999988654 2322222 22223333322 2332 2334555544 4459999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEecc--H--H-----------------------HHHHHHHHHhcCCc
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD--V--E-----------------------TINELESMVKGMQW 762 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~--~--~-----------------------~~~~~~~~~~~l~W 762 (796)
.+.++|-.+... ....+|-++-|+|+|||+++|-+. . + ....++.++..--+
T Consensus 253 ~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 253 LLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EEeccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 988888765422 124689999999999999998765 2 1 23456667776677
Q ss_pred eEEEe-eccCCc-----eEEEEEecc
Q 003776 763 EVRMT-YSKDKE-----GLLCVEKSM 782 (796)
Q Consensus 763 ~~~~~-~~~~~e-----~~l~~~K~~ 782 (796)
+.... ...... .++.++|+=
T Consensus 332 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 332 ALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred ceEEEEECCCCcccCCcEEEEEEECc
Confidence 65433 222333 688888753
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.17 E-value=5.1e-05 Score=76.96 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=61.3
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccccccccccc-cC-CCC--ccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFGIYHDWCES-FS-TYP--RTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~~ce~-f~-typ--rtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++..|...-- +|+-+|.. ..+..+-++- +--+..|.... ++ .|+ ..||+|.+..+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 35699999999999988875422 34444443 4444444432 11122233221 00 111 24899998887
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|.... .-....+|-++-|+|+|||+++|.+
T Consensus 134 ~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIP-VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSC-GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 76553 2345678999999999999988864
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=4.9e-05 Score=79.54 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=56.3
Q ss_pred cccccCccccceeeeccCC----CeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCC-cccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RTYDLLHADHLF 715 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typ-rtyDl~Ha~~~~ 715 (796)
.|||+|||+|.++.+|... .+-| +-+|.. .-|..+-+| |+..-+.-.|.-+..+| ..||+|-+..++
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~~v---~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l 149 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNCKI---IAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 149 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSCEE---EEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCCEE---EEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence 5999999999998777542 2222 333333 444444333 43221111122122222 459999877665
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+. .-....+|-+|-|+|||||.|||.|
T Consensus 150 ~~~~-~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 150 QFLE-PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecC-chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 4332 1123467999999999999999974
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.13 E-value=3.7e-05 Score=72.95 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=56.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-c-ccccccccccCCCC---ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-F-GIYHDWCESFSTYP---RTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~~ce~f~typ---rtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|.....- |+-+|.. ..+..+-+ .|+ + =+..|+.+.++.++ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 46999999999999888765322 4444443 33333322 232 1 12233333233222 27999998877
Q ss_pred cccccCCcchHHHHHhhc--ccccCCcEEEEecc
Q 003776 715 FSKIKKRCNLVAVVAEVD--RILRPEGKLIVRDD 746 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~D--RiLRP~G~~i~rd~ 746 (796)
|. . ....++-.+- |+|+|||.+++...
T Consensus 120 ~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 120 YA--M---DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TT--S---CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Cc--h---hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 65 1 2334444444 99999999999643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.12 E-value=4.1e-05 Score=76.96 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-----cccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-----GLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-..|||+|||.|.++..|.... -.|+-++.. ..+..+-++ .+--+..|..+.++ .+.+||+|.+..++..
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHH
Confidence 3479999999999999887653 233334433 444444444 22223344444333 2468999998877754
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+. -++-|+|+|||.+++...
T Consensus 147 ~~---------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 147 LL---------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CC---------HHHHHTEEEEEEEEEEEC
T ss_pred HH---------HHHHHHcCCCcEEEEEEc
Confidence 32 368899999999998743
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00037 Score=75.15 Aligned_cols=100 Identities=24% Similarity=0.447 Sum_probs=64.9
Q ss_pred cccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHh----hcc----cccccccccccCCCCcccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYE----RGL----FGIYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGl----ig~~~~~ce~f~typrtyDl~ 709 (796)
.+.....|||+|||.|.++.+|... .+-+..+ |-+..+..+-+ .|+ -=+-+|+.+++ |..||+|
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v 253 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL---EMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADAI 253 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEe---cCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---CCCccEE
Confidence 4556778999999999999888643 2322222 22334443332 233 22345555544 4569999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+.++|..+... ....+|-++-|+|+|||+++|.+.
T Consensus 254 ~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 254 ILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEE
Confidence 988888665421 124679999999999999998653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00041 Score=75.02 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=64.2
Q ss_pred cccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHhh----cccc----cccccccccCCCCcccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYER----GLFG----IYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~~ce~f~typrtyDl~ 709 (796)
.+...+.|||+|||.|.++.+|... .+-+..+ |-+..+..+-++ |+-+ +-+|.... .+|. +|+|
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v 260 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL---NLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAV 260 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEE---ECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEE---ecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEE
Confidence 4567789999999999999998754 2222222 223344444333 5422 23444332 2233 4999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+.++|-.|.+. ....+|-++-|+|+|||+++|-+
T Consensus 261 ~~~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 261 LFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEechhccCCHH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 988888766431 24568999999999999998865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00015 Score=73.68 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHH----Hhhcccc---cccccccccC--CCCcccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPII----YERGLFG---IYHDWCESFS--TYPRTYDLLHA 711 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i----~eRGlig---~~~~~ce~f~--typrtyDl~Ha 711 (796)
-..|||+|||.|.++.+|... ..- |+-+|-. ..+..+ -..|+-. +.+|-.+.++ .-+.+||+|++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~---v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQD---FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCe---EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 356999999999999888643 222 3333333 333333 3345421 2233333222 12579999985
Q ss_pred cccccccc-CCc-----chHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhc-CCceE
Q 003776 712 DHLFSKIK-KRC-----NLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKG-MQWEV 764 (796)
Q Consensus 712 ~~~~s~~~-~rC-----~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~-l~W~~ 764 (796)
... ..|. .+. ....+|-++-|+|||||+|++. |...+...+..++.. -.|+.
T Consensus 112 ~~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 112 FFP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp ESC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eCC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 421 2221 111 1235899999999999999997 555566666665543 34543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0029 Score=67.19 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHh---------hCCeEEEeCChh--------------------------hHHHHHHHHHHHc
Q 003776 389 RTRVVLDVGCGVASFGGFLF---------DRGVLTMSFAPK--------------------------DEHEAQVQFALER 433 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La---------~~~V~gvDiSp~--------------------------dl~~A~~q~A~er 433 (796)
..+.||++|+..|..+..|+ .+.|+++|.... .+..++ ++..+.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar-~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVR-RNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHH-HHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHH-HHHHHc
Confidence 46799999999998776653 347999996421 122333 233344
Q ss_pred CC---CeEEEEcCC-CCCC-CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHH
Q 003776 434 GI---PAISAVMGT-ERLP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAM 508 (796)
Q Consensus 434 gl---~~~~~v~d~-e~LP-fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~l 508 (796)
|+ .+.++.+++ +.|| ++.++||+|+.-.. +......+|..+...|+|||++++... ...+....++..+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~---~~~~G~~~Av~Ef 258 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY---MMCPPCKDAVDEY 258 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC---TTCHHHHHHHHHH
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC---CCCHHHHHHHHHH
Confidence 54 256666664 4454 44578999998642 222345789999999999999997633 2234445555443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00016 Score=73.06 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=64.6
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhh-cccccccccccc--cCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYER-GLFGIYHDWCES--FSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~--f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||.|.|+..|... .|..+-+.|.--...+..+-.+ ++--+..|.... ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-- 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-- 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC--
Confidence 47999999999999988754 2333322111000112222222 333344455442 3333578999996433
Q ss_pred cccCCcch-HHHHHhhcccccCCcEEEEeccHH----------HHHHHHHHHhcCCceEEE
Q 003776 717 KIKKRCNL-VAVVAEVDRILRPEGKLIVRDDVE----------TINELESMVKGMQWEVRM 766 (796)
Q Consensus 717 ~~~~rC~~-~~~l~E~DRiLRP~G~~i~rd~~~----------~~~~~~~~~~~l~W~~~~ 766 (796)
.... ..++.++-|+|+|||++++.-... ++.+...++....|++.-
T Consensus 157 ----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 157 ----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp ----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred ----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 1222 345677999999999999953321 122223555555676644
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=76.72 Aligned_cols=135 Identities=16% Similarity=0.300 Sum_probs=83.0
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhcc----cccccccccccCCCCccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGL----FGIYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGl----ig~~~~~ce~f~typrtyDl 708 (796)
..|.....|+|+|||.|.++.+|.+. .+-+.. .|-+..+..+- +.|+ -=+-+|..+++| ..||+
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~ 271 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTL---LERPPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADV 271 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEE---EcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceE
Confidence 35677899999999999999988754 222221 22222333222 2343 223455555544 47999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------H------------HHHHHHHHHhcCCceE
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------E------------TINELESMVKGMQWEV 764 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~------------~~~~~~~~~~~l~W~~ 764 (796)
|.+.++|..|... ....+|-++-|+|+|||+++|-+.. + ....++.+++.--|+.
T Consensus 272 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 9988888665421 1235799999999999999985311 0 1345666777777776
Q ss_pred EEeec--cCCceEEEEEe
Q 003776 765 RMTYS--KDKEGLLCVEK 780 (796)
Q Consensus 765 ~~~~~--~~~e~~l~~~K 780 (796)
.-... .....++.++|
T Consensus 351 ~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 351 ERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEECSSSSEEEEEEEE
T ss_pred EEEEECCCCCcEEEEEEe
Confidence 54322 33445666655
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00018 Score=72.28 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=69.3
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHh-----hcccccccccccc--cCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYE-----RGLFGIYHDWCES--FSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~e-----RGlig~~~~~ce~--f~typrtyDl~Ha~ 712 (796)
..|||+|||.|.++..|.+. .|..+-+.| ..+..+.+ .++.-+..|.... +...+.+||+|.++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 47999999999999888643 343332222 11111111 1232233444442 23345689999855
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccH---------H--HHHHHHHHHhcCCceEEEe-ec---cCCceEEE
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV---------E--TINELESMVKGMQWEVRMT-YS---KDKEGLLC 777 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~---------~--~~~~~~~~~~~l~W~~~~~-~~---~~~e~~l~ 777 (796)
.. ..-....+|-++-|+|+|||++++.-.. . ....++.+ ..- ++.... +. ....-+++
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~ 223 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFV 223 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEE
Confidence 43 1112234589999999999999984111 1 12456666 333 776533 11 12234677
Q ss_pred EEec
Q 003776 778 VEKS 781 (796)
Q Consensus 778 ~~K~ 781 (796)
++|+
T Consensus 224 ~~~~ 227 (227)
T 1g8a_A 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.03 E-value=8.3e-05 Score=72.69 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cc-cccccccccCCC-Ccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FG-IYHDWCESFSTY-PRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~~ce~f~ty-prtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++.++...+.. .|+-+|.. ..+..+-+ .|+ +- +..|+.+..+.+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 46999999999999866655431 22333332 33333222 243 11 223333322223 4789999977655
Q ss_pred ccccCCcchHHHHHhhcc--cccCCcEEEEecc
Q 003776 716 SKIKKRCNLVAVVAEVDR--ILRPEGKLIVRDD 746 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DR--iLRP~G~~i~rd~ 746 (796)
... .-.+..+|-++-| +|+|||++++...
T Consensus 124 ~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 124 NVD--SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred Ccc--hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 432 1346678888888 9999999999643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=8.5e-05 Score=75.06 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=61.0
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc---cc-cccccccccCCC--Cccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL---FG-IYHDWCESFSTY--PRTYDLLH 710 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~~ce~f~ty--prtyDl~H 710 (796)
.-+.|||+|||.|.++.+|... |- -.|+-++.. ..+..+-++ |+ |- +..|..+.++.. +.+||+|.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 3468999999999998888653 10 133334443 444444443 43 22 233444433333 47899998
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++..+. ....+|-++-|+|||||.+++.+
T Consensus 132 ~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 665433 45678889999999999999964
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00025 Score=75.41 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=62.2
Q ss_pred cccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHh----hcccc----cccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYE----RGLFG----IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGlig----~~~~~ce~f~typrtyDl~Ha 711 (796)
..-..|||+|||.|.++.+|... .. .++-.|-+..+..+-+ .|+-+ +.+|.... .+|..||+|.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEE
Confidence 56678999999999999988754 22 2222232222333222 23322 23344331 34556999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.++|..+... ....+|-++-|+|+|||+++|-
T Consensus 239 ~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 239 PNFLHHFDVA-TCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhccCCHH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 8888766321 2357899999999999999885
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00017 Score=73.32 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hcccc----cccccccccCCCC-----cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLFG----IYHDWCESFSTYP-----RT 705 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~~ce~f~typ-----rt 705 (796)
.-++|||+|||.|.++.+|... ..-| +-++.. ..+.++-+ .|+-. +..+..+.++.+| .+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v---~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQI---IACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEE---EEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 3468999999999998888754 1222 222222 33333322 24321 1223333233222 68
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHHHHH----HhcCCceEEEeec
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINELESM----VKGMQWEVRMTYS 769 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~~~~----~~~l~W~~~~~~~ 769 (796)
||+|.++.. .-....++-++-|+|||||++|+.+.. .....++++ ...-++...+..
T Consensus 149 fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp- 221 (232)
T 3cbg_A 149 FDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP- 221 (232)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC-
T ss_pred cCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE-
Confidence 999986543 123456788888999999999985211 122333333 344566665542
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
-.+++.+++|.
T Consensus 222 -~~dG~~~~~~~ 232 (232)
T 3cbg_A 222 -LGDGMTLALKK 232 (232)
T ss_dssp -SBTCEEEEEEC
T ss_pred -cCCeEEEEEeC
Confidence 23578888874
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=62.31 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCEEEEECCCCc-hhHHHHhh-C--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC--CceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVA-SFGGFLFD-R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG--IVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG-~~a~~La~-~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd--~SFDlVvss~~~ 463 (796)
+.+|||||||.| ..+.+|++ + .|+++|+++..+. +...|..+ |..+ ..||+|++.+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirP- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRP- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESC-
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCC-
Confidence 579999999999 59999986 5 6999999986542 34444433 4332 37999999763
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
..++...|.++.+.+ |.-|+|. ++..+
T Consensus 99 ---P~El~~~i~~lA~~v--~adliI~-pL~~E 125 (153)
T 2k4m_A 99 ---PAEIHSSLMRVADAV--GARLIIK-PLTGE 125 (153)
T ss_dssp ---CTTTHHHHHHHHHHH--TCEEEEE-CBTTB
T ss_pred ---CHHHHHHHHHHHHHc--CCCEEEE-cCCCC
Confidence 346677777777654 5567765 54444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00022 Score=73.76 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=55.8
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhh-cccccccccccccC--CCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESFS--TYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f~--typrtyDl~Ha~~~~s 716 (796)
-.|||+|||.|+|++.|.+. .|+.+-+.|.--..-+..+-.| .+..+.+|-..+.. ..+..||+|.++..+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 46999999999999887653 3444433221100112223333 35555666555421 224679998866432
Q ss_pred cccCCcchHHHHH-hhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVA-EVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~-E~DRiLRP~G~~i~r 744 (796)
.....+|+ .+.|+|||||.+++.
T Consensus 157 -----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 -----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp -----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 34444554 566799999999985
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00015 Score=78.45 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=58.2
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhHHH----hhcc---cccccccccccCCCC-ccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPIIY----ERGL---FGIYHDWCESFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~i~----eRGl---ig~~~~~ce~f~typ-rtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++..|...+. -|.-|=+. ..+..+- ..|+ |-+++.=.+.++ +| ..||+|-+..+
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS---EILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWM 140 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCC
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChH---HHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCc
Confidence 35799999999999888876642 23333332 2233322 2343 222322122333 34 78999997764
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
...+...-.+..+|-++.|+|+|||.+|
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3333333345678999999999999998
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00014 Score=78.01 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=70.0
Q ss_pred ccccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhh----ccccccccccc---ccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCE---SFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce---~f~typrtyDl~Ha~ 712 (796)
.=..|||+|||.|+++|.++.+ .. .|+-+|-. ..+..+-++ |+ .-..-.|. .++ +.+||+|...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~ 195 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVA 195 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEEC
T ss_pred CcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEEC
Confidence 4467999999999988665322 22 23333332 444444333 55 21111121 233 4899999855
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccHHHHH---H-H-HHHHhcCCceEEEeecc--C-CceEEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETIN---E-L-ESMVKGMQWEVRMTYSK--D-KEGLLCVEK 780 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~---~-~-~~~~~~l~W~~~~~~~~--~-~e~~l~~~K 780 (796)
.+ --....++-|+-|+|||||.+++++-...-. . + ..+.+ .|+.....+- + ...+++++|
T Consensus 196 a~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k 263 (298)
T 3fpf_A 196 AL------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFK 263 (298)
T ss_dssp TT------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEE
T ss_pred CC------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEc
Confidence 43 1235678999999999999999986332100 0 0 11222 5766654322 1 355777766
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00017 Score=71.84 Aligned_cols=125 Identities=8% Similarity=0.063 Sum_probs=70.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc----ccc-ccccccccCCC-Ccc-ccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL----FGI-YHDWCESFSTY-PRT-YDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl----ig~-~~~~ce~f~ty-prt-yDl~Ha~ 712 (796)
..|||+|||+|.|+..++.... -.|+-+|.. ..+..+-+ .|+ +-+ ..|.....+.. +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 3699999999999887554432 134444444 34443332 233 111 22333322322 468 9999977
Q ss_pred cccccccCCcchHHHHHhh--cccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEV--DRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~--DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
..|. .-.+..+|-++ -|+|+|||.+++...... +.. ..-.|.......-+...+.+++|
T Consensus 133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~--~~~~~~~~~~~~yG~~~~~~~~~ 193 (201)
T 2ift_A 133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEKDK---PLI--TPENWTLLKEKTTGIVSYRLYQN 193 (201)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCCC---Ccc--ccchhHHHHHHhcCCEEEEEEec
Confidence 6653 12345667777 789999999999755433 111 11347655433334455666655
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=96.93 E-value=8.4e-05 Score=78.10 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=55.7
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCC--C-CChhH-HHhhccccc--ccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDS--P-DTLPI-IYERGLFGI--YHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~--~-~~l~~-i~eRGlig~--~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||.|+|+..|..+ .|.-+-+.|... + ..+.. .+..++.-+ -.|.. .|+ +.+||+|-++..+.
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~~ 151 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGES 151 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCC
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCccc
Confidence 357999999999998887764 566666666311 0 10000 000022112 22332 244 58999999775421
Q ss_pred cccCCcch-----HHHHHhhcccccCCc--EEEEe
Q 003776 717 KIKKRCNL-----VAVVAEVDRILRPEG--KLIVR 744 (796)
Q Consensus 717 ~~~~rC~~-----~~~l~E~DRiLRP~G--~~i~r 744 (796)
...-.+ ..+|-++.|+|+||| .|++.
T Consensus 152 --~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k 184 (265)
T 2oxt_A 152 --SPKWSVESERTIKILELLEKWKVKNPSADFVVK 184 (265)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --CCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 111111 126788999999999 99985
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0002 Score=75.25 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=62.4
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cccccccccc-c---CCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGIYHDWCES-F---STYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~~ce~-f---~typrtyDl~Ha~~~~s~ 717 (796)
-..|||+|||.|.++..|..+.- .|+-+|.. .-|.++-++-- ..+-.+|... + ...+.+||+|-++.+|..
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred cCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 35799999999999999877642 34444444 45555544421 0122333221 1 122468999999887765
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+. +-.+..+|-+|-|+| |||.++++
T Consensus 123 ~~-~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 123 FT-TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp SC-HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CC-HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 43 123566899999999 99999997
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0067 Score=69.77 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=76.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----------------CCeEEEeCChhhHHHHHHHHHHHc
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------------RGVLTMSFAPKDEHEAQVQFALER 433 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvDiSp~dl~~A~~q~A~er 433 (796)
...+++|.+.+.. ..+.+|+|-.||+|.|.....+ ..+.|+|+.+.....|+..... +
T Consensus 203 ~~Vv~lmv~l~~p----~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l-h 277 (530)
T 3ufb_A 203 RPVVRFMVEVMDP----QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL-H 277 (530)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhhcc----CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh-c
Confidence 4556777776643 4567999999999998765432 2689999999887777655554 3
Q ss_pred CCC-eEEEEcCCCCCCC----CCCceeEEEEcCCCcc-ccc-------------ch-HHHHHHHHhhcC-------CCcE
Q 003776 434 GIP-AISAVMGTERLPF----PGIVFDAVHCARCRVP-WHI-------------EG-GKLLLELNRVLR-------PGGF 486 (796)
Q Consensus 434 gl~-~~~~v~d~e~LPf----pd~SFDlVvss~~~l~-w~~-------------d~-~~~L~Ei~RVLK-------PGG~ 486 (796)
|+. ..+...+....|+ ....||+|+++..+-. |.. +. ..++..+.+.|| |||+
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr 357 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR 357 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence 443 3444555444332 2357999999874311 100 11 245666778886 7999
Q ss_pred EEEEeC
Q 003776 487 FIWSAT 492 (796)
Q Consensus 487 fv~s~~ 492 (796)
+.+..+
T Consensus 358 ~avVlP 363 (530)
T 3ufb_A 358 AAVVVP 363 (530)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 988755
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.89 E-value=8.1e-05 Score=73.67 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=57.1
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc--cc-cccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL--FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.+++.|..... +|+-+|-. ..+..+-++ |+ +- +..|+.+.++. ..+||+|.++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 152 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA-RAPFDAIIVTAA 152 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEESSB
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-CCCccEEEEccc
Confidence 345799999999999998876532 23333333 344444333 33 11 22344443322 468999998877
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+.. ++-|+|+|||++++.-
T Consensus 153 ~~~~~~---------~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 153 PPEIPT---------ALMTQLDEGGILVLPV 174 (210)
T ss_dssp CSSCCT---------HHHHTEEEEEEEEEEE
T ss_pred hhhhhH---------HHHHhcccCcEEEEEE
Confidence 754433 5679999999999864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00018 Score=70.10 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.5
Q ss_pred ccccccCccccceeeeccCC-------------CeEEEEeecCCCCCChhHHHhhcccccccccccc-c-----CCC-Cc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-------------SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCES-F-----STY-PR 704 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-------------~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~-f-----~ty-pr 704 (796)
.+|||+|||.|.++.+|... .|+.+-+.|......+.++ . -.|+... + ..+ .+
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcCCC
Confidence 57999999999999888653 2444433332111111111 0 1122111 0 012 25
Q ss_pred cccccccccccccccC--------CcchHHHHHhhcccccCCcEEEEe
Q 003776 705 TYDLLHADHLFSKIKK--------RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~--------rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+||+|-++..+..... ...+..+|-++-|+|||||.+++.
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8999987654332111 011246788999999999999997
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0041 Score=65.17 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-cCCCeEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-RGIPAISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~ 440 (796)
|+..+..-+..|.+.. .+ +++.+||||||+.|.++.+.+++ .|.|..++. +++..- .... .|+....+
T Consensus 54 yRSRAayKL~EIdeK~-li---kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~-D~~~~P--~~~~~~Gv~~i~~ 126 (269)
T 2px2_A 54 PVSRGTAKLRWLVERR-FV---QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG-PGHEEP--MLMQSYGWNIVTM 126 (269)
T ss_dssp CSSTHHHHHHHHHHTT-SC---CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCS-TTSCCC--CCCCSTTGGGEEE
T ss_pred cccHHHHHHHHHHHcC-CC---CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcc-ccccCC--CcccCCCceEEEe
Confidence 5555555566676664 32 46899999999999999999886 234555543 210000 0000 12222333
Q ss_pred E-c-CCCCCCCCCCceeEEEEcCCCc--ccccchH---HHHHHHHhhcCCCc-EEEEEeC
Q 003776 441 V-M-GTERLPFPGIVFDAVHCARCRV--PWHIEGG---KLLLELNRVLRPGG-FFIWSAT 492 (796)
Q Consensus 441 v-~-d~e~LPfpd~SFDlVvss~~~l--~w~~d~~---~~L~Ei~RVLKPGG-~fv~s~~ 492 (796)
. . |...++ ...+|+|+|-.+-- ++..|.. .+|.-+.++|+||| -|++-+.
T Consensus 127 ~~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 127 KSGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp ECSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred eccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 3 3 554433 45799999965211 1111322 24555669999999 8987643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00046 Score=70.86 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=66.2
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----------hcc--c-ccccccccccC--CCCcccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----------RGL--F-GIYHDWCESFS--TYPRTYD 707 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----------RGl--i-g~~~~~ce~f~--typrtyD 707 (796)
..|||+|||.|.|+.+|... |-+ +|+-+|-. .-|.++-+ .|+ | =+..|....++ ..+.+||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 45999999999999988654 211 22223332 22322221 132 1 12233332233 2257999
Q ss_pred ccccccccc-cc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcC-CceEE
Q 003776 708 LLHADHLFS-KI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGM-QWEVR 765 (796)
Q Consensus 708 l~Ha~~~~s-~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l-~W~~~ 765 (796)
+|+.. |. .| ..|.....+|-++-|+|+|||.|++. |...+...+...+... .|...
T Consensus 126 ~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 126 KMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred EEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 98732 22 22 23334467899999999999999985 6666666666655443 35443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00012 Score=70.49 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=55.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcc---cc-cccccccccCCC---Cccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGL---FG-IYHDWCESFSTY---PRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGl---ig-~~~~~ce~f~ty---prtyDl~Ha~ 712 (796)
.+|||+|||.|.++.+|...+.. .|+-+|-. ..+..+- ..|+ +- +..|+.+.++.. +..||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 47999999999998877655421 23333332 2333222 2233 22 223454433211 4689999987
Q ss_pred cccccccCCcchHHHHHhh--cccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEV--DRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~--DRiLRP~G~~i~rd 745 (796)
..|.. -....++-.+ -|+|+|||++++..
T Consensus 124 ~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 124 PPYAK----QEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp CCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCCc----hhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 66542 1233444444 99999999999963
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00066 Score=67.95 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hcc---ccc-ccccccccCCCC-----cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGL---FGI-YHDWCESFSTYP-----RT 705 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~-~~~~ce~f~typ-----rt 705 (796)
.-++|||+|||.|.++.+|... ..-| +-++.. ..+.++-+ .|+ |-+ ..|..+.++..+ .+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRV---VTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEE---EEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEE---EEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 4568999999999999888763 2222 222222 23333322 243 111 123222222222 67
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc------------HHHHHHHHH----HHhcCCceEEEeec
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD------------VETINELES----MVKGMQWEVRMTYS 769 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~------------~~~~~~~~~----~~~~l~W~~~~~~~ 769 (796)
||+|.++.. ......++-++-|+|||||++++.+. ......+++ +...-++.+.+..
T Consensus 146 ~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp- 218 (229)
T 2avd_A 146 FDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP- 218 (229)
T ss_dssp EEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC-
T ss_pred ccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe-
Confidence 999986543 33445678888899999999999421 112223333 3445556665442
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
-..++++++|.
T Consensus 219 -~~dGl~~~~k~ 229 (229)
T 2avd_A 219 -LGDGLTLAFKI 229 (229)
T ss_dssp -STTCEEEEEEC
T ss_pred -cCCceEEEEEC
Confidence 24678888873
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00018 Score=74.08 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=56.5
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-..|||+|||.|.++..|... .. .|+-+|.. ..+..+-+++ +.=+..|+ +.++.-+.+||+|.+...
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~---- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA---- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC----
Confidence 457999999999999888764 22 22233333 4555666655 11122233 233433479999996443
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
...|-++-|+|||||.+++..
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE
Confidence 124789999999999999863
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00038 Score=75.51 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=60.1
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhHHHh----hcc---ccccc-ccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPIIYE----RGL---FGIYH-DWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~i~e----RGl---ig~~~-~~ce~f~typrtyDl~Ha~~~ 714 (796)
=..|||+|||.|.++..+...+. -|.-|-+. ..+..+-+ .|+ |-+++ |.. .++ .|..||+|-+..+
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s---~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~-~~~~~D~Ivs~~~ 125 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAS---TMAQHAEVLVKSNNLTDRIVVIPGKVE-EVS-LPEQVDIIISEPM 125 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTT-TCC-CSSCEEEEEECCC
T ss_pred cCEEEEcCCCccHHHHHHHhCCCCEEEEECCH---HHHHHHHHHHHHcCCCCcEEEEEcchh-hCC-CCCceeEEEEeCc
Confidence 35799999999999888876643 34444432 23333222 244 22222 222 222 3578999998877
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+..+... .+...|.++-|+|+|||.+++.
T Consensus 126 ~~~~~~~-~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 126 GYMLFNE-RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTBTTT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred hhcCChH-HHHHHHHHHHhhcCCCeEEEEe
Confidence 6654422 3456678999999999999853
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00028 Score=72.23 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=63.8
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------------ccc---ccccccccccCC-C-Cc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------------GLF---GIYHDWCESFST-Y-PR 704 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------------Gli---g~~~~~ce~f~t-y-pr 704 (796)
-..|||+|||.|+|+.+|... +- .+|+-+|.. .-+..+-++ |+- -+..|..+.++. + +.
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 356999999999999888653 11 123333333 233333221 431 122333332331 2 35
Q ss_pred cccccccccccc-cc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCC
Q 003776 705 TYDLLHADHLFS-KI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQ 761 (796)
Q Consensus 705 tyDl~Ha~~~~s-~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~ 761 (796)
+||.|.. +|. .| ..|-....+|-++-|+|+|||++++. |.....+.+...+....
T Consensus 128 ~~d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 128 QLSKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp CEEEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred ccCEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 7777752 122 11 11222257899999999999999984 66666666665554433
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00017 Score=78.59 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=62.4
Q ss_pred ccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHh-hcccccccccccccCCCCcccccccccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+...+.|||+|||.|.++.+|..+ .+-+..+= -+..+..+-+ .++--+.+|..+++ |. ||+|.+.++|-.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D---~~~~~~~a~~~~~v~~~~~d~~~~~---~~-~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFD---LPQVIENAPPLSGIEHVGGDMFASV---PQ-GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEE---CHHHHTTCCCCTTEEEEECCTTTCC---CC-EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeC---hHHHHHhhhhcCCCEEEeCCcccCC---CC-CCEEEEeccccc
Confidence 556789999999999999988654 23222221 1111111100 13333445665544 44 999999888876
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|... ....+|-++-|+|||||+++|.|
T Consensus 280 ~~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 WSDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 6432 22368999999999999999863
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00049 Score=72.71 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=79.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCccc---cccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTY---DLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrty---Dl~Ha~ 712 (796)
..|||+|||.|.++.+|...|-+ +|+-+|-. ..|.++-+ .|+ +- +..||.++++ ..| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEEEc
Confidence 46999999999999988765322 23333433 34444332 244 22 3456666554 578 999876
Q ss_pred cccccc----------cC------CcchHHHHHhhc-ccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccCCceE
Q 003776 713 HLFSKI----------KK------RCNLVAVVAEVD-RILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGL 775 (796)
Q Consensus 713 ~~~s~~----------~~------rC~~~~~l~E~D-RiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~ 775 (796)
--+... .. .+.-..++-++= |.|+|||++++.-....-..+..+.+.. ....|-.+.+++
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~g~~R~ 276 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSAGKYRF 276 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTTSSEEE
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccCCCceE
Confidence 222211 11 111125778888 9999999999975555556677776655 334455667888
Q ss_pred EEEEec
Q 003776 776 LCVEKS 781 (796)
Q Consensus 776 l~~~K~ 781 (796)
+++.++
T Consensus 277 ~~~~~k 282 (284)
T 1nv8_A 277 LLLNRR 282 (284)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888765
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=4.7e-05 Score=77.15 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-..|||+|||.|+++.+|..... .|+-+|-. ..+..+-+ .|+ +- +..|+.. ++ .+.+||+|.++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPP 153 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCC
T ss_pred CCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCC
Confidence 35799999999999999987652 33334433 33333322 233 21 2234433 22 2479999998877
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|...... ...+.++-|+|+|||++|+..
T Consensus 154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 7654322 124668999999999988753
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00049 Score=69.90 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=72.5
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----cccc---c-ccc----------------
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GLFG---I-YHD---------------- 694 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~-~~~---------------- 694 (796)
.-.+|||+|||.|.++..|... .. .|+-++.. ..+..+-++ |+-. + ..|
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 3467999999999999888643 12 22222222 233333222 3311 1 112
Q ss_pred cccccCCCC-ccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc------------HHHHHH----HHHHH
Q 003776 695 WCESFSTYP-RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD------------VETINE----LESMV 757 (796)
Q Consensus 695 ~ce~f~typ-rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~------------~~~~~~----~~~~~ 757 (796)
|-..|+. + .+||+|.++... -.+..+|-++-|+|||||++++.+. ...... .+.+.
T Consensus 137 ~~~~f~~-~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (239)
T 2hnk_A 137 WASDFAF-GPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVY 209 (239)
T ss_dssp GGTTTCC-STTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccC-CCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHh
Confidence 2222221 2 679999865422 1344678889999999999999641 112222 33344
Q ss_pred hcCCceEEEeeccCCceEEEEEecc
Q 003776 758 KGMQWEVRMTYSKDKEGLLCVEKSM 782 (796)
Q Consensus 758 ~~l~W~~~~~~~~~~e~~l~~~K~~ 782 (796)
..-++.+.... -..++++++|+.
T Consensus 210 ~~~~~~~~~~p--~~~g~~~~~~~~ 232 (239)
T 2hnk_A 210 NDSLVDVSLVP--IADGVSLVRKRL 232 (239)
T ss_dssp HCTTEEEEEEC--STTCEEEEEECC
T ss_pred hCCCeEEEEEE--cCCceEeeeehh
Confidence 55567665542 245799998875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00053 Score=69.66 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=72.0
Q ss_pred cccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH----Hhhccc----cc-ccccccccCCC-Ccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII----YERGLF----GI-YHDWCESFSTY-PRTYDLLHA 711 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i----~eRGli----g~-~~~~ce~f~ty-prtyDl~Ha 711 (796)
.|||+|||.|.++.+|... .--| +-++.. ..+.++ -..|+- -+ ..|..+.++.+ +.+||+|..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTL---TCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEE---EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEE---EEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 8999999999988877642 2222 222322 222222 222332 11 22233334444 478999975
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHHHHHHhcCCceEEEe--eccCCceEEE
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINELESMVKGMQWEVRMT--YSKDKEGLLC 777 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~~~~~~~l~W~~~~~--~~~~~e~~l~ 777 (796)
+.-. -....++-++-|+|||||++++.+.. .....++++...+++.-++. --.-.+++++
T Consensus 136 d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~ 209 (221)
T 3dr5_A 136 QVSP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTV 209 (221)
T ss_dssp CCCT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEE
T ss_pred cCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHH
Confidence 5422 23445677888999999999984221 12334555555555542211 1123568999
Q ss_pred EEecc
Q 003776 778 VEKSM 782 (796)
Q Consensus 778 ~~K~~ 782 (796)
++|..
T Consensus 210 ~~~~~ 214 (221)
T 3dr5_A 210 VTKAL 214 (221)
T ss_dssp EEECC
T ss_pred HHHHH
Confidence 99875
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0047 Score=67.78 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-------CeEEEEcCCCCCC-CCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-------PAISAVMGTERLP-FPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-------~~~~~v~d~e~LP-fpd~SFD 455 (796)
.++.+|||+.+|.|.=+.+|+.. .|+++|+++.-+...+ +.+...++ .+.....|...++ +..+.||
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 46889999999999988888764 6999999987665554 33333332 3445555655543 3457899
Q ss_pred EEEEc-CCCc------------ccccch----------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 456 AVHCA-RCRV------------PWHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 456 lVvss-~~~l------------~w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
.|++- .|.- .|...+ ..+|....+.|||||+++.++.....
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 99962 2211 111111 25678889999999999999776554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0004 Score=70.88 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=68.5
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----ccc----ccccccccccCCCCccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~H 710 (796)
.-..|||+|||.|.++.+|... ..-| +-+|-. ..+..+-++ |+- -+..|+.+.|+ +.+||+|-
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v---~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~v~ 167 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRV---VSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--EENVDHVI 167 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEE---EEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--CCSEEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEE---EEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--CCCcCEEE
Confidence 3457999999999999988764 2222 223433 444444443 542 24556776665 36899987
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCC
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQ 761 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~ 761 (796)
++ --....+|-++-|+|+|||.+++.. ..+.+.++...++...
T Consensus 168 ~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 168 LD--------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EC--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred EC--------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 42 1223457899999999999999864 3445556666665554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00074 Score=69.68 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=55.2
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH----Hhhcc---cccc-cccccccCCC------Cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII----YERGL---FGIY-HDWCESFSTY------PR 704 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i----~eRGl---ig~~-~~~ce~f~ty------pr 704 (796)
.-++|||+|||.|.++..|... ..- |+-+|.. ..+.++ -..|+ |-++ .|..+.++.+ +.
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~---v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGK---ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCE---EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 4578999999999998877542 222 2222222 223222 22344 2122 2333333333 47
Q ss_pred cccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 705 TYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+||+|.++.- .-....++-++-|+|||||++++.
T Consensus 156 ~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 156 SYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp CBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred CEEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 8999986542 113456778888999999999985
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00037 Score=71.07 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=51.4
Q ss_pred cccccccCccccceeeecc--CCCeEEEEeecCCCC-CCh-hHH---H----hhccccc--ccccccccCC-CCcccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMK--DISVWVMNVISIDSP-DTL-PII---Y----ERGLFGI--YHDWCESFST-YPRTYDLL 709 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~--~~~vwvmnv~p~~~~-~~l-~~i---~----eRGlig~--~~~~ce~f~t-yprtyDl~ 709 (796)
=+.|||+|||.|.++.+|. ....- |+-+|.. ..+ .++ - .+|+-.+ .+.=.+.+|. +...+|.+
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~---v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTF---YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEE---EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 3569999999999999987 33333 3333433 333 222 2 3454221 1111123332 11344444
Q ss_pred ccccccccc--cCCcchHHHHHhhcccccCCcEEEE
Q 003776 710 HADHLFSKI--KKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 710 Ha~~~~s~~--~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
|....+... ..+-....+|-||-|+|||||.++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 432211100 0011224679999999999999999
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00074 Score=68.27 Aligned_cols=90 Identities=11% Similarity=0.215 Sum_probs=51.3
Q ss_pred ccccccCccccceeeeccCC-C---eEEEEeecCCCCCChhHHHhh-----ccccccccccccc--CCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-S---VWVMNVISIDSPDTLPIIYER-----GLFGIYHDWCESF--STYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~---vwvmnv~p~~~~~~l~~i~eR-----Glig~~~~~ce~f--~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++..|... + |..+-+.| ..+..+-++ .+.-+..|...+. ..++.+||+|..+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH----HHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 46999999999999888654 2 33333222 222222111 1222333443321 1224689997611
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+ ...-....+|-++-|+|||||++++
T Consensus 151 ~----~~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 151 V----AQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp C----CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred c----CChhHHHHHHHHHHHhCCCCcEEEE
Confidence 1 1111135668999999999999999
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00087 Score=67.69 Aligned_cols=106 Identities=9% Similarity=0.116 Sum_probs=67.7
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc---c-cccccccccc-CCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL---F-GIYHDWCESF-STYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~~ce~f-~typrtyDl~Ha~~ 713 (796)
-.+|||+|||.|.++.+|.... ..|+-+|-. ..+..+-++ |+ + -+..|+.+.+ + +..||+|-++
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~- 165 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD- 165 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC-
T ss_pred CCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC-
Confidence 3479999999999998887652 244555544 455555444 33 1 1234454443 2 3689998742
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCce
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWE 763 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~ 763 (796)
--....+|-++-|+|||||.+++... .+.+..+..+++.. |.
T Consensus 166 -------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 166 -------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp -------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred -------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 11334668889999999999998755 44556666665554 54
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00083 Score=69.69 Aligned_cols=118 Identities=8% Similarity=0.083 Sum_probs=68.6
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh-------hcc---cccc-cccccccC-----CC-Cc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE-------RGL---FGIY-HDWCESFS-----TY-PR 704 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e-------RGl---ig~~-~~~ce~f~-----ty-pr 704 (796)
-..|||+|||.|.++..|..+ |- ..|+-++-. ..+.++-+ .|+ |-++ .|+.+..+ .+ +.
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 347999999999998777644 11 123333332 22222221 232 2222 23333211 12 47
Q ss_pred cccccccccccccc---------------cCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceE
Q 003776 705 TYDLLHADHLFSKI---------------KKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEV 764 (796)
Q Consensus 705 tyDl~Ha~~~~s~~---------------~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~ 764 (796)
+||+|-++--|... ...+.+..+|-++-|+|+|||++++--..+.+..+..+++.. |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 89999987443321 234667889999999999999998865555666677766653 653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0005 Score=68.44 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=69.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cc-cccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FG-IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||.|.++..|..+.. -.|+-+|.. ..+..+-+ .|+ |- +..|..+.++..+.+||+|-++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 4699999999999887554432 134445544 33443322 233 21 22344333344356899998766543
Q ss_pred cccCCcchHHHHHhh--cccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 717 KIKKRCNLVAVVAEV--DRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~--DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
. -....++-++ -|+|+|||.+++....... +.. ..-.|.......-+...+.+++|
T Consensus 134 ~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~ 191 (202)
T 2fpo_A 134 R----GLLEETINLLEDNGWLADEALIYVESEVENG--LPT--VPANWSLHREKVAGQVAYRLYQR 191 (202)
T ss_dssp T----TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred C----CcHHHHHHHHHhcCccCCCcEEEEEECCCcc--ccc--cCCcceEEeeeccCCEEEEEEEE
Confidence 1 1234455555 4679999999997554321 000 11357655443334555666654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00013 Score=73.15 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=52.3
Q ss_pred ccccccCccccceeeeccCC--C-eEEEEeecCCCC-CChhHHHhh----c--------ccccccccccccCCCCccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S-VWVMNVISIDSP-DTLPIIYER----G--------LFGIYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~-vwvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~~ce~f~typrtyDl 708 (796)
..|||+|||.|.+++.|... + .-|. -+|.. ..+..+-++ | +--+..|....++ -+..||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~---~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTGKVI---GIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEE---EEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCcEEE---EEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 47999999999999888643 1 2222 22322 233333221 1 1122334443322 1468999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
||++..+. .++-++-|+|||||.+++.-
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEEE
Confidence 99776553 23457779999999999863
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00066 Score=68.98 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh-----cc---cccccccccc-cCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER-----GL---FGIYHDWCES-FSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Gl---ig~~~~~ce~-f~typrtyDl~ 709 (796)
.-.+|||+|||.|.++.+|... ..- |+-+|.. ..+..+-++ |. --+..|..+. |+ +.+||+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~---v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGL---VESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--EAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--TTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--CCCcCEE
Confidence 3457999999999999888654 222 2223332 344444333 41 1123344443 33 2689998
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceE
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEV 764 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~ 764 (796)
-++ --....+|-++-|+|+|||++++.... ..+.++...++...|..
T Consensus 171 ~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 171 ALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 842 112346789999999999999987543 34555555555555553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00088 Score=68.48 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=72.1
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH----Hhhccc---cc-ccccccccCCC------Cc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII----YERGLF---GI-YHDWCESFSTY------PR 704 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i----~eRGli---g~-~~~~ce~f~ty------pr 704 (796)
.-++|||+|||.|..+.+|... .-- |+-++-. ..+.++ -..|+- -+ ..|..+.++.+ +.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~---v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGK---ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCE---EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 4578999999999988777532 111 2222222 223322 223542 12 23444433333 47
Q ss_pred cccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH-----------------HHHHHHHH----HHhcCCce
Q 003776 705 TYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV-----------------ETINELES----MVKGMQWE 763 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-----------------~~~~~~~~----~~~~l~W~ 763 (796)
+||+|..++- + -....++-++-|+|||||++++.+.. .....|.+ |...=++.
T Consensus 147 ~fD~I~~d~~----~--~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~ 220 (237)
T 3c3y_A 147 SYDFGFVDAD----K--PNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIE 220 (237)
T ss_dssp CEEEEEECSC----G--GGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEE
T ss_pred CcCEEEECCc----h--HHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeE
Confidence 8999986532 1 13456777888999999999985310 01223333 33444555
Q ss_pred EEEeeccCCceEEEEEecc
Q 003776 764 VRMTYSKDKEGLLCVEKSM 782 (796)
Q Consensus 764 ~~~~~~~~~e~~l~~~K~~ 782 (796)
..+.- ...++++++|.+
T Consensus 221 ~~~lp--~~dG~~~~~~~~ 237 (237)
T 3c3y_A 221 IVHLP--LGDGITFCRRLY 237 (237)
T ss_dssp EEEEC--STTCEEEEEECC
T ss_pred EEEEE--eCCceEEEEEcC
Confidence 54431 246799998863
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00036 Score=75.40 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=64.3
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcccccccccccccCCCCccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
..|||+|||.|.++.+|... |-+ .|+-+|.. .-+..+-+ .|+-..+ -+...++..+.+||+|-++..|...
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 46999999999999888653 211 22223332 22333222 2332111 1222233336899999988877532
Q ss_pred c--CCcchHHHHHhhcccccCCcEEEEeccH--HHHHHHHHHHh
Q 003776 719 K--KRCNLVAVVAEVDRILRPEGKLIVRDDV--ETINELESMVK 758 (796)
Q Consensus 719 ~--~rC~~~~~l~E~DRiLRP~G~~i~rd~~--~~~~~~~~~~~ 758 (796)
. ..-....+|-++-|+|||||.+++-... .+-..++.+..
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~ 318 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFG 318 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcC
Confidence 1 1123467899999999999999986332 23344444444
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.029 Score=59.80 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=69.5
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~ 440 (796)
|...+..-+..+.+... + .++.+||||||++|.|+.+.+.. .|.|+|+-......-+ ..+..+.+ +.+.
T Consensus 75 y~SR~~~KL~ei~~~~~-l---~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~--~~~ql~w~lV~~~ 148 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERRF-L---EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ--LVQSYGWNIVTMK 148 (321)
T ss_dssp CSSTHHHHHHHHHHTTS-C---CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC--CCCBTTGGGEEEE
T ss_pred ccchHHHHHHHHHHhcC-C---CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc--hhhhcCCcceEEE
Confidence 44444444555555532 2 35679999999999999987764 6999999764210000 00011222 2333
Q ss_pred Ec-CCCCCCCCCCceeEEEEcCCCcccccc----hH---HHHHHHHhhcCCC-cEEEEEeCCC
Q 003776 441 VM-GTERLPFPGIVFDAVHCARCRVPWHIE----GG---KLLLELNRVLRPG-GFFIWSATPV 494 (796)
Q Consensus 441 v~-d~e~LPfpd~SFDlVvss~~~l~w~~d----~~---~~L~Ei~RVLKPG-G~fv~s~~~~ 494 (796)
.. |...++- ..+|+|+|-.+ --..+ .. .+|.-+.+.|++| |-|++-+.-+
T Consensus 149 ~~~Dv~~l~~--~~~D~ivcDig--eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 149 SGVDVFYRPS--ECCDTLLCDIG--ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CSCCTTSSCC--CCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred eccCHhhCCC--CCCCEEEEECc--cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 33 4455553 56999999653 11222 22 3556667899999 9998864433
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00056 Score=74.66 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=62.1
Q ss_pred ccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHh-hcccccccccccccCCCCcccccccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
+...+.|||+|||.|.++.+|... .+.++-+ |. .+..+-+ .++-=+-+|.-+++| .. |+|.+.+++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~~p---~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PH----VIQDAPAFSGVEHLGGDMFDGVP---KG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HH----HHHhhhhcCCCEEEecCCCCCCC---CC-CEEEEechh
Confidence 667899999999999999998652 2333332 21 1111111 123233456555554 44 999988888
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
-.|... ....+|-++-|+|||||+++|-|
T Consensus 272 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDWSDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGBCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 777532 23457999999999999999853
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00061 Score=74.34 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=62.7
Q ss_pred ccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHh-hcccccccccccccCCCCcccccccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
+...+.|||+|||.|.++.+|... .+.++-+ | ..+..+-. .++-=+-+|..+++| .. |+|.+.+++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P----HVISEAPQFPGVTHVGGDMFKEVP---SG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H----HHHHhhhhcCCeEEEeCCcCCCCC---CC-CEEEehHHh
Confidence 667899999999999999998652 2333333 2 11111111 123334456655555 33 999988888
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
-.|... ....+|-++-|+|||||+++|-|
T Consensus 270 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 270 HDWSDQ-HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GGSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 777532 23467999999999999999853
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0074 Score=62.57 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeE-EE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAI-SA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~ 440 (796)
|...+..-+..|.+.. .+ .++.+||||||++|.++.+.+.. .|.++|+-+.....- +..+..|.+.. +.
T Consensus 59 yrSRa~~KL~ei~ek~-~l---~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P--~~~~s~gwn~v~fk 132 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERN-MV---IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP--VPMSTYGWNIVKLM 132 (267)
T ss_dssp CSSTHHHHHHHHHHTT-SS---CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC--CCCCCTTTTSEEEE
T ss_pred ccchHHHHHHHHHHhc-CC---CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc--chhhhcCcCceEEE
Confidence 3444444455666665 33 35779999999999999987764 799999976432100 00112344444 34
Q ss_pred Ec-CCCCCCCCCCceeEEEEcCCCcccccch----H---HHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 441 VM-GTERLPFPGIVFDAVHCARCRVPWHIEG----G---KLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 441 v~-d~e~LPfpd~SFDlVvss~~~l~w~~d~----~---~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
.. |...++ ...+|.|+|-.+ .-..++ . .+|.-+.+.|++ |-|++-+.-+|
T Consensus 133 ~gvDv~~~~--~~~~DtllcDIg--eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 133 SGKDVFYLP--PEKCDTLLCDIG--ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp CSCCGGGCC--CCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred eccceeecC--CccccEEEEecC--CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 34 444444 256999999653 222222 2 355666799999 78887644333
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=69.33 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=64.2
Q ss_pred cccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHH----hhcc---cccccccccccCCCCccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIY----ERGL---FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~----eRGl---ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
=.+|||+|||+|+|+..|... .|+.+-+.| .-+..+- ..|+ .-+..|..+ ++. +.+||+|-++
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~-~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRD-VEL-KDVADRVIMG 193 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGG-CCC-TTCEEEEEEC
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHH-cCc-cCCceEEEEC
Confidence 357999999999999888654 233332221 2222221 2233 222233332 222 5689999765
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccH------HHH-HHHHHHHhcCCceEE
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------ETI-NELESMVKGMQWEVR 765 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------~~~-~~~~~~~~~l~W~~~ 765 (796)
... .+..+|.++-|+|+|||.+++.... +.. ..++.+...+.+++.
T Consensus 194 ~p~-------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 194 YVH-------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp CCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred Ccc-------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 433 4566788889999999999997443 233 335555555555544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00041 Score=69.05 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=64.9
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHH--------hhccc--cc-ccccccccCCCCcccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIY--------ERGLF--GI-YHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~--------eRGli--g~-~~~~ce~f~typrtyDl~ 709 (796)
-..|||+|||.|.++.+|... ..-| +-+|-. ..|..+. .+|+- -+ ..|. +.++..+.+ |.+
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v---~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~-~~l~~~~~~-d~v 102 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLV---VALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA-ERLPPLSGV-GEL 102 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEE---EEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS-TTCCSCCCE-EEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEE---EEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch-hhCCCCCCC-CEE
Confidence 346999999999999998765 3333 333333 3343221 34431 11 2232 234433344 666
Q ss_pred ccccccccccCC-----cchHHHHHhhcccccCCcEEEEec------------------cHH-HHHHHHHHHhcCCceEE
Q 003776 710 HADHLFSKIKKR-----CNLVAVVAEVDRILRPEGKLIVRD------------------DVE-TINELESMVKGMQWEVR 765 (796)
Q Consensus 710 Ha~~~~s~~~~r-----C~~~~~l~E~DRiLRP~G~~i~rd------------------~~~-~~~~~~~~~~~l~W~~~ 765 (796)
+ .+|+ ++.. -....+|-++-|+|||||.+++.- ... ....+..++..--|++.
T Consensus 103 ~--~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 103 H--VLMP-WGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp E--EESC-CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred E--EEcc-chhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 6 2222 1100 001577999999999999999852 112 23347777777788765
Q ss_pred E
Q 003776 766 M 766 (796)
Q Consensus 766 ~ 766 (796)
-
T Consensus 180 ~ 180 (218)
T 3mq2_A 180 D 180 (218)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=62.91 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=53.3
Q ss_pred CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccHH----------HHHHHHHHHhcCCceEEEeecc--
Q 003776 703 PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE----------TINELESMVKGMQWEVRMTYSK-- 770 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~----------~~~~~~~~~~~l~W~~~~~~~~-- 770 (796)
+.+||+|.+..+|.... .....+|-|+-|+|||||++++..... ....+..+++.--+ +.+....
T Consensus 61 ~~~fD~V~~~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~ 137 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQRE 137 (176)
T ss_dssp SSCEEEEEECCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEE
T ss_pred CCCEeEEEECChhhhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCccc
Confidence 57999999877776541 235788999999999999999953211 14556666654444 3332100
Q ss_pred --------------C---C---ceEEEEEecccCCCc
Q 003776 771 --------------D---K---EGLLCVEKSMWRPKE 787 (796)
Q Consensus 771 --------------~---~---e~~l~~~K~~w~~~~ 787 (796)
+ . --+++++|+-|..+.
T Consensus 138 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs 174 (176)
T 2ld4_A 138 PLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGS 174 (176)
T ss_dssp CCCHHHHHHHHHHTCCCCSSEEEEEEEEECCCSSCCS
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEeccCCcccccC
Confidence 0 1 237889999886554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00051 Score=70.28 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=31.4
Q ss_pred ccccccccccccccccC------CcchHHHHHhhcccccCCcEEEEeccH
Q 003776 704 RTYDLLHADHLFSKIKK------RCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~------rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
..||+|-++..|..... .-.+..+|-++-|+|+|||++++.+..
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 48999998765543222 123457788999999999999996443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00065 Score=73.34 Aligned_cols=96 Identities=11% Similarity=0.173 Sum_probs=63.9
Q ss_pred cccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHh-hcccccccccccccCCCCccccccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.+.....|||+|||.|.++.+|... .|.++-+ |. .+..+-+ .++-=+.+|..+++| . ||+|.+.++
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~~p---~-~D~v~~~~~ 255 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ----VVENLSGSNNLTYVGGDMFTSIP---N-ADAVLLKYI 255 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCBTTEEEEECCTTTCCC---C-CSEEEEESC
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH----HHhhcccCCCcEEEeccccCCCC---C-ccEEEeehh
Confidence 4566789999999999999998743 2444433 21 1111100 123334456555444 3 999999998
Q ss_pred cccccCCcchHHHHHhhcccccC---CcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRP---EGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP---~G~~i~rd 745 (796)
|-.|... ....+|-++-|+||| ||+++|.|
T Consensus 256 lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 256 LHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hccCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 8877532 223689999999999 99999863
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00042 Score=77.16 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=84.2
Q ss_pred ccccccccCcc------ccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhcccccccccccccCCC------Ccc
Q 003776 643 TVRNVMDMRSV------YGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTY------PRT 705 (796)
Q Consensus 643 ~iRnvmDm~~g------~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~ty------prt 705 (796)
.-.+|||+||| .||....|... .|..+-+.|.- . .....+-=+..|.. .+++- +.+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m----~--~~~~rI~fv~GDa~-dlpf~~~l~~~d~s 288 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS----H--VDELRIRTIQGDQN-DAEFLDRIARRYGP 288 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----G--GCBTTEEEEECCTT-CHHHHHHHHHHHCC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----h--hcCCCcEEEEeccc-ccchhhhhhcccCC
Confidence 35689999999 77776666532 34444443331 1 11111211223322 22221 378
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc------------------HHHHHHHHHHHhcCCceEEEe
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD------------------VETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~------------------~~~~~~~~~~~~~l~W~~~~~ 767 (796)
||+|.+++.. + -......|-|+=|+|||||++|+.|. ..+++.++.+...+.|.-...
T Consensus 289 FDlVisdgsH--~--~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~~~~ 364 (419)
T 3sso_A 289 FDIVIDDGSH--I--NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPS 364 (419)
T ss_dssp EEEEEECSCC--C--HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGGSCC
T ss_pred ccEEEECCcc--c--chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccccCC
Confidence 9999976532 1 12356779999999999999999633 247888999998887753221
Q ss_pred ecc------C--------CceEEEEEe--------cccCCCchhhhHHhh
Q 003776 768 YSK------D--------KEGLLCVEK--------SMWRPKELETIKYAI 795 (796)
Q Consensus 768 ~~~------~--------~e~~l~~~K--------~~w~~~~~~~~~~~~ 795 (796)
... + -..|++..| +.|.|-..+.+--||
T Consensus 365 ~~~~~~~~~~~~~~~~h~y~~i~~~~kg~n~e~~~p~~~~~~~~~~~~~~ 414 (419)
T 3sso_A 365 DPNRSPGYVDRNIVGLHVYHNVAFVEKGRNDEGGIPTWIPRDFESLVQAS 414 (419)
T ss_dssp CTTCCCCHHHHHEEEEEEETTEEEEEESCCCSCCCCTTSCSBHHHHHHHH
T ss_pred CcCCCCCccccceeEEEecCcEEEEEecccCCCCCCCCcccchhhhhccc
Confidence 100 0 124777777 468887776665554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00078 Score=71.18 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=55.0
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC---CChhH-HHhhccccc--ccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP---DTLPI-IYERGLFGI--YHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~---~~l~~-i~eRGlig~--~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||.|+|+..|..+ .|.-+-+.|.... ..+.. .+.-++.-+ -.|.. .|+ +.+||+|-++..+.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVT-KME--PFQADTVLCDIGES 159 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGG-GCC--CCCCSEEEECCCCC
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHh-hCC--CCCcCEEEECCCcC
Confidence 357999999999998888765 5666656553110 00000 000011111 22332 244 58999998765421
Q ss_pred cccCCcch-----HHHHHhhcccccCCc--EEEEe
Q 003776 717 KIKKRCNL-----VAVVAEVDRILRPEG--KLIVR 744 (796)
Q Consensus 717 ~~~~rC~~-----~~~l~E~DRiLRP~G--~~i~r 744 (796)
...-.+ ..+|-++.|+|+||| .|++.
T Consensus 160 --~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 160 --NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred --CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 111111 126788999999999 99885
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0016 Score=68.59 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-----cc-----------ccc-ccccccccCCCCc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-----GL-----------FGI-YHDWCESFSTYPR 704 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-----Gl-----------ig~-~~~~ce~f~typr 704 (796)
.-++|||+|||.|+++..|...++ ..|+-++-. .-+.++-++ |+ +-+ ..|..+-++. +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 346899999999999999987753 123333322 222222221 22 111 1222221222 57
Q ss_pred cccccccccccccccCCcc--hHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee----c-cCC
Q 003776 705 TYDLLHADHLFSKIKKRCN--LVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY----S-KDK 772 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~----~-~~~ 772 (796)
+||+|-++... .+...-. ...++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+.... . .+.
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~ 230 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASP 230 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSS
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCce
Confidence 89999976432 2221111 2467888999999999999852 23344444444433323333321 1 234
Q ss_pred ceEEEEEec
Q 003776 773 EGLLCVEKS 781 (796)
Q Consensus 773 e~~l~~~K~ 781 (796)
-.++++.|.
T Consensus 231 ~~~~~as~~ 239 (281)
T 1mjf_A 231 WAFLVGVKG 239 (281)
T ss_dssp EEEEEEEES
T ss_pred EEEEEeeCC
Confidence 468888886
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0004 Score=68.88 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=54.3
Q ss_pred ccccccCccccceeeeccCCC---eEEEEeecCCCC-CChhHHHhh----cc--c-ccccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSP-DTLPIIYER----GL--F-GIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.+++.|...- .- |+-++.. ..+..+-++ |+ + -+..|..+.++. +..||+|.+..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDGL---VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP-LAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG-GCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC-CCCeeEEEECC
Confidence 479999999999998886531 22 2222322 344444333 32 1 122344343331 36899999887
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+.... -++-|+|||||.+++.-
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEE
Confidence 765432 27789999999999864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.00034 Score=70.42 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=53.3
Q ss_pred ccccccCccccceeeeccCC----------CeEEEEeecCCCCCChhHHHhh----c--------ccccccccccccCCC
Q 003776 645 RNVMDMRSVYGGFAAAMKDI----------SVWVMNVISIDSPDTLPIIYER----G--------LFGIYHDWCESFSTY 702 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~----------~vwvmnv~p~~~~~~l~~i~eR----G--------lig~~~~~ce~f~ty 702 (796)
..|||+|||.|.+++.|... .|..+-+.| ..+..+-++ | +--+..|....++.
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 160 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP- 160 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH----HHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence 36999999999999988652 233332211 233332222 2 11233444444442
Q ss_pred CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 703 PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
...||+|++...+.. ++-++-|+|+|||.+++.-
T Consensus 161 ~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 NAPYNAIHVGAAAPD---------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GCSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEECCchHH---------HHHHHHHHhcCCCEEEEEE
Confidence 268999997766542 3367789999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=68.07 Aligned_cols=136 Identities=11% Similarity=0.063 Sum_probs=72.3
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc----cc-cccccccccCCCCccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL----FG-IYHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~~ce~f~typrtyDl~H 710 (796)
-++|||+|||.|+++..|..+ ++. .|+-++-. .-+.++-++ |+ +- +..|.....+..+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 478999999999999999877 432 23333332 223322221 21 11 12233222333467899998
Q ss_pred ccccccc-ccCCc--chHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee------ccCCceEE
Q 003776 711 ADHLFSK-IKKRC--NLVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY------SKDKEGLL 776 (796)
Q Consensus 711 a~~~~s~-~~~rC--~~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~------~~~~e~~l 776 (796)
++. +.. ....- ....++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+.... ..+.-.++
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~ 247 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYT 247 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEE
Confidence 653 222 11100 11567889999999999999962 12333333333322222333221 12345688
Q ss_pred EEEecc
Q 003776 777 CVEKSM 782 (796)
Q Consensus 777 ~~~K~~ 782 (796)
+|.|.+
T Consensus 248 ~as~~~ 253 (296)
T 1inl_A 248 FASKGI 253 (296)
T ss_dssp EEESSC
T ss_pred EecCCC
Confidence 899874
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0019 Score=67.12 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=67.8
Q ss_pred cccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----cc----cccccccccccCCCCcccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GL----FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~~~~ce~f~typrtyDl~Ha 711 (796)
-.+|||+|||.|.++.+|... .. .|+-++.. ..+..+-++ |+ --+..|+.+.|+ +..||+|-+
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~ 187 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFL 187 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEE
Confidence 347999999999999888654 22 33344443 445544443 43 223345555443 267999874
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceE
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEV 764 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~ 764 (796)
+- -....+|-++-|+|+|||.+++... ...+.++...++...|..
T Consensus 188 ~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 188 DV--------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp CC--------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred CC--------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 21 1223678889999999999999755 345566666666566654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00038 Score=72.05 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=58.8
Q ss_pred cccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhc-cccccccccccc--CCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERG-LFGIYHDWCESF--STYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~~ce~f--~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||.|.|+.+|.+. .|+.+.+.|.--..-...+-+|+ +..+..+-+.+- +..+.++|+|.++-.+.
T Consensus 80 ~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~- 158 (233)
T 4df3_A 80 RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP- 158 (233)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT-
T ss_pred EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCC-
Confidence 6999999999999999753 36666554432111122233444 555666655432 33346788776432111
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
=....+|.++-|+|+|||.++|.
T Consensus 159 ----~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 159 ----EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp ----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----hhHHHHHHHHHHhccCCCEEEEE
Confidence 12345789999999999999985
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0011 Score=69.00 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=67.8
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh-----cc---cccccccccccCCCCccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER-----GL---FGIYHDWCESFSTYPRTYDLLH 710 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Gl---ig~~~~~ce~f~typrtyDl~H 710 (796)
.-.+|||+|||.|+++..|... .. .|+-+|.. ..+..+-++ |+ --+..|+.++++ +.+||+|-
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi 184 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVI 184 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEE
Confidence 4457999999999999888754 22 23333433 344444333 42 112345555444 36899987
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEeccHH-HHHHHHHHHhcCCceE
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE-TINELESMVKGMQWEV 764 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~-~~~~~~~~~~~l~W~~ 764 (796)
++ + -....+|-++-|+|+|||++++..... ....+...++...|..
T Consensus 185 ~~-~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 185 AD-I-------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp EC-C-------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred Ec-C-------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 52 1 123467889999999999999976543 4555555555555554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0014 Score=70.24 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=64.0
Q ss_pred ccccccCccccceeeeccCC--C-eEEEEeecCCCC-CChhHHHhh----cc--ccc-ccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S-VWVMNVISIDSP-DTLPIIYER----GL--FGI-YHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~-vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|+++.+|... + -- |+-+|-. ..+..+-++ |+ |-+ .+|. ..++.++..||+|-++-
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~~---v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDGV---IYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDA 195 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSE---EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEEC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCE---EEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeC
Confidence 46999999999999888642 1 11 2333433 334444333 44 112 2233 23343467899998753
Q ss_pred cccccc--CC----------cc-------hHHHHHhhcccccCCcEEEEec----cHHHHHHHHHHHhcCCce
Q 003776 714 LFSKIK--KR----------CN-------LVAVVAEVDRILRPEGKLIVRD----DVETINELESMVKGMQWE 763 (796)
Q Consensus 714 ~~s~~~--~r----------C~-------~~~~l~E~DRiLRP~G~~i~rd----~~~~~~~~~~~~~~l~W~ 763 (796)
-.|... .+ -. ...+|-++-|+|||||.+|+.. ..+.-..|+.+++...++
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 322110 00 00 1477889999999999999952 112233455555554443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00067 Score=77.12 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=58.3
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCCCChhH----HHhhcc---ccc-ccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPI----IYERGL---FGI-YHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~----i~eRGl---ig~-~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-..|||+|||.|.++..|...+. -|.-|-+ ...+.+ +...|| |-+ ..|+.+ + .+|..||+|-+..+
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~---s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEA---STMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPM 233 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCSEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCC
T ss_pred CCEEEEecCcccHHHHHHHHcCCCEEEEEEc---HHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCc
Confidence 35799999999999988876643 2332322 222322 333354 222 234433 2 24578999998766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..+... .+..+|.++-|+|+|||++++
T Consensus 234 ~~~~~~e-~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLFNE-RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHTCH-HHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcCcH-HHHHHHHHHHHhcCCCCEEEE
Confidence 5443221 345567799999999999985
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.002 Score=68.56 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=73.5
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc----cc-cccccccccCC-CCccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL----FG-IYHDWCESFST-YPRTYDL 708 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~~ce~f~t-yprtyDl 708 (796)
.-+.|||+|||.|+++..|... ++- .|+-++-. .-+.++-++ ++ +- +..|...-... -+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3478999999999999999876 332 22222322 222222221 11 11 22333222111 2578999
Q ss_pred cccccccccccCCcch-HHHHHhhcccccCCcEEEEecc-----HHHHHHHHHHHhcCCceE-EEee------ccCCceE
Q 003776 709 LHADHLFSKIKKRCNL-VAVVAEVDRILRPEGKLIVRDD-----VETINELESMVKGMQWEV-RMTY------SKDKEGL 775 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~-~~~l~E~DRiLRP~G~~i~rd~-----~~~~~~~~~~~~~l~W~~-~~~~------~~~~e~~ 775 (796)
|-++.........-.. ..++-++-|+|+|||.+++... ......+.+.++..-+.. .... ..+.-.+
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence 9976433221111111 4678899999999999999522 234555555555544433 2221 1234468
Q ss_pred EEEEec
Q 003776 776 LCVEKS 781 (796)
Q Consensus 776 l~~~K~ 781 (796)
+++.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888886
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.002 Score=77.28 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=62.3
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----------hcc--cccccccccccCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----------RGL--FGIYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----------RGl--ig~~~~~ce~f~typrtyDl~ 709 (796)
.-..|||+|||.|.|+.+|....--.-.|+-+|-. ..|..+-+ +|+ |-+++.=-+.++..+.+||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 34579999999999999998763000123333333 34444433 143 222221123355556899999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+..+|..+.. =....+|-+|-|+|||| ++||.
T Consensus 801 V~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 801 TCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEE
T ss_pred EEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEE
Confidence 99888876543 12335788999999999 77775
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0028 Score=68.17 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=76.8
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc----cc-cccccccccCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL----FG-IYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~~ce~f~typrtyDl~ 709 (796)
.-++|||+|||.|+++.+|... ++. .|+-++-. .-+.++-++ |+ +- +..|+.+.++..+.+||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVE--NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 3478999999999999999876 332 23333332 233333221 11 11 2334433333336789999
Q ss_pred ccccccccccCCcch--HHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee------ccCCceEE
Q 003776 710 HADHLFSKIKKRCNL--VAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY------SKDKEGLL 776 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~--~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~------~~~~e~~l 776 (796)
-++. +..+...-.+ ..++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+.... ..+.-.++
T Consensus 194 i~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~ 272 (321)
T 2pt6_A 194 IVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272 (321)
T ss_dssp EEEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEE
T ss_pred EECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEE
Confidence 8754 2222111111 567889999999999999952 23344455544444434443321 11223478
Q ss_pred EEEecc
Q 003776 777 CVEKSM 782 (796)
Q Consensus 777 ~~~K~~ 782 (796)
++.|.+
T Consensus 273 ~as~~~ 278 (321)
T 2pt6_A 273 CCSKTD 278 (321)
T ss_dssp EEESST
T ss_pred EeeCCC
Confidence 888875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0016 Score=70.41 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=66.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc----cccc-cccccccCCC---Ccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL----FGIY-HDWCESFSTY---PRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~-~~~ce~f~ty---prtyDl~Ha 711 (796)
..|||+|||+|+|+.+|..... .|+-+|.. ..|..+-++ || +-++ .|..+.++.. ..+||+|-+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4699999999999988876654 45555554 344433222 33 1122 2222211111 358999976
Q ss_pred ccc-cccccC------CcchHHHHHhhcccccCCcEEEEec-------cHHHHHHHHHHHhcCCceEE
Q 003776 712 DHL-FSKIKK------RCNLVAVVAEVDRILRPEGKLIVRD-------DVETINELESMVKGMQWEVR 765 (796)
Q Consensus 712 ~~~-~s~~~~------rC~~~~~l~E~DRiLRP~G~~i~rd-------~~~~~~~~~~~~~~l~W~~~ 765 (796)
+-- |..... .-.+..+|-++-|+|+|||++++.. .......+++.++....++.
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 432 221100 1124577889999999999977741 22344455555556665554
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.00056 Score=69.29 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=53.4
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----cccc---cccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~~ce~f~typrtyDl~Ha 711 (796)
.-.+|||+|||.|.+++.|... .|+.+ +.. ..+..+-++ |+-. +..|...+++. ...||+|.+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 164 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTI-----ERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIV 164 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEE-----ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEE-----eCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEE
Confidence 3457999999999999988653 33333 322 333333332 3211 22333334432 124999997
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
...+..+. -++-|+|+|||.+++.-
T Consensus 165 ~~~~~~~~---------~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 165 TAGAPKIP---------EPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp CSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred CCcHHHHH---------HHHHHhcCCCcEEEEEE
Confidence 76654332 26779999999999864
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.003 Score=66.24 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=59.5
Q ss_pred ccccccccCccc---cceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----c-ccccccccccc-----c----CCCC
Q 003776 643 TVRNVMDMRSVY---GGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----G-LFGIYHDWCES-----F----STYP 703 (796)
Q Consensus 643 ~iRnvmDm~~g~---g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----G-lig~~~~~ce~-----f----~typ 703 (796)
.++.|||+|||. |.++..+... |= ..|+=+|.. ..|..+-+| + +-=+..|.... . .++|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 578999999999 9876554321 10 122223322 233332222 1 11122232211 0 1122
Q ss_pred -ccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 704 -RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 704 -rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+||+|-+.++|-.+... ....+|-++-|+|||||+|+|.+.
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 378998877777766554 677899999999999999999754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0024 Score=65.96 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=62.1
Q ss_pred cccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh-----c-cc----ccccccccccCCCCcccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER-----G-LF----GIYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR-----G-li----g~~~~~ce~f~typrtyDl~ 709 (796)
-..|||+|||.|.++.+|... .. .|+-+|-. ..+..+-++ | +. -+..|..+. +.-+.+||+|
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v 175 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRA 175 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEE
Confidence 346999999999999988753 22 23333433 344444333 3 21 122344332 2114689998
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhc-CCc
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKG-MQW 762 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~-l~W 762 (796)
-++. -....+|-++-|+|+|||++++.. ..+.+.++...++. ..|
T Consensus 176 ~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 176 VLDM--------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp EEES--------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred EECC--------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 7521 133467899999999999999864 33344444443332 444
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0011 Score=71.57 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=62.2
Q ss_pred cccccccccccCccccceeeeccCC--C--eEEEEeecCCCCCChhHHHh-hcccccccccccccCCCCccccccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI--S--VWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~--~--vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.|...+.|||+|||.|.++.+|... . +.++-+ | ..+..+-+ .++--+-+|..+++ | .||+|.+.++
T Consensus 190 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~---~-~~D~v~~~~v 260 (358)
T 1zg3_A 190 VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFKSI---P-SADAVLLKWV 260 (358)
T ss_dssp HHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTTCC---C-CCSEEEEESC
T ss_pred hccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H----HHHhhcccCCCcEEEeCccCCCC---C-CceEEEEccc
Confidence 4566789999999999999998654 2 333332 2 11100000 23333445665544 4 3999999998
Q ss_pred cccccCCcchHHHHHhhcccccC---CcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRP---EGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP---~G~~i~r 744 (796)
|-.|... ....+|-++-|+|+| ||+++|-
T Consensus 261 lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 261 LHDWNDE-QSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp GGGSCHH-HHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred ccCCCHH-HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 8877532 123689999999999 9999985
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.00042 Score=69.45 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=51.8
Q ss_pred ccccccCccccceeeeccCC------C-eEEEEeecCCCC-CChhHHHhh----cc-------c-ccccccccccC---C
Q 003776 645 RNVMDMRSVYGGFAAAMKDI------S-VWVMNVISIDSP-DTLPIIYER----GL-------F-GIYHDWCESFS---T 701 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~------~-vwvmnv~p~~~~-~~l~~i~eR----Gl-------i-g~~~~~ce~f~---t 701 (796)
..|||+|||.|.+++.|... | .-|..| +.. ..+..+-++ |+ + -+..|..+.++ .
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL---ERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE---ESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE---eCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 47999999999999888653 1 122222 222 233333322 31 1 12223333220 1
Q ss_pred CCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 702 YPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 702 yprtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
-+..||+|++...+.. ++-++-|+|+|||.+++.
T Consensus 159 ~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 159 ELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIP 192 (227)
T ss_dssp HHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEE
Confidence 1367999997766542 346778999999999986
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0087 Score=63.76 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=70.3
Q ss_pred ccccccCc------cccc-eeeeccC--CCeEEEEeecCCCCCChhHHHhhcccc-cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRS------VYGG-FAAAMKD--ISVWVMNVISIDSPDTLPIIYERGLFG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~------g~g~-faA~l~~--~~vwvmnv~p~~~~~~l~~i~eRGlig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|| |.|+ .+|.+.. ..|.-+-+.|. + .++.= +.+|+.+. + ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v-----~~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V-----SDADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B-----CSSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C-----CCCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 45999999 4476 2333333 23444444443 2 13333 55676542 2 3578999997643
Q ss_pred ccc--------ccCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCc-eEEEee--ccCCceEEEEEe
Q 003776 715 FSK--------IKKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQW-EVRMTY--SKDKEGLLCVEK 780 (796)
Q Consensus 715 ~s~--------~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W-~~~~~~--~~~~e~~l~~~K 780 (796)
... ....-.+..+|-++-|+|||||.|++.... .....+..+++...| .+.... ....|.+|+++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 211 011122357889999999999999985311 123466667766634 444431 223577887765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0066 Score=63.73 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=76.0
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc----cc-cccccccccCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL----FG-IYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~~ce~f~typrtyDl~ 709 (796)
.-++|||+|||.|+++..|..+ ++- .|+-++-. .-+.++-++ |+ +- +..|-.+-++..+.+||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4678999999999999999877 442 22222222 222222211 11 11 1222222223335789999
Q ss_pred ccccccccccC--CcchHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee------ccCCceEE
Q 003776 710 HADHLFSKIKK--RCNLVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY------SKDKEGLL 776 (796)
Q Consensus 710 Ha~~~~s~~~~--rC~~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~------~~~~e~~l 776 (796)
-++... .+.. ......++-++-|+|+|||.+++.. ..+.+..+.+.++..=-.+.... ..+.-.++
T Consensus 153 i~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~ 231 (275)
T 1iy9_A 153 MVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFT 231 (275)
T ss_dssp EESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEE
T ss_pred EECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEE
Confidence 976433 2221 1112467888999999999999962 23344555554544433333321 12345688
Q ss_pred EEEecc
Q 003776 777 CVEKSM 782 (796)
Q Consensus 777 ~~~K~~ 782 (796)
++.|.+
T Consensus 232 ~ask~~ 237 (275)
T 1iy9_A 232 IGSKKY 237 (275)
T ss_dssp EEESSC
T ss_pred EeeCCC
Confidence 888874
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0017 Score=68.18 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=56.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCC-C-CChhHHHhh---------cc-------cc-cccccccccCCC---
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDS-P-DTLPIIYER---------GL-------FG-IYHDWCESFSTY--- 702 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~-~-~~l~~i~eR---------Gl-------ig-~~~~~ce~f~ty--- 702 (796)
+.|||+|||.|.++.+|..... -.|+-+|- . ..+.++-++ |+ |- +..+|.......
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 5799999999999888766542 12333343 2 333333221 22 21 225576543221
Q ss_pred --CccccccccccccccccCCcchHHHHHhhccccc---C--CcEEEE
Q 003776 703 --PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILR---P--EGKLIV 743 (796)
Q Consensus 703 --prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLR---P--~G~~i~ 743 (796)
+..||+|-+..++-. .-.+..+|-++.|+|+ | ||.++|
T Consensus 159 ~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 478999986554432 2235678899999999 9 996554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.004 Score=66.92 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=70.4
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc----cc-cccccccccCCCCcccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL----FG-IYHDWCESFSTYPRTYDLL 709 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~~ce~f~typrtyDl~ 709 (796)
.-++|||+|||.|+++..|... ++. .|+-++-. .-+.++-++ |+ |- +..|..+.++.-+.+||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 3578999999999999999876 332 33333332 223332221 22 11 1223322222235789999
Q ss_pred ccccccccccC-Ccch-HHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee----c--cCCceEE
Q 003776 710 HADHLFSKIKK-RCNL-VAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY----S--KDKEGLL 776 (796)
Q Consensus 710 Ha~~~~s~~~~-rC~~-~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~----~--~~~e~~l 776 (796)
-++. +..+.. .-.+ ..++-++-|+|||||.+++.. ....+..+.+..+.+--.+.... + .+.=.++
T Consensus 186 i~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~ 264 (314)
T 2b2c_A 186 ITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYL 264 (314)
T ss_dssp EECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred EEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEE
Confidence 9654 222211 1112 567889999999999999963 22333444444433323333321 1 1111588
Q ss_pred EEEec
Q 003776 777 CVEKS 781 (796)
Q Consensus 777 ~~~K~ 781 (796)
++.|.
T Consensus 265 ~ask~ 269 (314)
T 2b2c_A 265 ICAKN 269 (314)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88876
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.00077 Score=71.92 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=55.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccc---cccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||.|.++..|...-----.|+-++.. ..+..+-++ |+-. +..|..+.++ .+..||+|.+...+.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTVGVD 155 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSBBS
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcCCHH
Confidence 479999999999998886531000012222222 444444443 5421 2234433222 236899999888776
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
... -++-|+|+|||.+++...
T Consensus 156 ~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 156 EVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCC---------HHHHHHEEEEEEEEEEBC
T ss_pred HHH---------HHHHHhcCCCcEEEEEEC
Confidence 433 366789999999999743
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0039 Score=66.75 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=75.1
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh------hc-c----cc-cccccccccCCCCccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE------RG-L----FG-IYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e------RG-l----ig-~~~~~ce~f~typrtyDl 708 (796)
.-+.|||+|||.|+++..|..+ ++- .|+-++-. .-+.++-+ +| + +- +..|..+-++..+.+||+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 3478999999999999999876 332 22222322 22222211 11 1 11 122332222223678999
Q ss_pred cccccccccc---cC--CcchHHHHHhhcccccCCcEEEEec------cHHHHHHHHHHHhcCCceEEEee----c-cCC
Q 003776 709 LHADHLFSKI---KK--RCNLVAVVAEVDRILRPEGKLIVRD------DVETINELESMVKGMQWEVRMTY----S-KDK 772 (796)
Q Consensus 709 ~Ha~~~~s~~---~~--rC~~~~~l~E~DRiLRP~G~~i~rd------~~~~~~~~~~~~~~l~W~~~~~~----~-~~~ 772 (796)
|-++... .+ .. .--...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+.... . .+.
T Consensus 155 Ii~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~ 233 (314)
T 1uir_A 155 VIIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN 233 (314)
T ss_dssp EEEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEE
T ss_pred EEECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCe
Confidence 9987433 32 11 1113567889999999999999852 22345555555555433333221 1 122
Q ss_pred ceEEEEEecc
Q 003776 773 EGLLCVEKSM 782 (796)
Q Consensus 773 e~~l~~~K~~ 782 (796)
-.+++|.|.+
T Consensus 234 ~~~~~as~~~ 243 (314)
T 1uir_A 234 FGFLLASDAF 243 (314)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEEECCC
Confidence 3578888863
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0076 Score=65.04 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=70.5
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCC-CChhHHHhh-cc-----cc-cccccccccCCC-Cccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP-DTLPIIYER-GL-----FG-IYHDWCESFSTY-PRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~-~~l~~i~eR-Gl-----ig-~~~~~ce~f~ty-prtyDl~Ha~~~ 714 (796)
+.|||+|||.|+++..|.. .|-. .|+-++-. .-+.++-++ ++ +- +..|-.+-...+ +.+||+|-.+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~- 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV- 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC-
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC-
Confidence 3899999999999999987 3321 12222222 222222111 01 11 122322222233 37899998753
Q ss_pred cccccCCcc--hHHHHHhhcccccCCcEEEEecc--H--HHHHH-HHHHHhcCCceEEEe-ec------cCCceEEEEEe
Q 003776 715 FSKIKKRCN--LVAVVAEVDRILRPEGKLIVRDD--V--ETINE-LESMVKGMQWEVRMT-YS------KDKEGLLCVEK 780 (796)
Q Consensus 715 ~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~rd~--~--~~~~~-~~~~~~~l~W~~~~~-~~------~~~e~~l~~~K 780 (796)
|..+...-. -..++-++-|+|+|||.+++.-. . ..+.. ++.|...+. .+.+. .. ....-|++|.|
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~As~ 246 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILMGSD 246 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEEEEC
Confidence 333221111 25678899999999999998521 1 22222 333333333 33332 11 12346789988
Q ss_pred ccc
Q 003776 781 SMW 783 (796)
Q Consensus 781 ~~w 783 (796)
...
T Consensus 247 ~pl 249 (317)
T 3gjy_A 247 TEF 249 (317)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 796 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 5e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 8e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.001 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 3/155 (1%)
Query: 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALER 433
IDF++E + A + RV LD+ CG L +RG + +E + +
Sbjct: 27 IDFVEEIFKEDAKREVRRV-LDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 434 GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSA 491
I + G FDAV + + + KL ++ L+PGG FI
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 492 TPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDT 526
+ + +WN K + + +
Sbjct: 146 PCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 5e-06
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 20/135 (14%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFAL 431
Y ++ + R VLDV CG L + G S D+
Sbjct: 43 EYKAWLLGLLRQHG-CHR---VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKER 98
Query: 432 ERGIPAISAVMGT----------ERLPFPG------IVFDAVHCARCRVPWHIEGGKLLL 475
+ + +P + ++ E L
Sbjct: 99 WNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALK 158
Query: 476 ELNRVLRPGGFFIWS 490
+ ++RPGG +
Sbjct: 159 NIASMVRPGGLLVID 173
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 1e-05
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447
+ VLD+GCG + D ++ D + ++ A +R V + RL
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL 141
Query: 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505
PF DA+ P E EL RV++PGG+ +ATP + L E +
Sbjct: 142 PFSDTSMDAIIR--IYAPCKAE------ELARVVKPGGWV-ITATPGPRHLMELKGLI 190
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFAL 431
Y+ F+ +V + ++D GCG G L + D E + A
Sbjct: 13 DYVSFLVNTVWKITKPVH---IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR 69
Query: 432 ERGIPAISAVMGTERLPFPGIVFDAVHCARCR--VPWHIEGGKLLLELNRVLRPGGFFI 488
E E + D A C + +L ++ ++ GG I
Sbjct: 70 ELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 393 VLDVGCGVASFGGFLFDRG---VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449
+LD+G G + + +A+ + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 450 PGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505
D C W G L + L+PGG + P +++LP EI
Sbjct: 97 ANEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLIG-EPYWRQLPATEEIA 150
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 8e-04
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG---VLTMSFAPKDEHEAQVQF 429
Y + + + + +VVLDVG G F G V+ + + ++ ++
Sbjct: 21 YRNSMFHNRHL----FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVK 76
Query: 430 ALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFF 487
A + E + P D + E +L ++ L P G
Sbjct: 77 ANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 136
Query: 488 IWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520
+Y ED + + K WE V
Sbjct: 137 FPDRATLYVTAIEDRQYKD-----YKIHWWENV 164
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 39.3 bits (90), Expect = 0.001
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 14/145 (9%)
Query: 366 FKNGALHYIDFIQESVPDVAW-----------GKRTRVVLDVGCGVASFGGFLFDRGVLT 414
+ A Y I+ V W LD+ CG + L + T
Sbjct: 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNT 62
Query: 415 MSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGG--- 471
+ E ++ + FD + C + I+
Sbjct: 63 WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLK 122
Query: 472 KLLLELNRVLRPGGFFIWSATPVYQ 496
K ++ L+ GG FI+ Y+
Sbjct: 123 KYFKAVSNHLKEGGVFIFDINSYYK 147
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.001
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRG--VLTMSFAPKDEHEAQVQF 429
H + + ++ + R VLD+G G + + + A
Sbjct: 3 HSLGLMIKTA-ECRAEHR---VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA 58
Query: 430 ALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488
+ E LPFP FD + C R + K + E+ RVL+ G F+
Sbjct: 59 QEKGVENVRFQQGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 796 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.59 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.58 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.51 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.5 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.43 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.42 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.41 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.37 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.37 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.36 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.35 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.34 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.33 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.32 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.31 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.31 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.22 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.22 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.2 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.16 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.16 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.15 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.08 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.06 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.03 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.03 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.01 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.01 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.98 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.97 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.89 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.83 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.82 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.81 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.73 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.66 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.62 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.6 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.57 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.54 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.41 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.31 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.28 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.24 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.24 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.21 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.18 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.16 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.12 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.12 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.11 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.09 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.09 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.08 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.06 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.06 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.06 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.91 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.9 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.9 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.89 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.88 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.84 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.83 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.81 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.8 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.8 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.78 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.78 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.77 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.72 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 97.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.68 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.67 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.65 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.63 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.63 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.59 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.56 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.56 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.55 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.53 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.5 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.5 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.5 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.46 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.39 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.37 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.36 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.3 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.25 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.23 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.22 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.2 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.19 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.17 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.15 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.1 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.0 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.0 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.93 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 96.82 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.79 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.79 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 96.68 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.38 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.16 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.06 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 95.92 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.78 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 95.72 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 95.55 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.35 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.91 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 94.83 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 94.82 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.72 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 94.23 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 94.07 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 93.94 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.32 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.16 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 93.05 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.66 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 92.6 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 92.53 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.01 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.35 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 90.53 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 90.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 90.36 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 90.3 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 90.16 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 90.0 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 89.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.87 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.68 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 89.29 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.58 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.49 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 88.34 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 88.06 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 86.68 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 86.65 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 85.46 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.49 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 83.3 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 83.03 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 82.29 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 81.14 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 80.28 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 80.27 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=1.4e-17 Score=168.07 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=98.6
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP 448 (796)
++.++|.+.++. +++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+ +.+...+++ +.+.+++++.+|
T Consensus 3 ~~~~~l~~~~~~----~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 3 HSLGLMIKTAEC----RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHHHHHHTC----CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCC
T ss_pred hHHHHHHHHhCC----CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhccccccccccccccccccc
Confidence 456677777664 57899999999999999999886 8999999999999988 555556654 677788899999
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|++++||+|+|..+ ++|..++..+|++++|+|||||+|+++..
T Consensus 78 ~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 78 FPDDSFDIITCRYA-AHHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp SCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceeeeece-eecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 99999999999875 78888999999999999999999998743
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=2.9e-17 Score=164.08 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+++.+|||||||+|.++..|+++ +|+|+|+++.|+..|+... ...+. .+.+.+.+.+.+||++++||+|+|..+ +
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~-~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~-l 91 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFI-EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA-A 91 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC-G
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcc-ccccccccccccccccccccccccccccccccc-c
Confidence 46789999999999999999876 8999999999999887444 34444 467888899999999999999999985 7
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|..++..+|.+++|+|||||+|++..+
T Consensus 92 ~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 92 HHFPNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7777999999999999999999998743
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=9.5e-17 Score=166.74 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+++.+|||||||+|.++..|+++ .|+|+|+++.++..++ +.+...|+. +.+..++...+|+++++||+|+|..+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~-~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhh-cccccccccccccccccccccccccccccchhhccch
Confidence 56889999999999999999864 7999999999998887 445555654 67888899999999999999999874
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+++..++..+|.+++|+|||||+|++..+.
T Consensus 145 -l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 145 -FLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -hhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 555668999999999999999999987543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.1e-16 Score=158.34 Aligned_cols=101 Identities=28% Similarity=0.375 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+..+|||||||+|.++..|++. .|+|+|+|+.|+..|+ +.+...+..+.+...++..+|+++++||+|+|..+ ++|
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~-l~~ 114 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS-IVH 114 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC-GGG
T ss_pred CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecc-hhh
Confidence 4679999999999999999986 7999999999999997 55556677778888889999999999999999874 665
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. ++..+|+++.|+|||||+|++..
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 44 66789999999999999999874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=6.3e-16 Score=160.30 Aligned_cols=113 Identities=27% Similarity=0.391 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
......+...++ .++.+|||||||+|.++..|+++ .++|+|+++.++..| +++...+.+.++++..
T Consensus 71 ~~~~~~l~~~~~-----~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a-----~~~~~~~~~~~~d~~~ 140 (268)
T d1p91a_ 71 DAIVAQLRERLD-----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA-----AKRYPQVTFCVASSHR 140 (268)
T ss_dssp HHHHHHHHHHSC-----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHH-----HHHCTTSEEEECCTTS
T ss_pred HHHHHHHHHhcC-----CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhh-----hcccccccceeeehhh
Confidence 344445555554 35789999999999999999875 688999999887554 4555667888999999
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHH
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDV 502 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~ 502 (796)
+||++++||+|++... +.+ +.|++|+|||||+|+++ .+.++++.+++
T Consensus 141 l~~~~~sfD~v~~~~~--~~~------~~e~~rvLkpgG~l~~~-~p~~~~l~el~ 187 (268)
T d1p91a_ 141 LPFSDTSMDAIIRIYA--PCK------AEELARVVKPGGWVITA-TPGPRHLMELK 187 (268)
T ss_dssp CSBCTTCEEEEEEESC--CCC------HHHHHHHEEEEEEEEEE-EECTTTTHHHH
T ss_pred ccCCCCCEEEEeecCC--HHH------HHHHHHHhCCCcEEEEE-eeCCcchHHHH
Confidence 9999999999999763 322 68999999999999988 56677776654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=9.5e-16 Score=153.42 Aligned_cols=98 Identities=29% Similarity=0.404 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
.+.+|||||||+|.++..|++. +|+|+|+|+.|+..|+ +++.. .+..++++.|||++++||+|+|....++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~-----~~~~~-~~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR-----EKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH-----HHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeecccccccccc-----ccccc-ccccccccccccccccccceeeecchhhh
Confidence 4679999999999999999986 7999999998876554 44443 35677889999999999999997654666
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..|+..+|+++.|+|||||+|+++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 67999999999999999999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3e-15 Score=151.97 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=94.8
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e 445 (796)
...++.|.+.+.. .++.+|||||||+|.++..|+++ .|+|+|+++.|+..++ +.+...|+. +.+...+..
T Consensus 19 ~~~~~~l~~~~~l----~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 19 EEKYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAA 93 (245)
T ss_dssp HHHHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCT
T ss_pred HHHHHHHHHHcCC----CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHh
Confidence 3456667777664 46889999999999999998763 7999999999998886 556677764 678888888
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+ +++++||+|+|..+ ++|..++..+|.+++|+|||||+|++..+
T Consensus 94 ~~-~~~~~fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 94 GY-VANEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TC-CCSSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hc-cccCceeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 87 46789999999885 55556899999999999999999998743
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=4.1e-15 Score=150.15 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=86.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.+..+|||||||+|.++..|+++ +|+|+|+|+.|+..|+ +.+...++.+.+.+++++.++++ +.||+|+|....++
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~-~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc-cccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 35679999999999999999886 8999999999999998 44566788888999999999988 58999999765444
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. +...+|.+++|+|||||+|++..
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 432 56789999999999999999873
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=2.4e-15 Score=148.24 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE 469 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d 469 (796)
..+|||||||+|.++..|. .++|+|+|+.++..++ +++ +.+.+.+.+.+|+++++||+|+|... +++..+
T Consensus 37 ~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~a~-----~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~-l~h~~d 106 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEIAR-----KRG--VFVLKGTAENLPLKDESFDFALMVTT-ICFVDD 106 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT--CCEEEESCHHHHHHHH-----HTT--CEEEECBTTBCCSCTTCEEEEEEESC-GGGSSC
T ss_pred CCeEEEECCCCcccccccc--eEEEEeCChhhccccc-----ccc--cccccccccccccccccccccccccc-cccccc
Confidence 4589999999999998885 5799999998876554 444 46788888999999999999999974 676679
Q ss_pred hHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 470 GGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 470 ~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+..+|.+++|+|||||+|++..+.
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccchhhhhhcCCCCceEEEEecC
Confidence 999999999999999999998543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=1.1e-14 Score=147.47 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=90.1
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
.+++.+.+... +..+.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+ +.+...++++.+.++|+..++++
T Consensus 24 ~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~- 99 (246)
T d1y8ca_ 24 SDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-
T ss_pred HHHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-
Confidence 34444444331 234679999999999999999986 7999999999999987 45566788888888988888765
Q ss_pred CceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEe
Q 003776 452 IVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++||+|+|....+++.. ++..+|++++++|||||.|++..
T Consensus 100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 68999999654454443 66789999999999999999863
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.51 E-value=7.7e-14 Score=139.65 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=78.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++.+|||||||+|.++..|++. +|+|+|+|+.|+..|+...+ ..+....+.......++++...||+|+|+.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchhhccccccceeeEEee
Confidence 45789999999999999888752 79999999999999985444 333333333333333445556799999987
Q ss_pred CCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 CRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 ~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+ +++.. ++..+|++++|+|||||.|++.....
T Consensus 117 ~-l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 117 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp C-GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred e-ccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 5 66653 77899999999999999999975443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.50 E-value=4.4e-14 Score=147.07 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e 445 (796)
..|+..|.+.+..+ .++.+|||||||+|.++..|+.. .|+|+|+++.++..|+ +.+...+..+.+...+..
T Consensus 12 ~d~l~~l~~~~~~~---~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHHhcc---CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-cccccccccccccccccc
Confidence 45677777665443 35789999999999999998763 5999999999998887 444455666778888988
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+|++ ++||+|+|..+ ++|..++..+|.+++|+|||||+|++..+
T Consensus 88 ~~~~~-~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 EIELN-DKYDIAICHAF-LLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TCCCS-SCEEEEEEESC-GGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccc-CCceEEEEehh-hhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 89986 57999999874 66667999999999999999999998754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.9e-14 Score=144.01 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPG 451 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd 451 (796)
++.+.+..+....+..+|||||||+|.++..|+.+ .|+++|+|+.|+..|+.... ..+.. ..+.++++..+++++
T Consensus 47 ~l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~-~~~~~~~~f~~~d~~~~~~~~ 125 (222)
T d2ex4a1 47 FLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEP 125 (222)
T ss_dssp HHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTG-GGGGGEEEEEECCGGGCCCCS
T ss_pred HHHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccc-ccccccccccccccccccccc
Confidence 34444433332345689999999999999988654 69999999999988874433 33333 467788889999999
Q ss_pred CceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEEeC
Q 003776 452 IVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++||+|++..+ +++..++ ..+|.+++|+|||||.|++...
T Consensus 126 ~~fD~I~~~~~-l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 126 DSYDVIWIQWV-IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp SCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccc-cccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 99999999874 5544443 5899999999999999998743
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=2.4e-13 Score=133.49 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=81.1
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+++|||||||+|.++.+|+++ +|+++|+++.++..++ +.+...++. +.+.+.+...+++ +++||+|+|..+ +++
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~-~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~-~~~ 107 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLE-RIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVV-MMF 107 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESC-GGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHH-HHhhhccccchhhhheecccccc-cccccEEEEeee-eec
Confidence 459999999999999999987 8999999999999887 445566766 4666777777776 578999999874 444
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 467 HI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+ +...+|.++.++|+|||+|++..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 34689999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.4e-13 Score=142.10 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=90.7
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
..|..|.+.-.+.+.+.+.... .++.+|||+|||+|.++..+++. +|+|+|+++.++..|+ +.++..++...+..
T Consensus 97 ~aFGTG~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~ 173 (254)
T d2nxca1 97 MAFGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLE 173 (254)
T ss_dssp -----CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEE
T ss_pred cccCccccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEe
Confidence 4566666666666666665422 46889999999999999888775 8999999999999887 66777888887777
Q ss_pred cCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 442 MGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 442 ~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+... +++.++||+|+++. +. .....++.++.|+|||||+|+++..
T Consensus 174 ~d~~~-~~~~~~fD~V~ani--~~--~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 174 GSLEA-ALPFGPFDLLVANL--YA--ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp SCHHH-HGGGCCEEEEEEEC--CH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccc-cccccccchhhhcc--cc--ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 76533 35567899999975 21 2456788999999999999999743
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.42 E-value=1.1e-13 Score=142.29 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=85.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfp 450 (796)
..+.+.++. ....+|||+|||+|.++..|+.. .|+++|+++.|+..|+...+ +.+ +.+.+.+.+.++++
T Consensus 83 ~~fl~~l~~----~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~d~~~~~~~ 155 (254)
T d1xtpa_ 83 RNFIASLPG----HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA---GMPVGKFILASMETATLP 155 (254)
T ss_dssp HHHHHTSTT----CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT---TSSEEEEEESCGGGCCCC
T ss_pred HHHHhhCCC----CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc---ccccceeEEccccccccC
Confidence 334445543 45789999999999999987753 69999999999988764332 223 46677888999999
Q ss_pred CCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++||+|+|..+ ++|..+ ...+|++++++|||||+|++..+
T Consensus 156 ~~~fD~I~~~~v-l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 156 PNTYDLIVIQWT-AIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SSCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccceEEeecc-ccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999985 555444 35889999999999999998743
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.41 E-value=2.5e-13 Score=138.49 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCC-CCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPF-PGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPf-pd~SFDlVvss~~ 462 (796)
++.+|||||||+|..+..+++. .|+|+|+|+.|+..|+.+ +...+. .+.+.++|+...++ ..++||+|+|..+
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 5789999999999988888763 599999999999888733 333333 46678888866665 4678999999875
Q ss_pred Cccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+.. +...+|.++.|+|||||+|+++.+
T Consensus 103 -l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 103 -FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp -GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -eeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 66653 346899999999999999998743
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.39 E-value=7.6e-13 Score=132.58 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||||||+|.++..|+++ .|+|+|+++.++..|+.. ..-.+.+...+.+.+++ +++||+|+|.. .++|.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~----~~~~~~~~~~~~~~~~~-~~~fD~I~~~~-vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR----LKDGITYIHSRFEDAQL-PRRYDNIVLTH-VLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHH----SCSCEEEEESCGGGCCC-SSCEEEEEEES-CGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcc----ccccccccccccccccc-ccccccccccc-eeEec
Confidence 668999999999999999875 899999999888766522 12235666677777776 47899999987 36666
Q ss_pred cchHHHHHHHH-hhcCCCcEEEEEeC
Q 003776 468 IEGGKLLLELN-RVLRPGGFFIWSAT 492 (796)
Q Consensus 468 ~d~~~~L~Ei~-RVLKPGG~fv~s~~ 492 (796)
.++..+|.+++ |+|||||.|+++.+
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 69999999998 89999999999854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=9.4e-13 Score=137.46 Aligned_cols=121 Identities=12% Similarity=0.159 Sum_probs=88.5
Q ss_pred CCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCe
Q 003776 361 GGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPA 437 (796)
Q Consensus 361 gggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~ 437 (796)
.+...........++.+.+.+.. +++.+|||||||+|.++.+++++ .|+|+++|+.++..++ +.+++.++..
T Consensus 28 ~~~~tL~~AQ~~k~~~~~~~l~l----~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~ 102 (280)
T d2fk8a1 28 PPELTLEEAQYAKVDLNLDKLDL----KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNR 102 (280)
T ss_dssp STTCCHHHHHHHHHHHHHTTSCC----CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCC----CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhcccc
Confidence 33333444444556777777653 56899999999999999998864 8999999999988876 5555666653
Q ss_pred --EEEEcCCCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEe
Q 003776 438 --ISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 438 --~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.....+...+ +++||.|++... ..|. +...+|+++.|+|||||+|++..
T Consensus 103 ~~~~~~~d~~~~---~~~fD~i~si~~--~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 103 SRQVLLQGWEDF---AEPVDRIVSIEA--FEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CEEEEESCGGGC---CCCCSEEEEESC--GGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhhhhhhhhhh---ccchhhhhHhhH--HHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 3344444444 368999999874 3343 45899999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=9.6e-13 Score=138.26 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=93.0
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI 435 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl 435 (796)
|+.+...+.......++.+.+.+.. +++.+|||||||.|.++.+++++ .|+|+++|+..+..++ +.+...++
T Consensus 35 ~~~~~~tL~~Aq~~k~~~~~~~l~l----~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l 109 (291)
T d1kpia_ 35 FERPDMTLEEAQYAKRKLALDKLNL----EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDS 109 (291)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCC----CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhcc
Confidence 4444555556556667777777764 57899999999999999999864 8999999998888776 55566666
Q ss_pred Ce--EEEEcCCCCCCCCCCceeEEEEcCCCccccc----------chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 436 PA--ISAVMGTERLPFPGIVFDAVHCARCRVPWHI----------EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 436 ~~--~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~----------d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.. .+... +.++++++||.|+|... ..|. +...+|++++|+|||||+|++.+.
T Consensus 110 ~~~v~~~~~---d~~~~~~~fD~i~sie~--~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 110 PRRKEVRIQ---GWEEFDEPVDRIVSLGA--FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp SSCEEEEEC---CGGGCCCCCSEEEEESC--GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred chhhhhhhh---cccccccccceEeechh--HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 53 33333 34566789999999874 3343 247999999999999999998743
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.36 E-value=3.8e-13 Score=129.12 Aligned_cols=101 Identities=10% Similarity=-0.131 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-------------CCCeEEEEcCCCCCC-CCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-------------GIPAISAVMGTERLP-FPG 451 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-------------gl~~~~~v~d~e~LP-fpd 451 (796)
.++.+|||+|||+|..+.+|+++ .|+|+|+|+.|+..|+.+ +... +....+...+...++ +..
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE-RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHH-HCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHH-hccccchhhhhhhhhccccccceecccccccccccc
Confidence 46889999999999999999986 899999999999888633 3222 223355666666665 345
Q ss_pred CceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..||+|++... +++.. +...+++++.++|||||++++.
T Consensus 98 ~~~D~i~~~~~-l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 98 GHCAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HSEEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cceeEEEEEee-eEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 78999999874 44433 3578999999999999998876
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=4e-13 Score=139.79 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-----eEEEEcC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-----AISAVMG 443 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-----~~~~v~d 443 (796)
..+.+++...+.. ..+.+|||||||+|.++..|+++ .|+|+|+|+.|+..|+... ..++.. ......+
T Consensus 42 ~~~~~~l~~~l~~----~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~-~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKER-WNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhh----cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHH-Hhcccccccceeeeeecc
Confidence 3445555555543 34679999999999999999987 8999999999999887443 333322 1223333
Q ss_pred C----CCCCCCCCceeEEEEcCCCccccc-------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 444 T----ERLPFPGIVFDAVHCARCRVPWHI-------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 444 ~----e~LPfpd~SFDlVvss~~~l~w~~-------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. ..+|+ ..+||+|+|..+.+++.. +...+|++++|+|||||+|+|..
T Consensus 117 ~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 117 WLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 2 22343 468999999765444432 35679999999999999999873
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=8e-13 Score=136.24 Aligned_cols=104 Identities=9% Similarity=-0.007 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----------CeEEEeCChhhHHHHHHHHHHHcCCCe-E--EEEcCC------CCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----------GVLTMSFAPKDEHEAQVQFALERGIPA-I--SAVMGT------ERLP 448 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----------~V~gvDiSp~dl~~A~~q~A~ergl~~-~--~~v~d~------e~LP 448 (796)
++..+|||||||+|.++..|+.. .++++|+++.|+..++.+.+....+.. . +..... ...+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44458999999999988877542 479999999999888755544333332 2 222221 1346
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++||+|+|..+ ++|..++..+|++++++|||||+|++...
T Consensus 119 ~~~~~fD~I~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccc-eecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 77899999999986 77777999999999999999999998744
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=3.8e-12 Score=133.23 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI 435 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl 435 (796)
|..+......+..+.++.+.+.+.. +++.+|||||||.|.++.++++. .|+|+++|+..+..++. .+.+.|+
T Consensus 36 ~~~~~~tL~eAQ~~k~~~~~~~l~l----~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~-~~~~~g~ 110 (285)
T d1kpga_ 36 FERDDMTLQEAQIAKIDLALGKLGL----QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSEN 110 (285)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTTC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCC----CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHH-HHHhhhh
Confidence 4444555556666667778777764 57899999999999999998874 89999999988887773 3344444
Q ss_pred C--eEEEEcCCCCCCCCCCceeEEEEcCCCcccc-cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 436 P--AISAVMGTERLPFPGIVFDAVHCARCRVPWH-IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 436 ~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. +.+...|...+| ++||.|+|....-|.. .+...+|+++.|+|||||++++..
T Consensus 111 ~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 111 LRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 3 455666666665 6799999987432222 255899999999999999999763
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.32 E-value=2.3e-12 Score=125.91 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
.+....+...+.. .++.+|||||||+|.++..|+.. +|+++|+++.++..|+ +.++..++ .+.+..+++..
T Consensus 19 ~eir~~il~~l~~----~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~-~n~~~~gl~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 19 MEVRCLIMCLAEP----GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTE-MNLQRHGLGDNVTLMEGDAPE 93 (186)
T ss_dssp HHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCC----CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHH-HHHHHcCCCcceEEEECchhh
Confidence 3444455555442 46889999999999999999876 8999999999999888 55666776 45677777777
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++++...||+|++... ......++..+.++|||||++++..
T Consensus 94 ~~~~~~~~D~v~~~~~----~~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGS----GGELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HHTTSCCEEEEEESCC----TTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCcCEEEEeCc----cccchHHHHHHHHHhCcCCEEEEEe
Confidence 7777789999999763 2246789999999999999998763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.31 E-value=3.9e-12 Score=124.90 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC---CeEEEEcCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTERLP 448 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl---~~~~~v~d~e~LP 448 (796)
.++|.+.++. .++.+|||+|||+|.++..|+.. +|+++|+++.++..++.. +...++ .+.+...+... +
T Consensus 41 t~lLi~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n-~~~~~l~~~~i~~~~~d~~~-~ 114 (194)
T d1dusa_ 41 TKILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN-IKLNNLDNYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCTTSCEEEEECSTTT-T
T ss_pred HHHHHHhCCc----CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHH-HHHhCCccceEEEEEcchhh-h
Confidence 4556777664 45789999999999999999875 899999999999888744 444444 34556666544 5
Q ss_pred CCCCceeEEEEcCCCcccccc-hHHHHHHHHhhcCCCcEEEEE
Q 003776 449 FPGIVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d-~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+++++||+|+|+.. ++...+ ...+|.++.|+|||||.+++.
T Consensus 115 ~~~~~fD~Ii~~~p-~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 115 VKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp CTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCceEEEEccc-EEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence 67889999999874 333233 367899999999999998875
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.9e-13 Score=132.61 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--C
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--E 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e 445 (796)
..+...+...+. ..+.+|||||||+|.++.+|+++ .|+++|+++.++..|+. .+...+..+.....+. .
T Consensus 40 ~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 40 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHH-Hhhhccccccccccccccc
Confidence 344444544443 25789999999999999999875 79999999999988873 3444444455555543 3
Q ss_pred CCCCCCCceeEEEEcC---CCcccc-cchHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCAR---CRVPWH-IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~---~~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..++++++||+|+... ....+| .++..+|++++|+|||||+|++.
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 3467788999998421 112223 37788999999999999999874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.2e-12 Score=131.51 Aligned_cols=104 Identities=14% Similarity=-0.015 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHH-----------------cCCCeEEEEcCCCCC-
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALE-----------------RGIPAISAVMGTERL- 447 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~e-----------------rgl~~~~~v~d~e~L- 447 (796)
.++.+|||+|||+|..+.+|+++ +|+|+|+|+.++..++.+.... .+..+.+.+.|...+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 45789999999999999999987 8999999999987776443211 123456677776555
Q ss_pred CCCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 448 PFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+...+.||+|+...++.+.+. +...++.++.|+|||||++++..
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 466789999999875343333 45789999999999999988763
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.26 E-value=1.9e-11 Score=124.71 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
...++|||||||+|.++..|+++ .++++|+ +.++..++... ...++. +.+...|... +.+ .+||+|++..
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHH-HHhhcccchhhccccchh-hcc-cchhheeecc
Confidence 34689999999999999999875 6788898 55777776444 445543 5566666532 223 5799999987
Q ss_pred CCcccccch--HHHHHHHHhhcCCCcEEEEEeCCCCC--CchHHHHHHHHHHHHHH-hhcceeehhhhhhccceeEEEEE
Q 003776 462 CRVPWHIEG--GKLLLELNRVLRPGGFFIWSATPVYQ--KLPEDVEIWNAMSQLIK-AMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 462 ~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s~~~~~~--~l~El~~~~~~le~l~~-~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
. +|...+. ..+|++++|+|||||+|++....... ........+ .+.-+.. .........+...+.+.||.+.+
T Consensus 155 v-lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~-dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 155 V-LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTEL-DLRMLVFLGGALRTREKWDGLAASAGLVVEE 232 (253)
T ss_dssp C-GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHH-HHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred c-cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHh-hHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence 4 4444333 57899999999999999987543322 122211111 1111111 12222344555567777877654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.23 E-value=1.1e-11 Score=123.72 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
...|||||||+|.++..|++. .++|+|+++.++..+. +.+.+.++. +.+..+|+..|. +++++||.|++.+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 458999999999999999874 7999999999998887 556667776 566667776665 88999999999875
Q ss_pred Ccccccch--------HHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+|.... ..+|.++.|+|||||.|+|.+
T Consensus 109 -~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7776432 479999999999999999873
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=8.2e-12 Score=124.91 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCC---ceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI---VFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~---SFDlVvss 460 (796)
+++.+|||||||+|.++.+|++. .|+|+|+++.|+..++ +.+..++ .+.+...+....+.... .+|+|++.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEec
Confidence 57899999999999999988863 6999999999999887 4455554 44556666655544433 45555553
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++++.+...+|.+++|+|||||+|++..
T Consensus 133 ---~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 ---IAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp ---CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 3444577899999999999999999863
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.22 E-value=2.3e-11 Score=123.47 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC-CC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RL 447 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e-~L 447 (796)
....|...+..+. .+++.+|||||||+|.++..|++. .|+|+|+++.|+..+. ..|..+. ....+..+.. ..
T Consensus 59 laA~i~~gl~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~ 135 (230)
T d1g8sa_ 59 LAAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAERE-NIIPILGDANKPQ 135 (230)
T ss_dssp HHHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTCT-TEEEEECCTTCGG
T ss_pred HHHHHHhhHHhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhhc-ccceEEEeeccCc
Confidence 3344555444322 357899999999999999999874 6999999999988776 3344333 2344455543 33
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.+..||++++.. .+++..++..++.+++|+|||||+|+++.
T Consensus 136 ~~~~~~~~v~~i~~-~~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 136 EYANIVEKVDVIYE-DVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp GGTTTCCCEEEEEE-CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEEeec-cccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 45566777666543 35666678899999999999999999874
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.9e-12 Score=129.32 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCe---------------------------
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPA--------------------------- 437 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~--------------------------- 437 (796)
.++.+|||||||+|.++..++.. .|+|+|+|+.++..|+.... ......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK-KEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH-TCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh-hccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 34679999999999988777653 69999999999998874432 221110
Q ss_pred ----EEEEc----CCCCCCCCCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 438 ----ISAVM----GTERLPFPGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 438 ----~~~v~----d~e~LPfpd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..... +....|++.++||+|++.++ +++.. +...+|+++.|+|||||+|++...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhh-HHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 01111 12334788899999999885 55442 557899999999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=4.2e-11 Score=119.79 Aligned_cols=107 Identities=17% Similarity=0.055 Sum_probs=79.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e 445 (796)
.....+.+.+.. +++.+|||||||+|.++..|++. .|+++|+++.++..|+... ...++. +.+...+..
T Consensus 62 ~~~a~~l~~l~l----~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~-~~~~~~n~~~~~~d~~ 136 (213)
T d1dl5a1 62 SLMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-ERLGIENVIFVCGDGY 136 (213)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGG
T ss_pred hhhHHHHHhhhc----cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhH-hhhcccccccccCchH
Confidence 444555666553 56899999999999999988763 5999999999998887554 445554 455666666
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..++..++||+|++..+ +++.+ .++.++|||||+|++.
T Consensus 137 ~~~~~~~~fD~I~~~~~-~~~~p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVG-VDEVP------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCGGGCCEEEEEECSB-BSCCC------HHHHHHEEEEEEEEEE
T ss_pred Hccccccchhhhhhhcc-HHHhH------HHHHHhcCCCcEEEEE
Confidence 66677789999999863 44332 3567889999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=9.8e-11 Score=121.13 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=85.1
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-C--CCeEEEEcCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-G--IPAISAVMGTER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-g--l~~~~~v~d~e~ 446 (796)
..|...+.. .++.+|||+|||+|+++.+|+.. .|+++|+++.++..|+..+.... + ..+.+.+.|...
T Consensus 86 s~Ii~~l~i----~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 86 AQIVHEGDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 161 (264)
T ss_dssp HHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHhCC----CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence 344444443 57899999999999999999864 79999999999988875544332 1 235667777888
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++++++||+|++.. ++|..+|.++.|+|||||+|++..+
T Consensus 162 ~~~~~~~fDaV~ldl------p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 162 SELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCCcceEEEec------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 899999999998742 4788999999999999999987643
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.15 E-value=1.9e-10 Score=117.88 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
...++|||||||+|.++..|+++ .++++|+ |.++..++...+ ..++. +.+...+.. .|.| ..||+|++..
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~-~~~~~~ri~~~~~d~~-~~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFF-KPLP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-SCCS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh-hcCCcceeeeeeeecc-cccc-ccchhhhccc
Confidence 34679999999999999999875 6889998 666666664443 44443 334444432 2444 4599999987
Q ss_pred CCcccccc--hHHHHHHHHhhcCCCcEEEEEeCCCCC--CchHHHHHHHHHHHHHH-hhcceeehhhhhhccceeEEEEE
Q 003776 462 CRVPWHIE--GGKLLLELNRVLRPGGFFIWSATPVYQ--KLPEDVEIWNAMSQLIK-AMCWELVSISKDTINKVGIAVYR 536 (796)
Q Consensus 462 ~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~~~~~--~l~El~~~~~~le~l~~-~~~W~~v~~~~~~l~dvG~~L~r 536 (796)
+ +|...+ ...+|++++|+|||||+|++....... ........+..+.-+.. ...-.....+...+.+.||.+.+
T Consensus 156 v-Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 156 V-LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred c-ccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence 5 443333 357899999999999999987543222 11111111111111111 11112344556677888887766
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=1.1e-10 Score=116.19 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
...|||||||+|.++..|+.. .++|+|+++.++..+. ..+.+.++. +.+...++..|. +++.++|.|++.+.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 458999999999999999874 7999999999988886 555566665 566677776665 78899999999875
Q ss_pred Ccccccch--------HHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+|.... ..+|..+.|+|||||.|+|.+
T Consensus 111 -dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7775422 589999999999999999873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.5e-10 Score=119.70 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTE 445 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e 445 (796)
..|.+.|.+.... .++.+|||||||+|.++..++++ .|+++|.++.+.. ++ +.+...+. .+.+...+..
T Consensus 21 ~~y~~ai~~~~~~----~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~ 94 (311)
T d2fyta1 21 ESYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhcccc----CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHH
Confidence 4566666655443 24789999999999999988875 7999999997654 33 23333333 3567778889
Q ss_pred CCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.++++..+||+|+|... .+... .+..++..+.|+|||||+++.
T Consensus 95 ~l~~~~~~~D~Ivse~~-~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 95 EVHLPVEKVDVIISEWM-GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TSCCSCSCEEEEEECCC-BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HhcCccccceEEEEeee-eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999999999641 22111 345777778999999999983
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.5e-10 Score=122.99 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=88.6
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH------H-
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL------E- 432 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~------e- 432 (796)
..+.......++.+.+.+.. +++.+|||||||+|.++..++.. .++|+|+++.++..|+..... .
T Consensus 130 ~~~~e~~~~~~~~~~~~~~l----~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~ 205 (328)
T d1nw3a_ 130 EVYGETSFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY 205 (328)
T ss_dssp TCCCCCCHHHHHHHHHHSCC----CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHcCC----CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence 34444445556666666653 46889999999999999887652 699999999998887644322 1
Q ss_pred --cCCCeEEEEcCCCCCCCCCCce--eEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 433 --RGIPAISAVMGTERLPFPGIVF--DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 433 --rgl~~~~~v~d~e~LPfpd~SF--DlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+..++.+..+|+..+|+.+..| |+|+++. +.+..++...|.++.|+|||||+++..
T Consensus 206 g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 206 GKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TCCCCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 1234678888888888877665 5666653 444457889999999999999999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=2.9e-10 Score=119.75 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||||||+|.++..++++ .|+++|.++.+ ..+. +.+...++. +.+...+...++++.++||+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~-~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhh-hHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 4789999999999999888874 69999999854 3443 444555543 567778889999999999999986421
Q ss_pred -ccccc-chHHHHHHHHhhcCCCcEEE
Q 003776 464 -VPWHI-EGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 464 -l~w~~-d~~~~L~Ei~RVLKPGG~fv 488 (796)
..++. ....++..+.|+|||||.++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 11222 56889999999999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=3.2e-10 Score=119.93 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
.|.+.|.+.... .++.+|||||||+|.++..++++ .|+++|.++ ++..++ +.+...+. .+.+...+...
T Consensus 25 ~y~~aI~~~~~~----~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~-~~~~~~~~~~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 25 SYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhcccc----CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHH-HHHHHhCccccceEEEeehhh
Confidence 444555443332 24789999999999999888875 699999997 555554 44445554 35677788899
Q ss_pred CCCCCCceeEEEEcCC--CcccccchHHHHHHHHhhcCCCcEEE
Q 003776 447 LPFPGIVFDAVHCARC--RVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 447 LPfpd~SFDlVvss~~--~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
+++++.+||+|++... .+..-.....++..+.|+|||||.++
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9999999999999642 12222256788999999999999987
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.03 E-value=2.7e-10 Score=116.85 Aligned_cols=98 Identities=11% Similarity=0.188 Sum_probs=77.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++.+|||+|||+|.++.+|++. .|+++|+++.++..|+..+....+. .+.+...|.... +++.+||+|++..
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld~ 162 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIADI 162 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEECC
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeecC
Confidence 57899999999999999998863 6999999999988887555443333 345666666554 5678999999753
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..+|.++.++|||||+|++..+
T Consensus 163 ------p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 163 ------PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ------CchHHHHHHHHHhcCCCceEEEEeC
Confidence 3677899999999999999998644
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=5.6e-11 Score=122.05 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC-----------------------------
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI----------------------------- 435 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl----------------------------- 435 (796)
..+.+|||||||+|.+...++.. +|+++|+|+.|+..++.......+.
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 35789999999999877655532 7999999999998886432211100
Q ss_pred C-eEEEEcCC------CCCCCCCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 436 P-AISAVMGT------ERLPFPGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 436 ~-~~~~v~d~------e~LPfpd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ......|. ...+++.++||+|++.++ +++.. +...+|+++.++|||||+|++...
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHH-HHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0 01122332 223455678999999986 55543 457899999999999999998754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=2.4e-10 Score=115.59 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=80.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC---CC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~---e~ 446 (796)
..|..-+..+. .+++.+|||+|||+|.++.+|++. .|+++|+++.++..++ ..+..++ .......+. ..
T Consensus 60 a~i~~~l~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~ 136 (227)
T d1g8aa_ 60 AAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEE 136 (227)
T ss_dssp HHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGG
T ss_pred HHHHccccccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCccc
Confidence 44554444322 357899999999999999999873 7999999999998876 4444333 233444443 33
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.....+|+|++.. +.+.+...++.+++++|||||+|+++.
T Consensus 137 ~~~~~~~vD~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 137 YRALVPKVDVIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTTTCCCEEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceEEEEEEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 445557899998853 445577889999999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=8e-10 Score=111.34 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=79.0
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-----CCCeEEEEc
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVM 442 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-----gl~~~~~v~ 442 (796)
....+.+.|.. ..+++.+|||||||+|++++.|++. .|+++|+++.++..|+..+.+.. .....+...
T Consensus 62 ~~a~~le~L~~--~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g 139 (224)
T d1i1na_ 62 MHAYALELLFD--QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG 139 (224)
T ss_dssp HHHHHHHHTTT--TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred HHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence 34455555532 1246889999999999998888763 79999999999988875554321 123456677
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|....+++.++||+|++..+ +++. ..++.+.|||||+|++.
T Consensus 140 D~~~~~~~~~~fD~I~~~~~-~~~i------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 140 DGRMGYAEEAPYDAIHVGAA-APVV------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp CGGGCCGGGCCEEEEEECSB-BSSC------CHHHHHTEEEEEEEEEE
T ss_pred ecccccchhhhhhhhhhhcc-hhhc------CHHHHhhcCCCcEEEEE
Confidence 77777777889999999863 4432 23578999999999975
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=6.1e-10 Score=115.14 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=78.7
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF 449 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPf 449 (796)
.|...+.. .++.+|||+|||+|.++.+|++. .|+++|+++.++..|+.. ....++. ............+
T Consensus 94 ~Ii~~l~i----~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~-~~~~g~~~~v~~~~~d~~~~~ 168 (266)
T d1o54a_ 94 FIAMMLDV----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEGF 168 (266)
T ss_dssp HHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGCC
T ss_pred HHHHhhCC----CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-HHHhccccCcEEEeccccccc
Confidence 44444443 57899999999999999999763 699999999999988844 4455553 2333332223356
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+...||.|+... +++..+|.++.++|||||+|++..+
T Consensus 169 ~~~~~D~V~~d~------p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 169 DEKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp SCCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cccceeeeEecC------CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 678899998643 4788999999999999999997643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=1.5e-09 Score=118.30 Aligned_cols=122 Identities=9% Similarity=-0.022 Sum_probs=83.3
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH------c
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE------R 433 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e------r 433 (796)
..|......++..+.+.+.. +++.+|||||||+|.++..++.. .|+|+|+++.++..|+.+.... .
T Consensus 195 ~vYGEl~~~~i~~Il~~l~L----kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~ 270 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY 270 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHhCC----CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhh
Confidence 44555556667777777653 56889999999999999888753 6999999999998887554321 1
Q ss_pred CC---CeEEE-EcCCCCCCCC---CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 434 GI---PAISA-VMGTERLPFP---GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 434 gl---~~~~~-v~d~e~LPfp---d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. ...+. ..+....++. -..+|+|+++. +.+..++...|.++.|+|||||+|+.+.
T Consensus 271 g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 271 GMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp TBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 21 12222 2222222211 12478888764 4445578899999999999999998653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.6e-08 Score=104.86 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
...+|||+|||+|.++..|+.. .|+++|+++..+..|+ +.|...++. +.+...|... +++++.||+|+|+..+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 4678999999999999988763 8999999999999888 667777775 5565565422 4556799999999766
Q ss_pred ccccc----------c--------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHI----------E--------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~----------d--------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.-.. + ...++.++.+.|+|||.|++.
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 54220 0 125778889999999999986
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.82 E-value=5.6e-09 Score=105.23 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=74.2
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
....+.+.+.. +++.+|||||||+|++++.|+.. .|+++|+++..+..|+..++ ....+.+...+.......
T Consensus 58 ~~a~ml~~L~l----~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~~ 131 (224)
T d1vbfa_ 58 LGIFMLDELDL----HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYEE 131 (224)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCGG
T ss_pred hHHHHHHHhhh----cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh--cccccccccCchhhcchh
Confidence 33445565543 56889999999999999988874 89999999988877764332 233456666665333334
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+.||.|++..+ +... ...+.+.|||||+|++-
T Consensus 132 ~~pfD~Iiv~~a-~~~i------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWAT-APTL------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp GCCEEEEEESSB-BSSC------CHHHHHTEEEEEEEEEE
T ss_pred hhhHHHHHhhcc-hhhh------hHHHHHhcCCCCEEEEE
Confidence 578999999764 4432 23456889999999974
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=6.2e-09 Score=110.37 Aligned_cols=99 Identities=17% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-----------CCCeEEEEcCCCCC--CC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-----------GIPAISAVMGTERL--PF 449 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-----------gl~~~~~v~d~e~L--Pf 449 (796)
.++.+|||+|||+|.++.+|++. .|+++|+++.++..|+..+.... .-.+.+...+.... .+
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 46899999999999999999874 69999999999988886554321 11245666665444 34
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..||.|+.-. ++|..+|.++.++|||||+|++-.+
T Consensus 177 ~~~~fD~V~LD~------p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 177 KSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ----EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCcceEeecC------cCHHHHHHHHHHhccCCCEEEEEeC
Confidence 677899998743 3566799999999999999997543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=2.3e-08 Score=105.67 Aligned_cols=130 Identities=17% Similarity=0.037 Sum_probs=88.3
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AIS 439 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~ 439 (796)
.|..........+.+.+. ++.+|||+|||+|.++..++.+ .|+++|+++..+..++ +.+...|+. +.+
T Consensus 127 G~flDqr~~r~~~~~~~~------~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~ 199 (324)
T d2as0a2 127 GFFLDQRENRLALEKWVQ------PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKF 199 (324)
T ss_dssp CCCSTTHHHHHHHGGGCC------TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEE
T ss_pred CcccchhhHHHHHHhhcC------CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCcccee
Confidence 343444444445544432 4789999999999999988764 7999999999998887 556666764 455
Q ss_pred EEcCCC----CCCCCCCceeEEEEcCCCccccc--------chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHH
Q 003776 440 AVMGTE----RLPFPGIVFDAVHCARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPED 501 (796)
Q Consensus 440 ~v~d~e----~LPfpd~SFDlVvss~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El 501 (796)
...|.. .++.....||+|++....+.-+. +...++..+.++|||||+|+++.....-...++
T Consensus 200 ~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f 273 (324)
T d2as0a2 200 IVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF 273 (324)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHH
T ss_pred eechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHH
Confidence 666642 23445678999999653222111 124578888999999999998865544444443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=2.6e-08 Score=105.13 Aligned_cols=111 Identities=18% Similarity=0.080 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC----CCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER----LPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~----LPfpd~SFDlVvss~ 461 (796)
.+.+|||++||+|.++.+++.. .|+++|+++.++..++ +.+...|+. +.+...+... ++.....||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 4789999999999999988753 8999999999999888 555667775 5566666422 445567899999864
Q ss_pred CCccccc--------chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 462 CRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 462 ~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
....-.. +...++..+.++|||||.|++++....-...+
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~ 270 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPL 270 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHH
Confidence 2221111 22467888999999999999886544333333
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=4.6e-08 Score=97.81 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL 447 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L 447 (796)
.....+.+.+.. +++.+|||||||+|++++.|+.. .|++++..+..+..++ +...+.++. +.+...|....
T Consensus 65 ~~~a~ml~~L~l----~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~-~~l~~~g~~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 65 HMVAIMLEIANL----KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAK-RNLERAGVKNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHHTC----CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGC
T ss_pred hhHHHHHHhhcc----CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHH-HHHHHcCCceeEEEECccccC
Confidence 334455555543 56889999999999999888753 6999999998877777 444455654 55666665444
Q ss_pred CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
....+.||.|++..+ +... +.. +...|||||++++-
T Consensus 140 ~~~~~pfD~Iiv~~a-~~~i--p~~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAG-APKI--PEP----LIEQLKIGGKLIIP 175 (215)
T ss_dssp CGGGCCEEEEEECSB-BSSC--CHH----HHHTEEEEEEEEEE
T ss_pred CcccCcceeEEeecc-cccC--CHH----HHHhcCCCCEEEEE
Confidence 445688999999753 5432 222 45679999999964
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.60 E-value=5.9e-08 Score=97.49 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=75.2
Q ss_pred HHHHHHHhCc-ccccCCCCCEEEEECCCCchhHHHHhhC----------CeEEEeCChhhHHHHHHHHHHH----cC-CC
Q 003776 373 YIDFIQESVP-DVAWGKRTRVVLDVGCGVASFGGFLFDR----------GVLTMSFAPKDEHEAQVQFALE----RG-IP 436 (796)
Q Consensus 373 yid~L~e~Lp-~i~~~~~~~~VLDIGCGtG~~a~~La~~----------~V~gvDiSp~dl~~A~~q~A~e----rg-l~ 436 (796)
....+.+.+. .+ +++.+|||||||+|++++.|+.. +|+++|+.+..+..|+...... .+ ..
T Consensus 66 ~~a~~l~~L~~~l---~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 66 MHAFALEYLRDHL---KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHTTTTC---CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHhhcc---CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence 3445555552 22 46889999999999999888763 5999999998888776443221 12 24
Q ss_pred eEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+...|......+.+.||.|++..+ +...+ ..+.+.|||||++++-
T Consensus 143 v~~~~~d~~~~~~~~~~fD~Iiv~~a-~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 143 LLIVEGDGRKGYPPNAPYNAIHVGAA-APDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSC-BSSCC------HHHHHTEEEEEEEEEE
T ss_pred EEEEecccccccccccceeeEEEEee-chhch------HHHHHhcCCCcEEEEE
Confidence 56666776555556678999999763 43221 2467899999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=1.1e-07 Score=97.63 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=82.5
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AI 438 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~ 438 (796)
+.|..+.......+.+.+. ++.+|||+|||+|.++..++.+ .|+++|+++..+..++ +.+...++. +.
T Consensus 88 ~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~-~N~~~n~l~~~v~ 160 (260)
T d2frna1 88 IMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMS 160 (260)
T ss_dssp SCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEE
T ss_pred ccEecCCHHHHHHHHhhcC------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH-HHHHHhCCCceEE
Confidence 3444444433444555543 4889999999999999988753 7999999998887776 555666664 45
Q ss_pred EEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 439 SAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 439 ~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++.+|+..++. .+.||.|++.. .+ ....+|.++.++|+|||++.+.
T Consensus 161 ~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 161 AYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred EEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEE
Confidence 66677766654 47899999875 22 3456788899999999998754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=8.8e-08 Score=92.08 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC----CCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE----RLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e----~LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++.+ .++++|.++.++..++ +.++..++.......+.. .+......||+|++...
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLK-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhh-HHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 4779999999999999887765 7899999999988887 445566776555554432 12345578999999753
Q ss_pred CcccccchHHHHHHH--HhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLEL--NRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei--~RVLKPGG~fv~s 490 (796)
++.+....+.++ ..+|+|||++++.
T Consensus 120 ---Y~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 120 ---YAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp ---TTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred ---cccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence 344555555555 3579999999986
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.42 E-value=1.4e-07 Score=92.33 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCch----hHHHHhhC--------CeEEEeCChhhHHHHHHHH-------------HHHc----CC--C-
Q 003776 389 RTRVVLDVGCGVAS----FGGFLFDR--------GVLTMSFAPKDEHEAQVQF-------------ALER----GI--P- 436 (796)
Q Consensus 389 ~~~~VLDIGCGtG~----~a~~La~~--------~V~gvDiSp~dl~~A~~q~-------------A~er----gl--~- 436 (796)
+.-+||++|||+|. ++..|.+. .|+|+|+++..+..|+... .... +. .
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 45699999999995 44444431 5999999998887775211 0000 00 0
Q ss_pred -----------eEEEEcCC-CCCCCCCCceeEEEEcCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 437 -----------AISAVMGT-ERLPFPGIVFDAVHCARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 437 -----------~~~~v~d~-e~LPfpd~SFDlVvss~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+..... ...+.+.+.||+|+|... +.+.... ..+|..++++|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNV-LiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehh-HHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 11222222 222334578999999873 4444322 68999999999999999976
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.41 E-value=8e-07 Score=93.52 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCC----CCCCCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTE----RLPFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e----~LPfpd~SFDlVv 458 (796)
++.+|||+.||+|.++.+++.. .|+++|+++..+..++... ...++. +.++..|+. .+.-....||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~-~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHH-HHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 3789999999999999887653 7999999999998887444 445543 456666652 2223456899999
Q ss_pred EcCCCccccc--------chHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 003776 459 CARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKL 498 (796)
Q Consensus 459 ss~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l 498 (796)
+....+.-.. +...++..+.++|+|||.|+++.....-..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~ 270 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTV 270 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCH
Confidence 8643221111 335688889999999999999866443333
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=3.6e-08 Score=95.95 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=69.6
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCC-CCChhHHHhhcccccccccccccCCCCccccccccccccccccCCcch
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDS-PDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNL 724 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~-~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~ 724 (796)
.|||+|||+|.|+.+|.. + .. +|. +..+.++-+|++. ++....+.++..+.+||+|++.++|.... ..
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~--~g---iD~s~~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--K--IG---VEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--C--EE---EESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccce--E--EE---EeCChhhcccccccccc-ccccccccccccccccccccccccccccc---cc
Confidence 599999999999998864 2 22 233 3677788888753 45555677777779999999999988775 36
Q ss_pred HHHHHhhcccccCCcEEEEe
Q 003776 725 VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~r 744 (796)
..+|-++-|+|||||++++.
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEE
Confidence 77899999999999999986
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.31 E-value=2e-07 Score=87.56 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++.+ +|+++|.++..+..++ +.+...++. ..++..|... ++...+.||+|++..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~-~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP- 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP- 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhh-hhhhhcccccchhhhcccccccccccccccceeEech-
Confidence 4789999999999999876654 7999999998887776 444555554 3455555433 455678899999975
Q ss_pred Cccccc-chHHHHHHH--HhhcCCCcEEEEE
Q 003776 463 RVPWHI-EGGKLLLEL--NRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~-d~~~~L~Ei--~RVLKPGG~fv~s 490 (796)
++.. .....|..+ .++|+|||.+++.
T Consensus 92 --Py~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 --PYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp --SSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred --hhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 2222 224555554 3679999999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.28 E-value=1.1e-06 Score=87.30 Aligned_cols=97 Identities=21% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-----CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-----fpd~SFD 455 (796)
++.+|||||||+|..+..|+.+ +|+++|+++.++..|+.. ....|+. +.+..++. +.|| +..+.||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~-~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQM-LNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHH-HHHcCCCccceeeeccccccccchhhcccccccc
Confidence 3679999999999999998863 799999999888887744 4445553 56666664 2222 4567899
Q ss_pred EEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 456 AVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 456 lVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+|+.-. ++. .....|.+..++|||||++++.
T Consensus 135 ~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 135 MVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeeecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 999864 333 2334677888999999998865
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=1.4e-06 Score=91.23 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC---CeEEEEcCCCC----CCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTER----LPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl---~~~~~v~d~e~----LPfpd~SFDlVvs 459 (796)
++.+|||+.||+|.++.+++.. .|++||+++..+..|+..... .++ .+.+++.|+.. +......||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 4789999999999999988875 799999999999988855444 444 35566666422 2233478999998
Q ss_pred cCCCc-------cccc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRV-------PWHI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l-------~w~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+ .|.. +...++..+.++|+|||.|++..
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 54222 2222 23456677889999999766653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=2e-06 Score=87.17 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=85.2
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
+.+.+.++. ....++|||||||+|.++..|+++ +++.+|+.. .+.. + ...-.+.+...|.. -|.|
T Consensus 70 ~~l~~~~~~---f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-----~-~~~~ri~~~~gd~~-~~~p 138 (244)
T d1fp1d2 70 KRMLEIYTG---FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIEN-----A-PPLSGIEHVGGDMF-ASVP 138 (244)
T ss_dssp HHHHHHCCT---TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT-----C-CCCTTEEEEECCTT-TCCC
T ss_pred HHHHHhccc---ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhc-----c-CCCCCeEEecCCcc-cccc
Confidence 444555542 135689999999999999999875 677777732 2111 0 01122445555542 2344
Q ss_pred CCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCCCC--CchHHHHHHHHHH---HHHHhhcceeehhh
Q 003776 451 GIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPVYQ--KLPEDVEIWNAMS---QLIKAMCWELVSIS 523 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~--~l~El~~~~~~le---~l~~~~~W~~v~~~ 523 (796)
..|++++... +|.+. +-..+|+.++++|+|||.+++.....+. ...........+. -...........++
T Consensus 139 --~~D~~~l~~v-Lh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~ 215 (244)
T d1fp1d2 139 --QGDAMILKAV-CHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQY 215 (244)
T ss_dssp --CEEEEEEESS-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHH
T ss_pred --cceEEEEehh-hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHH
Confidence 3599999875 44444 3368899999999999999987543222 1111111111111 11223334445666
Q ss_pred hhhccceeEEEEE
Q 003776 524 KDTINKVGIAVYR 536 (796)
Q Consensus 524 ~~~l~dvG~~L~r 536 (796)
..-+.++||...+
T Consensus 216 ~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 216 EKLSKLSGFSKFQ 228 (244)
T ss_dssp HHHHHHTTCSEEE
T ss_pred HHHHHHcCCCceE
Confidence 6666777765443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=3.1e-06 Score=83.06 Aligned_cols=70 Identities=13% Similarity=-0.033 Sum_probs=56.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++.+ .|+++|+++..+..++ +.+...++...+...+...++ ..||+|+++..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~~---~~fD~Vi~nPP 118 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP 118 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGCC---CCCSEEEECCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhhC---CcCcEEEEcCc
Confidence 4789999999999998877654 6999999999888776 445566777778877766553 57999999864
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.9e-06 Score=86.02 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=80.2
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMG 443 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d 443 (796)
..++..|.+.. ..++||+||||+|..+..|+.. .|+++|.++.....|+.. ..+.|+. +.+.+++
T Consensus 48 g~lL~~L~~~~-------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~-~~~ag~~~~i~~~~Gd 119 (219)
T d2avda1 48 AQLLANLARLI-------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL-WRQAEAEHKIDLRLKP 119 (219)
T ss_dssp HHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH-HHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHcc-------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHH-HHhcCccceEEEEEee
Confidence 44455554443 3679999999999999999864 799999999888887744 4445543 4555555
Q ss_pred C-CCCC-----CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 444 T-ERLP-----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 444 ~-e~LP-----fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+ +.++ ...++||+|+... +......++..+.+.|+|||++++....
T Consensus 120 a~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 120 ALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 4 2222 3457899999864 3445678899999999999999987543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=1.3e-06 Score=85.45 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlVv 458 (796)
.++..+||++||+|.++..++++ .|+++|.++.++..++..+ ...+..+.++......+ .+..++||.|+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l-~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh-ccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 46789999999999999988874 7999999999988777433 23344556666654443 34467899998
Q ss_pred EcCCCccc---------ccchHHHHHHHHhhcCCCcEEEEE
Q 003776 459 CARCRVPW---------HIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 459 ss~~~l~w---------~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.-+. +.- .......|..+.++|+|||.+++.
T Consensus 101 ~DlG-vSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii 140 (192)
T d1m6ya2 101 MDLG-VSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI 140 (192)
T ss_dssp EECS-CCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred eccc-hhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence 7654 211 113357889999999999999875
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.5e-05 Score=80.83 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCccccc-CCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe--EEEEcC
Q 003776 371 LHYIDFIQESVPDVAW-GKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMG 443 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~-~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~--~~~v~d 443 (796)
..|...+...+..... .....+|||||||+|.++..|+.+ .++|+|+++..+..|+ +.+...++.. .+...+
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~-~N~~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK-KNVEQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH-HHHHHhCCCcceeeeeec
Confidence 3455555555432211 134579999999999998888764 8999999999999888 5555566553 223322
Q ss_pred CC-CC-----CCCCCceeEEEEcCCCc
Q 003776 444 TE-RL-----PFPGIVFDAVHCARCRV 464 (796)
Q Consensus 444 ~e-~L-----Pfpd~SFDlVvss~~~l 464 (796)
.. .+ ....+.||+|+|+..++
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred cHHhhhhhhhhcccCceeEEEecCccc
Confidence 21 11 23456899999998654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.12 E-value=1.7e-07 Score=95.87 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=64.2
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHh----hcc---cccc-cccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYE----RGL---FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
=..|||+|||.|+++..|.++ +.-|+-|-+. +..+..+-+ +|| |-++ .|++ .+|.-+.+||+|.+.++
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIA--PVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEESC
T ss_pred CCEEEEeCCCCcHHHhhhhccCCcEEEEEecc--chhhhhhhcccccccccccccccccccc-cccccccccchhhccch
Confidence 457999999999999998764 4333322222 234444333 354 2222 3443 34543589999999888
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|-.+. ....+|-|+-|+|||||+|++.
T Consensus 145 l~h~~---d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 145 FLHSP---DKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHhcCCCcEEEEE
Confidence 86664 3567899999999999999985
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.12 E-value=2.5e-07 Score=90.88 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=63.2
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHH----Hhhcc--cccccccccccCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPII----YERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i----~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||.|.|+.+|.+..--|.-|-+. +..+..+ ...|+ |-+++.=.+.+|.-+.+||+|++.++|....
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~ 95 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVKKVVAFDLT--EDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP 95 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred EEEEecccCcHHHHHHHHhCCEEEEEECC--HHHHhhhhhcccccccccccccccccccccccccccccccccccccccC
Confidence 59999999999998887764333333221 1333332 23444 2333332344553358999999988887654
Q ss_pred CCcchHHHHHhhcccccCCcEEEEec
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
....+|-|+-|+|+|||+++|.+
T Consensus 96 ---d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 96 ---NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 46678999999999999999853
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=4.4e-06 Score=85.96 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCC-CCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGT-ERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~-e~LPfpd~SFDlVvss~~ 462 (796)
...+|||+|||+|..+..++.. .|+++|+++..+..|+ +.|...++... +...+. ..++...+.||+|+|+..
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 3568999999999888877653 7999999999998887 66777776543 333333 223333468999999976
Q ss_pred Cccccc--------chH----------HHHHH-HHhhcCCCcEEEEEe
Q 003776 463 RVPWHI--------EGG----------KLLLE-LNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~--------d~~----------~~L~E-i~RVLKPGG~fv~s~ 491 (796)
++.-.. +|. .++++ +.+.|+|||+|++-.
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 554321 111 23333 568899999999873
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=2.9e-07 Score=95.25 Aligned_cols=98 Identities=10% Similarity=0.143 Sum_probs=72.7
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCCCChh----HHHhhcccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLP----IIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
=-.|||+|||.|+|+.++.+. ++-|.-|.... +++. .+.+.||....+..+.-+..+|.+||.|-+..+|-..
T Consensus 53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~--~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CCEEEEecCCchHHHHHHHHhCceeEEEecchH--HHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 345999999999999888754 65554444332 4444 4555688666665566666778999999988888776
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..+ .+..+|-++.|+|+|||.++|.
T Consensus 131 ~~~-~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 131 GHE-NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhh-hHHHHHHHHHhccCCCceEEEE
Confidence 543 4677899999999999999985
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=4.1e-06 Score=80.87 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=80.0
Q ss_pred CcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHH
Q 003776 354 GEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 354 g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A 430 (796)
+..+.+|.+.. .++-.......|...+.... .+.+|||++||+|.++...+.+ .|+.+|.++..+..++.. +
T Consensus 12 g~~l~~~~~~~-~RPt~~~vre~lfn~l~~~~---~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N-~ 86 (183)
T d2fpoa1 12 GRKLPVPDSPG-LRPTTDRVRETLFNWLAPVI---VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-L 86 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-H
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHhhhhccc---chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHH-H
Confidence 34444554321 22323333344444443211 3679999999999999877765 799999999888877744 4
Q ss_pred HHcCCC-eEEEEcCC-CCCCCCCCceeEEEEcCCCccccc-chHHHHHHHH--hhcCCCcEEEEE
Q 003776 431 LERGIP-AISAVMGT-ERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELN--RVLRPGGFFIWS 490 (796)
Q Consensus 431 ~ergl~-~~~~v~d~-e~LPfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~--RVLKPGG~fv~s 490 (796)
...+.. ......|+ ..+......||+|++... +.. ....+|..+. .+|+|+|++++.
T Consensus 87 ~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 87 ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP---FRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS---SSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhccccceeeeeecccccccccccccCEEEEcCc---cccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 445543 34444553 233445678999999763 333 3456666655 469999999986
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=3.9e-07 Score=90.41 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=65.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcc--cccccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-|||+|||.|.++..|.++- =+|+-+|-. ..|.++- ++|+ +-++..=.+.+|.-..+||+|.+.++|...
T Consensus 19 rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 95 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF 95 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeecc
Confidence 38999999999999998753 244445544 5555443 3443 333332234455334899999998888654
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. ....+|=|+.|+|||||++++.
T Consensus 96 ~---d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 96 S---DVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHeeCCCcEEEEE
Confidence 3 4678899999999999999985
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.06 E-value=5e-06 Score=86.73 Aligned_cols=103 Identities=14% Similarity=0.010 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVv 458 (796)
..+.+|||.|||+|.++..+..+ .++|+|+++.++..|+... ...+........+.... .+...||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~-~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA-DLQRQKMTLLHQDGLAN-LLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCTTSC-CCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHH-HHhhhhhhhhccccccc-cccccccccc
Confidence 45679999999999998877531 5899999998887776443 33455555666654322 3456899999
Q ss_pred EcCCCccccc----------------ch-HHHHHHHHhhcCCCcEEEEEeC
Q 003776 459 CARCRVPWHI----------------EG-GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 459 ss~~~l~w~~----------------d~-~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..+..... +. ..++..+.+.|+|||++++..+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 9875322111 11 1357889999999999887654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.06 E-value=6e-06 Score=81.12 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=50.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++.+ .|+++|+++..+..++ +....+.+...|...++ +.||+|+++..
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar-----~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK-----RNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH-----HHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHH-----HccccccEEEEehhhcC---CcceEEEeCcc
Confidence 3789999999999988766653 6999999997765554 33334577788877765 67999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=3.9e-07 Score=91.15 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=67.5
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCCCChhHHHhh----ccc----ccccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSPDTLPIIYER----GLF----GIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~~~l~~i~eR----Gli----g~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
-.|||+|||.|+++.+|.. .+..|.-|-|. +..+..+-++ ||- -+..|+.+-+ .+..||+|++.++|
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~ 110 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVAACVGAT 110 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEEEEESCG
T ss_pred CEEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEEEEEehh
Confidence 3599999999999998865 47777666442 2445444343 642 2445665543 36899999988888
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+. ....+|-||-|+|||||+++|.+
T Consensus 111 ~~~~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 111 WIAG---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hccC---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 7655 35678999999999999999963
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.91 E-value=9.6e-06 Score=83.43 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=76.6
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH----------cCCCeE
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE----------RGIPAI 438 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e----------rgl~~~ 438 (796)
.|.+.|... +... .+...+||.||+|.|..+..+++. +|+++++++..+..++.-+... ....+.
T Consensus 57 ~Yhe~l~~~-~l~~-~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~ 134 (276)
T d1mjfa_ 57 SYHEPLVHP-AMLA-HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK 134 (276)
T ss_dssp HHHHHHHHH-HHHH-SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEE
T ss_pred HHHHHhhcc-hhhc-CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCce
Confidence 455555432 2111 245789999999999999988775 6899999998887776332111 123456
Q ss_pred EEEcCCCCCCCCCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 439 SAVMGTERLPFPGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 439 ~~v~d~e~LPfpd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++..|+...--..+.||+|++-.. -+... .-..+++.+.+.|+|||.|++..
T Consensus 135 i~~~Da~~~l~~~~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 135 LTIGDGFEFIKNNRGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEESCHHHHHHHCCCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEChHHHHHhccCCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 666664221112468999998542 22211 22578999999999999999754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.90 E-value=1.7e-05 Score=76.55 Aligned_cols=128 Identities=14% Similarity=0.049 Sum_probs=82.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHH
Q 003776 355 EYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFAL 431 (796)
Q Consensus 355 ~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ 431 (796)
..+.+|.+. ..++-....-..|..+|... -.+.+|||++||+|.++...+.+ .|+.+|.++..+..++.. +.
T Consensus 11 ~~l~~~~~~-~~RPt~~~vrealFn~l~~~---~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N-~~ 85 (182)
T d2fhpa1 11 RRLKALDGD-NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKEN-IA 85 (182)
T ss_dssp CBCCCCCCC-SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HH
T ss_pred CEecCCCCC-CcCcCcHHHHHHHHHHHHHh---cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHH-hh
Confidence 344444332 22333344445555555431 24789999999999999987775 799999999888777643 34
Q ss_pred HcCCC--eEEEEcCCCC-C---CCCCCceeEEEEcCCCccccc-chHHHHHHHH--hhcCCCcEEEEE
Q 003776 432 ERGIP--AISAVMGTER-L---PFPGIVFDAVHCARCRVPWHI-EGGKLLLELN--RVLRPGGFFIWS 490 (796)
Q Consensus 432 ergl~--~~~~v~d~e~-L---Pfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~--RVLKPGG~fv~s 490 (796)
..+.. ..+...|+.. | .-....||+|++.. ++.. +....|..+. .+|+|+|++++.
T Consensus 86 ~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 86 ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 34443 4556666422 2 22345799999975 3333 4467777765 479999999976
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.90 E-value=2.6e-05 Score=75.57 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=70.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
...++|.+.+.. ..+.+|||.|||+|.|+..+.++ .++++|+++..+..+ ........+...
T Consensus 6 ~i~~~m~~l~~~----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~ 72 (223)
T d2ih2a1 6 EVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLL 72 (223)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGG
T ss_pred HHHHHHHHhcCC----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhc
Confidence 345667776653 45789999999999998887653 599999988543211 123444454433
Q ss_pred CCCCCCceeEEEEcCCCccccc---------------------------ch-HHHHHHHHhhcCCCcEEEEEeCC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHI---------------------------EG-GKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~---------------------------d~-~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.. ....||+|+++........ +. ..++....+.|+|||++++..+.
T Consensus 73 ~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 73 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 32 3468999999864322110 01 24567788999999999877543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.89 E-value=1e-06 Score=88.87 Aligned_cols=100 Identities=24% Similarity=0.471 Sum_probs=68.1
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChh----HHHhhccccc----ccccccccCCCCccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLP----IIYERGLFGI----YHDWCESFSTYPRTYDL 708 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~----~i~eRGlig~----~~~~ce~f~typrtyDl 708 (796)
+.|..++.|||+|||.|.++.+|..+ .+-+.-+ |-+..+. .+-+.|+..- -+|. |...|..||+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~ 149 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL---EMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADA 149 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEc---cCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchhh
Confidence 57889999999999999999998754 2332211 2223333 3445565332 2333 3444678999
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|.+.++|-.|... ....+|-++=|.|||||.++|.|
T Consensus 150 v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 150 IILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9988888776433 23457999999999999999853
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.88 E-value=1.1e-05 Score=80.93 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMG 443 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d 443 (796)
..++..|.+.. ..++||+||+++|..+..|+. ..|+++|.++.....|+..+ .+.|+. +.+...+
T Consensus 48 g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~-~~~g~~~~i~~~~g~ 119 (227)
T d1susa1 48 GQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREGP 119 (227)
T ss_dssp HHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEESC
T ss_pred HHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHH-HHhccccceeeeehH
Confidence 34555555543 367999999999998888875 28999999998877776444 455554 4555555
Q ss_pred C-CCCC------CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 444 T-ERLP------FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 444 ~-e~LP------fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ +.|+ ...++||+|+.-. ++.....++..+.+.|+|||.+++...
T Consensus 120 a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 120 ALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 4 2222 1246899999864 455678899999999999999998744
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=1.7e-06 Score=89.87 Aligned_cols=97 Identities=8% Similarity=0.133 Sum_probs=71.2
Q ss_pred cccccCccccceeeecc-CCCeEEEEeecCCCCCChh----HHHhhcccccccccccccCCCCccccccccccccccccC
Q 003776 646 NVMDMRSVYGGFAAAMK-DISVWVMNVISIDSPDTLP----IIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~-~~~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.|||+|||.||++.+|. ..++-|.-|.... .|+. .+.+.||....+.-+.-+++.+.+||-|=+-+.|-...+
T Consensus 64 ~VLDiGCG~G~~~~~~a~~~g~~v~git~s~--~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~~~ 141 (291)
T d1kpia_ 64 TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFAD 141 (291)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTC
T ss_pred EEEEecCcchHHHHHHHHhcCcceeeccchH--HHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhcch
Confidence 49999999999998886 4476555554333 3443 455668877666556666766789998888888776654
Q ss_pred C------cchHHHHHhhcccccCCcEEEEe
Q 003776 721 R------CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 r------C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ =....++=++.|+|+|||.++|.
T Consensus 142 ~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 142 GAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 3 23467899999999999999985
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.83 E-value=2.2e-05 Score=79.13 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||||||+|.++..++++ ++++.|+.. .+ +.+. ..-.+.+...|... |.+ .+|++++... +
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-----~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~v-L 148 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-----ENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYI-L 148 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-----TTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESC-G
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-----HhCc-ccCceEEEecCccc-CCC--CCcEEEEEee-c
Confidence 4578999999999999999875 788888732 22 1111 11235556666533 333 4799999875 4
Q ss_pred ccccch--HHHHHHHHhhcCCC---cEEEEEeCCC
Q 003776 465 PWHIEG--GKLLLELNRVLRPG---GFFIWSATPV 494 (796)
Q Consensus 465 ~w~~d~--~~~L~Ei~RVLKPG---G~fv~s~~~~ 494 (796)
|...+. ..+|+.+++.|+|| |++++.....
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~ 183 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 183 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence 444333 58899999999999 7777765443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=4.7e-05 Score=78.99 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=91.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~LPfpd~SFDlVv 458 (796)
+.+++||-||.|.|..+..+++. .|+++|+++..+..++.-+.... ...+.+...|+ .-+.-..+.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45789999999999999999875 68999999988887764443322 23456666764 22323347899999
Q ss_pred EcCCCccc-----ccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhh---h--cc
Q 003776 459 CARCRVPW-----HIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD---T--IN 528 (796)
Q Consensus 459 ss~~~l~w-----~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~---~--l~ 528 (796)
+-.. -++ +.-...+++.+.+.|+|||.|++.....+..........+.+... ++.+..+.. . ..
T Consensus 168 ~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-----F~~v~~y~~~vPtyp~G 241 (295)
T d1inla_ 168 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-----FPITRVYLGFMTTYPSG 241 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-----CSEEEEEEEECTTSTTS
T ss_pred EcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-----cceeEEEEeeeceecCc
Confidence 8531 121 112368999999999999999976433222223333333333222 333322211 1 24
Q ss_pred ceeEEEEEecCC
Q 003776 529 KVGIAVYRKPTS 540 (796)
Q Consensus 529 dvG~~L~rkgf~ 540 (796)
.+||.+..++..
T Consensus 242 ~w~f~~aSk~~~ 253 (295)
T d1inla_ 242 MWSYTFASKGID 253 (295)
T ss_dssp EEEEEEEESSCC
T ss_pred ccEEEEEeCCCC
Confidence 677887776544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.81 E-value=2.4e-06 Score=83.82 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=65.9
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhccc-ccccccccccCCCCccccccccc-cccccccCCc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLF-GIYHDWCESFSTYPRTYDLLHAD-HLFSKIKKRC 722 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~~ce~f~typrtyDl~Ha~-~~~s~~~~rC 722 (796)
.|||+|||.|.|+-.|.+..-=|.. +|.. ..|.++-+||+. .+..+. +.+|..+.+||+|-+. +++....+
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~g---iD~s~~~l~~a~~~~~~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~d-- 118 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGFEVVL---VDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVEN-- 118 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEE---EESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHCSC--
T ss_pred EEEEECCCCchhcccccccceEEEE---eecccccccccccccccccccccc-cccccccccccceeeecchhhhhhh--
Confidence 4899999999999999987543333 3443 678888888853 223333 4455445899998864 45544332
Q ss_pred chHHHHHhhcccccCCcEEEEec
Q 003776 723 NLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
...+|-++-|+|+|||++++..
T Consensus 119 -~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 119 -KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHhhcCcCcEEEEEE
Confidence 4557889999999999999963
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.80 E-value=1.8e-06 Score=85.25 Aligned_cols=92 Identities=22% Similarity=0.413 Sum_probs=61.6
Q ss_pred cccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHhh---cccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYER---GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~eR---Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
=.+|||+|||.|.|+..|.+. .|+.+-.. +..+.++-.| ++-=+..++ +.++ .+.+||+|.+.++|...
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s----~~~i~~a~~~~~~~~~~~~~~~-~~~~-~~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEAS----EEAISHAQGRLKDGITYIHSRF-EDAQ-LPRRYDNIVLTHVLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESC----HHHHHHHHHHSCSCEEEEESCG-GGCC-CSSCEEEEEEESCGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCc----HHHhhhhhcccccccccccccc-cccc-cccccccccccceeEec
Confidence 446999999999999999876 34433221 1344444333 222122333 2333 37899999999998765
Q ss_pred cCCcchHHHHHhh-cccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEV-DRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~-DRiLRP~G~~i~r 744 (796)
. ....+|.++ +|+|+|||+++|.
T Consensus 95 ~---d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 95 D---DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp S---SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred C---CHHHHHHHHHHHhcCCCceEEEE
Confidence 4 345668888 6999999999985
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=2.1e-06 Score=87.58 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=59.7
Q ss_pred ccccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhhcc-cccc-cccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYERGL-FGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+-+.|||+|||.|.|..+|.+. ++-++-| |-. ..|..+-+|+- +... .| .+.+|.-+.+||+|.+.+.+..
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d-~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVAS-SHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECC-TTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeee-hhhccCCCCCEEEEeecCCHHH
Confidence 4567999999999999998765 3444433 333 55666666651 1111 12 2345555689999986544321
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+-||-|||||||++++..
T Consensus 160 ----------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 160 ----------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp ----------HHHHHHHEEEEEEEEEEE
T ss_pred ----------HHHHHHHhCCCcEEEEEe
Confidence 569999999999999963
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=1.5e-06 Score=89.99 Aligned_cols=99 Identities=10% Similarity=0.164 Sum_probs=66.2
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCC--CChhHHHhhcccccccccccccCCCCccccccccccccccccCC
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP--DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR 721 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~--~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r 721 (796)
-.|||+|||.||+|-++.. +++-|.-|...... ---..+.+.||.+-..--+.-|...|-+||-|=+-..|-....+
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~~~~ 143 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFGHE 143 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGTCTT
T ss_pred CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhcCch
Confidence 3499999999999877643 35554444333222 11234567777665554455556667889987777777654432
Q ss_pred cchHHHHHhhcccccCCcEEEEe
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++.|+|+|||.++|.
T Consensus 144 -~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 144 -RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp -THHHHHHHHHHHSCTTCEEEEE
T ss_pred -hHHHHHHHHHhhcCCCCcEEEE
Confidence 2356789999999999999973
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.78 E-value=1.6e-06 Score=84.04 Aligned_cols=96 Identities=25% Similarity=0.342 Sum_probs=65.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccccc--cccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIY--HDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~--~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||+|||.|.++..|.+... +|+-+|-. +.+..+-+| |+.-.+ .|. +.++....+||+|.+..+|..+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~-~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT-TSCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhcccccccccccccc-ccccccCcCceEEEEecchhhC
Confidence 489999999999999987654 33344444 566555443 321111 111 2244445899999999888765
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
. .-.+..+|-++-|+|+|||.++|...
T Consensus 116 ~-~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 116 E-PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp C-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 23566789999999999999998743
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.78 E-value=3.4e-05 Score=80.65 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-----cCCCeEEEEc
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-----RGIPAISAVM 442 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-----rgl~~~~~v~ 442 (796)
.|.+.|.. ++.+. .+..++||.||.|.|..+..+++. +|+++++++..+..++..+..- ....+.+++.
T Consensus 62 ~Yhe~l~h-~~l~~-~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~ 139 (312)
T d1uira_ 62 IYHETLVH-PAMLT-HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139 (312)
T ss_dssp HHHHHHHH-HHHHH-SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHHHHhh-hhhhh-CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc
Confidence 44455443 33222 245789999999999999988764 7999999998888777554332 1234566777
Q ss_pred CC-CCCCCCCCceeEEEEcCCCccccc-------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 443 GT-ERLPFPGIVFDAVHCARCRVPWHI-------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 443 d~-e~LPfpd~SFDlVvss~~~l~w~~-------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|. .-|.-....||+|+.-.. -++.. --..+++.+.|.|+|||.|++..
T Consensus 140 Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 140 DARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CHHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHHHHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 74 222223468999997531 11211 12578999999999999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.77 E-value=2.7e-05 Score=78.23 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
...++|||||||+|.++..|+++ ++++.|+... +..+. ....+.+...+... |.|. .|+++....+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~-~~P~--ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFV-SIPK--ADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTT-CCCC--CSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccc-cCCC--cceEEEEEEe
Confidence 44689999999999999999875 7888888542 21111 12234455555421 3443 3455554432
Q ss_pred ccccc-chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 464 VPWHI-EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 464 l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
..|.. +...+|++++++|+|||.+++....
T Consensus 150 h~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 150 HDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp TTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 33332 4578999999999999999887543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=8.5e-05 Score=76.15 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~LPfpd~SFDlVv 458 (796)
+...+||-||-|.|..++.+++. .|+.+++++..+..++.-+.... ...+.++..|. .-|--..+.||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 35789999999999999999874 78999999988888775543322 23456666665 22223457899999
Q ss_pred EcCC---CcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARC---RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~---~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.-.. ...++.--..+++.+.++|+|||.|+...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 8541 11222234689999999999999999763
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=3.5e-06 Score=82.82 Aligned_cols=120 Identities=14% Similarity=0.277 Sum_probs=76.3
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc--ccccc-ccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL--FGIYH-DWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~-~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++..|+.+... .|+-+|-. ..|..+-+| |. +-.++ |. +.++.-+.+||+|.+.++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccc-cccccccccccccccccc
Confidence 3467999999999999887654322 22222333 455554443 22 11111 22 334544689999999988
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH----------H-----HHHHHHHHHhcCCceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV----------E-----TINELESMVKGMQWEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~----------~-----~~~~~~~~~~~l~W~~~~ 766 (796)
|-.+... .+..+|-++=|+|||||++++.+.. + ....++++++.--+++.-
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 8765432 2456899999999999999985221 1 356677777766676543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.68 E-value=3.5e-06 Score=81.38 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcc---cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||.|.++.+|.++..=|.-| |-. ..|.. +-..|+ -....|.+... ++.+||+|.+..+|-.
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAW---DKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccc---cCcHHHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeeeec
Confidence 49999999999999998875433333 332 33433 334444 33445554433 4689999999998875
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. ..=.+..+|-++-|+|+|||++++.
T Consensus 108 ~-~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 L-EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp S-CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4 3335677899999999999999985
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=5e-06 Score=81.77 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=72.2
Q ss_pred ccccccCccccceeeeccC---CCeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCC-cccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typ-rtyDl~Ha~~~~ 715 (796)
..|||+|||+|.++.+|.. .|-+ +|+=+|-. .-|..+-+| +....++-.+.-+..|| ..+|++.+..+|
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 4699999999998876653 2322 45555655 667766554 67777777777776666 688999987777
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
... +.=....+|-+|-|.|+|||.+|+.|
T Consensus 119 ~~~-~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 119 QFL-PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 543 33356688999999999999999974
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.65 E-value=3e-06 Score=85.10 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=63.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----c----cccccccc-cccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----L----FGIYHDWC-ESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l----ig~~~~~c-e~f~typrtyDl~Ha~~~ 714 (796)
.+|||+|||.|+++..|.+.+.- +|+-+|-. ..|..+-+|- . .-...|.. +++. ...+||+|.+...
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISSQFS 102 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEEESC
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEEEcce
Confidence 46999999999998888776542 23334444 5666666652 1 11122322 2222 2468999987766
Q ss_pred cccccCC-cchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKR-CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~r-C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-..... =.+..+|-+|-|+|+|||+||+.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 5544332 34567899999999999999974
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=2.2e-05 Score=77.81 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=45.0
Q ss_pred CccccccccccccccccC-CcchHHHHHhhcccccCCcEEEEeccH----------------HHHHHHHHHHhcCCceE
Q 003776 703 PRTYDLLHADHLFSKIKK-RCNLVAVVAEVDRILRPEGKLIVRDDV----------------ETINELESMVKGMQWEV 764 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~~-rC~~~~~l~E~DRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~l~W~~ 764 (796)
+.+||+|-+..++...+. +=.+..+|-+|-|+|||||++|+.+-. -..+.|+++++.--+++
T Consensus 150 ~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 150 LPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence 478999998777766542 234567889999999999999996321 13567777787766654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=9.1e-05 Score=76.36 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH----cCCCeEEEEcCC-CCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE----RGIPAISAVMGT-ERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e----rgl~~~~~v~d~-e~LPfpd~SFDlVv 458 (796)
+..++||-||-|.|..+..+++. +|+++++++..+..++.-+... ....+..+..|+ .-|--..+.||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45789999999999999999875 7899999999888887544321 134566677764 22222346899999
Q ss_pred EcCCCccc----ccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPW----HIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w----~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+-.. -+. +..-..+++.+.|.|+|||.|++..
T Consensus 157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 8541 111 1123478999999999999999764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=5.2e-06 Score=84.30 Aligned_cols=95 Identities=13% Similarity=0.262 Sum_probs=60.5
Q ss_pred cccccCccccceeeeccCC------CeEEEEeecCCCC-CChhHHHhh-----ccccccccccc-cc---------CCCC
Q 003776 646 NVMDMRSVYGGFAAAMKDI------SVWVMNVISIDSP-DTLPIIYER-----GLFGIYHDWCE-SF---------STYP 703 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~------~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~~ce-~f---------~typ 703 (796)
+|||+|||.|.|...|+.. ++. ..++-+|.. ..|..+-+| .+-.+-.+|.. .+ +.=+
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~-~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCc-eEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 4999999999997766432 222 233334443 445544443 22222222321 11 1225
Q ss_pred ccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 704 RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+||+|+|.++|-... .+..+|-+|-|+|+|||+++|.
T Consensus 122 ~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 8999999999887654 3678899999999999998874
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=0.00016 Score=74.56 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CCC-CCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERL-PFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~L-Pfpd~SFDlV 457 (796)
+..++||-||-|.|..+..+++. .|+++|+++..+..++.-+.... ...+..++.|. .-+ -...+.||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45789999999999999999875 69999999988887765442211 34466677764 222 2345689999
Q ss_pred EEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 458 HCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 458 vss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.-.. -+... --..+++.+.++|+|||.|++...
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 98542 11111 236889999999999999998743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=7e-06 Score=83.56 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=70.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcccc--cccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGLFG--IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig--~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.++.++....-= |+-+|-. .-+..+- ..|+-. +..++-..++. .+||+|.|+.++..
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~~ 196 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHHH
T ss_pred CEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhcccccc
Confidence 36999999999998887765422 3333332 3444333 334421 12233344442 68999997644432
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~ 767 (796)
+..++=++-|+|+|||++|+++-. +....|.+.++...|+..-.
T Consensus 197 ------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 197 ------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence 456677899999999999997532 23566777777777876544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.59 E-value=5.7e-06 Score=81.87 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=65.1
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhccccc--ccccccccCCCCccccccccc-c
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGLFGI--YHDWCESFSTYPRTYDLLHAD-H 713 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig~--~~~~ce~f~typrtyDl~Ha~-~ 713 (796)
...+.|||+|||.|.++..|..... +|+=+|.. .-|..+- ++|+-.. .+|+ +.++ ++..||+|.+. +
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~-~~~~fD~I~~~~~ 114 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIA-FKNEFDAVTMFFS 114 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCC-CCSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhh-hhcc-cccccchHhhhhh
Confidence 4567899999999999998887754 34444443 4454433 3454222 2233 3344 57899999874 3
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.|... +...+..+|-++-|+|+|||++|+.
T Consensus 115 ~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 115 TIMYF-DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 44443 2345667899999999999999985
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.56 E-value=3.5e-06 Score=85.47 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=67.9
Q ss_pred ccccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChh----HHHhhcccccccccc-cccCCCCcccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLP----IIYERGLFGIYHDWC-ESFSTYPRTYDLL 709 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~~c-e~f~typrtyDl~ 709 (796)
+.|+.+|.|||+|||.|.++++|.++ .+.++. -+..+. .+-+.|+-....-.. .-|...|-.||++
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~D-----lp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v 151 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE-----LAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVV 151 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEE-----CHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEec-----ChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhh
Confidence 56889999999999999999999864 233333 222332 344556533211111 2233446789999
Q ss_pred ccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 710 HADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 710 Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
...++|-.|... ....||-++=|+|||||.|+|-|.
T Consensus 152 ~~~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 152 LLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccccccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence 988888766432 224578899999999999998653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.56 E-value=0.00011 Score=76.82 Aligned_cols=104 Identities=14% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH----cCCCeEEEEcCC-CCCCCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE----RGIPAISAVMGT-ERLPFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e----rgl~~~~~v~d~-e~LPfpd~SFDlVv 458 (796)
+.+++||-||-|.|..++.+++. .|+.+++++..+..++.-+... ....+.+++.|. .-+--..+.||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 35789999999999999999874 6999999998887776332211 123345555654 22222357899999
Q ss_pred EcCCCcccc----cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 459 CARCRVPWH----IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 459 ss~~~l~w~----~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.-.. -+.. .-...+++.+.|+|+|||.|+....
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 8542 1111 1235788999999999999997643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.55 E-value=3.9e-06 Score=84.98 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=63.1
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-.+|||+|||.|.++..|+.+-.- +|.-++.. ..|..+-++ +.+=.++.=-+.|+.-+.+||+|.+..+|-.
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 4567999999999999887643111 12222322 344444332 2222222112334433589999999888866
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+... .+..+|-++-|+|+|||++||.+
T Consensus 171 l~d~-d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 171 LTDA-DFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchh-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 5332 35577999999999999999964
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.53 E-value=1.7e-05 Score=76.54 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=74.8
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcccc-----cccccccccCCCCccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLFG-----IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig-----~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.-.+|||+|||.|.|+.+|.... . +|.-+|-. ..+..+-+ .|+-. +..|+-+.++ +.+||+|-++
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~ 126 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEEEc
Confidence 45679999999999998887542 1 33334433 34444332 23321 2245545443 6899999987
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
..|.... =.+..+|-++-|+|+|||.+++.-. ...-..+...++.+-+++........=+|+-++|
T Consensus 127 ~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K 193 (194)
T d1dusa_ 127 PPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred ccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence 7663221 1245678889999999998876421 1122334444444444444332233334666665
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.50 E-value=0.00012 Score=73.44 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.|.+.+.. .++.+||+||||+|.++..|+++ .|+++++++.++...+..++ ....+.++.+|+..+++
T Consensus 8 ~i~~~iv~~~~~----~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 8 HNIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhcCC----CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhccc
Confidence 345556665542 46889999999999999999875 89999999977655443221 12345777788877777
Q ss_pred CCCceeEEEEcCCCcccccchH
Q 003776 450 PGIVFDAVHCARCRVPWHIEGG 471 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~ 471 (796)
+......|+++ ++++..-+
T Consensus 82 ~~~~~~~vv~N---LPYnIss~ 100 (235)
T d1qama_ 82 PKNQSYKIFGN---IPYNISTD 100 (235)
T ss_dssp CSSCCCEEEEE---CCGGGHHH
T ss_pred cccccceeeee---ehhhhhHH
Confidence 65555567776 56665433
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=8.1e-06 Score=81.01 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=61.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc------ccccccccccccCCCC-ccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG------LFGIYHDWCESFSTYP-RTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG------lig~~~~~ce~f~typ-rtyDl~Ha~~~~s 716 (796)
+.|||+|||.|.++.+|.+.+. -+|+-++-. ..+..+-+|. +..+.+++..-...+| .+||+|-.+.+.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 4699999999999999987653 234444444 4565554443 2334455544333333 5788775333322
Q ss_pred cc--cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KI--KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~--~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. ...-....++-|+=|+|||||.|++-
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 22 22334467899999999999999874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.50 E-value=1e-05 Score=82.72 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=62.4
Q ss_pred cccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----ccc-c-cccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GLF-G-IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli-g-~~~~~ce~f~typrtyDl~Ha 711 (796)
.+-+.|||+|||.|.++..|.+. ..-|.-| |-. ..|..+-++ |+- = +.+|.. .++ ++..||+||+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~-~~~~fD~v~~ 100 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAIC 100 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE---ecchhHhhhhhcccccccccccccccccc-ccc-ccCCceEEEE
Confidence 35567999999999998777653 2223222 322 334433222 321 1 123433 344 4678999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.++|....+ ...+|-+|-|+|||||++++.+
T Consensus 101 ~~~l~~~~d---~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHMTT---PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 998876543 4578999999999999999853
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00026 Score=69.66 Aligned_cols=94 Identities=17% Similarity=0.051 Sum_probs=68.4
Q ss_pred CCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
..+|||||+|.|.-+..|+- .+++.+|....-+...+ ..+.+.++. +.......+.+. ...+||+|+|-. +
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA--~ 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHH-HHHHHcCCcceeeeccchhhhc-cccccceehhhh--h
Confidence 56999999999987776653 38999999886544333 445566775 444445566654 346899998843 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....++.-+...|++||.+++-
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 25778888899999999999975
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.39 E-value=2.6e-05 Score=78.85 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
.++.|.+.+.. .+..+|||||||+|.++..|+++ .|+++++++.++..++..+. ....+.+..+|+..++++
T Consensus 17 ii~kIv~~~~~----~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 17 VLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp THHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccccc
Confidence 34556666543 35789999999999999999875 89999999977644432211 112345666778888888
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHh
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNR 479 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~R 479 (796)
...++.|+++ ++++...+-++.-+..
T Consensus 91 ~~~~~~vv~N---LPY~Ist~il~~~l~~ 116 (245)
T d1yuba_ 91 NKQRYKIVGN---IPYHLSTQIIKKVVFE 116 (245)
T ss_dssp CSSEEEEEEE---CCSSSCHHHHHHHHHH
T ss_pred cceeeeEeee---eehhhhHHHHHHHhhh
Confidence 8888888887 4666655554444443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.37 E-value=2.3e-05 Score=77.74 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=65.7
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc-ccc-ccccccccCCCCccccccccc-ccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL-FGI-YHDWCESFSTYPRTYDLLHAD-HLF 715 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~~ce~f~typrtyDl~Ha~-~~~ 715 (796)
-++|||+|||.|.++..|.++.. .|+=+|.. ..|.++-+| |+ +-+ ..|+.. |+ .+++||+|=+. +.|
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LN-INRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CC-CSCCEEEEEECTTGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhh-hc-ccccccccceeeeee
Confidence 46799999999999999988764 34455655 567666554 43 111 224432 33 26899988643 445
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+.=.+..+|-+|-|.|+|||.||+.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 44444445667899999999999999974
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.0006 Score=71.26 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=70.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCC-CC---CCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTE-RL---PFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e-~L---Pfpd~SFDlVvss 460 (796)
.+..+|||+-||+|.|+..|+++ .|+|+++++..+..|+ +.|...++.. .+...+.+ .+ +.....||+|+..
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 45789999999999999999985 8999999998888877 5666777764 45555543 23 2335679999986
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
...- -...++..+.+. +|.-.+++|
T Consensus 290 PPR~----G~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 290 PARA----GAAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CCTT----CCHHHHHHHHHH-CCSEEEEEE
T ss_pred CCCc----cHHHHHHHHHHc-CCCEEEEEe
Confidence 5211 123566666654 788778777
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.30 E-value=1.9e-05 Score=80.78 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=62.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hccccccc-------ccc---cccCCCCcccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLFGIYH-------DWC---ESFSTYPRTYD 707 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~-------~~c---e~f~typrtyD 707 (796)
..+.|||+|||.|.++..|.+... +|+-+|-. .-|.++-+ +++...++ +|- ..+| +..+||
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd 131 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFD 131 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCce
Confidence 456899999999999999988753 45555554 44544433 33222111 221 1222 246899
Q ss_pred cccccc-cccccc----CCcchHHHHHhhcccccCCcEEEEe
Q 003776 708 LLHADH-LFSKIK----KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 708 l~Ha~~-~~s~~~----~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+|-+.+ .|..+. ..-.+..+|-+|-|+|+|||+|||.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 988543 344322 1223556899999999999999995
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=4.2e-05 Score=79.46 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhhcccc---cccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYERGLFG---IYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
++|||+|||.|.++-.+.... --|.-|-+.... .....+-..|+.. +.+.--+-++..+..||+|-+.-+.....
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~ 114 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence 469999999998765554432 233333332211 2233455556633 33322233444457899998777666666
Q ss_pred CCcchHHHHHhhcccccCCcEEE
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
..-.+..++-+++|+|+|||.+|
T Consensus 115 ~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 115 YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCeEEE
Confidence 66678889999999999999998
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.23 E-value=1.1e-05 Score=80.66 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=73.8
Q ss_pred cccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHhhc-ccccccccccccCCCCccccccccccccccccC
Q 003776 646 NVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYERG-LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.|||+|||.|.++..|.+. .|+.+-+.|.--..-...+-.|+ ++.++++...+.+..+.++|.+-. |.....
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i---~~~~~~ 153 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI---YEDVAQ 153 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE---EECCCS
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe---eccccc
Confidence 4999999999999888753 36666555532211122333444 566777877776655566665443 333334
Q ss_pred CcchHHHHHhhcccccCCcEEEEecc----------HHHHHHHHHHHhcCCceEE
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDD----------VETINELESMVKGMQWEVR 765 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~----------~~~~~~~~~~~~~l~W~~~ 765 (796)
......+|.++.|+|+|||+++|.+. ..+..++.+.++.-..+..
T Consensus 154 ~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 154 PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred hHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 45567789999999999999998521 2345556566554445543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00073 Score=64.78 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC--
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-- 447 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-- 447 (796)
..|.+....+ +++.+||||||++|.|+.++.++ .|+++|+.+.. .-....+...+....
T Consensus 11 ~EI~~k~~l~---k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~ 76 (180)
T d1ej0a_ 11 DEIQQSDKLF---KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHCCC---CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHH
T ss_pred HHHHHHhCcc---CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchh
Confidence 3455554432 46789999999999999998863 68999987621 111234445543221
Q ss_pred ------CCCCCceeEEEEcCCCccccc----ch-------HHHHHHHHhhcCCCcEEEEEeC
Q 003776 448 ------PFPGIVFDAVHCARCRVPWHI----EG-------GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 448 ------Pfpd~SFDlVvss~~~l~w~~----d~-------~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
-+....||+|+|-.+ ..-.- |. ...|.-+.++|||||.|++=..
T Consensus 77 ~~~~~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 77 MKALLERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 123467999999653 21111 11 2455567899999999998743
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.20 E-value=5.9e-05 Score=74.19 Aligned_cols=96 Identities=14% Similarity=0.280 Sum_probs=57.0
Q ss_pred cccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHhhccc-ccccccccccCCCCccccccccccccccccC
Q 003776 646 NVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYERGLF-GIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~eRGli-g~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.|||+|||.|++..+|.+. .|+.+-+.|.--..-...+-.|+.+ -+..+ +...+.|+..+|.+- -+|...-.
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d-~~~~~~~~~~~~~vd--~v~~~~~~ 135 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD-ASKPWKYSGIVEKVD--LIYQDIAQ 135 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC-TTCGGGTTTTCCCEE--EEEECCCS
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEee-ccCccccccccceEE--EEEecccC
Confidence 5999999999988887642 2444433221111111233445533 33333 334445666666543 34443333
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
......+|.|+.|+|+|||+++|-
T Consensus 136 ~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 136 KNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHhccCCeEEEE
Confidence 445567899999999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=3.9e-05 Score=79.35 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=64.4
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhhcc---cccccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.+|||+|||+|.++..+.... --|..+-+.... .....+...|+ |=+.+.-.+-++.-+..||+|-+.-+++...
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~ 116 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLL 116 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecc
Confidence 469999999999877666542 233333332211 22345556664 3334433344554458999998776666555
Q ss_pred CCcchHHHHHhhcccccCCcEEEE
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
..-.+..++-.++|+|+|||.+|.
T Consensus 117 ~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 117 FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cccccHHHHHHHHhcCCCCcEEec
Confidence 555567788889999999999984
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.17 E-value=0.0019 Score=64.67 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CCCCCCC---CCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERLPF---PGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~e~LPf---pd~SFDlVvss 460 (796)
...+|||||+|.|.-+..|+- .+++-+|....-...-+ ..+.+.++.....+. .++.+.. ....||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~-~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE-KLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHH-HHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 467999999999987776653 37999998875443222 344566776544443 3343321 23679999995
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. + ..+..++.-+...|++||.+++-
T Consensus 149 A--v---a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 A--V---ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp C--C---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred h--h---hCHHHHHHHHhhhcccCCEEEEE
Confidence 3 2 26788999999999999999975
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=0.00091 Score=63.90 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCC---CCCCCCCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGT---ERLPFPGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~---e~LPfpd~SFDlVvss 460 (796)
+.+|||+-||||.++...+.+ .|+.+|.+...+...+ +.+...+.. ......+. .........||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik-~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHh-hHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 679999999999999999876 7999999997765555 444444442 23333332 2233445579999997
Q ss_pred CCCcccccc-hHHHHHHHH--hhcCCCcEEEEE
Q 003776 461 RCRVPWHIE-GGKLLLELN--RVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d-~~~~L~Ei~--RVLKPGG~fv~s 490 (796)
.. +..+ ...+|..+. .+|+++|++++.
T Consensus 123 PP---Y~~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 123 PP---FHFNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CC---SSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hh---HhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 63 3332 355666654 479999999986
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.10 E-value=7.1e-05 Score=73.44 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=67.3
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CC----hhHHHhhccccc---ccccc---cccCCCCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DT----LPIIYERGLFGI---YHDWC---ESFSTYPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~----l~~i~eRGlig~---~~~~c---e~f~typrtyDl~Ha 711 (796)
..|||+|||.|.|...|... .. +|+-++-. +. ...+-++||--+ ..|-. ..|+ +.++|.|+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i 105 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYL 105 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhcccc
Confidence 35899999999999988543 33 33334433 33 334556675221 11211 2233 478998874
Q ss_pred ccccccc----cCCcch-HHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHh
Q 003776 712 DHLFSKI----KKRCNL-VAVVAEVDRILRPEGKLIVR-DDVETINELESMVK 758 (796)
Q Consensus 712 ~~~~s~~----~~rC~~-~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~ 758 (796)
....--. ..|..+ ..+|-+|-|+|+|||.|+|+ |...+.+.+..+..
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~ 158 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS 158 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHH
Confidence 3332211 123444 47889999999999999885 77777777766664
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.00 E-value=0.0017 Score=69.82 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----------------CCeEEEeCChhhHHHHHHHHHHHc
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------------RGVLTMSFAPKDEHEAQVQFALER 433 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvDiSp~dl~~A~~q~A~er 433 (796)
...+++|.+.+.. ....+|||..||+|.|...+.+ ..+.|+|+++.....|+..... +
T Consensus 148 ~~Iv~~mv~ll~~----~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~ 222 (425)
T d2okca1 148 RPLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-H 222 (425)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-T
T ss_pred hhhhHhhheeccC----cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-c
Confidence 3456677766543 3578999999999998876643 2589999999887777755544 3
Q ss_pred CCC---eEEEEcCCCCCCCCCCceeEEEEcCCC-ccccc--------------c-hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 434 GIP---AISAVMGTERLPFPGIVFDAVHCARCR-VPWHI--------------E-GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 434 gl~---~~~~v~d~e~LPfpd~SFDlVvss~~~-l~w~~--------------d-~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. ......+... ..+...||+|+++..+ ..+.. + ...++..+.+.|+|||++++..+
T Consensus 223 g~~~~~~~i~~~d~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 223 GIGTDRSPIVCEDSLE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TCCSSCCSEEECCTTT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccceeecCchhh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 332 2233444322 2345689999998642 11110 0 12578889999999999887755
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=8.3e-05 Score=77.48 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=62.1
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhhcccc---cccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYERGLFG---IYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.+|||+|||+|.++..+.... --|.-+-..... .....+..+|+.. +++.-.+.++.-+..||+|-+.-++....
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~ 119 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBS
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeec
Confidence 469999999998876665442 123322221111 2233556667643 23322233443347899998777776655
Q ss_pred CCcchHHHHHhhcccccCCcEEE
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
.--.+..++.+++|+|+|||.+|
T Consensus 120 ~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 120 YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCeEEE
Confidence 55667789999999999999987
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.00 E-value=0.00016 Score=70.85 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=72.5
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC--CChhHHHhhcc--ccc-ccccccccCCC-Cccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP--DTLPIIYERGL--FGI-YHDWCESFSTY-PRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~--~~l~~i~eRGl--ig~-~~~~ce~f~ty-prtyDl~Ha~~~~s 716 (796)
..|||+|||.|.|..+|... +.-++-|=+.... ..+.-+-++|| |-+ .+|...-+..+ +.++|.||... -.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-Pd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-cc
Confidence 35999999999999888543 4444444333221 22334556665 222 23332211223 37899998322 12
Q ss_pred ccc-----CCcch-HHHHHhhcccccCCcEEEE-eccHHHHHHHHHHHhcCCceEE
Q 003776 717 KIK-----KRCNL-VAVVAEVDRILRPEGKLIV-RDDVETINELESMVKGMQWEVR 765 (796)
Q Consensus 717 ~~~-----~rC~~-~~~l~E~DRiLRP~G~~i~-rd~~~~~~~~~~~~~~l~W~~~ 765 (796)
.|. +|-.+ ..+|-++-|+|+|||+++| .|..++...+........|...
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 332 23344 5788899999999999988 5777777777666666566544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.93 E-value=0.0018 Score=65.00 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.+..+|+|||||.|.++.+++.+ .|.|+++-- ++++.-. .....+..+.-......-.-.++...|+|+|-.+
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~-~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~- 141 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPI-PMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIG- 141 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCC-CCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCC-
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCc-cccccccccccchhhhhHHhcCCCcCCEEEeeCC-
Confidence 35679999999999999999865 466666632 1111000 0000111121122111112234678999999752
Q ss_pred ccccc----ch---HHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHI----EG---GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~----d~---~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.... +. ..+|.-+.+.|+|||-|++-+.
T Consensus 142 -ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 142 -ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred -CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 1122 11 2556667799999999997654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.82 E-value=0.00018 Score=71.66 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=74.8
Q ss_pred cccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhc-cccccccccccc--CCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERG-LFGIYHDWCESF--STYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~~ce~f--~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||.|+++.+|.+. .|+.+=+.|.-.......+-.|+ +..+..|-..+. +...-.+|.|+.+-
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~---- 151 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV---- 151 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC----
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEc----
Confidence 5999999999999999753 35655444432222233444555 455555554332 22234566665321
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec----------cHHHHHHHHHHHhcCCceEEEe-e--c-cCCceEEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD----------DVETINELESMVKGMQWEVRMT-Y--S-KDKEGLLCVEKS 781 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd----------~~~~~~~~~~~~~~l~W~~~~~-~--~-~~~e~~l~~~K~ 781 (796)
...=....+|-++.|+|+|||+++|.. ...+...++++.+. .++..-. + . ..+.-++|++|+
T Consensus 152 -~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 152 -AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp -CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEEEEEEECC
T ss_pred -cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceEEEEEEeC
Confidence 111123457999999999999999852 23455666666643 4544321 1 1 123356777774
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.79 E-value=0.0024 Score=66.09 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEc-
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCA- 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss- 460 (796)
.++.+|||+.||.|.=+..|+.. .++++|+++.-+.... +...+.|+.. .....+...++.....||.|+.-
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 46789999999999866666542 5899999987766655 3344456554 33444555666667889999971
Q ss_pred CC----Cccccc------ch----------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 461 RC----RVPWHI------EG----------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 461 ~~----~l~w~~------d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
.| .+.-++ .. ..+|....+.|||||+++.++.....
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 11 111111 11 26778889999999999998776544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.0028 Score=64.74 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC--CCCCCceeEEEEc-
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--PFPGIVFDAVHCA- 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L--Pfpd~SFDlVvss- 460 (796)
.++.+|||+.+|.|.=+..|+.. .|+++|+++.-+...+ +.....|+.+...+.+.... +.....||.|+.-
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 46889999999999877776652 5999999998876665 55666788766555543222 1344689999962
Q ss_pred ---C-CCcccccch----------------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 461 ---R-CRVPWHIEG----------------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 461 ---~-~~l~w~~d~----------------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
. ..+.-+++. ..+|..+.+.|||||+++.++.....
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 1 112111111 26778888999999999999765544
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.00015 Score=73.18 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=35.5
Q ss_pred Ccccccccccccccccc-CCcchHHHHHhhcccccCCcEEEEe
Q 003776 703 PRTYDLLHADHLFSKIK-KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~-~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+..||+|-+..+++..+ ++..+..+|-+|-|+|||||++|+.
T Consensus 155 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 46899999888887665 4567888999999999999999985
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.00024 Score=69.73 Aligned_cols=117 Identities=9% Similarity=-0.001 Sum_probs=70.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-c----------------------cc-ccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-L----------------------FG-IYHDWCESF 699 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-l----------------------ig-~~~~~ce~f 699 (796)
..|||+|||.|-.+.+|.++..=| +=+|.. .-|..+..+- . |- +..|.-.--
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~G~~V---~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADRGHSV---VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEE---EEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CEEEEeCCCCcHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 359999999999999998876533 334443 2333232221 1 00 111222222
Q ss_pred CCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH------------HHHHHHHHHHhcCCceEEE
Q 003776 700 STYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV------------ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 700 ~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~------------~~~~~~~~~~~~l~W~~~~ 766 (796)
+.+..+||+|...++|-... .=....++-+|-|+|||||+++|-... -..++|+.+... .|++..
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred ccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 44557899998777776543 233467899999999999987764110 124557777755 476644
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.0024 Score=61.28 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC-----CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-----PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L-----Pfpd~SFDlVvs 459 (796)
.++..++|..||.|..+..|+++ .|+|+|.++.++..+. .... ...++......+ .+..+.+|.|+.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~-----~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~ 91 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK-----GLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 91 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHh-----hccccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence 46889999999999999999886 8999999997765554 2222 234444433222 133467999998
Q ss_pred cCCCccccc--------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
-+..-.++. .....|.....+|+|||.+++..
T Consensus 92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 764322221 12356788899999999999763
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.38 E-value=0.0001 Score=69.03 Aligned_cols=96 Identities=5% Similarity=-0.045 Sum_probs=57.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhc----cc---c------------cccccccccCCCC-c
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERG----LF---G------------IYHDWCESFSTYP-R 704 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRG----li---g------------~~~~~ce~f~typ-r 704 (796)
.-|||+|||.|-++..|..+..=|.-|-+. ...|..+-+|- +. + +..++ ..++.++ .
T Consensus 22 ~rvLd~GCG~G~~a~~la~~G~~V~gvD~S--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~ 98 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQGYHVVGAELS--EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDIG 98 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEEEEC--HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-SSSTHHHHH
T ss_pred CEEEEecCcCCHHHHHHHHcCCceEeeccc--HHHHHHHHHHhccccchhhhhhhhhccccccceecccc-ccccccccc
Confidence 369999999999999998776433333222 14444444432 10 0 11111 1112122 5
Q ss_pred cccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 705 TYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.||+|.+..+|.... .-....++-+|-|.|+|||++++.
T Consensus 99 ~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 99 HCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp SEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 789988777765432 223456788999999999998874
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0025 Score=70.36 Aligned_cols=117 Identities=16% Similarity=0.012 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----------------------CCeEEEeCChhhHHHHHHH
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----------------------RGVLTMSFAPKDEHEAQVQ 428 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~gvDiSp~dl~~A~~q 428 (796)
...+++|.+.+.. ..+.+|+|-.||+|.|...+.+ ..+.|+|+.+.....++..
T Consensus 150 ~~Iv~~mv~ll~~----~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 150 RPLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred cchhHhhhhcccC----ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 3456667666543 4577999999999998865433 2579999999877666654
Q ss_pred HHHHcCCCeE------EEEcCCCCC-CCCCCceeEEEEcCCCc-ccc-----------cch-HHHHHHHHhhcCCCcEEE
Q 003776 429 FALERGIPAI------SAVMGTERL-PFPGIVFDAVHCARCRV-PWH-----------IEG-GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 429 ~A~ergl~~~------~~v~d~e~L-Pfpd~SFDlVvss~~~l-~w~-----------~d~-~~~L~Ei~RVLKPGG~fv 488 (796)
... ++.... ....+.... ......||+|+++..+- .+. .+. ..+|..+.+.|+|||+++
T Consensus 226 l~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 226 CLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp HHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 433 232211 111111110 12345799999986421 110 011 247888999999999988
Q ss_pred EEeC
Q 003776 489 WSAT 492 (796)
Q Consensus 489 ~s~~ 492 (796)
+..+
T Consensus 305 iIlP 308 (524)
T d2ar0a1 305 VVVP 308 (524)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8755
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.014 Score=59.41 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=62.0
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LP 448 (796)
..++.|.+.+.. .++.+||+||+|+|.++..|+++ .|+++++++.++...+..+.... ...+..+.+|.....
T Consensus 8 ~i~~kIv~~~~~----~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCC----CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 345556555542 35789999999999999999874 89999999977665543332211 123466777775555
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHH
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLL 475 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~ 475 (796)
++ .++.|+++ ++++...+-++.
T Consensus 84 ~~--~~~~vV~N---LPY~Iss~il~~ 105 (278)
T d1zq9a1 84 LP--FFDTCVAN---LPYQISSPFVFK 105 (278)
T ss_dssp CC--CCSEEEEE---CCGGGHHHHHHH
T ss_pred hh--hhhhhhcc---hHHHHHHHHHHH
Confidence 54 35678887 566654343333
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.92 E-value=0.00088 Score=63.71 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=65.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hccc---ccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLF---GIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-.|||+|||+|.++.+|...-- .|+-+|-. .-+..+-+ .||- =+++.-...+.+-...||+|=+.+..
T Consensus 35 ~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~- 110 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG- 110 (186)
T ss_dssp CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT-
T ss_pred CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc-
Confidence 3599999999999998876521 22233443 44444333 3432 12222212222223578877533311
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcCCceEE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGMQWEVR 765 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l~W~~~ 765 (796)
=.+..++-++-|.|||||++++..- .+....+....+...|+..
T Consensus 111 -----~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 111 -----GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp -----TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred -----ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 1357889999999999999998643 3455556666666666543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.78 E-value=0.0093 Score=59.11 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=56.9
Q ss_pred CCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC----CCCCceeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP----FPGIVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP----fpd~SFDlV 457 (796)
+.+||+||++.|..+..++. ..|+++|+.+.....+ ....-.+.+..++..... +....||+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 67999999999976554432 3799999976432111 111233556666643221 334568888
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.-. -|.+.....-+ ++...|+|||++++..
T Consensus 156 fID~--~H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 156 FIDN--AHANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEES--SCSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEcC--CcchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 8754 23332222223 4678999999999864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.72 E-value=0.0011 Score=66.90 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=55.3
Q ss_pred cccccCccccceeeeccCC-----CeEEEEeecCCCC-CChhHHHhh----cc----cccccccccccCCCCcccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSP-DTLPIIYER----GL----FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~~~~ce~f~typrtyDl~Ha 711 (796)
.|||+|||.|+++.+|... .|... +-. ..+..+.++ |. --...|.++.++ ...||+|..
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g~V~~v-----D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~fD~V~l 160 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKGTLTVV-----ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIA 160 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSEEEEE-----CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCcEEEEE-----ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--cceeeeeee
Confidence 5999999999998887642 23333 323 345544442 32 224467777665 478999874
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ +-.. ..+|=++-|+|||||.+++.
T Consensus 161 d-~p~p-------~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 161 D-IPDP-------WNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp C-CSCG-------GGSHHHHHHTEEEEEEEEEE
T ss_pred c-CCch-------HHHHHHHHHhcCCCceEEEE
Confidence 2 2222 24688899999999999985
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=95.55 E-value=0.00072 Score=66.18 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=47.1
Q ss_pred cccccCccccceeeeccC---CC--eEEEEeecCCCCCChhHH---Hhh-cccccccccccccCCC--Cccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKD---IS--VWVMNVISIDSPDTLPII---YER-GLFGIYHDWCESFSTY--PRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~---~~--vwvmnv~p~~~~~~l~~i---~eR-Glig~~~~~ce~f~ty--prtyDl~Ha~~~ 714 (796)
.|||+|||+|.++|.|.. .. |+..-..| ..+..+ +++ |+-.+..-....+..+ ..+||.|++...
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~----~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecch----hhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 799999999999887743 22 44432222 222222 222 3322221122222223 368999997766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+... .. ++=|.|||||.+|+
T Consensus 154 ~~~~------p~---~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 154 VDEV------PE---TWFTQLKEGGRVIV 173 (213)
T ss_dssp BSCC------CH---HHHHHEEEEEEEEE
T ss_pred HHHh------HH---HHHHhcCCCcEEEE
Confidence 5432 12 22367999999997
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0079 Score=60.36 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
.++.|.+.+.. .++..||+||||+|.++..|+++ +|+++++++.++...+..+.. ...+.++.+|+..+++
T Consensus 9 ~~~~Iv~~~~~----~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 9 VIDSIVSAINP----QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHCC----CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCH
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhcc
Confidence 44555555432 35789999999999999999986 899999998765444321111 1234666677655543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.067 Score=54.28 Aligned_cols=107 Identities=10% Similarity=0.027 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeE-EEEcCCCCCCCC---CCceeEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLPFP---GIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v~d~e~LPfp---d~SFDlVv 458 (796)
.++.+|||+.||.|.-+.+|+.. .|+++|+++.-+...+ ..+.+.|+... +...+...++.. ...||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 45789999999999877777642 6999999987766554 55566677643 444454444322 25699999
Q ss_pred EcC-CC----c------ccc--cc---h-------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 459 CAR-CR----V------PWH--IE---G-------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 459 ss~-~~----l------~w~--~d---~-------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
.-. |. + .|. .. . ...|.... .|+|||.++.++.....
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 631 11 1 111 00 0 12333333 47999999988765444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.91 E-value=0.048 Score=49.98 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=60.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-C-------C-CCCCce
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-L-------P-FPGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-L-------P-fpd~SF 454 (796)
+++.+||-+||| .|.++..+++. +|+++|.++. +.++|++.|....+....... . . .....+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH-----HHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 457899999998 55666666553 7899988764 456677777654433221111 0 0 112458
Q ss_pred eEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 455 DlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+|+-.- .....+....++|||||.+++...
T Consensus 100 D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 100 NVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 9888643 234778899999999999997644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.83 E-value=0.0029 Score=63.15 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=63.7
Q ss_pred ccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHhhc----ccccccccccccCCCCccccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYERG----LFGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~eRG----lig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
|..+|.|+|+|||.|.++++|.++ .+.|+-.-. +|-+.+ +--+-||.-+++| ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~--------vi~~~~~~~ri~~~~gd~~~~~p----~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ--------VIENAPPLSGIEHVGGDMFASVP----QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH--------HHTTCCCCTTEEEEECCTTTCCC----CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh--------hhhccCCCCCeEEecCCcccccc----cceEEEEe
Confidence 678999999999999999999744 455554322 222222 3334466545554 35999888
Q ss_pred cccccccC-CcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKK-RCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~-rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++|-.|.. .|. .||-.+=+.|+|||.++|-|
T Consensus 147 ~vLh~~~de~~~--~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSDEKCI--EFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCHHHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCHHHHH--HHHHHHHHHcCCCcEEEEEE
Confidence 88888753 343 47888999999999999864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.0041 Score=62.93 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred cccccCccccceeeeccC---CCeEEEEeecCCCCCChhHH---H-hhcccc----cccccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSPDTLPII---Y-ERGLFG----IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~~~l~~i---~-eRGlig----~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.|||+|||.|+++++|.. ..--|..+-... ..+..+ + ..|+.. ...|.++.|+ ...||.|.
T Consensus 106 ~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~--~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~--~~~~D~V~---- 177 (266)
T d1o54a_ 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALF---- 177 (266)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEE----
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHHHhccccCcEEEecccccccc--ccceeeeE----
Confidence 599999999999888853 222222232221 333332 2 224322 2234344444 36677665
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCce
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWE 763 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~ 763 (796)
.+-.....+|-++-|+|||||.+++- -..+.+.++-..++...|.
T Consensus 178 ----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 178 ----LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp ----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 22234456799999999999999864 3344444444444545564
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.72 E-value=0.023 Score=60.03 Aligned_cols=98 Identities=13% Similarity=-0.032 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchhHHHHhh-C---CeEEEeCChhhHHHHHHHHHHHcCCCe----------------EEEEcCCCCCC-
Q 003776 390 TRVVLDVGCGVASFGGFLFD-R---GVLTMSFAPKDEHEAQVQFALERGIPA----------------ISAVMGTERLP- 448 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~-~---~V~gvDiSp~dl~~A~~q~A~ergl~~----------------~~~v~d~e~LP- 448 (796)
+.+|||..||+|..+...+. . .|++.|+++..+..++ +.++..++.. .....|+..+.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 67999999999999986543 2 7899999998877776 4444343321 12222221111
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
-....||+|..-. .-.+..+|....|.++.||+|.++.+.
T Consensus 125 ~~~~~fDvIDiDP-----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP-----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC-----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC-----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1235699998854 124678999999999999999998764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.23 E-value=0.0086 Score=59.32 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=60.6
Q ss_pred ccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+..+|.|+|+|||.|.++++|.++ .+.|+-.-++-...... + .+-.+-||+.+++|.. ..|-|- +++-
T Consensus 79 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~---~-r~~~~~~d~~~~~P~a-d~~~l~---~vlh 150 (243)
T d1kyza2 79 FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY---P-GVEHVGGDMFVSIPKA-DAVFMK---WICH 150 (243)
T ss_dssp TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC---T-TEEEEECCTTTCCCCC-SCEECS---SSST
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC---C-ceEEecccccccCCCc-ceEEEE---EEee
Confidence 366999999999999999999754 45665543332221111 1 2566778887777642 233332 3444
Q ss_pred ccc-CCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIK-KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~-~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.|. ..| ..||-.+=+.|+|||.++|-
T Consensus 151 ~~~d~~~--~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 151 DWSDEHC--LKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp TSCHHHH--HHHHHHHHHHCCSSSCEEEE
T ss_pred cCCHHHH--HHHHHHHHHhcCCCceEEEE
Confidence 443 223 34789999999999998884
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.07 E-value=0.0033 Score=61.50 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=66.2
Q ss_pred cccccccccccCccccceeeeccC---CCeEEEEeecCCCC--CChhHHHhhcccc----cccccccccCCC-----Ccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSP--DTLPIIYERGLFG----IYHDWCESFSTY-----PRT 705 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~--~~l~~i~eRGlig----~~~~~ce~f~ty-----prt 705 (796)
.-.+-|+||++|||+|..+.+|.. ..-.|..|-..... ..-..+-.-|+-. +..+..+-++.+ ..+
T Consensus 53 ~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 53 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 345689999999999987777653 23333333322111 1112233345421 122333333332 257
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEE
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~ 766 (796)
||+|+-++- +........|++.-|+|||||.+|+-| ..+++..|+. .=+|....
T Consensus 133 ~D~ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 133 LDMVFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEEECSC----GGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred cceeeeccc----ccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 999986642 222233445778889999999877643 3445555543 44666543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=93.94 E-value=0.0027 Score=65.80 Aligned_cols=119 Identities=21% Similarity=0.202 Sum_probs=67.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcccc------cccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGLFG------IYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig------~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
+.|||++||+|+|+.+|...- -.|+-+|.. .-|..+- .-||-. -.-+|...+.....+||+|-++-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 579999999999998886322 245555554 3333222 233311 11123333444446899987553
Q ss_pred -ccccccC-----CcchHHHHHhhcccccCCcEEEEec------cHHHHHHHHHHHhcCCceEEE
Q 003776 714 -LFSKIKK-----RCNLVAVVAEVDRILRPEGKLIVRD------DVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 -~~s~~~~-----rC~~~~~l~E~DRiLRP~G~~i~rd------~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.|+.-.. ...+..|+...=|+|+|||.+++.. ..+..+.|.+-+..-..++++
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEE
Confidence 2221110 1123467888899999999999952 223444555555555545444
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.75 E-value=0.05 Score=50.82 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC------CCCCceeE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP------FPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP------fpd~SFDl 456 (796)
+++.+||-+|||. |.++..+++. .|+++|.++. +.+.+++.|....+...+ ..+. .....||+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh-----hHHHHHhhCccccccccc-hhHHHHHHHHhhccCcce
Confidence 4578899999996 7777777763 7999998763 446666777543221111 1110 12345999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+-.-. ....+.+..++|||+|.+++...
T Consensus 100 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 100 VIMAGG-------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEccC-------CHHHHHHHHHHHhcCCEEEEEee
Confidence 987542 23677888999999999997643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.62 E-value=0.1 Score=49.55 Aligned_cols=96 Identities=18% Similarity=0.081 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC--------CCCce
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF--------PGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf--------pd~SF 454 (796)
+++.+||.+|||. |.++..+++. .|+++|.++. +.++|++.|... ... ...-++ ....+
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~-----rl~~a~~~Ga~~--~~~-~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHAKAQGFEI--ADL-SLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCEE--EET-TSSSCHHHHHHHHHSSSCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch-----hhHhhhhccccE--EEe-CCCcCHHHHHHHHhCCCCc
Confidence 4688999999997 5566665542 7899998764 446677777533 222 111111 23468
Q ss_pred eEEEEcCC-----Cccc---ccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARC-----RVPW---HIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~-----~l~w---~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+++-.-. ..++ .......|..+.+++||||.+++..
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 99985321 0111 1134689999999999999999764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.013 Score=54.26 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
+++.+||-+|+| .|.++..+++. +|+++|.++.-+ +.+++.|....+...+... ..-..+.||+|+....
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-----~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-----EDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-----HHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-----HHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 468899999998 66666666653 789999987543 5566677654332222111 1112357999887432
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... ...+....++|+|+|.+++..
T Consensus 101 -~~~----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 101 -SLT----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CST----TCCTTTGGGGEEEEEEEEECC
T ss_pred -CCc----cchHHHHHHHhhccceEEEec
Confidence 111 112456789999999999753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.16 E-value=0.039 Score=57.94 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--------------------CeEEEeCChhhHHHHHHHHHHHcC-CCeEE--EEcC-CC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--------------------GVLTMSFAPKDEHEAQVQFALERG-IPAIS--AVMG-TE 445 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--------------------~V~gvDiSp~dl~~A~~q~A~erg-l~~~~--~v~d-~e 445 (796)
.-+|.|+||.+|..+..+... +|.--|+-..|.+.-......... .+..+ .+.+ .-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 457999999999766433221 345556655555433211111111 11122 2222 23
Q ss_pred CCCCCCCceeEEEEcCCCcccccc---------------------------------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIE---------------------------------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d---------------------------------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.--||+++.+++||+.+ +||... ...+|+-=.+-|+|||++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 33488999999999986 999531 1135666678899999999873
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.013 Score=59.54 Aligned_cols=131 Identities=13% Similarity=0.247 Sum_probs=80.1
Q ss_pred cccccccCccccceeeeccC-CCeEEEEeecCCCC-CChhH----HHhhcc--c-ccccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP-DTLPI----IYERGL--F-GIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~-~~l~~----i~eRGl--i-g~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.| |||+|||+|..|.+|.. .|=. .|+-+|-. .-|.+ +-.-|+ | =+..||-++++. ..||||=++-=
T Consensus 110 ~~-vlDlGtGSG~I~i~la~~~p~~--~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 184 (274)
T d2b3ta1 110 CR-ILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPP 184 (274)
T ss_dssp CE-EEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCC
T ss_pred cc-eeeeehhhhHHHHHHHhhCCcc--eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecch
Confidence 44 89999999999888853 2211 23334433 23332 111222 2 255677777664 68999876633
Q ss_pred cccc------------cCC---c-------chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCce-EE-Eeecc
Q 003776 715 FSKI------------KKR---C-------NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWE-VR-MTYSK 770 (796)
Q Consensus 715 ~s~~------------~~r---C-------~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~-~~-~~~~~ 770 (796)
+-.. ..+ . -+..|+-+.-+.|+|||++++--..+-...+..+++...|. +. ..|-.
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3211 000 0 02357888999999999999953333356788888777775 33 34666
Q ss_pred CCceEEEEE
Q 003776 771 DKEGLLCVE 779 (796)
Q Consensus 771 ~~e~~l~~~ 779 (796)
+..++++++
T Consensus 265 g~~R~v~~r 273 (274)
T d2b3ta1 265 DNERVTLGR 273 (274)
T ss_dssp SSEEEEEEE
T ss_pred CCceEEEEe
Confidence 778888875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.66 E-value=0.094 Score=48.69 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=58.8
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC--------C-CCCCc
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--------P-FPGIV 453 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L--------P-fpd~S 453 (796)
+++.+||-+||| .|.++..+++. .|+++|.++. +.+.+++.|....+...+ ..+ . .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN-----RLKLAEEIGADLTLNRRE-TSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccc-----cccccccccceEEEeccc-cchHHHHHHHHHhhCCCC
Confidence 457899999998 35666666653 6889998774 345666777543322111 111 0 12345
Q ss_pred eeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||+|+-.-. ....+....++|+|||.+++..
T Consensus 101 ~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 101 ADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 999986432 2356888999999999998764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.60 E-value=0.0088 Score=60.44 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=50.5
Q ss_pred cccccCccccceeeeccCC-----CeEEEEeecCCCC-CChhHHHh---h---cccccc----ccccc-ccCCCCccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSP-DTLPIIYE---R---GLFGIY----HDWCE-SFSTYPRTYDL 708 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~-~~l~~i~e---R---Glig~~----~~~ce-~f~typrtyDl 708 (796)
.|||.|||.|+++.+|... .|+.. +-. ..+..+-+ + +.+.-+ .|-++ +|+ ..+||.
T Consensus 99 ~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~--~~~fDa 171 (264)
T d1i9ga_ 99 RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVDR 171 (264)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEEE
T ss_pred EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc--CCCcce
Confidence 6999999999999988642 25544 222 34444332 1 111211 22222 233 378998
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|.. ++-+. ..+|-++-|+|||||.+++-
T Consensus 172 V~l-dlp~P-------~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 172 AVL-DMLAP-------WEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp EEE-ESSCG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred EEE-ecCCH-------HHHHHHHHhccCCCCEEEEE
Confidence 863 12222 24678899999999999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.039 Score=53.87 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred ccccccccccCccccceeeeccCC---CeEEEEeecCCCC-CC-hhHHHhhcc---cccc-cccccccCCC-----Cccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DT-LPIIYERGL---FGIY-HDWCESFSTY-----PRTY 706 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~-l~~i~eRGl---ig~~-~~~ce~f~ty-----prty 706 (796)
-.+-++||++|+++|--+.+|..- +--|..+-+.... .. -..+-.-|+ |-+. ++-.+.++.+ +.+|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 356899999999999777776532 2233333332222 11 122222332 2111 2333333322 5689
Q ss_pred cccccccccccccCCcchHHHHHhhcccccCCcEEEEeccH---------------HHH-HHHHHHHhcCCceEEEeecc
Q 003776 707 DLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV---------------ETI-NELESMVKGMQWEVRMTYSK 770 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~---------------~~~-~~~~~~~~~l~W~~~~~~~~ 770 (796)
|||..++--+ ....++-.+=|.|||||.+|+-+-. ..+ +-.+.|.+.-+|...+.-
T Consensus 137 D~ifiD~dk~------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP-- 208 (219)
T d2avda1 137 DVAVVDADKE------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP-- 208 (219)
T ss_dssp EEEEECSCST------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC--
T ss_pred cEEEEeCCHH------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee--
Confidence 9999665332 2334445555899999999985321 122 334556688899887652
Q ss_pred CCceEEEEEe
Q 003776 771 DKEGLLCVEK 780 (796)
Q Consensus 771 ~~e~~l~~~K 780 (796)
-.++++|++|
T Consensus 209 igdGl~ia~K 218 (219)
T d2avda1 209 LGDGLTLAFK 218 (219)
T ss_dssp STTCEEEEEE
T ss_pred cCCeeEEEEe
Confidence 2457999998
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.01 E-value=0.15 Score=47.56 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC------CCCCceeE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP------FPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP------fpd~SFDl 456 (796)
+++.+||=+|||. |.++..+++. .|+++|.++. +.++|++.|....+......... ...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 4678999999997 6677766653 6888898874 34667777765433211111110 12356899
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCC-cEEEEEeC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPG-G~fv~s~~ 492 (796)
|+-.- -.+..+.+..+.|+|| |.+++...
T Consensus 102 vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 102 SLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 98643 2457899999999996 99997644
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.12 Score=47.59 Aligned_cols=89 Identities=17% Similarity=0.057 Sum_probs=58.5
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC------CCCCCceeE
Q 003776 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL------PFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGC--GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L------Pfpd~SFDl 456 (796)
+++.+||-+|+ |.|.++..+++. +|++++-++. +.+++++.|....+...+ .++ ......||+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-----~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-----GQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccc-----ccccccccCccccccccc-ccHHHHhhhhhccCCceE
Confidence 46889999997 456666666653 7777776552 345667777654332111 111 123467999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|+... ....+....++|+|+|.++..
T Consensus 101 v~d~~--------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 101 IIEML--------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEESC--------HHHHHHHHHHHEEEEEEEEEC
T ss_pred Eeecc--------cHHHHHHHHhccCCCCEEEEE
Confidence 99853 235788899999999999965
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.35 E-value=0.16 Score=46.97 Aligned_cols=91 Identities=9% Similarity=0.010 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCCc-hhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVA-SFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG-~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlV 457 (796)
+++.+||-+|||.- .++..+++. .|+++|.++ .+.+++++.|....+. .....+ -+.++.||+|
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~-----~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE-----SRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH-----HHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH-----HHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEE
Confidence 46889999999844 344444432 567778766 3456667777643322 221111 1234579999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+-.- -....+....++|||+|.+++..
T Consensus 101 id~~-------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 101 LEST-------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp EECS-------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred EEcC-------CcHHHHHHHHhcccCceEEEEEe
Confidence 8643 23478889999999999998764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=90.53 E-value=0.035 Score=56.06 Aligned_cols=134 Identities=15% Similarity=0.213 Sum_probs=79.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcc---cccc-cccccccCCCCcccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGL---FGIY-HDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGl---ig~~-~~~ce~f~typrtyDl~Ha~~ 713 (796)
..+.|+|+|||.|..+.++...|=+ .|+-+|-. .-+.++- .-|+ +-++ .+|-++++.....||||=++-
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence 3557899999999888777654422 23333433 3333322 2243 3333 356666665445789976552
Q ss_pred cc-------cc---c-------cCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccCCceEE
Q 003776 714 LF-------SK---I-------KKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLL 776 (796)
Q Consensus 714 ~~-------s~---~-------~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l 776 (796)
=. .. + .....+.++--=+-++|+|||++++--..+--+.|+++++...| ..|-.+.++++
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~---~kDl~g~~R~~ 264 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF---LKDSAGKYRFL 264 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEE---EECTTSSEEEE
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCE---EeccCCCcEEE
Confidence 11 10 0 01112222211136899999999996444445677788877665 45667789999
Q ss_pred EEEec
Q 003776 777 CVEKS 781 (796)
Q Consensus 777 ~~~K~ 781 (796)
+++|+
T Consensus 265 ~~~k~ 269 (271)
T d1nv8a_ 265 LLNRR 269 (271)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99985
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.0091 Score=58.62 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=21.7
Q ss_pred ccccccccccccccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 704 RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 704 rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
..||.||........ .-++=|.|+|||.+|+
T Consensus 149 ~~fD~I~~~~~~~~i---------p~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 149 APYDAIHVGAAAPVV---------PQALIDQLKPGGRLIL 179 (224)
T ss_dssp CCEEEEEECSBBSSC---------CHHHHHTEEEEEEEEE
T ss_pred hhhhhhhhhcchhhc---------CHHHHhhcCCCcEEEE
Confidence 579999966654321 1233478999999997
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.016 Score=60.06 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=45.2
Q ss_pred cccccCccccceeeeccCC---C--eEEEEeecCCCCCChhHHHhh--------------c---ccc-cccccccccCCC
Q 003776 646 NVMDMRSVYGGFAAAMKDI---S--VWVMNVISIDSPDTLPIIYER--------------G---LFG-IYHDWCESFSTY 702 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~---~--vwvmnv~p~~~~~~l~~i~eR--------------G---lig-~~~~~ce~f~ty 702 (796)
.|||+|||.|+++.+|... . |+..=+-+ ..+.++.++ + -+- +..|.|.....+
T Consensus 101 rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~----~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 101 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK----DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH----HHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred EEEEecccccHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 4999999999999888642 2 44332211 222222211 1 011 122334332222
Q ss_pred -CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 703 -PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 703 -prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+..||.|..+ +-..| .+|=++-|+|||||.+++-
T Consensus 177 ~~~~fD~V~LD-~p~P~-------~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 177 KSLTFDAVALD-MLNPH-------VTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp ----EEEEEEC-SSSTT-------TTHHHHGGGEEEEEEEEEE
T ss_pred CCCCcceEeec-CcCHH-------HHHHHHHHhccCCCEEEEE
Confidence 2567776521 11122 3577899999999999873
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.30 E-value=0.047 Score=54.62 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhH----HHhhcccccccccccccCCCC--ccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPI----IYERGLFGIYHDWCESFSTYP--RTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~~ce~f~typ--rtyDl~Ha~~~~s 716 (796)
.+||||+||+|+|+..+..+. .-|..| +-. ..+.. +-.-||-+...-.+.-.-.++ ..||.|..+...+
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~~~V~av---d~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~~ 185 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAI---EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR 185 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEE---CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred cEEEECcceEcHHHHHHHHhCCcEEEEe---cCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCCc
Confidence 469999999999987665443 233222 222 22222 222244332222222222222 4688776433221
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc-------HHHHHHHHHHHhcCCceEEE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD-------VETINELESMVKGMQWEVRM 766 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-------~~~~~~~~~~~~~l~W~~~~ 766 (796)
-...|-+.=++|+|||++.+-+. .+..+.+.++++...+++..
T Consensus 186 -------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 186 -------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp -------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred -------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence 12334456689999999876421 12466778888877777654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.16 E-value=0.013 Score=62.57 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.8
Q ss_pred chHHHHHhhcccccCCcEEEEec
Q 003776 723 NLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.+...|-||=|+|||||.+|..+
T Consensus 311 ~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 311 DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHHhcCCCcEEEEec
Confidence 45678999999999999999854
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.00 E-value=0.011 Score=54.25 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=51.2
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHH----Hhhcc---ccccc-ccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPII----YERGL---FGIYH-DWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGl---ig~~~-~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.+|||++||+|+|+...+.+..= +|.-++.. ..+..+ -.-|+ +-+++ |+-..+......||+|.++--|
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 46999999999999644444331 33334443 222221 11233 22233 2222233435789999876443
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
........+ ..+.+ .|+|+|+|.+|+..
T Consensus 94 ~~~~~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AKETIVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp HHHHHHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred ccchHHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 321111112 22333 48999999999853
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.058 Score=55.48 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=18.7
Q ss_pred chHHHHHhhcccccCCcEEEEe
Q 003776 723 NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+...|.||=|+|+|||.+|..
T Consensus 244 ~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 244 EVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHHHHTTCCTTCEEEES
T ss_pred HHHHHHHHHHHhCCCCcEEEEe
Confidence 3457799999999999999974
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.28 Score=44.84 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=60.3
Q ss_pred CCCCEEEEECCCCch-hHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCce
Q 003776 388 KRTRVVLDVGCGVAS-FGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~-~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SF 454 (796)
+++.+||=+|||... ++..+++. +|+++|.++. +.++|++.|......... .... -....|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~-----rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH-----HHHHHHHhCCcccccccc-cccccccccccccCCCCc
Confidence 457899999998654 44444432 6899998764 456777777654333221 1110 012468
Q ss_pred eEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 455 DlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
|+|+-.-. ....+....++|||||.+++...+
T Consensus 99 Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECTG-------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEeccC-------CchhHHHHHHHhcCCCEEEEEecC
Confidence 99987542 346889999999999999986543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.68 E-value=0.18 Score=45.80 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=55.1
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlVv 458 (796)
+++.+||=+|||. |.++..+++. +|+++|.++. +.+++++.|....+...+ ... ....+.++.|+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~-----~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA-----KLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh-----HHHhhhccCccccccccc-hhHHHHHHHhhcCCccccc
Confidence 4578999999874 4455555543 7888988763 446667777543322111 111 01123355555
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. ....+....++|+|||.+++..
T Consensus 100 ~~~--------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAV--------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCS--------CHHHHHHHHTTEEEEEEEEECC
T ss_pred ccc--------cchHHHHHHHHhcCCcEEEEEE
Confidence 443 2467888999999999999754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=89.29 E-value=0.023 Score=55.79 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh--cc--ccc-ccccccccCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER--GL--FGI-YHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Gl--ig~-~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||+|-++|.|...-=- |+-++.. ..+..+-++ +. +-+ ..|-..-++. -..||.|+..+....
T Consensus 73 ~VLdIG~GsGy~ta~La~l~~~---V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~-~~pfD~Iiv~~a~~~-- 146 (224)
T d1vbfa_ 73 KVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE-EKPYDRVVVWATAPT-- 146 (224)
T ss_dssp EEEEECCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG-GCCEEEEEESSBBSS--
T ss_pred eEEEecCCCCHHHHHHHHHhcc---cccccccHHHHHHHHHHHhcccccccccCchhhcchh-hhhHHHHHhhcchhh--
Confidence 5999999999998877543212 2323322 222222221 11 111 1121122221 135999996654432
Q ss_pred CCcchHHHHHhhcccccCCcEEEE
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..-|+ +.|+|||.+|+
T Consensus 147 ----ip~~l~---~qLk~GGrLV~ 163 (224)
T d1vbfa_ 147 ----LLCKPY---EQLKEGGIMIL 163 (224)
T ss_dssp ----CCHHHH---HTEEEEEEEEE
T ss_pred ----hhHHHH---HhcCCCCEEEE
Confidence 222233 56999999987
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.12 Score=47.38 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
+++.+||=+|||. |.++..+++. .+++++..+.. .+++++.|....+...+..........||+|+-.-.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~-----~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK-----REAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG-----HHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhH-----HHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 4688999999873 5566666653 67778876643 345666676543222211111112256999986532
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+....++|+|||.+++..
T Consensus 103 ------~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 103 ------APHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECC
T ss_pred ------cchhHHHHHHHHhcCCEEEEec
Confidence 1235677889999999999763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.49 E-value=0.32 Score=44.18 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCCEEEEECCC--CchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC------CCCCcee
Q 003776 388 KRTRVVLDVGCG--VASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP------FPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCG--tG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP------fpd~SFD 455 (796)
+++.+||=+||+ .|.++..+++ ..|++++.++. +.+++++.|....+ .....+.. .....||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-----~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-----AVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-----HHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh-----hHHHHHHcCCceee-ccCCcCHHHHHHHHhhcccch
Confidence 467899999973 4455555544 27888888763 45666677754322 22211110 1235699
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|+... -....+....++|+|||.+++...+
T Consensus 100 ~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLN-------NSEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESC-------CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhccc-------ccchHHHhhhhhcccCCEEEEeccc
Confidence 998753 2356778889999999999976443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.34 E-value=0.043 Score=56.43 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=55.1
Q ss_pred ccccccCccccceeeeccCCCe-EEEEeecCCCCCChhHH----Hhhccccccc-------ccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPII----YERGLFGIYH-------DWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~i----~eRGlig~~~-------~~ce~f~typrtyDl~Ha~ 712 (796)
.+|||++||+|+|+.++..... -|.+|=... ..|..+ -.-||-...+ +|...++.-.++||+|=.+
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~--~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP--RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeeecccCcccchhhhhhhcCCcEEEeecCCH--HHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 4699999999999987765532 343332221 222222 2223433222 2222233334689998754
Q ss_pred cc-cccccC-----CcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HL-FSKIKK-----RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~-~s~~~~-----rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
-- |+.... ......++...=|+|+|||.+++.
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 221111 112356788888999999999985
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.06 E-value=0.21 Score=47.58 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=62.9
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-cccc-ccccccccCCCCccccccccccccccccCCc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-LFGI-YHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig~-~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
+|||+|||+|+++.++..++-- .|+-++-. ..+.++.+.- ..++ ..-.+.-...++.-||+|=++--|.......
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~~ 126 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHA 126 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTTT
T ss_pred EEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccccc
Confidence 6999999999998665555421 22222332 3444443321 0111 1112333344577899987766665444445
Q ss_pred chHHHHHhhcccccCCcEEE--EeccHHHHHHHHHHHhcCCceEEE
Q 003776 723 NLVAVVAEVDRILRPEGKLI--VRDDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i--~rd~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.+.++. +.+.+++.++ -.........++.+++...|.+..
T Consensus 127 d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 127 DRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp THHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 554432 2334444443 344555666788888888887654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=86.68 E-value=0.077 Score=50.99 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=51.4
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCCcc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~ 723 (796)
++|||+|||+|.++-++...+.- +|+-+|-. ..+..+-+. +.-..-.|.-+...|..||+|=++--|-.......
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N--~~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~D 125 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRN--CGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 125 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHH--CTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHc--cccccEEEEehhhcCCcceEEEeCcccchhhhhch
Confidence 57999999999886444433321 23333332 444444332 12112223334556788999876655543333333
Q ss_pred hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHh
Q 003776 724 LVAVVAEVDRILRPEGKLIVRDDVETINELESMVK 758 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~ 758 (796)
+. + ++..+.+++.++..-......-+++...
T Consensus 126 ~~--f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~ 156 (197)
T d1ne2a_ 126 RA--F--IDKAFETSMWIYSIGNAKARDFLRREFS 156 (197)
T ss_dssp HH--H--HHHHHHHEEEEEEEEEGGGHHHHHHHHH
T ss_pred HH--H--HHHHHhcCCeEEEehhhhHHHHHHHHhh
Confidence 32 2 2445666665544333334444444443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.027 Score=53.40 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=70.6
Q ss_pred ccccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhcccccccccccccCC-CCccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFST-YPRTYDLLHADHLFS 716 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~t-yprtyDl~Ha~~~~s 716 (796)
.-++|+|.||+-|||.-++.++ .|+..-..|...-... .+-.|-|+.....-..... ....+|||=+|+.+.
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~--~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~ 99 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV--DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPN 99 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE--EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc--eEeecccccchhhhhhhhhccCcceeEEEecccch
Confidence 4668999999999998776542 2444444443322111 1112322221111111111 124699999888776
Q ss_pred cccCC--------cchHHHHHhhcccccCCcEEEEe--ccHHHHHHHHHHHhcCCceEEEee-----ccCCceEEEEEe
Q 003776 717 KIKKR--------CNLVAVVAEVDRILRPEGKLIVR--DDVETINELESMVKGMQWEVRMTY-----SKDKEGLLCVEK 780 (796)
Q Consensus 717 ~~~~r--------C~~~~~l~E~DRiLRP~G~~i~r--d~~~~~~~~~~~~~~l~W~~~~~~-----~~~~e~~l~~~K 780 (796)
....+ .++...|.=..++|||||.||+. +..+ ...+..+++.+=-++.+.. ....|.++||+.
T Consensus 100 ~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 100 MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 53322 11223344467899999999985 2222 2223333333322333332 235799999975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=85.46 E-value=0.17 Score=51.74 Aligned_cols=139 Identities=15% Similarity=0.118 Sum_probs=76.0
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHh------hc------ccccccccccccCCCCccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYE------RG------LFGIYHDWCESFSTYPRTYDL 708 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~e------RG------lig~~~~~ce~f~typrtyDl 708 (796)
...|+||.+|+|.|+.+..++.. ++--+-+|=.+. .-+.++-. .| +==+..|+.+-+...++.||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH-HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 46899999999999999888765 342121222221 11221111 11 111234554444455789999
Q ss_pred cccccccccccC---Ccch--HHHHHhhcccccCCcEEEEe------ccHHHHHHHHHHHhcCCceEEEee----c-cCC
Q 003776 709 LHADHLFSKIKK---RCNL--VAVVAEVDRILRPEGKLIVR------DDVETINELESMVKGMQWEVRMTY----S-KDK 772 (796)
Q Consensus 709 ~Ha~~~~s~~~~---rC~~--~~~l~E~DRiLRP~G~~i~r------d~~~~~~~~~~~~~~l~W~~~~~~----~-~~~ 772 (796)
|-.+. +..+.. -..+ ...+-.+-|+|+|||.+++. ...+++..|.+.+++.=..+.... + ...
T Consensus 155 Ii~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~ 233 (312)
T d1uira_ 155 VIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN 233 (312)
T ss_dssp EEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEE
T ss_pred EEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCC
Confidence 98543 222221 1122 35667889999999999974 223456666665544444444321 1 112
Q ss_pred ceEEEEEecc
Q 003776 773 EGLLCVEKSM 782 (796)
Q Consensus 773 e~~l~~~K~~ 782 (796)
-.+++|.|..
T Consensus 234 w~f~~aS~~~ 243 (312)
T d1uira_ 234 FGFLLASDAF 243 (312)
T ss_dssp EEEEEEESSS
T ss_pred CEeEEEeCCC
Confidence 3578888764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.49 E-value=0.89 Score=41.33 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=57.5
Q ss_pred CCCCEEEEECCCCch-hHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-----CCCCceeEE
Q 003776 388 KRTRVVLDVGCGVAS-FGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-----FPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~-~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-----fpd~SFDlV 457 (796)
+++.+||-+|||... ++..+++ ..|+++|.++. +.+++++.|....+ ........ .....+|+|
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~-----k~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE-----KLKLAERLGADHVV-DARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH-----HHHHHHHTTCSEEE-ETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH-----HHHHHhhcccceee-cCcccHHHHHHHhhCCCCceEE
Confidence 357899999998554 4444444 26788888763 44666666654322 22111110 123459999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+-... ....+....++|+|||.+++..
T Consensus 105 id~~g-------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 105 MDFVG-------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EESSC-------CHHHHHHGGGGEEEEEEEEECC
T ss_pred EEecC-------cchHHHHHHHHHhCCCEEEEEe
Confidence 87542 3467899999999999999764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=83.30 E-value=0.095 Score=51.69 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=60.5
Q ss_pred ccccccccccccCccccceeeeccCC----CeEEEEeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|..+++|+|+|||.|.++.+|.++ .+.|+..-++-....+ -+| +--+-||.=++. | .+|++...++
T Consensus 76 ~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~---~~r-v~~~~gD~f~~~---p-~aD~~~l~~v 147 (244)
T d1fp2a2 76 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG---SNN-LTYVGGDMFTSI---P-NADAVLLKYI 147 (244)
T ss_dssp HHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC---BTT-EEEEECCTTTCC---C-CCSEEEEESC
T ss_pred ccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcc---cCc-eEEEecCcccCC---C-CCcEEEEEee
Confidence 35678999999999999999998654 3555553221111110 011 333345543433 3 5799998888
Q ss_pred cccccC-CcchHHHHHhhcccccCC---cEEEEe
Q 003776 715 FSKIKK-RCNLVAVVAEVDRILRPE---GKLIVR 744 (796)
Q Consensus 715 ~s~~~~-rC~~~~~l~E~DRiLRP~---G~~i~r 744 (796)
|-.|.. .|. .||--+=+.|+|| |.++|-
T Consensus 148 LHdw~d~~~~--~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 148 LHNWTDKDCL--RILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp GGGSCHHHHH--HHHHHHHHHHSGGGCCCEEEEE
T ss_pred cccCChHHHH--HHHHHHHHHcCcccCCcEEEEE
Confidence 888763 343 3566777899998 556664
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=83.03 E-value=0.2 Score=51.30 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=60.0
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCC-CChhHHHh-hccc--------ccccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP-DTLPIIYE-RGLF--------GIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~-~~l~~i~e-RGli--------g~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
+.|||+.||+|||+-++.. -.-.|.+|-..... ....--++ .||= +=.-+|...+.--.+.||+|=.+-
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP 225 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 225 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence 5799999999999865543 33355555433222 11111122 2331 111122222222246799987542
Q ss_pred -ccccccCC-c----chHHHHHhhcccccCCcEEEEe------ccHHHHHHHHHHHhcCCceE
Q 003776 714 -LFSKIKKR-C----NLVAVVAEVDRILRPEGKLIVR------DDVETINELESMVKGMQWEV 764 (796)
Q Consensus 714 -~~s~~~~r-C----~~~~~l~E~DRiLRP~G~~i~r------d~~~~~~~~~~~~~~l~W~~ 764 (796)
.|+.-... = ....|+-..=++|+|||++++. +..+....|.+.+..-.+..
T Consensus 226 P~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~ 288 (317)
T d2b78a2 226 PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTY 288 (317)
T ss_dssp CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeE
Confidence 12211110 0 1235666677899999999995 22234444555444434443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.29 E-value=0.11 Score=50.57 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=46.6
Q ss_pred cccccCccccceeeeccC---CCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCC--ccccccccccccccccC
Q 003776 646 NVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYP--RTYDLLHADHLFSKIKK 720 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typ--rtyDl~Ha~~~~s~~~~ 720 (796)
+|||+|||+|-++|-|.. ..|.++-+.|.-....-..+...|+--+..-....+.-+| ..||.||...-...
T Consensus 81 ~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~--- 157 (215)
T d1jg1a_ 81 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPK--- 157 (215)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSS---
T ss_pred eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccccc---
Confidence 799999999999887653 2355443322111001112223343222221222233233 57999995543332
Q ss_pred CcchHHHHHhhcccccCCcEEEE
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..-|++ -|+|||.+|+
T Consensus 158 ---ip~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 158 ---IPEPLIE---QLKIGGKLII 174 (215)
T ss_dssp ---CCHHHHH---TEEEEEEEEE
T ss_pred ---CCHHHHH---hcCCCCEEEE
Confidence 2233554 4899999986
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.14 E-value=1.1 Score=40.58 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC------CCCCceeE
Q 003776 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP------FPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGC--GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP------fpd~SFDl 456 (796)
+++.+||=.|. |.|.++..|++. .++++.-++ .+..++++.|....+... ..++. .....||+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~-----~~~~~l~~~Ga~~vi~~~-~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD-----AKREMLSRLGVEYVGDSR-SVDFADEILELTDGYGVDV 97 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH-----HHHHHHHTTCCSEEEETT-CSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeeccc-----ccccccccccccccccCC-ccCHHHHHHHHhCCCCEEE
Confidence 45789999873 345666666653 666666554 234566666765432211 11210 23456999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|+.... ...+.++.++|+|+|+++..
T Consensus 98 v~d~~g--------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 98 VLNSLA--------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred EEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence 998641 35788889999999999964
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.28 E-value=0.78 Score=41.08 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCCCEEEEECCCCch-hHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC----C-CCCCceeEEE
Q 003776 388 KRTRVVLDVGCGVAS-FGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL----P-FPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~-~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L----P-fpd~SFDlVv 458 (796)
+++.+||=+|||.-. ++..+++ ..|++++.++. +.+++++.|........+ ..+ . ...+.+|+|+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~-----r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE-----KLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH-----HhhhhhhcCcceeccccc-chhhhhcccccCCCceEEe
Confidence 457899999988654 4444443 27888887663 456677777653322111 111 0 1234455554
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. ....+....++|+|||.+++..
T Consensus 100 ~~~--------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 100 TAV--------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSC--------CHHHHHHHHHHEEEEEEEEECC
T ss_pred ecC--------CHHHHHHHHHHhccCCceEecc
Confidence 432 2477899999999999999764
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.27 E-value=0.091 Score=49.56 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=48.0
Q ss_pred ccccccCccccceeeeccCC---C--eEEEEeecCCCCCChhHHHhhcccccccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---S--VWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~--vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
-+|+|.+||.|+|..++.++ . |.-.=+-|.... + -+..--+..++....+ ...||++.++--|....
T Consensus 21 ~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~--~----~~~~~~~~~~~~~~~~--~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD--L----PPWAEGILADFLLWEP--GEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC--C----CTTEEEEESCGGGCCC--SSCEEEEEECCCCCCBS
T ss_pred CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh--h----cccceeeeeehhcccc--ccccceecccCcccccc
Confidence 36899999999998777532 1 222122221111 1 0111112233333222 36799998887664322
Q ss_pred -------------------------CCcchH-HHHHhhcccccCCcEEEE
Q 003776 720 -------------------------KRCNLV-AVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 720 -------------------------~rC~~~-~~l~E~DRiLRP~G~~i~ 743 (796)
....+. .++.-.=+.|+|||++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~ 142 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 142 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence 112222 223446678999999765
|