Citrus Sinensis ID: 003813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790---
Protein Sequence
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHHcccccEEEccccccEEEcccccccccccccccccEEEccccccEEEcccHHHccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccccccccccccEEEccccccEEEEEEEEEEcccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccccccEEEEcccccccccccHHHHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccccccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHccEEEccccccccccccccccEEEEEccccccccccHHHHcccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
miphqlgnlsnlqyldlsgynfklhADTISWLSGLSLLKHLYISSVNlskasdsllvinslpslkelklsfcklhhfpplssanfsslttldlsenefqgqipsrlgnltslkyLDLSFnqfnsvvpgwlsklndleFLSLQSNRlqgnisslglENLTSIQTLLLSgndelggkiptsfgrfcklksfstgftnlsQDISEILGIFSACVAnelesldlgscqifghmtnqlgrfkglnfldlsnttmdgsiplslgqianleyldlsknelngtvseIHFVNLTKLVTFrangnslifkinpnwvppfqltglgvrscrlgprfplwlqsQKKLNDLYISStrisakiprRFWNSIFQYWFLNISgnqmyggvpkfdspsmplvtnlgsifdlsnnalsgsIFHLICQGENFSKNIEFFQLSknhfsgeipdcwmnwprlrmlnlrnnnftgslpmsiGTLSSLMSLNLrnnrlsgiiptsfnnfTILEALDmgenelvgniptwmGERFSRLIILNlrsnkfhgdfpiQLCRLASLQILDVAYnnlsgtiprcinnfsamattdssdqsndIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGidisknnfsgevpvevtnlqglqslnfsynlftgripdnigvMRSIESLDfsanqlsgyipqsmsnlsFLNYLNLsnnnlngeipsstqlqsfggssfadndlcgaplpnctkksvlvtddqnrigneedgdetdWTLYISMALGFVVGFWCFigpllikrrwRYKYCHFLDrlwdgcfvrkcy
Flexible Loop (DISEMBL)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPlpnctkksvlvtddqnrigneedgdetDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLdrlwdgcfvrkCY
Low Complexity Region (SEG)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPrlrmlnlrnnnFTGSLPMSIGTlsslmslnlrnnrlsGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMsnlsflnylnlsnnnlnGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Disordered region (IsUnstruct)
*******NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT*******NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN**********************NDLCGAPLPNCTKKSVLVT*************ETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKC*
Disordered Region (DISOPRED)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT**********FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGA****************************DWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Disordered Region (DISEMBL)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Disordered Region (DISPRO)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	793	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.829	0.525	0.303	2e-65
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.925	0.587	0.304	2e-65
Q9FL28	1173	LRR receptor-like serine/	no	no	0.778	0.526	0.305	5e-65
Q9C9H7	847	Receptor-like protein 12	no	no	0.824	0.772	0.310	1e-64
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.754	0.501	0.299	1e-57
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.822	0.573	0.290	1e-54
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.745	0.536	0.303	7e-52
C0LGV1	1135	LRR receptor-like serine/	no	no	0.752	0.525	0.297	2e-51
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.745	0.543	0.298	9e-51
O49318	1124	Probable leucine-rich rep	no	no	0.736	0.519	0.293	1e-50

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 234/771 (30%), Positives = 345/771 (44%), Gaps = 113/771 (14%)

Query: 24  LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSA 83
           L  D  S L  L  LK L +    L+          +L +L+ L L+ C+L    P    
Sbjct: 132 LSGDIPSQLGSLVNLKSLKLGDNELNGTIPE--TFGNLVNLQMLALASCRLTGLIPSRFG 189

Query: 84  NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143
               L TL L +NE +G IP+ +GN TSL     +FN+ N  +P  L++L +L+ L+L  
Sbjct: 190 RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISE- 202
           N   G I S  L +L SIQ L L GN +L G IP        L++      NL+  I E 
Sbjct: 250 NSFSGEIPS-QLGDLVSIQYLNLIGN-QLQGLIPKRLTELANLQTLDLSSNNLTGVIHEE 307

Query: 203 ----------------ILGIFSACVAN---ELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243
                           + G     + +    L+ L L   Q+ G +  ++   + L  LD
Sbjct: 308 FWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLD 367

Query: 244 LSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303
           LSN T+ G IP SL Q+  L  L L+ N L GT+S     NLT L  F    N+L  K+ 
Sbjct: 368 LSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEGKV- 425

Query: 304 PNWVPPFQLTGLG-------------------VRSC-----------RLGPRFPLWLQSQ 333
                P ++  LG                   + +C           RL    P  +   
Sbjct: 426 -----PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL 480

Query: 334 KKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF 393
           K L  L++    +   IP    N   Q   ++++ NQ+ G +P     S   +T L  +F
Sbjct: 481 KDLTRLHLRENELVGNIPASLGN-CHQMTVIDLADNQLSGSIPS----SFGFLTAL-ELF 534

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEF--------------------FQLSKNHFSGEIP 433
            + NN+L G++   +   +N ++ I F                    F +++N F G+IP
Sbjct: 535 MIYNNSLQGNLPDSLINLKNLTR-INFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIP 593

Query: 434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493
                   L  L L  N FTG +P + G +S L  L++  N LSGIIP        L  +
Sbjct: 594 LELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHI 653

Query: 494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI 553
           D+  N L G IPTW+G +   L  L L SNKF G  P ++  L ++  L +  N+L+G+I
Sbjct: 654 DLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query: 554 PRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDIS 613
           P+ I N  A+   +  +                      + G L      L+ +  + +S
Sbjct: 713 PQEIGNLQALNALNLEENQ--------------------LSGPLPSTIGKLSKLFELRLS 752

Query: 614 KNNFSGEVPVEVTNLQGLQS-LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
           +N  +GE+PVE+  LQ LQS L+ SYN FTGRIP  I  +  +ESLD S NQL G +P  
Sbjct: 753 RNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQ 812

Query: 673 MSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLPNCTK 722
           + ++  L YLNLS NNL G++    Q   +   +F  N  LCG+PL +C +
Sbjct: 813 IGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHCNR 861

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 246/809 (30%), Positives = 370/809 (45%), Gaps = 75/809 (9%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           IP QLG+L N++ L +   + +L  D    L  L  L+ L ++S  L+    S L    L
Sbjct: 135 IPSQLGSLVNIRSLRIG--DNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQL--GRL 190

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             ++ L L    L    P    N S LT    +EN   G IP+ LG L +L+ L+L+ N 
Sbjct: 191 VRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNS 250

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
               +P  L +++ L++LSL +N+LQG I    L +L ++QTL LS N+ L G+IP  F 
Sbjct: 251 LTGEIPSQLGEMSQLQYLSLMANQLQGLIPK-SLADLGNLQTLDLSANN-LTGEIPEEFW 308

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANE-LESLDLGSCQIFGHMTNQLGRFKGLN 240
              +L        +LS  + +     S C  N  LE L L   Q+ G +  +L + + L 
Sbjct: 309 NMSQLLDLVLANNHLSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLK 363

Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300
            LDLSN ++ GSIP +L ++  L  L L  N L GT+S     NLT L       N+L  
Sbjct: 364 QLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLYHNNLEG 422

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
           K+        +L  L +   R     P  + +   L  + +       +IP      + +
Sbjct: 423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI-GRLKE 481

Query: 361 YWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 420
              L++  N++ GG+P        L     +I DL++N LSGSI         F K +E 
Sbjct: 482 LNLLHLRQNELVGGLPASLGNCHQL-----NILDLADNQLSGSIPSSF----GFLKGLEQ 532

Query: 421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGII 480
             L  N   G +PD  ++   L  +NL +N   G++    G+ SS +S ++ NN     I
Sbjct: 533 LMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGS-SSYLSFDVTNNGFEDEI 591

Query: 481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ 540
           P    N   L+ L +G+N+L G IP W   +   L +L++ SN   G  P+QL     L 
Sbjct: 592 PLELGNSQNLDRLRLGKNQLTGKIP-WTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLT 650

Query: 541 ILDVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDIFYASLGDEKIVEDALLVMK----- 594
            +D+  N LSG IP  +   S +     SS+Q    F  SL  E      LLV+      
Sbjct: 651 HIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQ----FVESLPTELFNCTKLLVLSLDGNS 706

Query: 595 --------------------------GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL 628
                                     G L +    L+ +  + +S+N+ +GE+PVE+  L
Sbjct: 707 LNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQL 766

Query: 629 QGLQS-LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687
           Q LQS L+ SYN FTG IP  IG +  +E+LD S NQL+G +P S+ ++  L YLN+S N
Sbjct: 767 QDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFN 826

Query: 688 NLNGEIPSSTQLQSFGGSSFADND-LCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWT 746
           NL G++    Q   +   SF  N  LCG+PL  C +          R  N++ G      
Sbjct: 827 NLGGKL--KKQFSRWPADSFLGNTGLCGSPLSRCNRV---------RSNNKQQGLSARSV 875

Query: 747 LYISMALGF-VVGFWCFIGPLLIKRRWRY 774
           + IS       +G    +  L  K+R  +
Sbjct: 876 VIISAISALTAIGLMILVIALFFKQRHDF 904

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  249 bits (637), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 222/727 (30%), Positives = 329/727 (45%), Gaps = 110/727 (15%)

Query: 83  ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ 142
           AN + L  LDL+ N F G+IP+ +G LT L  L L  N F+  +P  + +L ++ +L L+
Sbjct: 93  ANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLR 152

Query: 143 SNRLQGNISSLGLENLTSIQTLLLSGND--ELGGKIPTSFGRFCKLKSFSTGFTNLSQDI 200
           +N L G++     E +    +L+L G D   L GKIP   G    L+ F     +L+  I
Sbjct: 153 NNLLSGDVP----EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSI 208

Query: 201 SEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQI 260
              +G  +      L  LDL   Q+ G +    G    L  L L+   ++G IP  +G  
Sbjct: 209 PVSIGTLA-----NLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
           ++L  L+L  N+L G +      NL +L   R   N L   I  +     QLT LG+   
Sbjct: 264 SSLVQLELYDNQLTGKIPA-ELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSEN 322

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN----SIFQYWFLNISG-------- 368
            L       +   + L  L + S   + + P+   N    ++    F NISG        
Sbjct: 323 HLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL 382

Query: 369 -----------NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK- 416
                      N + G +P     S+   T L  + DLS+N ++G I         F + 
Sbjct: 383 LTNLRNLSAHDNLLTGPIPS----SISNCTGL-KLLDLSHNQMTGEI------PRGFGRM 431

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL-------------------- 456
           N+ F  + +NHF+GEIPD   N   L  L++ +NN TG+L                    
Sbjct: 432 NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSL 491

Query: 457 ----PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERF 512
               P  IG L  L  L L +N  +G IP   +N T+L+ L M  N+L G IP  M +  
Sbjct: 492 TGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFD-M 550

Query: 513 SRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQ- 571
             L +L+L +NKF G  P    +L SL  L +  N  +G+IP  + + S + T D SD  
Sbjct: 551 KLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610

Query: 572 ----------------------SNDIFYAS----LGDEKIVEDALL---VMKGFLVEYKS 602
                                 SN++   +    LG  ++V++  L   +  G +     
Sbjct: 611 LTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQ 670

Query: 603 ILNLVRGIDISKNNFSGEVPVEVTNLQGLQ---SLNFSYNLFTGRIPDNIGVMRSIESLD 659
               V  +D S+NN SG +P EV   QG+    SLN S N F+G IP + G M  + SLD
Sbjct: 671 ACKNVFTLDFSQNNLSGHIPDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLD 728

Query: 660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGA--P 716
            S+N L+G IP+S++NLS L +L L++NNL G +P S   ++   S    N DLCG+  P
Sbjct: 729 LSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKP 788

Query: 717 LPNCTKK 723
           L  CT K
Sbjct: 789 LKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  248 bits (634), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 224/721 (31%), Positives = 336/721 (46%), Gaps = 67/721 (9%)

Query: 88  LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           L  LDL+     G+IPS LGNL+ L  ++L FN+F   +P  +  LN L  L L +N L 
Sbjct: 112 LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIF 207
           G I S  L NL+ +  L L  N  L GKIP S G   +L++ S    NL  +I   LG  
Sbjct: 172 GEIPS-SLGNLSRLVNLELFSN-RLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNL 229

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIA------ 261
           S  V      L L   Q+ G +   +G    L  +   N ++ G+IP+S   +       
Sbjct: 230 SNLV-----HLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFV 284

Query: 262 ------------------NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303
                             NLEY D+S N  +G   +   + +  L +     N     I 
Sbjct: 285 LSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPK-SLLLIPSLESIYLQENQFTGPIE 343

Query: 304 -PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYW 362
             N     +L  L +   RL    P  +     L +L IS    +  IP    + +    
Sbjct: 344 FANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTI-SKLVNLL 402

Query: 363 FLNISGNQMYGGVPK--FDSPSMPLVTNLGSIF-------------DLSNNALSGSIFHL 407
            L++S N + G VP   +   +M L  N  S F             DL++N+  G I ++
Sbjct: 403 HLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYM 462

Query: 408 ICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP-RLRMLNLRNNNFTGSLPMSIGTLSSL 466
           IC+      ++ F  LS N FSG IP C  N+   ++ LNL +NNF+G+LP      + L
Sbjct: 463 ICK----LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518

Query: 467 MSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFH 526
           +SL++ +N+L G  P S  N   LE +++  N++    P+W+ E    L +LNLRSNKF+
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFY 577

Query: 527 GDFPIQLCRLA--SLQILDVAYNNLSGTIP-RCINNFSAMAT-TDSSDQSNDIFYASLGD 582
           G    +   +   SL+I+D+++NN SGT+P    +N+  M T T+  DQ    F+     
Sbjct: 578 GPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYA-- 635

Query: 583 EKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFT 642
           +    +  +V KG  + ++ I    R ID S N  +G +P  +  L+ L+ LN S N FT
Sbjct: 636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query: 643 GRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702
             IP  +  +  +E+LD S N+LSG IPQ ++ LSFL+Y+N S+N L G +P  TQ Q  
Sbjct: 696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query: 703 GGSSFADNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLY--ISMALGFVVGFW 760
             SSF DN         C     L    Q      ED  E +  ++  ++ A+ +  G  
Sbjct: 756 KCSSFLDNPGLYGLEDICRDTGALNPTSQ----LPEDLSEAEENMFNWVAAAIAYGPGVL 811

Query: 761 C 761
           C
Sbjct: 812 C 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 190/634 (29%), Positives = 299/634 (47%), Gaps = 36/634 (5%)

Query: 79  PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138
           P   ++  +L  L L+ N+F G+IP  + NL  L+ LDLS N    ++P  LS+L  L +
Sbjct: 82  PKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLY 141

Query: 139 LSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
           L L  N   G++      +L ++ +L +S N+ L G+IP   G+   L +   G  + S 
Sbjct: 142 LDLSDNHFSGSLPPSFFISLPALSSLDVS-NNSLSGEIPPEIGKLSNLSNLYMGLNSFSG 200

Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
            I   +G  S      L++    SC   G +  ++ + K L  LDLS   +  SIP S G
Sbjct: 201 QIPSEIGNISL-----LKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFG 255

Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
           ++ NL  L+L   EL G +      N   L +   + NSL   + P  +    L      
Sbjct: 256 ELHNLSILNLVSAELIGLIPP-ELGNCKSLKSLMLSFNSLSGPL-PLELSEIPLLTFSAE 313

Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
             +L    P W+   K L+ L +++ R S +IP    +       L+++ N + G +P+ 
Sbjct: 314 RNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPM-LKHLSLASNLLSGSIPRE 372

Query: 379 DSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMN 438
              S  L        DLS N LSG+I  +     +   ++    L+ N  +G IP+    
Sbjct: 373 LCGSGSL-----EAIDLSGNLLSGTIEEVF----DGCSSLGELLLTNNQINGSIPEDLWK 423

Query: 439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
            P L  L+L +NNFTG +P S+   ++LM      NRL G +P    N   L+ L + +N
Sbjct: 424 LP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDN 482

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP---- 554
           +L G IP  +G + + L +LNL +N F G  P++L    SL  LD+  NNL G IP    
Sbjct: 483 QLTGEIPREIG-KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKIT 541

Query: 555 -----RCI----NNFSAMATTDSSDQSNDIFYASLG---DEKIVEDALLVMKGFLVEYKS 602
                +C+    NN S    +  S   + I    L       I + +   + G + E   
Sbjct: 542 ALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELG 601

Query: 603 ILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSA 662
              ++  I +S N+ SGE+P  ++ L  L  L+ S N  TG IP  +G    ++ L+ + 
Sbjct: 602 ECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLAN 661

Query: 663 NQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
           NQL+G+IP+S   L  L  LNL+ N L+G +P+S
Sbjct: 662 NQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPAS 695

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  214 bits (546), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 211/726 (29%), Positives = 331/726 (45%), Gaps = 74/726 (10%)

Query: 88  LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           L  L L  N F G IP+ L   T L  + L +N  +  +P  +  L  LE  ++  NRL 
Sbjct: 94  LRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLS 153

Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIF 207
           G I  +GL   +S+Q L +S N    G+IP+      +L+  +  +  L+ +I   LG  
Sbjct: 154 GEIP-VGLP--SSLQFLDISSNT-FSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNL 209

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD 267
            +     L+ L L    + G + + +     L  L  S   + G IP + G +  LE L 
Sbjct: 210 QS-----LQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLS 264

Query: 268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV---RSCRLGP 324
           LS N  +GTV    F N T L   +   N+    + P      + TGL V   +  R+  
Sbjct: 265 LSNNNFSGTVPFSLFCN-TSLTIVQLGFNAFSDIVRPETTANCR-TGLQVLDLQENRISG 322

Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
           RFPLWL +   L +L +S    S +IP    N + +   L ++ N + G +P        
Sbjct: 323 RFPLWLTNILSLKNLDVSGNLFSGEIPPDIGN-LKRLEELKLANNSLTGEIPVE------ 375

Query: 385 LVTNLGS--IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRL 442
            +   GS  + D   N+L G I   +     + K ++   L +N FSG +P   +N  +L
Sbjct: 376 -IKQCGSLDVLDFEGNSLKGQIPEFL----GYMKALKVLSLGRNSFSGYVPSSMVNLQQL 430

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
             LNL  NN  GS P+ +  L+SL  L+L  NR SG +P S +N + L  L++  N   G
Sbjct: 431 ERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSG 490

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
            IP  +G  F +L  L+L      G+ P++L  L ++Q++ +  NN SG +P   ++  +
Sbjct: 491 EIPASVGNLF-KLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVS 549

Query: 563 MATTDSSDQS---------------------NDIFYASLGDEKIVEDALLVMK------- 594
           +   + S  S                     ++    S+  E     AL V++       
Sbjct: 550 LRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLM 609

Query: 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654
           G +    S L  ++ +D+ +NN SGE+P E++    L SL+  +N  +G IP +   + +
Sbjct: 610 GHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSN 669

Query: 655 IESLDFSANQLSGYIPQSMSNLSF-LNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DL 712
           +  +D S N L+G IP S++ +S  L Y N+S+NNL GEIP+S   +    S F+ N +L
Sbjct: 670 LTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTEL 729

Query: 713 CGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMAL--GFVVG-FWCFIGPLLIK 769
           CG PL    + S      + R             L I MA    F++  F CF    L+K
Sbjct: 730 CGKPLNRRCESSTAEGKKKKR----------KMILMIVMAAIGAFLLSLFCCFYVYTLLK 779

Query: 770 RRWRYK 775
             WR K
Sbjct: 780 --WRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  206 bits (523), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 201/663 (30%), Positives = 312/663 (47%), Gaps = 72/663 (10%)

Query: 88  LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           L  LDLS N   G+IP  +GN +SL+ L L+ NQF+  +P  + KL  LE L + +NR+ 
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS 158

Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDI-SEILGI 206
           G++  + + NL S+  L+   N+ + G++P S G   +L SF  G   +S  + SEI G 
Sbjct: 159 GSL-PVEIGNLLSLSQLVTYSNN-ISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGC 216

Query: 207 FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFL-------------DLSNTT----- 248
            S      L  L L   Q+ G +  ++G  K L+ +             ++SN T     
Sbjct: 217 ES------LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETL 270

Query: 249 ------MDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKI 302
                 + G IP  LG + +LE+L L +N LNGT+      NL+  +    + N+L  +I
Sbjct: 271 ALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPR-EIGNLSYAIEIDFSENALTGEI 329

Query: 303 NPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYW 362
                    L  L +   +L    P+ L + K L+ L +S   ++  IP  F   +   +
Sbjct: 330 PLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF-QYLRGLF 388

Query: 363 FLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQ 422
            L +  N + G +P    P +   ++L  + D+S+N LSG I   +C       N+    
Sbjct: 389 MLQLFQNSLSGTIP----PKLGWYSDLW-VLDMSDNHLSGRIPSYLC----LHSNMIILN 439

Query: 423 LSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPT 482
           L  N+ SG IP        L  L L  NN  G  P ++    ++ ++ L  NR  G IP 
Sbjct: 440 LGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPR 499

Query: 483 SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL 542
              N + L+ L + +N   G +P  +G   S+L  LN+ SNK  G+ P ++     LQ L
Sbjct: 500 EVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRL 558

Query: 543 DVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601
           D+  NN SGT+P  + +   +     S++  +     +LG+                   
Sbjct: 559 DMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN------------------- 599

Query: 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQ-SLNFSYNLFTGRIPDNIGVMRSIESLDF 660
             L+ +  + +  N F+G +P E+ +L GLQ +LN SYN  TG IP  +  +  +E L  
Sbjct: 600 --LSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLL 657

Query: 661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADND-LCGAPLPN 719
           + N LSG IP S +NLS L   N S N+L G IP    L++   SSF  N+ LCG PL  
Sbjct: 658 NNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQ 714

Query: 720 CTK 722
           C +
Sbjct: 715 CIQ 717

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  204 bits (519), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 199/668 (29%), Positives = 308/668 (46%), Gaps = 71/668 (10%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
           I+S  SL++L +S   L         + S L  +DLS N   G+IPS LG L +L+ L L
Sbjct: 102 ISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCL 161

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP 177
           + N     +P  L     L+ L +  N L  N+  L L  +++++++   GN EL GKIP
Sbjct: 162 NSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLP-LELGKISTLESIRAGGNSELSGKIP 220

Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFK 237
              G    LK      T +S  +   LG  S     +L+SL + S  + G +  +LG   
Sbjct: 221 EEIGNCRNLKVLGLAATKISGSLPVSLGQLS-----KLQSLSVYSTMLSGEIPKELGNCS 275

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
            L  L L +  + G++P  LG++ NLE + L +N L+G + E         + F  + N+
Sbjct: 276 ELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPE--------EIGFMKSLNA 327

Query: 298 LIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
           +   +N                       P    +   L +L +SS  I+  IP    N 
Sbjct: 328 IDLSMN-----------------YFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNC 370

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLI--CQGENFS 415
                F  I  NQ+ G +P    P + L+  L +IF    N L G+I   +  CQ     
Sbjct: 371 TKLVQF-QIDANQISGLIP----PEIGLLKEL-NIFLGWQNKLEGNIPDELAGCQ----- 419

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
            N++   LS+N+ +G +P        L  L L +N  +G +P+ IG  +SL+ L L NNR
Sbjct: 420 -NLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNR 478

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           ++G IP        L  LD+ EN L G +P  +     +L +LNL +N   G  P+ L  
Sbjct: 479 ITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEI-SNCRQLQMLNLSNNTLQGYLPLSLSS 537

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS-NDIFYASLGDEKIVEDALLVMK 594
           L  LQ+LDV+ N+L+G IP  + +  ++     S  S N    +SLG             
Sbjct: 538 LTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLG------------- 584

Query: 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ-SLNFSYNLFTGRIPDNIGVMR 653
                + + L L   +D+S NN SG +P E+ ++Q L  +LN S+N   G IP+ I  + 
Sbjct: 585 -----HCTNLQL---LDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALN 636

Query: 654 SIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSF-ADNDL 712
            +  LD S N LSG +  ++S L  L  LN+S+N  +G +P S   +   G+    +N L
Sbjct: 637 RLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGL 695

Query: 713 CGAPLPNC 720
           C     +C
Sbjct: 696 CSKGFRSC 703

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  202 bits (514), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 195/653 (29%), Positives = 301/653 (46%), Gaps = 62/653 (9%)

Query: 83  ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ 142
               SL TLDLS N F G +PS LGN TSL+YLDLS N F+  VP     L +L FL L 
Sbjct: 97  GELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLD 156

Query: 143 SNRLQGNI-SSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDIS 201
            N L G I +S+G   L  +  L +S N+ L G IP   G   KL+  +     L+  + 
Sbjct: 157 RNNLSGLIPASVG--GLIELVDLRMSYNN-LSGTIPELLGNCSKLEYLALNNNKLNGSLP 213

Query: 202 EILGI-------------------FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFL 242
             L +                   F +    +L SLDL      G +  ++G    L+ L
Sbjct: 214 ASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSL 273

Query: 243 DLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKI 302
            +    + G+IP S+G +  +  +DLS N L+G + +    N + L T + N N L  +I
Sbjct: 274 VMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQ-ELGNCSSLETLKLNDNQLQGEI 332

Query: 303 NPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYW 362
            P      +L  L +   +L    P+ +   + L  + + +  ++ ++P      +    
Sbjct: 333 PPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEV-TQLKHLK 391

Query: 363 FLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQ 422
            L +  N  YG +P     S+ L  +L  + DL  N  +G I   +C G+     +  F 
Sbjct: 392 KLTLFNNGFYGDIPM----SLGLNRSLEEV-DLLGNRFTGEIPPHLCHGQ----KLRLFI 442

Query: 423 LSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPT 482
           L  N   G+IP        L  + L +N  +G LP    +L SL  +NL +N   G IP 
Sbjct: 443 LGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESL-SLSYVNLGSNSFEGSIPR 501

Query: 483 SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL 542
           S  +   L  +D+ +N+L G IP  +G     L +LNL  N   G  P QL   A L   
Sbjct: 502 SLGSCKNLLTIDLSQNKLTGLIPPELGN-LQSLGLLNLSHNYLEGPLPSQLSGCARLLYF 560

Query: 543 DVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKS 602
           DV  N+L+G+IP    ++ +++T   SD                 + L  +  FL E   
Sbjct: 561 DVGSNSLNGSIPSSFRSWKSLSTLVLSDN----------------NFLGAIPQFLAE--- 601

Query: 603 ILNLVRGIDISKNNFSGEVPVEVTNLQGLQ-SLNFSYNLFTGRIPDNIGVMRSIESLDFS 661
            L+ +  + I++N F G++P  V  L+ L+  L+ S N+FTG IP  +G + ++E L+ S
Sbjct: 602 -LDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNIS 660

Query: 662 ANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLC 713
            N+L+G +   + +L  LN +++S N   G IP +    S   S F+ N DLC
Sbjct: 661 NNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIPVNLLSNS---SKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 186/633 (29%), Positives = 306/633 (48%), Gaps = 49/633 (7%)

Query: 88  LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           L  L+L+ N   G IP  +GN + L+ + L+ NQF   +P  ++KL+ L   ++ +N+L 
Sbjct: 111 LVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLS 170

Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIF 207
           G +    + +L +++ L+   N+ L G +P S G   KL +F  G  + S +I   +G  
Sbjct: 171 GPLPE-EIGDLYNLEELVAYTNN-LTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIG-- 226

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD 267
             C+   L+ L L    I G +  ++G    L  + L      G IP  +G + +LE L 
Sbjct: 227 -KCL--NLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLA 283

Query: 268 LSKNELNGTV-SEI-HFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPR 325
           L  N L G + SEI +  +L KL  ++   N  I K         ++  +      L   
Sbjct: 284 LYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPK---ELGKLSKVMEIDFSENLLSGE 340

Query: 326 FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPL 385
            P+ L    +L  LY+   +++  IP    + +     L++S N + G +P       P 
Sbjct: 341 IPVELSKISELRLLYLFQNKLTGIIPNEL-SKLRNLAKLDLSINSLTGPIP-------PG 392

Query: 386 VTNLGSIFDLS--NNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLR 443
             NL S+  L   +N+LSG    +I QG      +     S+N  SG+IP        L 
Sbjct: 393 FQNLTSMRQLQLFHNSLSG----VIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLI 448

Query: 444 MLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGN 503
           +LNL +N   G++P  +    SL+ L +  NRL+G  PT       L A+++ +N   G 
Sbjct: 449 LLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGP 508

Query: 504 IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAM 563
           +P  +G    +L  L+L +N+F  + P ++ +L++L   +V+ N+L+G IP  I N   +
Sbjct: 509 LPPEIGT-CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKML 567

Query: 564 ATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPV 623
              D S  S   F  SL  E      L +++                 +S+N FSG +P 
Sbjct: 568 QRLDLSRNS---FIGSLPPELGSLHQLEILR-----------------LSENRFSGNIPF 607

Query: 624 EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE-SLDFSANQLSGYIPQSMSNLSFLNYL 682
            + NL  L  L    NLF+G IP  +G++ S++ +++ S N  SG IP  + NL  L YL
Sbjct: 608 TIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYL 667

Query: 683 NLSNNNLNGEIPSSTQ-LQSFGGSSFADNDLCG 714
           +L+NN+L+GEIP++ + L S  G +F+ N+L G
Sbjct: 668 SLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTG 700

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	793
315436720	1020	verticillium wilt resistance-like protei	0.981	0.762	0.474	0.0
224072885	1024	predicted protein [Populus trichocarpa]	0.979	0.758	0.455	0.0
356561550	1093	PREDICTED: LRR receptor-like serine/thre	0.976	0.708	0.426	1e-172
255581850	1082	leucine-rich repeat receptor protein kin	0.984	0.721	0.419	1e-170
255539443	1054	serine-threonine protein kinase, plant-t	0.974	0.733	0.420	1e-170
356561552	1019	PREDICTED: LRR receptor-like serine/thre	0.976	0.759	0.425	1e-170
356561665	1072	PREDICTED: LRR receptor-like serine/thre	0.972	0.719	0.406	1e-169
356561606	1051	PREDICTED: leucine-rich repeat receptor	0.977	0.737	0.416	1e-168
356561667	1018	PREDICTED: leucine-rich repeat receptor	0.976	0.760	0.423	1e-168
350284773	1041	receptor-like protein [Malus x domestica	0.973	0.741	0.433	1e-168

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/855 (47%), Positives = 527/855 (61%), Gaps = 77/855 (9%)

Query: 1    MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            ++P QLGNL+NL  LDL  ++  ++A+ + WLS L  LKHL +SSVNLSKASD   V N+
Sbjct: 162  VVPPQLGNLTNLHVLDLHDFSSLVYAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNT 221

Query: 61   LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS-------------------------E 95
            LPSL E+ LS C+LH  P  +  NFSSL+ LDLS                          
Sbjct: 222  LPSLVEIHLSGCQLHRLPLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSH 281

Query: 96   NEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL 155
            N FQGQ+P  L +L+SL+YL+L +N F S +P WL  L  LEFL+L SN   G+IS+ G 
Sbjct: 282  NNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISN-GF 340

Query: 156  ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSA--CVAN 213
            +NLTS+ TL LS N EL G +P S G  C LK       +LS+D+SEIL   S+  C+ N
Sbjct: 341  QNLTSLTTLDLSDN-ELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLN 399

Query: 214  ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
             LESL L SC+IFGH+T+++  FK L  L LS  ++ GSIP SLG +A+L  LDLS+N +
Sbjct: 400  GLESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRV 459

Query: 274  NGT------------------------VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
            NGT                        VSE+HF NLT+L  F+A+GN L+ + +P WVPP
Sbjct: 460  NGTLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPP 519

Query: 310  FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
            FQL  + + S  LGP+FP WL+SQ+    L IS T I    P  FWN    Y+ LN+S N
Sbjct: 520  FQLGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHN 579

Query: 370  QMYGGVPK-------------------FDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQ 410
            Q+YG +P                    FD P +P +++  +  DLS+N  SG I +L+C 
Sbjct: 580  QIYGELPHRIGTSPVADLVYVDLSFNHFDGP-LPCLSSKVNTLDLSSNLFSGPISNLLCC 638

Query: 411  GENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLN 470
                   +E   L+ NH SGEIPDCWMNWP +  ++L NN+ +G +P S+G+L+ L SL+
Sbjct: 639  KMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLH 698

Query: 471  LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
            LR N LSG++P+S  N T L A+D+GEN  VGNIP W+GE+ S  II++L SN+F G  P
Sbjct: 699  LRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIP 758

Query: 531  IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590
              LC L+ L ILD+A+NNLSGTIP+C  N SAMA   +S  SN I YA       +E  L
Sbjct: 759  DNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMAANQNS--SNPISYAFGHFGTSLETLL 816

Query: 591  LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG 650
            L++KG L+EY S L LV  +D+S NN +GE+P  +T+L GL+ LN S N   GRIP NIG
Sbjct: 817  LMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIG 876

Query: 651  VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN 710
             +R +ES+D S NQL G IP SMS L+FL+YLNLS NNL G+IPSSTQLQSF  SS+  N
Sbjct: 877  NLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDGN 936

Query: 711  DLCGAPLPN-CTKKSVLVTDDQNRIGNEEDGDETDWT-LYISMALGFVVGFWCFIGPLLI 768
             LCG PL   C+  +   +D  N   NE DG E DW   Y SMA GFVVGFW  +GPLL 
Sbjct: 937  HLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVVMGPLLF 996

Query: 769  KRRWRYKYCHFLDRL 783
             + WR++Y   L+RL
Sbjct: 997  NKSWRFRYFRILERL 1011

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/867 (45%), Positives = 535/867 (61%), Gaps = 90/867 (10%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
            IPH LGNLS+L YL+L  Y  + + + ++WLS LS L+ L +S V+L    + L VIN+L
Sbjct: 168  IPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLEFLDLSLVHLGNVFNWLEVINTL 227

Query: 62   PSLKELKLSFCKLHHFPPLSSANF---------------SSLTTLDLSE----------- 95
            PSL EL LS+C+L   PP+   NF               S+++ L+              
Sbjct: 228  PSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISMLNFPRWVSHLKTLLSL 287

Query: 96   ----NEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS 151
                N FQG IP+ L NLT LK LDLS N F+S +P WL     L+ L+L SN LQG +S
Sbjct: 288  NLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLLNLGSNNLQGVLS 347

Query: 152  SLGLENLTSIQTLLLSGNDELG--GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSA 209
            S  + N+TS+ +L LS N EL   G IP SF + C L++ S     L+QDI+E+L +   
Sbjct: 348  S-AIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLNQDIAEVLEVLLG 406

Query: 210  CVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269
            CV+ E+ESLDL  C +FG +TN LG+F+ L +L L + ++ G IP++LG++ +L  L LS
Sbjct: 407  CVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALGELVSLRSLVLS 466

Query: 270  KNELNGT------------------------VSEIHFVNLTKLVTFRANGNSLIFKINPN 305
             N+LNGT                        VSE+HF NL  L  F A GN L  +++P+
Sbjct: 467  DNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSAAGNQLNLRVSPD 526

Query: 306  WVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN 365
            W+PP QL  + +RS  +GP+FP W++  + L+ L IS++ IS+ IP  FW   F+  +LN
Sbjct: 527  WIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWFWTMSFRMEYLN 585

Query: 366  ISGNQMYGGVP---KFD-SPSMPLV---------------TNLGSIFDLSNNALSGSIFH 406
            +S NQ+ G +P   K D + S PLV               +N+G++ DLSNN+ SGS+ +
Sbjct: 586  LSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGAL-DLSNNSFSGSMLN 644

Query: 407  LICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSL 466
             +C   +  KN++   L +N  SG IPDCW +W  L  + L NN  +G++P SIG LS L
Sbjct: 645  FLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLL 704

Query: 467  MSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFH 526
             SL++RN+ LSG +P S  N T L  LD+ ENELVG++P W+G+RFS +++LN+R+NKFH
Sbjct: 705  ESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFH 764

Query: 527  GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIV 586
            G  P +LC LASLQILD+A+N LS +IP C N  SAMAT +  D    I+  S       
Sbjct: 765  GRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRN--DSLGKIYLDS--GSSTF 820

Query: 587  EDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP 646
            ++ LLVMKG +VEY +IL  VR ID+S N   GE+P EVT L  LQSLN S N  TGRIP
Sbjct: 821  DNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRIP 880

Query: 647  DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSS 706
            + IG +R +ES+DFS NQLSG IPQSMS+L+FL++LNLS+N L G IPS TQLQSFG SS
Sbjct: 881  EGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSS 940

Query: 707  FADNDLCGAPL-PNCTKKSVLVTDDQNRIGNEEDGD--ETDWTLYISMALGFVVGFWCFI 763
            F+ N+LCG PL  NC+  +    + +     EEDG+  +  W  Y+SM LGF+VGFW  +
Sbjct: 941  FSGNELCGPPLSKNCSVDNKFHVEHE----REEDGNGLKGRW-FYVSMVLGFIVGFWGVV 995

Query: 764  GPLLIKRRWRYKYCHFLDRLWDGCFVR 790
            GPL+  RRWRY Y HFLDRL D  + R
Sbjct: 996  GPLMFNRRWRYVYYHFLDRLRDQIWWR 1022

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561550|ref|XP_003549044.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/856 (42%), Positives = 495/856 (57%), Gaps = 82/856 (9%)

Query: 2    IPHQLGNLSNLQYLDLSGY-NFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            IP Q+GNLSNL YLDL  Y +  L A+ + W+S +  L++LY+S+ NLSKA   L  + S
Sbjct: 234  IPSQIGNLSNLLYLDLGNYFSEPLFAENVEWVSSMWKLEYLYLSNANLSKAFHWLHTLQS 293

Query: 61   LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSE------------------------- 95
            LPSL  L LS CKL H+   S  NFSSL TL LS                          
Sbjct: 294  LPSLTHLYLSHCKLPHYNEPSLLNFSSLQTLHLSYTSYSPAISFVPKWIFKLKKLASLQL 353

Query: 96   --NEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
              NE  G IP  + NLT L+ LDLSFN F+S +P  L  L+ L+FL+L  N L G IS  
Sbjct: 354  SGNEINGPIPGGIRNLTLLQNLDLSFNSFSSSIPDCLYGLHRLKFLNLMGNNLHGTISD- 412

Query: 154  GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN 213
             L NLTS+  L LS N +L G IPTS G  C L+     +  L+Q ++E+L I + C+++
Sbjct: 413  ALGNLTSLVELDLSHN-QLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISH 471

Query: 214  ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
             L  L + S ++ G++T+ +G FK ++ L  SN ++ G++P S G++++L YLDLS N+ 
Sbjct: 472  GLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFSNNSIGGALPRSFGKLSSLRYLDLSMNKF 531

Query: 274  ------------------------NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
                                    +G V E    NLT L    A+GN+    + PNW+P 
Sbjct: 532  SGNPFESLRSLSKLFSLHIDGNLFHGVVKEDDLANLTSLKEIHASGNNFTLTVGPNWIPN 591

Query: 310  FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
            FQLT L V S +LGP FPLW+QSQ +L  + +S+T I   IP + W ++ Q W+LN+S N
Sbjct: 592  FQLTHLEVTSWQLGPSFPLWIQSQNQLEYVGLSNTGIFDSIPTQMWEALSQVWYLNLSRN 651

Query: 370  QMYG----------GVPKFDSPSMPLVTNLGSI------FDLSNNALSGSIFHLICQGEN 413
             ++G           +P  D  S  L   L  +       DLS+N+ S S+   +C  ++
Sbjct: 652  HIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVFQLDLSSNSFSESMNDFLCNDQD 711

Query: 414  FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRN 473
                +EF  L+ N+ SGEIPDCWMNW  L  +NL++N+F G+LP S+G+L+ L SL +RN
Sbjct: 712  EPMGLEFLNLASNNLSGEIPDCWMNWTLLVDVNLQSNHFVGNLPQSMGSLAELQSLQIRN 771

Query: 474  NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533
            N LSGI PTS      L +LD+GEN L G IPTW+GE    + IL LRSN F G  P ++
Sbjct: 772  NTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGENLLNVKILRLRSNSFAGHIPSEI 831

Query: 534  CRLASLQILDVAYNNLSGTIPRCINNFSAMA----TTDSSDQSNDIFYASLGDEKIVEDA 589
            C+++ LQ+LD+A NNLSG I  C +N SAM     +TD    S           + +  A
Sbjct: 832  CQMSHLQVLDLAQNNLSGNIRSCFSNLSAMTLMNQSTDPRIYSQAQSSRPYSSMQSIVSA 891

Query: 590  LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649
            LL +KG   EY++ L LV  ID+S N   GE+P E+T L GL  LN S+N   G IP  I
Sbjct: 892  LLWLKGRGDEYRNFLGLVTSIDLSSNKLLGEIPREITYLNGLNFLNLSHNQLIGHIPQGI 951

Query: 650  GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFAD 709
            G MR ++S+DFS NQLSG IP S++NLSFL+ L+LS N+L G IP+ TQLQ+F  SSF  
Sbjct: 952  GNMRLLQSIDFSRNQLSGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDASSFIG 1011

Query: 710  NDLCGAPLP-NCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLI 768
            N+LCG PLP NC+      ++ +       DG   +W  ++SM +GF+VGFW  I PLLI
Sbjct: 1012 NNLCGPPLPINCS------SNGKTHSYEGSDGHGVNW-FFVSMTIGFIVGFWIVIAPLLI 1064

Query: 769  KRRWRYKYCHFLDRLW 784
             R WRY Y HFLD +W
Sbjct: 1065 CRSWRYAYFHFLDHVW 1080

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  607 bits (1564), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 382/910 (41%), Positives = 517/910 (56%), Gaps = 129/910 (14%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFK----LHADTISWLSGLSLLKHLYISSVNLSKASDSLLV 57
            IPHQLGNLSNLQYL+L+  +      ++ +++ WLS L  L+ L  S V+LSKA + L V
Sbjct: 168  IPHQLGNLSNLQYLNLNAKSIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDV 227

Query: 58   INSLPSLKELKLSFCKLHHFPPLSSANFSSL----------------------TTLDLSE 95
            +N+LPSL EL LS  +L+  P LS+ NFSSL                       TLDLS 
Sbjct: 228  LNTLPSLGELHLSGSELYPIPLLSNVNFSSLLTLNLSANNFVVPSWIFRLTTLATLDLSS 287

Query: 96   NEF-------------------------------------------------QGQIPSRL 106
            N F                                                  G+IPS +
Sbjct: 288  NNFVGSIPIHLQNITTLRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTI 347

Query: 107  GNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL 166
            GNLTSL+ LDLSFN     +P  +  L  L+ L L  N L+G+I S  + NL S+ +L L
Sbjct: 348  GNLTSLRSLDLSFNSLEEGIPSAIGNLTSLKSLDLSRNSLEGDIPS-AIGNLASLSSLDL 406

Query: 167  SGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF 226
            S N   GG IPT F   C L+S       LSQ+I+E+  I S CV++ LESL L S Q+ 
Sbjct: 407  SRNSLEGG-IPTWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLS 465

Query: 227  GHMTNQLGRFKGLNFLDLS------------------------NTTMDGSIPLSLGQIAN 262
            GH++++L +FK L +LDL+                        N  ++GS+P+  G ++ 
Sbjct: 466  GHLSDRLVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSK 525

Query: 263  LEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ-LTGLGVRSCR 321
            L Y+D+S N L G +SEIHF NLT L TF+A+ N L  +++P+W P FQ ++ + ++  +
Sbjct: 526  LNYVDISNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWK 585

Query: 322  LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF--- 378
            +GP+FP W+ S K L  L +S++ IS+ +P  F N   + + +N+S NQM+G +P     
Sbjct: 586  VGPQFPTWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSID 645

Query: 379  DSP-------------SMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK 425
            DS              SMP +++     DLSNN+ SGSI   +C      + I    L +
Sbjct: 646  DSDYSLIDLSSNNFGGSMPFISSNPFGLDLSNNSFSGSISSFLCYKP---RTINVLNLGE 702

Query: 426  NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFN 485
            N FSGEIPDCWMNW    ++ L NN F+G++P SIGTLS L  LN+RNN LSG +P S  
Sbjct: 703  NLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLK 762

Query: 486  NFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVA 545
            + T L+ LD+  NEL G I TWMG+ F   +ILNLR NKFHG  P +LC + +L ILD A
Sbjct: 763  HCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFA 822

Query: 546  YNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILN 605
             NNL+GTIPRCINNF+A+ +  S  +   +           E +L+   G LVEY + L 
Sbjct: 823  NNNLNGTIPRCINNFTALLSGTSYLKDGKVLVDYGPTLTYSESSLIERNGKLVEYSTTLG 882

Query: 606  LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665
             VR +D S N  SGE+P E+T+L+GL  LN S+N  TGRIP+NIG M++++ LDFS NQL
Sbjct: 883  FVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQL 942

Query: 666  SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSV 725
            SG IPQSMS+L+FLN LNLS+N L+G IPSSTQLQSF  SSF+ N+LCG PL        
Sbjct: 943  SGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPPLTQSCSGDG 1002

Query: 726  LVTDDQNRIGNEEDG-----DETDW-TLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHF 779
               D + R    EDG     +  DW   Y+S+A GFV+GFW  +GPL   +RWR  Y +F
Sbjct: 1003 EKPDIEKR--TTEDGGNGSPEAIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRWRRLYFNF 1060

Query: 780  LDRLWDGCFV 789
            L+ LW+  +V
Sbjct: 1061 LEDLWNKIWV 1070

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 371/883 (42%), Positives = 491/883 (55%), Gaps = 110/883 (12%)

Query: 1    MIPHQLGNLSNLQYLDLSGY-----NFKLHADTISWLSGLSLLKHLYISSVNLSKASDSL 55
            +IP+QLGNLS+L+ L + G        KL+ D +SWLS L  L+HL +S V L  ASD L
Sbjct: 143  LIPYQLGNLSSLRELGVQGACVYLGKAKLYVDDLSWLSRLPSLQHLDLSCVKLRAASDWL 202

Query: 56   LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
            LV+N+LPSL EL LS C L   PPLS  NF++L+ L++S+N+F   IP+ +  LT+L  L
Sbjct: 203  LVMNALPSLSELHLSKCNLVVIPPLSDVNFTALSVLEISQNQFGSSIPNWIFTLTNLTSL 262

Query: 116  DLSFNQFN-------------------------------------------------SVV 126
            D+SF  F+                                                 S +
Sbjct: 263  DMSFCYFDGPIPNDLSHLTSLLSLDLSVNNLYGPIPTGFQNLTGLRNLNLYGVNLTSSRI 322

Query: 127  PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKL 186
            P WL     LE L L    +QG ISS  ++NL ++  L L+   +L G +P + G  C L
Sbjct: 323  PEWLYDFRQLESLDLSQTNVQGEISST-IQNLIALVNLKLAFT-KLEGTLPQTIGNLCNL 380

Query: 187  KSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSN 246
            +        L  D+S++   F+ C++  LE  +LG+    GH+ N +G+   L  LDLS+
Sbjct: 381  QIIRLSGNKLGGDVSKVFESFAGCISQSLE--ELGN-NFSGHIGNAIGQLGTLQHLDLSD 437

Query: 247  TTMDGSIPLSLGQIA------------------------NLEYLDLSKNELNGTVSEIHF 282
              + GSIP S+G+++                        NL+ +D+S N L G VSE+HF
Sbjct: 438  NFISGSIPESIGRLSSLIWAFLPNNQLTGTLPVTFRNLSNLQTIDISHNLLEGVVSEVHF 497

Query: 283  VNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYIS 342
             NLT L  F A+ N L+ K++P WVPPF+L  LG+R   LGP+FP+WLQSQ     L +S
Sbjct: 498  TNLTSLTAFVASHNHLVLKVSPAWVPPFRLKELGLRYWNLGPQFPIWLQSQDYFTYLDLS 557

Query: 343  STRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP-----------------KFDSPSMPL 385
             T IS  IP  FWN      +LN+S NQ+ G +P                 +F  P +P 
Sbjct: 558  CTEISDSIPTWFWNLTSHIKYLNLSHNQIPGQLPSSLSIISMLPTIYLGFNQFKGP-LPR 616

Query: 386  VTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRML 445
                 S  DLSNN  SGSI   +C       ++    L +N  SGEIPDCWMNW  L ++
Sbjct: 617  FEADISALDLSNNFFSGSITRFLCYPTVVPYSLRILHLGENQLSGEIPDCWMNWKSLTVI 676

Query: 446  NLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
             L NNN TG +P SIG L +L SL LR N LSG IP S  N T L  LD+  N+ VG +P
Sbjct: 677  KLGNNNLTGKIPSSIGVLWNLRSLQLRKNSLSGEIPMSLGNCTRLLTLDLAANDFVGKVP 736

Query: 506  TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565
             W+G  F  L+ L+LRSN+  G+ P ++CRL+SLQILD A NNLSGT+P+CI N ++M T
Sbjct: 737  DWLGGSFPELLALSLRSNQLTGEIPSEICRLSSLQILDFAGNNLSGTVPKCIANLTSMTT 796

Query: 566  TDSSDQSNDIFYASLGDEKIV----EDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
                 +   IFY+S G   +V    E+A +V KG  VEY SIL LV+ +D+S N  SGE+
Sbjct: 797  VQPRTK---IFYSSTGYYSLVEIFLENAYVVTKGKEVEYDSILTLVKSMDLSSNKISGEI 853

Query: 622  PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681
            P E+T L GL SLN S N  TG+IP+NIG M  +ESLD S NQ+SG IP SM+   FLNY
Sbjct: 854  PAELTALLGLMSLNLSGNDLTGQIPNNIGDMPVLESLDLSRNQISGNIPPSMAKSHFLNY 913

Query: 682  LNLSNNNLNGEIPSSTQLQSFGGSSFADND-LCGAPLPNCTKKSVLVTDDQNRIGNEEDG 740
            LNLS N+L+GEIPSSTQLQS   SSF  N+ LCG PL      +    D     GNE +G
Sbjct: 914  LNLSYNDLSGEIPSSTQLQSQDASSFVGNNRLCGPPLAISCTVAETPQDTGKGSGNEGEG 973

Query: 741  DETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRL 783
             + D   Y+ + +G VVGFW   G LL  R WR+ Y  FLD++
Sbjct: 974  IKID-EFYLGLTIGSVVGFWGVFGSLLYNRSWRHAYFQFLDKV 1015

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561552|ref|XP_003549045.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/856 (42%), Positives = 496/856 (57%), Gaps = 82/856 (9%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            IP Q+GNLSNL YLDLS ++ + L A+ + W+S +  L++L +S  NLSKA   L  + S
Sbjct: 160  IPPQIGNLSNLVYLDLSYFDLEPLLAENVEWVSSMWKLEYLDLSYANLSKAFHWLHTLQS 219

Query: 61   LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS-------------------------- 94
            LPSL  L LS CKL H+   S  NFSSL TL LS                          
Sbjct: 220  LPSLTHLYLSGCKLPHYNEPSLLNFSSLQTLHLSRTSYSPAISFVPKWIFKLKKLVSLQL 279

Query: 95   -ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
             +N FQG IP  + NLT L+ LDLSFN F+S +P  L  L+ L+FL+L  N L G IS  
Sbjct: 280  LDNGFQGPIPGGIRNLTLLQNLDLSFNSFSSSIPDCLYGLHRLKFLNLMGNNLHGTISD- 338

Query: 154  GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN 213
             L NLTS+  L LS N +L G IPTS G  C L+     +  L+Q ++E+L I + C+++
Sbjct: 339  ALGNLTSLVELDLSHN-QLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISH 397

Query: 214  ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
             L  L + S ++ G++T+ +G FK ++ L  SN ++ G++P S G++++L YLDLS N+ 
Sbjct: 398  GLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFSNNSIGGALPRSFGKLSSLRYLDLSMNKF 457

Query: 274  ------------------------NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
                                    +G V E    NLT L    A+GN+    + PNW+P 
Sbjct: 458  SGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTEIHASGNNFTLTVGPNWIPN 517

Query: 310  FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
            FQL  L V S +LGP FPLW+QSQ +L  + +S+T I   IP + W ++ Q  +LN+S N
Sbjct: 518  FQLNYLEVTSWQLGPSFPLWIQSQNQLEYVGLSNTGIFDSIPTQMWEALSQVLYLNLSRN 577

Query: 370  QMYG----------GVPKFDSPSMPLVTNLGSI------FDLSNNALSGSIFHLICQGEN 413
             ++G           +P  D  S  L   L  +       DLS+N+ S S+   +C  ++
Sbjct: 578  HIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVFQLDLSSNSFSESMNDFLCNDQD 637

Query: 414  FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRN 473
                +EF  L+ N+ SGEIPDCWMNW  L  +NL++N+F G+LP S+G+L+ L SL +RN
Sbjct: 638  EPMRLEFLNLASNNLSGEIPDCWMNWTLLADVNLQSNHFVGNLPQSMGSLAELQSLQIRN 697

Query: 474  NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533
            N LSGI PTS      L +LD+GEN L G IPTW+GE    + IL LRSN F G  P ++
Sbjct: 698  NTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGENLLNVKILRLRSNSFAGHIPNEI 757

Query: 534  CRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLG----DEKIVEDA 589
            C+++ LQ+LD+A NNLSG IP C +N SAM   + S        A  G      + +   
Sbjct: 758  CQMSHLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQSTDPRIYSQAQGGRYYSSRQSIVSV 817

Query: 590  LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649
            LL +KG   EY++IL LV  ID+S N   GE+P E+T L GL  LN S+N   G IP  I
Sbjct: 818  LLWLKGRGDEYRNILGLVTSIDLSSNKLLGEIPREITYLNGLNFLNMSHNQLIGHIPQGI 877

Query: 650  GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFAD 709
            G MRS++S+DFS NQL G IP S++NLSFL+ L+LS N+L G IP+ TQLQ+F  SSF  
Sbjct: 878  GNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLQTFNASSFIG 937

Query: 710  NDLCGAPLP-NCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLI 768
            N+LCG PLP NC+      ++ +       DG   +W  ++SM +GF+VGFW  I PLLI
Sbjct: 938  NNLCGPPLPINCS------SNGKTHSYEGSDGHGVNW-FFVSMTIGFIVGFWIVIAPLLI 990

Query: 769  KRRWRYKYCHFLDRLW 784
             R WRY Y HFLD +W
Sbjct: 991  CRSWRYAYFHFLDHVW 1006

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561665|ref|XP_003549100.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 367/903 (40%), Positives = 502/903 (55%), Gaps = 132/903 (14%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
            IP Q+GNLSNL YLDLS Y    HA+ + W+S +  L++L +SS NLSKA   L  + SL
Sbjct: 169  IPPQIGNLSNLVYLDLSNY----HAENVEWVSSMWKLEYLDLSSANLSKAFHWLHTLQSL 224

Query: 62   PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN------------------------- 96
            PSL  L LS CKL H+   S  NFSSL TLDLS+                          
Sbjct: 225  PSLTHLYLSGCKLPHYNEPSLLNFSSLQTLDLSDTSYSPAISFVPKWIFKLKKLVSLQLS 284

Query: 97   ---EFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS- 152
               E QG IP  + NLT L+ LDLSFN F+S +P  L  L+ L+FL+L+ N L G IS  
Sbjct: 285  DNYEIQGPIPCGIRNLTHLQNLDLSFNSFSSSIPNCLYGLHRLKFLNLRYNNLHGTISDA 344

Query: 153  ----------------------------------------------LGLENLTSIQTLLL 166
                                                          + L NLTS+  L L
Sbjct: 345  LGNLTSLVELDLSVNQLEGTIPTSFGNLTSLVELDLSLNQLEGTIPISLGNLTSLVELDL 404

Query: 167  SGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF 226
            S N +L G IPTS G  C L+     +  L+Q ++E+L I + C+++ L  L + S ++ 
Sbjct: 405  SAN-QLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISHGLTRLAVQSSRLS 463

Query: 227  GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL------------- 273
            G++T+ +G FK +  L   N ++ G++P S G++++L YLDLS N+              
Sbjct: 464  GNLTDHIGAFKNIEQLRFYNNSIGGALPRSFGKLSSLRYLDLSINKFSGNPFESLRSLSK 523

Query: 274  -----------NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRL 322
                       +G V E    NLT L  F A+GN+   K+ PNW+P FQLT L V S +L
Sbjct: 524  LLSLHIDGNLFHGVVKEDDLANLTSLTGFVASGNNFTLKVGPNWIPNFQLTYLEVTSWQL 583

Query: 323  GPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGV-PKFDSP 381
            GP FPLW+QSQ KL  + +S+T I   IP + W ++ Q  +LN+S N ++G +     +P
Sbjct: 584  GPSFPLWIQSQNKLKYVGLSNTGIFDSIPTQMWEALSQVLYLNLSRNHIHGEIGTTLKNP 643

Query: 382  ---------------SMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKN 426
                            +P +++     DLS+N+ S S+   +C  ++    +EF  L+ N
Sbjct: 644  ISIRTIDLSSNHLCGKLPYLSSDVHQLDLSSNSFSESMNDFLCNDQDKPILLEFLNLASN 703

Query: 427  HFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNN 486
            + SGEIPDCWMNW  L  +NL++N+F G+LP S+G+L+ L SL +RNN LSGI PTS   
Sbjct: 704  NLSGEIPDCWMNWTFLADVNLQSNHFVGNLPQSMGSLADLQSLQIRNNTLSGIFPTSLKK 763

Query: 487  FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAY 546
               L +LD+GEN L G IPTW+GE    + IL LRSN+F G  P ++C+++ LQ+LD+A 
Sbjct: 764  NNQLISLDLGENNLSGTIPTWVGENLLNVKILRLRSNRFGGHIPNEICQMSLLQVLDLAQ 823

Query: 547  NNLSGTIPRCINNFSAMA----TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKS 602
            NNLSG IP C +N SAM     +TD    S   +  S    + +   LL +KG   EY++
Sbjct: 824  NNLSGNIPSCFSNLSAMTLKNQSTDPRIYSQGKYIVSYSATESIVSVLLWLKGRGDEYRN 883

Query: 603  ILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSA 662
            IL LV  ID+S N   GE+P E+T L GL  LN S+N   G IP  IG MRS++S+DFS 
Sbjct: 884  ILGLVTSIDLSSNKLFGEIPREITYLNGLNFLNMSHNQLIGHIPQGIGNMRSLQSIDFSR 943

Query: 663  NQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAPLP-NCT 721
            NQL G IP S++NLSFL+ L+LS N+L G IP+ TQLQ+F  SSF  N+LCG PLP NC+
Sbjct: 944  NQLFGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCS 1003

Query: 722  KKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLD 781
                  ++ +       DG   +W  ++SM +GF+VGFW  I PLLI R WRY Y HFLD
Sbjct: 1004 ------SNGKTHSYEGSDGHGVNW-FFVSMTVGFIVGFWIVIAPLLICRSWRYAYFHFLD 1056

Query: 782  RLW 784
             +W
Sbjct: 1057 HVW 1059

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561606|ref|XP_003549072.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  600 bits (1547), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 366/879 (41%), Positives = 499/879 (56%), Gaps = 104/879 (11%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            IP Q+GNLS L+YLDLS  + + L A+ + WLS +  L++L++S  NLSKA   L  + S
Sbjct: 168  IPPQIGNLSKLRYLDLSDSDVEPLFAENVEWLSSMWKLEYLHLSYANLSKAFHWLHTLQS 227

Query: 61   LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSE------------------------- 95
            LPSL  L LSFC L H+   S  NFSSL TL LS+                         
Sbjct: 228  LPSLTHLYLSFCTLPHYNEPSLLNFSSLQTLHLSDTSYSPAISFVPKWIFKLKKLVSLQL 287

Query: 96   --NEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
              NE    IP  + NLT L+ LDLSFN F+S +P  L  L+ L+ L L S  L G IS  
Sbjct: 288  SYNEINDPIPGGIRNLTLLQNLDLSFNSFSSSIPDCLYGLHRLKSLDLSSCDLHGTISD- 346

Query: 154  GLENLTSIQTLLLSGND-----------------------ELGGKIPTSFGRFCKLKSFS 190
             L NLTS+  L LSGN                        +L G IPTS G  C L+   
Sbjct: 347  ALGNLTSLVELDLSGNQLEGNIPTSLGNLTSLVELYLSYSQLEGNIPTSLGNLCNLRVID 406

Query: 191  TGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMD 250
              +  L+Q ++E+L I + C+++ L +L + S ++ G++T+ +G FK +  LD SN  + 
Sbjct: 407  LSYLKLNQQVNELLEILAPCISHGLTTLAVQSSRLSGNLTDHIGAFKNIVQLDFSNNLIG 466

Query: 251  GSIPLSLGQIANLEYLDLSKNEL------------------------NGTVSEIHFVNLT 286
            GS+P S G++++L YLDLS N+                         +G V E    NLT
Sbjct: 467  GSLPRSFGKLSSLRYLDLSMNKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLT 526

Query: 287  KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRI 346
             L  F A+GN+   K+ PNW+P FQLT L V S +LGP FPLW+QSQ +L  + +S+T I
Sbjct: 527  SLTEFVASGNNFTLKVGPNWIPNFQLTYLEVTSWQLGPSFPLWIQSQNQLQYVGLSNTGI 586

Query: 347  SAKIPRRFWNSIFQYWFLNISGNQMYG----------GVPKFDSPS------MPLVTNLG 390
               IP + W ++ Q  +LN+S N ++G           +P  D  S      +P +++  
Sbjct: 587  FDSIPTQMWEALSQVRYLNLSRNHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDV 646

Query: 391  SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN 450
               DLS+N+ S S+   +C  ++    +EF  L+ N+ SGEIPDCWMNW  L  +NL++N
Sbjct: 647  FWLDLSSNSFSESMNDFLCNDQDEPMGLEFLNLASNNLSGEIPDCWMNWTFLADVNLQSN 706

Query: 451  NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
            +F G+LP S+G+L+ L SL +RNN LSGI P+S      L +LD+GEN L G+IPTW+GE
Sbjct: 707  HFVGNLPQSMGSLADLQSLQIRNNTLSGIFPSSLKKNNQLISLDLGENNLSGSIPTWVGE 766

Query: 511  RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA----TT 566
                + IL LRSN F G  P ++C+++ LQ+LD+A NNLSG IP C +N SAM     +T
Sbjct: 767  NLLNVKILRLRSNSFAGHIPNEICQMSLLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQST 826

Query: 567  DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT 626
            D    S      S    + +   LL +K    EY++IL LV  ID+S N   GE+P E+T
Sbjct: 827  DPRIYSQGKHGTSYSSMESIVSVLLWLKRRGDEYRNILGLVTSIDLSSNKLLGEIPREIT 886

Query: 627  NLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686
             L GL  LN S+N   G IP  IG MRS++S+DFS NQL G IP S++NLSFL+ L+LS 
Sbjct: 887  YLNGLNFLNMSHNQLIGHIPQGIGNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSY 946

Query: 687  NNLNGEIPSSTQLQSFGGSSFADNDLCGAPLP-NCTKKSVLVTDDQNRIGNEEDGDETDW 745
            N+L G IP+ TQLQ+F  SSF  N+LCG PLP NC+      ++ Q       DG   +W
Sbjct: 947  NHLKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCS------SNGQTHSYEGSDGHGVNW 1000

Query: 746  TLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLW 784
              ++SM +GF+VGFW  I PLLI R WRY Y HFLD +W
Sbjct: 1001 -FFVSMTIGFIVGFWIVIAPLLICRSWRYAYFHFLDHVW 1038

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561667|ref|XP_003549101.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  600 bits (1546), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/857 (42%), Positives = 497/857 (57%), Gaps = 83/857 (9%)

Query: 2    IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            IP Q+GNLSNL YLDL GY+ + + A+ + W+S +  L++L++S  NLSKA   L  + S
Sbjct: 158  IPSQIGNLSNLVYLDLGGYSVEPMLAENVEWVSSMWKLEYLHLSYANLSKAFHWLHTLQS 217

Query: 61   LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS-------------------------- 94
            LPSL  L LS C L H+   S  NFSSL TL LS                          
Sbjct: 218  LPSLTHLDLSGCTLPHYNEPSLLNFSSLQTLHLSFTSYSPAISFVPKWIFKLKKLVSLQL 277

Query: 95   -ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
              NE QG IP  + NLT L+ L LS N F+S +P  L  L+ L+FL+L  N L G IS  
Sbjct: 278  WGNEIQGPIPGGIRNLTLLQNLYLSGNSFSSSIPDCLYGLHRLKFLNLGDNHLHGTISD- 336

Query: 154  GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN 213
             L NLTS+  L LSGN +L G IPTS G  C L+        L+Q ++E+L I + C+++
Sbjct: 337  ALGNLTSLVELDLSGN-QLEGNIPTSLGNLCNLRDIDFSNLKLNQQVNELLEILAPCISH 395

Query: 214  ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
             L  L + S ++ GH+T+ +G FK +  LD SN ++ G++P S G+ ++L YLDLS N+ 
Sbjct: 396  GLTRLAVQSSRLSGHLTDYIGAFKNIERLDFSNNSIGGALPRSFGKHSSLRYLDLSTNKF 455

Query: 274  NG------------------------TVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
            +G                         V E    NLT L+   A+GN+   K+ PNW+P 
Sbjct: 456  SGNPFESLGSLSKLSSLYIGGNLFQTVVKEDDLANLTSLMEIHASGNNFTLKVGPNWLPN 515

Query: 310  FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
            FQL  L VRS +LGP FP W++SQ KL  L +S+  I   IP + W ++ Q  +LN+S N
Sbjct: 516  FQLFHLDVRSWQLGPSFPSWIKSQNKLEYLDMSNAGIIDSIPTQMWEALPQVLYLNLSHN 575

Query: 370  QMYG----------GVPKFDSPS------MPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
             ++G           +P  D  S      +P +++  S  DLS+N+ S S+   +C  ++
Sbjct: 576  HIHGESGTTLKNPISIPVIDLSSNHLCGKLPYLSSDVSQLDLSSNSFSESMNDFLCNDQD 635

Query: 414  FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRN 473
                ++F  L+ N+ SGEIPDCWMNW  L  +NL++N+F G+LP S+G+L+ L SL +RN
Sbjct: 636  EPMQLQFLNLASNNLSGEIPDCWMNWTFLGNVNLQSNHFVGNLPQSMGSLAELQSLQIRN 695

Query: 474  NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533
            N  SGI P+S      L +LD+GEN L G IPTW+GE+  ++ IL LRSN F G  P ++
Sbjct: 696  NTFSGIFPSSLKKNNQLISLDLGENNLSGCIPTWVGEKLLKVKILRLRSNSFAGHIPNEI 755

Query: 534  CRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS---NDIFYA--SLGDEKIVED 588
            C+++ LQ+LD+A NNLSG IP C  N SAM   + S      ++  YA  S      +  
Sbjct: 756  CQMSHLQVLDLAENNLSGNIPSCFCNLSAMTLKNQSTYPRIYSEEQYAGSSYSFNYGIVS 815

Query: 589  ALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDN 648
             LL +KG   EYK+ L LV  ID+S N   G++P E+T L GL  LN S+N   G IP  
Sbjct: 816  VLLWLKGRGDEYKNFLGLVTDIDLSSNKLLGKIPREITYLNGLNFLNLSHNQLIGHIPQG 875

Query: 649  IGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFA 708
            IG MRSI+++DFS NQLSG IP ++SNLSFL+ L+LS N+L G IP+ TQLQ+F  SSF 
Sbjct: 876  IGNMRSIQTIDFSRNQLSGEIPPTISNLSFLSMLDLSYNHLKGNIPTGTQLQTFDASSFI 935

Query: 709  DNDLCGAPLP-NCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLL 767
             N+LCG PLP NC+      ++ +       DG   +W  ++S  +GFVVGFW  I PLL
Sbjct: 936  GNNLCGPPLPINCS------SNGKTHSYEGSDGHGVNW-FFVSATIGFVVGFWIVIAPLL 988

Query: 768  IKRRWRYKYCHFLDRLW 784
            I R WRY Y HFLD +W
Sbjct: 989  ICRSWRYAYFHFLDHVW 1005

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284773|gb|AEQ27758.1| receptor-like protein [Malus x domestica]

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 381/879 (43%), Positives = 496/879 (56%), Gaps = 107/879 (12%)

Query: 1    MIPHQLGNLSNLQYLDLSGYNFKLH--ADTISWLSGLSLLKHLYISSVNLSKASDSLLVI 58
            +IPH+LGNLS+L+YL+LS   F  H   + + W+S LSLLKHL +SSVNLSKASD L V 
Sbjct: 162  IIPHKLGNLSSLRYLNLSSGFFGPHLKVENLQWISSLSLLKHLDLSSVNLSKASDWLQVT 221

Query: 59   NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN---------------------- 96
            N LPSL EL +S C+L+  PPL + NF+SL  LDLS N                      
Sbjct: 222  NMLPSLVELIMSDCELYQIPPLPTPNFTSLVVLDLSVNFFNSLMPRWVFSLKNLVSLRLS 281

Query: 97   --EFQGQIPSRLGNLTSLKYL--------------------------------------- 115
               FQG IPS   N+TSL+ +                                       
Sbjct: 282  ACWFQGPIPSISQNITSLREIDLSGNYLSLDPIPKWLFNQKDLALSLEFNNHTGQLPSSI 341

Query: 116  ---------DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL 166
                     DLSFN FNS +P WL  L +LE L L S+ L G ISS  + N+TS+  L L
Sbjct: 342  QNMTGLIALDLSFNDFNSTIPEWLYSLTNLESLLLSSSVLHGEISS-SIGNMTSLVNLHL 400

Query: 167  SGNDELGGKIPTSFGRFCKLKSFSTGFTN-LSQDISEILGIFSACVANELESLDLGSCQI 225
             GN +L GKIP S G  CKLK       + + +  SEI    S C  + ++SL L    I
Sbjct: 401  DGN-QLEGKIPNSLGHLCKLKVLDLSENHFMVRRPSEIFESLSRCGPDGIKSLSLRYTNI 459

Query: 226  FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNL 285
             GH+   LG    L  LD+S    +G+    +GQ+  L  LD+S N L G VSE+ F NL
Sbjct: 460  SGHIPMSLGNLSSLEKLDISLNQFNGTFTEVIGQLKMLTDLDISYNSLEGVVSEVSFSNL 519

Query: 286  TKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTR 345
            TKL  F A GNS   K + +WVPPFQL  L + S  LGP +P+WL++Q +L +L +S T 
Sbjct: 520  TKLKHFIAKGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLKELSLSGTG 579

Query: 346  ISAKIPRRFWNSIFQYWFLNISGNQMYGGVP----KFDSP----------SMPLVTNLGS 391
            IS+ IP  FWN  FQ  +LN+S NQ+YG +      +DS           ++P+V     
Sbjct: 580  ISSTIPTWFWNLTFQLDYLNLSHNQLYGQIQNIFGAYDSTVDLSSNQFTGALPIVPTSLD 639

Query: 392  IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
              DLSN++ SGS+FH  C   +  + + F  L  N  +G++PDCWM+W  LR LNL NN+
Sbjct: 640  WLDLSNSSFSGSVFHFFCDRPDEPRKLHFLLLGNNSLTGKVPDCWMSWQSLRFLNLENNH 699

Query: 452  FTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511
             TG++PMS+G L  L SL+LRNN L G +P S  N T L  LD+  N   G+IP W+G+ 
Sbjct: 700  LTGNVPMSMGYLVWLGSLHLRNNHLYGELPHSLQN-TSLSVLDLSGNGFSGSIPIWIGKS 758

Query: 512  FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQ 571
             S L +L LRSNKF GD P ++C L SLQILD+A+N LSG IPRC +N SA+A  D S  
Sbjct: 759  LSELHVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALA--DFSQI 816

Query: 572  SNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGL 631
             +   +  + ++ + E+A+LV KG  +EY  IL  V+G+D+S N   GE+P E+T L  L
Sbjct: 817  FSTTSFWGVEEDGLTENAILVTKGIEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLAL 876

Query: 632  QSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691
            QSLN S N FTG IP  IG M  +ESLDFS NQL G IP SM+ L+FL++LNLS NNL G
Sbjct: 877  QSLNLSNNRFTGGIPSKIGSMAQLESLDFSMNQLDGEIPPSMTKLTFLSHLNLSYNNLTG 936

Query: 692  EIPSSTQLQSFGGSSFADNDLCGAPL-PNCTKKSVLVTDDQNRIGNEEDGD------ETD 744
             IP STQLQS   SSF  N+LCGAPL  NC+   V+          E+DG       E +
Sbjct: 937  RIPESTQLQSLDQSSFVGNELCGAPLNKNCSTNGVIPPPTV-----EQDGGGGYRLLEDE 991

Query: 745  WTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRL 783
            W  Y+S+ +GF  GFW  +G LL+   W       L+R+
Sbjct: 992  W-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI 1029

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	793
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.941	0.792	0.306	2e-72
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.906	0.821	0.304	9.9e-71
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.933	0.773	0.301	2.7e-68
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.871	0.796	0.293	2e-63
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.852	0.833	0.307	1.1e-62
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.926	0.824	0.288	1.4e-62
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.918	0.740	0.288	5e-62
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.930	0.825	0.286	1.8e-60
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.924	0.877	0.287	4e-58
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.808	0.756	0.293	1.4e-57

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 248/809 (30%), Positives = 373/809 (46%)

Query:     2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
             IP  +GNLS+L  L LS YN  L     S +  LS L  L++SS   S    S   I +L
Sbjct:   141 IPSSIGNLSHLTSLHLS-YNQFLGLIPSS-IENLSRLTSLHLSSNQFSGQIPSS--IGNL 196

Query:    62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
               L  L+LS  +     P S  N S+LT L L  N+F GQIPS +GNL  L YL LS+N 
Sbjct:   197 SHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNN 256

Query:   122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             F   +P     LN L  L + SN+L GN+  + L NLT +  LLLS N +  G IP +  
Sbjct:   257 FVGEIPSSFGNLNQLIVLQVDSNKLSGNVP-ISLLNLTRLSALLLSHN-QFTGTIPNNIS 314

Query:   182 RFCKLKSF---STGFTN------------LSQDISE-----ILGIFSACVANELESLDLG 221
                 L  F   +  FT             +  D+S+      L   +    + L+ L +G
Sbjct:   315 LLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIG 374

Query:   222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD-LSKNELNGTVSEI 280
             S    G +   L RF  L   DLS+       P+     ++L+ LD L  + L  T  ++
Sbjct:   375 SNNFIGTIPRSLSRFVNLTLFDLSHLNTQCR-PVDFSIFSHLKSLDDLRLSYLTTTTIDL 433

Query:   281 HFVNLTKLVTFRA---NGNSLIFKINPNWV---PPFQ-LTGLGVRSCRLGPRFPLWLQSQ 333
             + + L    T R+   +GN L+   N + V   PP Q +  L +  C +   FP  L++Q
Sbjct:   434 NDI-LPYFKTLRSLDISGN-LVSATNKSSVSSDPPSQSIQSLYLSGCGITD-FPEILRTQ 490

Query:   334 KKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSI- 392
              +L  L +S+ +I  ++P   W ++   ++LN+S N             +  V     I 
Sbjct:   491 HELGFLDVSNNKIKGQVPGWLW-TLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIH 549

Query:   393 FDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXXXXXXX- 451
                SNN  +G I   IC G    +++    LS+N+++G IP C                 
Sbjct:   550 LFASNNNFTGKIPSFIC-G---LRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNN 605

Query:   452 FTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511
              +G LP  I                 G +P S   F+ LE L++  N +    P W+   
Sbjct:   606 LSGGLPKHI--FESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSS- 662

Query:   512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP-RCINNFSAMATTDSS- 569
              S+L +L LRSN FHG  PI       L+I+D+++N+ +GT+P      +SAM++   + 
Sbjct:   663 LSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNE 720

Query:   570 DQSNDIFYASLGDEKIVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL 628
             DQSN+ +   +G     +D++++M KG  +E   IL +   +D S N F GE+P  +  L
Sbjct:   721 DQSNEKY---MGSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLL 777

Query:   629 QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXX 688
             + L  LN S N F G IP ++G + ++ESLD S N+L+G IPQ +               
Sbjct:   778 KELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQ 837

Query:   689 XXGEIPSSTQLQSFGGSSFADN-DLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTL 747
               G +P  TQ +    S+F +N  L G  L    +        QN     E+ DE + + 
Sbjct:   838 LAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEIS- 896

Query:   748 YISMALGFVVG--FWCFIGPLLI--KRRW 772
             +I+ A+GF+ G  F   IG +L+  K  W
Sbjct:   897 WIAAAIGFIPGIVFGLTIGYILVSYKPEW 925

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 241/791 (30%), Positives = 361/791 (45%)

Query:    25 HADT-ISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSA 83
             H+++ +S L     L  L +S  +LS    S   I +L  L  L LS      + P S  
Sbjct:    99 HSNSNLSMLQNFHFLTTLDLSYNHLSGQISSS--IGNLSHLTTLDLSGNNFSGWIPSSLG 156

Query:    84 NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143
             N   LT+L L +N F G+IPS LGNL+ L +LDLS N F   +P     LN L  L L +
Sbjct:   157 NLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDN 216

Query:   144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI 203
             N+L GN+  L + NLT +  + LS N +  G +P +      L+SFS    N    I   
Sbjct:   217 NKLSGNLP-LEVINLTKLSEISLSHN-QFTGTLPPNITSLSILESFSASGNNFVGTIPSS 274

Query:   204 LGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANL 263
             L    +     L++  L     FG++++       L  L L    + G IP S+ ++ NL
Sbjct:   275 LFTIPSITLIFLDNNQLSGTLEFGNISSP----SNLLVLQLGGNNLRGPIPTSISRLVNL 330

Query:   264 EYLDLSKNELNGTVS-EI--HFVNLTKLVTFRANGNSLI--------FK------INPNW 306
               LDLS   + G V   I  H   L  L    +N  + I        FK      ++ N 
Sbjct:   331 RTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNH 390

Query:   307 V----------PPFQLTG-LGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
             V          PP  L G L +  C +   FP  L++Q+++  L IS+ +I  ++P   W
Sbjct:   391 VLVTNKSSVSDPPLGLIGSLNLSGCGI-TEFPDILRTQRQMRTLDISNNKIKGQVPS--W 447

Query:   356 NSIFQYWFLNISGNQMYG--GVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
               + Q  +++IS N   G     K +   +P   ++   F  SNN  SG I   IC    
Sbjct:   448 -LLLQLEYMHISNNNFIGFERSTKLEKTVVPK-PSMKHFFG-SNNNFSGKIPSFICS--- 501

Query:   414 FSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXXXXXXX-FTGSLPMSIGTXXXXXXXXXX 472
               +++    LS N+FSG IP C   +              +GSLP +I            
Sbjct:   502 -LRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVS 558

Query:   473 XXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532
                  G +P S  +F+ LE L++  N +    P W+     +L +L LRSN FHG   I 
Sbjct:   559 HNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSS-LKKLQVLVLRSNAFHGR--IH 615

Query:   533 LCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSS-DQSNDIFYASLGDEKIVEDAL 590
               R   L+I+D++ N+ +GT+P  C   ++ M + + + D+ N+ +  S G      D++
Sbjct:   616 KTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGS-G---YYHDSM 671

Query:   591 LVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649
             ++M KG  +E   IL +   +D S N F GE+P  +  L+ L  LN S N FTG IP ++
Sbjct:   672 VLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSM 731

Query:   650 GVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGGSSFAD 709
             G +R +ESLD S N+LSG IPQ +                 G++P  TQ ++   SSF +
Sbjct:   732 GNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEE 791

Query:   710 N-DLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGF--WCFIGPL 766
             N  LCG PL  C      V  +    G  E  +      +I+ A+GF  G      IG +
Sbjct:   792 NLGLCGRPLEECR-----VVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHI 846

Query:   767 LI--KRRWRYK 775
             ++  K RW +K
Sbjct:   847 VLSSKPRWFFK 857

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 244/809 (30%), Positives = 372/809 (45%)

Query:     2 IPHQLGNLSNLQYLDLSGYNFKLHA-DTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
             I + +GNLS L YL+L    F   A  +I  LS L+ L   Y        +S     I  
Sbjct:   161 ILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSS-----IGG 215

Query:    61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
             L  L  L L   K     P S  N S+LTTLDLS N F GQIPS +GNL+ L +L L  N
Sbjct:   216 LSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSN 275

Query:   121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
              F   +P     LN L  L +  N+L GN  ++ L NLT +  L LS N++  G +P + 
Sbjct:   276 NFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNV-LLNLTGLSLLSLS-NNKFTGTLPPNI 333

Query:   181 GRFCKLKSFS------TG------FT--NLS------QDISEILGIFSACVANELESLDL 220
                  L  F       TG      FT  +L+        +   L   +    + L  LD+
Sbjct:   334 TSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDI 393

Query:   221 GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLE-YLDLSKNELNGT--V 277
             G+    G + + + +   L  LD+S+    G +  S+   ++L+  LDL+ + LN T  +
Sbjct:   394 GNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSI--FSHLKSLLDLNISHLNTTTRI 451

Query:   278 SEIHFVNLTK-LVTFRANGNSLIFKINPNWV--PPFQLT-GLGVRSCRLGPRFPLWLQSQ 333
                +F++  K L+    +GN  +   N + V  PP QL   L +  C +   FP ++++Q
Sbjct:   452 DLNYFLSYFKRLLLLDLSGNH-VSATNKSSVSDPPSQLIQSLYLSGCGI-TEFPEFVRTQ 509

Query:   334 KKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF 393
              +L  L IS+ +I  ++P   W     Y ++N+S N + G    F  PS P  + L  + 
Sbjct:   510 HELGFLDISNNKIKGQVPDWLWRLPILY-YVNLSNNTLIG----FQRPSKPEPSLLYLLG 564

Query:   394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXXXXXXX-F 452
               SNN   G I   IC G    +++    LS N+F+G IP C  +               
Sbjct:   565 --SNNNFIGKIPSFIC-G---LRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHL 618

Query:   453 TGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERF 512
             +G LP  I                 G +P S + F+ LE L++  N +    P W+    
Sbjct:   619 SGGLPKQI--FEILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSS-L 675

Query:   513 SRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP-RCINNFSAMATTDSS-D 570
              +L +L LRSN FHG  PI       L+I+D+++N  +GT+P      +SAM++   + D
Sbjct:   676 PKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNED 733

Query:   571 QSNDIFYASLGDEKIVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ 629
             QSN+ +   +G     +D++++M KG  +E   IL +   +D S N F GE+P  +  L+
Sbjct:   734 QSNEKY---MGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLK 790

Query:   630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXX 689
              L  L+ S N F+G +P ++G + ++ESLD S N+L+G IPQ +                
Sbjct:   791 ELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQL 850

Query:   690 XGEIPSSTQLQSFGGSSFADN-DLCGAPLPN-CTKKSVLVTDDQNRIGNEEDGDETDWTL 747
              G +P   Q  +   S+F DN  L G+ L   C       +  Q      E+ DE D   
Sbjct:   851 AGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPETEEEDE-DLIS 909

Query:   748 YISMALGFVVG--FWCFIGPLLI--KRRW 772
             +I+ A+GF  G  F    G +L+  K  W
Sbjct:   910 WIAAAIGFGPGIAFGLMFGYILVSYKPEW 938

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 217/739 (29%), Positives = 340/739 (46%)

Query:    51 ASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLT 110
             ++ SL  + +L  L  L LS+       P    NFS LTTLDLS+N F G IPS +GNL+
Sbjct:   108 SNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLS 167

Query:   111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
              L +LDLS N+F   +P +   +N L  L + SN L G I  L L NL  +  L LS N 
Sbjct:   168 QLTFLDLSGNEFVGEMP-FFGNMNQLTNLYVDSNDLTG-IFPLSLLNLKHLSDLSLSRNQ 225

Query:   171 ELGG--KIPTSFGRFCKLKSFSTGFTN-LSQDISEILGIFSACVANE------------- 214
               G      +S       +++   FT  L   +  I  + S  + N              
Sbjct:   226 FTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIASLTSINLRNNQLNGTLEFGNISS 285

Query:   215 ---LESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL-GQIANLEYLDLSK 270
                L  LD+ +    G +   + +F  L  LDLS+    G +  S+   + +L+ L+LS 
Sbjct:   286 PSTLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSH 345

Query:   271 NELNGTV--SEIHFVNLTKLVTFRANGN--SLIFKINPNWVPPFQLTG-LGVRSCRLGPR 325
                  T+  + +   +L  + +   +GN  S   KI+     P QL   L +  C +   
Sbjct:   346 LNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGI-TE 404

Query:   326 FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPL 385
             FP  L+SQ K+ +L IS+ +I  ++P   W ++ +  F+++S N ++ G  +     + L
Sbjct:   405 FPELLRSQHKMTNLDISNNKIKGQVPGWLW-TLPKLIFVDLSNN-IFTGFERSTEHGLSL 462

Query:   386 VTNLGSIFDL-SNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXX 444
             +T     + + SNN  +G I   IC      +++    LS N+ +G IP C  N      
Sbjct:   463 ITKPSMQYLVGSNNNFTGKIPSFICA----LRSLITLDLSDNNLNGSIPPCMGNLKSTLS 518

Query:   445 XXXXXXX-FTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGN 503
                       G LP SI                 G +P SF   + LE L++  N +   
Sbjct:   519 FLNLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDT 576

Query:   504 IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP-RCINNFSA 562
              P W+     +L +L LRSN FHG  PI      +L+I+++++N  SGT+P     N++A
Sbjct:   577 FPFWLSS-LKKLQVLVLRSNAFHG--PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNA 633

Query:   563 MATTDSSDQSNDIFYASLGDE-KIVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGE 620
             M++  +++  +   Y  +GD  +   D++++M KG  +E   IL +   +D S+N   GE
Sbjct:   634 MSSLMATEDRSQEKY--MGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGE 691

Query:   621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXX 680
             +P  +  L+ L  LN S N FTG IP ++G +R +ESLD S N+LSG IPQ +       
Sbjct:   692 IPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLA 751

Query:   681 XXXXXXXXXXGEIPSSTQLQSFGGSSFADND-LCGAPLPNCTKKSVLVTDDQNRIGNEED 739
                       G +P  TQ +    SSF DN  L G+ L             Q+     E+
Sbjct:   752 YMNFSHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEE 811

Query:   740 GDETDWTLYISMALGFVVG 758
              D   ++ +I+ A+GF  G
Sbjct:   812 EDREVFS-WIAAAIGFGPG 829

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 222/722 (30%), Positives = 329/722 (45%)

Query:    58 INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLT-SLKYLD 116
             I + P+LK L LSF       P    N + L  LDLS+N F G +P  +  L   LKYLD
Sbjct:    83 ICNFPNLKSLNLSFNYFAGEFPTVLYNCTKLQYLDLSQNLFNGSLPDDINRLAPKLKYLD 142

Query:   117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-K 175
             L+ N F   +P  + +++ L+ L+L  +   G   S  + +L+ ++ L L+ ND+    K
Sbjct:   143 LAANSFAGDIPKNIGRISKLKVLNLYMSEYDGTFPS-EIGDLSELEELQLALNDKFTPVK 201

Query:   176 IPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR 235
             +PT FG+  KLK       NL  +IS +  +F      +L+ +DL    + G + + L  
Sbjct:   202 LPTEFGKLKKLKYMWLEEMNLIGEISAV--VFENMT--DLKHVDLSVNNLTGRIPDVLFG 257

Query:   236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
              K L  L L    + G IP S+    NL +LDLS N LNG++ E    NLT L       
Sbjct:   258 LKNLTELYLFANDLTGEIPKSISA-KNLVHLDLSANNLNGSIPE-SIGNLTNLELLYLFV 315

Query:   296 NSLIFKINPNWVPPF-QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF 354
             N L  +I P  +    +L  L + + +L    P  +    KL    +S  +++ K+P   
Sbjct:   316 NELTGEI-PRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQLTGKLPENL 374

Query:   355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS--IFHLICQGE 412
              +   +   + +  N + G +P+    S+     L S+  L NN  SGS  I +      
Sbjct:   375 CHG-GKLQSVIVYSNNLTGEIPE----SLGDCETLSSVL-LQNNGFSGSVTISNNTRSNN 428

Query:   413 NFSKNIEFF----------QLSKNHFSGEIPDCWMNWPXXXXXXXXXXXFTGSLPMSIGT 462
             NF+  I  F           LS N F+G IP C  N              +GS+P +I T
Sbjct:   429 NFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGSIPENIST 488

Query:   463 XXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRS 522
                            G +P S    + LE L++  N++    P W+ +   +L +L LRS
Sbjct:   489 SVKSIDIGHNQLA--GKLPRSLVRISSLEVLNVESNKINDTFPFWL-DSMQQLQVLVLRS 545

Query:   523 NKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDS-SDQSNDIFYASL 580
             N FHG   I     + L+I+D++ N+ +GT+P     N++AM +     DQ     Y   
Sbjct:   546 NAFHGS--INQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRT 603

Query:   581 GDEKIVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN 639
                    D+++VM KG  +E   ILN    ID S N F GE+P  V  L+ L  LN S N
Sbjct:   604 N---YYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLKELHVLNLSNN 660

Query:   640 LFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQL 699
              FTG IP ++G +  +ESLD S N+LSG IP  +                 G +P  TQ 
Sbjct:   661 GFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFVGLVPGGTQF 720

Query:   700 QSFGGSSFADND-LCGAPLPNCTKKSVLVTDDQNRIGN-EEDGDET-DWTLYISMALGFV 756
             Q+   SSFADN  L G  L          T  Q+ +   EED +E  +WT   + A+G +
Sbjct:   721 QTQPCSSFADNPRLFGLSLERVCVDIHKKTPQQSEMPEPEEDEEEVMNWT---AAAIGSI 777

Query:   757 VG 758
              G
Sbjct:   778 PG 779

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 229/793 (28%), Positives = 356/793 (44%)

Query:     2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
             +P   GN   L+ L+L G N  L  +  + L  LS L  L +S  N     + L  + +L
Sbjct:   121 LPDSSGNFKYLRVLNLLGCN--LFGEIPTSLRSLSYLTDLDLS-YNDDLTGEILDSMGNL 177

Query:    62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
               L+ L L+ CK     P S  N + LT LDLS N F G++P  +GNL SL+ L+L    
Sbjct:   178 KHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCN 237

Query:   122 FNSVVPGWLSKLNDLEFLSLQSNRL--QGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
             F   +P  L  L++L  L +  N    +G  S   L  LT  Q +LL+ +      +  S
Sbjct:   238 FFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTN--VDLS 295

Query:   180 FGRF-CKLKSFSTGFTNLSQ-DIS--EILGIF--SACVANELESLDLGSCQIFGHMT-NQ 232
               +F   L S  +  + L   DIS     G    S  +   L  LDLG+    G +    
Sbjct:   296 SNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGN 355

Query:   233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
             +     L  L +    ++G IP S+ ++  L  L LS  +  G V    F+ L  L +  
Sbjct:   356 ISSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLD 415

Query:   293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
              +G +L   I+ +   P  +  L + SC +  +FP +L++Q  L  L IS+ +I  ++P 
Sbjct:   416 LSGINL--NISSSHHLPSHMMHLILSSCNIS-QFPKFLENQTSLYHLDISANQIEGQVPE 472

Query:   353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGE 412
               W  +    ++NI+ N   G +    +P    +         S+N  SG I   +C+  
Sbjct:   473 WLWR-LPTLRYVNIAQNAFSGELTMLPNPIYSFIA--------SDNKFSGEIPRAVCE-- 521

Query:   413 NFSKNIEFFQLSKNHFSGEIPDCW-MNWPXXXXXXXXXXXFTGSLPMSIGTXXXXXXXXX 471
                  I    LS N+FSG IP C+ ++              +G +P              
Sbjct:   522 -----IGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEE-SLHGYLRSLDV 575

Query:   472 XXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDF-- 529
                   G  P S  N + L+ L++ EN +    P+W+ +    L +L LRSN+FHG    
Sbjct:   576 GSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGPIFS 634

Query:   530 PIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMAT-TDSSDQSNDIFYASLGD--EKI 585
             P      + L+  D++ N  SG +P      +S M++  D  D  N   +  +GD  E  
Sbjct:   635 PGDSLSFSKLRFFDISENRFSGVLPSDYFVGWSVMSSFVDIID--NTPGFTVVGDDQESF 692

Query:   586 VEDALLVMKGFLVEYK-SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644
              +  +L +KG  +E   S   + + ID+S N   G++P  +  L+ L  LN S N FTG 
Sbjct:   693 HKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGH 752

Query:   645 IPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGG 704
             IP ++  + +++SLD S N+LSG IP  +                 G IP  TQ+QS   
Sbjct:   753 IPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNS 812

Query:   705 SSFADND-LCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWC-- 761
             SSFA+N  LCGAPL    +K     +++++   E+D     W   ++ A+G+V G +C  
Sbjct:   813 SSFAENPGLCGAPL----QKKCGGEEEEDKEKEEKDKG-LSW---VAAAIGYVPGLFCGL 864

Query:   762 FIGPLLI--KRRW 772
              IG +L   KR W
Sbjct:   865 AIGHILTSYKRDW 877

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 5.0e-62, P = 5.0e-62
 Identities = 224/777 (28%), Positives = 361/777 (46%)

Query:     2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN-LSKASDSLLVINS 60
             +P  +GNLS L  L LS  +F    +  S L  L  L  L + + + + K   SL  ++ 
Sbjct:   200 VPSSIGNLSYLTTLRLSRNSF--FGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSH 257

Query:    61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
             L S+   K +F  +   P  S  N S LT+  LS+N   G+IPS  GNL  L  L++  N
Sbjct:   258 LTSIDLHKNNF--VGEIP-FSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSN 314

Query:   121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL--SGNDELGGKIPT 178
             + +   P  L  L  L  LSL +NRL G + S    N++S+  L L  +  +   G +P+
Sbjct:   315 KLSGSFPIALLNLRKLSTLSLFNNRLTGTLPS----NMSSLSNLKLFDATENHFTGPLPS 370

Query:   179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
             S      LK+     T  +  ++  LG  +    + L  L LG+    G +   + +   
Sbjct:   371 SLFNIPSLKTI----TLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVN 426

Query:   239 LNFLDLSNTTMDGSIPLSL-GQIANLEYLDLSKNELNGTVSEIHFVNLTKLV-TFRANGN 296
             L  LDLSN    G +  ++   + ++EYL+LS      T+     ++  KL+ T   +G 
Sbjct:   427 LKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSG- 485

Query:   297 SLIFKINPNWVPPFQL---TGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353
             S +   N + +    L   + L +  C +   FP +L+SQ+ +  L IS+ +I  ++P  
Sbjct:   486 SHVSTTNKSSLSNSSLVLISQLYLSGCGI-TEFPKFLRSQELMLTLDISNNKIKGQVPGW 544

Query:   354 FWN-SIFQYWFLNISGNQMYG--GVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQ 410
              W   +  Y  +N+S N   G     K    S+     +  +F  SNN  +G+I   IC+
Sbjct:   545 LWMLPVLNY--VNLSNNTFIGFERSTKLGLTSIQEPPAMRQLF-CSNNNFTGNIPSFICE 601

Query:   411 GENFSKNIEFFQLSKNHFSGEIPDCWMNW--PXXXXXXXXXXXFTGSLPMSIGTXXXXXX 468
                 S  ++F   S N F+G IP C  N   P            +G LP +I        
Sbjct:   602 LPYLS-TLDF---SNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENI--FESLIS 655

Query:   469 XXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGD 528
                      G +P S ++ + L  L++  N++    P W+      L +L LRSN F+G 
Sbjct:   656 LDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSS-LQELQVLVLRSNAFYG- 713

Query:   529 FPIQLCRLASLQILDVAYNNLSGTIP-RCINNFSAMATTDSS-DQSNDIFYASL--GDEK 584
              PI+  + + L+I+D++ N  +GT+P     N++AM + D + DQSN    +++    + 
Sbjct:   714 -PIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDY 772

Query:   585 IVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTG 643
                D++++M KG  +E + +L +   ID S N F GE+P  +  L+ L  LN S N  +G
Sbjct:   773 FYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSG 832

Query:   644 RIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFG 703
              I  ++G + ++ESLD S N+LSG IPQ +                 G +P  TQ Q+  
Sbjct:   833 HIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQK 892

Query:   704 GSSFADND-LCGAPLPN-CTKKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVG 758
              SSF DN  L G  L   C       T  Q+ +  E + DE +   +I+  +GF++G
Sbjct:   893 CSSFEDNHGLYGPSLEKICDIHGK--TPQQSDMAPEPEEDEEEVISWIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.8e-60, P = 1.8e-60
 Identities = 232/811 (28%), Positives = 356/811 (43%)

Query:     2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
             I + +GNLS L  LDLS +N +      S +  LS L  L +S         S   I +L
Sbjct:    98 ILNSIGNLSRLTSLDLS-FN-QFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSS--IGNL 153

Query:    62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
               L  L LS  +     P S    S+LT L LS N++ GQIPS +GNL+ L  L LS N 
Sbjct:   154 SHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNN 213

Query:   122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             F   +P     LN L  L +  N+L GN  ++ L NLT +  + LS N++  G +P +  
Sbjct:   214 FYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNV-LLNLTGLSVVSLS-NNKFTGTLPPNIT 271

Query:   182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
                 L +F       +      L I  +     L    L     FG++++       L +
Sbjct:   272 SLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTLEFGNISSP----SNLQY 327

Query:   242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF-----------VNLTKLVT 290
             L++ +    G IP S+ ++ NL+ L +S   LN     + F           + L+ L T
Sbjct:   328 LNIGSNNFIGPIPSSISKLINLQELGIS--HLNTQCRPVDFSIFSHLKSLDDLRLSYLTT 385

Query:   291 FRANGNSLI--FK------INPNWVPPFQLTGLG-------VRSCRLG----PRFPLWLQ 331
                + N ++  FK      ++ N V     + +        ++S  L       FP  L+
Sbjct:   386 TTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILR 445

Query:   332 SQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGV-PKFDSPSMPLVTNLG 390
             +Q +L  L +S+ +I  ++P   W ++   ++LN+S N   G   P    PSM  +  LG
Sbjct:   446 TQHELGFLDVSNNKIKGQVPGWLW-TLPNLFYLNLSNNTFIGFQRPTKPEPSMAYL--LG 502

Query:   391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXXXXXX 450
             S     NN  +G I   IC+     +++    LS N+FSG IP C  N            
Sbjct:   503 S-----NNNFTGKIPSFICE----LRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQ 553

Query:   451 X-FTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMG 509
                +G  P  I                 G +P S   F+ LE L++  N +    P W+ 
Sbjct:   554 NNLSGGFPEHI--FESLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLS 611

Query:   510 ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP-RCINNFSAMATTDS 568
                 +L +L LRSN FHG  PI       L+I+D+++N+ +G++P      +S M++  +
Sbjct:   612 S-LQKLQVLVLRSNAFHG--PINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGT 668

Query:   569 SDQSNDIFYASLGDEKIVEDALLVM-KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN 627
              +  +++ Y   G     +D++++M KG   E   IL +   +D S N F GE+P  +  
Sbjct:   669 YEDGSNVNYLGSG---YYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGL 725

Query:   628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXX 687
             L+ L  LN S N FTG IP +IG + ++ESLD S N+L G IPQ +              
Sbjct:   726 LKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHN 785

Query:   688 XXXGEIPSSTQLQSFGGSSFADN-DLCGAPLPN-CTKKSVLVTDDQNRIGNEEDGDETDW 745
                G +P   Q  +   SSF  N  L G+ L   C       +  Q      E+ DE D 
Sbjct:   786 QLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPASHQQFETPQTEEEDE-DL 844

Query:   746 TLYISMALGFVVG--FWCFIGPLLI--KRRW 772
               +I+ A+GF  G  F    G +L+  K  W
Sbjct:   845 ISWIAAAIGFGPGIAFGLMFGYILVSYKPEW 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 232/806 (28%), Positives = 348/806 (43%)

Query:     4 HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPS 63
             H +  LS  + +D   +       T+  +  L+L+   YI++ +L K+S SL     L  
Sbjct:    60 HHVTTLSWNKTVDCCSWEGVTCDATLGEVISLNLVS--YIANTSL-KSSSSLF---KLRH 113

Query:    64 LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
             L+ L+LS C L    P S  N S LT LDLS N+  G+ P  +GNL  L+Y+DL  N   
Sbjct:   114 LRHLELSHCNLQGEIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNALG 173

Query:   124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRF 183
               +P   + L  L  L L+ N+  G    + L NLTS+  + LS N      I     + 
Sbjct:   174 GNIPTSFANLTKLSELHLRQNQFTGG--DIVLSNLTSLSIVDLSSN-YFNSTISADLSQL 230

Query:   184 CKLKSF----STGFTNLSQDISEILGIFSACVA-NELESLDLGSCQIFGHMTNQLGRFKG 238
               L+ F    ++ F      +  I  +   C++ N+ E    G    FG+ T+       
Sbjct:   231 HNLERFWVSENSFFGPFPSFLLMIPSLVDICLSENQFE----GPIN-FGNTTSS----SK 281

Query:   239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTV-SEIH-FVNLTKLVTFRAN-G 295
             L  LD+S   +DG IP S+  + +LE+L+LS N   G V S I   VNL  L     N G
Sbjct:   282 LTELDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQVPSSISKLVNLDGLYLSHNNFG 341

Query:   296 N---SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
                 S IFK+         L  L +     G R P  +     L+ L +S  +    +P+
Sbjct:   342 GQVPSSIFKL-------VNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQ 394

Query:   353 RFWNSIFQYWFLNISGNQM--YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQ 410
               W S  +   +++S N    +G + +    S      L   +DLS+N+L G I   IC 
Sbjct:   395 CIWRSS-KLDSVDLSYNSFNSFGRILELGDES------LERDWDLSSNSLQGPIPQWICN 447

Query:   411 GENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXXXXXXXFTGSLPMSIGTXXXXXXXX 470
                FS    F   S NH +G IP C  N              +G +P             
Sbjct:   448 FRFFS----FLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLD 503

Query:   471 XXXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
                    G +P SF N   +E L++  N++    P W+G     L +L LRSN F+G   
Sbjct:   504 VSLNNLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGS-LQYLTVLVLRSNTFYGPVY 562

Query:   531 IQLCRLA--SLQILDVAYNNLSGTIPR-CINNFSAMATTDSS-----DQSNDIFYAS--- 579
                  L   S++I+D++ NN  G++P+    N++ M++         D   +I       
Sbjct:   563 KASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIAIPGSNY 622

Query:   580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN 639
             +GD+   +   LV KG   +++ I    + ID S N FSG +P  +  L  L  LN S N
Sbjct:   623 MGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGN 682

Query:   640 LFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQL 699
              FTG IP ++  +  +E+LD S N LSG IP+ +                 G +P STQ 
Sbjct:   683 AFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLVPQSTQF 742

Query:   700 QSFGGSSFADND-LCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTL--YISMALGFV 756
              S   SSF  N  L G     C +  V +      +  EE   E + T+  +I+ A+ F 
Sbjct:   743 GSQNCSSFMGNPRLYGLD-QICGETHVPIPTS---LHPEEPLLEPEETVLNWIAAAIAFG 798

Query:   757 VGFWC--FIGPLLI--KRRWRY-KYC 777
              G +C   IG +    K +W   K+C
Sbjct:   799 PGVFCGLVIGHIFTSYKHKWLMAKFC 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 202/689 (29%), Positives = 308/689 (44%)

Query:    47 NLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL 106
             N  K + SL     L  L+ L L+ C L+   P S  N S LT ++L  N+F G+IP+ +
Sbjct:    98 NYLKTNSSLF---KLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASI 154

Query:   107 GNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI-SSLGLENLTSIQTLL 165
             GNL  L++L L+ N     +P  L  L+ L  L L SNRL G I  S+G  +L  ++ L 
Sbjct:   155 GNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG--DLKQLRNLS 212

Query:   166 LSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN--ELESLDLGSC 223
             L+ N+ L G+IP+S G    L        +L    ++++G   A + N  EL  +   + 
Sbjct:   213 LASNN-LIGEIPSSLGNLSNL-------VHLVLTHNQLVGEVPASIGNLIELRVMSFENN 264

Query:   224 QIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV 283
              + G++         L+   LS+     + P  +    NLEY D+S N  +G   +   +
Sbjct:   265 SLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPK-SLL 323

Query:   284 NLTKLVTFRANGNSLIFKIN-PNWVPPFQLTGLGVRSCRL-GPRFPLWLQSQKKLNDLYI 341
              +  L +     N     I   N     +L  L +   RL GP  P  +     L +L I
Sbjct:   324 LIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGP-IPESISRLLNLEELDI 382

Query:   342 SSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPK--FDSPSMPLVTNLGSIF------ 393
             S    +  IP    + +     L++S N + G VP   +   +M L  N  S F      
Sbjct:   383 SHNNFTGAIPPTI-SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQE 441

Query:   394 -------DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXXXX 446
                    DL++N+  G I ++IC+      ++ F  LS N FSG IP C  N+       
Sbjct:   442 EALIEELDLNSNSFQGPIPYMICK----LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKEL 497

Query:   447 XXXXX-FTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENELVGNIP 505
                   F+G+LP                    G  P S  N   LE +++  N++    P
Sbjct:   498 NLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFP 557

Query:   506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLA--SLQILDVAYNNLSGTIPRC-INNFSA 562
             +W+ E    L +LNLRSNKF+G    +   +   SL+I+D+++NN SGT+P    +N+  
Sbjct:   558 SWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKD 616

Query:   563 MAT-TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
             M T T+  DQ    F+     +    +  +V KG  + ++ I    R ID S N  +G +
Sbjct:   617 MTTLTEEMDQYMTEFWRYA--DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNI 674

Query:   622 PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXX 681
             P  +  L+ L+ LN S N FT  IP  +  +  +E+LD S N+LSG IPQ +        
Sbjct:   675 PESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSY 734

Query:   682 XXXXXXXXXGEIPSSTQLQSFGGSSFADN 710
                      G +P  TQ Q    SSF DN
Sbjct:   735 MNFSHNLLQGPVPRGTQFQRQKCSSFLDN 763

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	793
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-48
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  218 bits (557), Expect = 9e-60
 Identities = 200/724 (27%), Positives = 306/724 (42%), Gaps = 182/724 (25%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLS------KASDSLLVINSL 61
           N S +  +DLSG N       IS     ++ +  YI ++NLS         D +   +S 
Sbjct: 67  NSSRVVSIDLSGKN-------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS- 118

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            SL+ L LS         +   +  +L TLDLS N   G+IP+ +G+ +SLK LDL  N 
Sbjct: 119 -SLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
               +P  L+ L  LEFL+L SN+L G                          +IP   G
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVG--------------------------QIPRELG 209

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
           +   LK    G+ NLS                             G +  ++G    LN 
Sbjct: 210 QMKSLKWIYLGYNNLS-----------------------------GEIPYEIGGLTSLNH 240

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           LDL    + G IP SLG + NL+YL L +N+L+G +    F +L KL++   + NSL  +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGE 299

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY 361
           I                     P   + LQ+   L  L++ S   + KIP     S+ + 
Sbjct: 300 I---------------------PELVIQLQN---LEILHLFSNNFTGKIPVAL-TSLPRL 334

Query: 362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421
             L +  N+  G +PK          NLG                          N+   
Sbjct: 335 QVLQLWSNKFSGEIPK----------NLGK-----------------------HNNLTVL 361

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481
            LS N+ +GEIP+   +   L  L L +N+  G +P S+G   SL  + L++N  SG +P
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 482 TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQI 541
           + F    ++  LD+  N L G I +   +  S L +L+L  NKF G  P        L+ 
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPS-LQMLSLARNKFFGGLP-DSFGSKRLEN 479

Query: 542 LDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601
           LD++ N  SG +PR + + S +                                      
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQ------------------------------------ 503

Query: 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFS 661
                   + +S+N  SGE+P E+++ + L SL+ S+N  +G+IP +   M  +  LD S
Sbjct: 504 --------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 662 ANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCG----AP 716
            NQLSG IP+++ N+  L  +N+S+N+L+G +PS+    +   S+ A N DLCG    + 
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615

Query: 717 LPNC 720
           LP C
Sbjct: 616 LPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (470), Expect = 2e-48
 Identities = 172/536 (32%), Positives = 242/536 (45%), Gaps = 63/536 (11%)

Query: 2   IPHQLGNLS-NLQYLDLSGYNFKLHADTISWLSG-LSLLKHLYISSVNLSKASDSLLVIN 59
           IP  +   S +L+YL+LS  NF     T S   G +  L+ L +S+  LS   +    I 
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNNF-----TGSIPRGSIPNLETLDLSNNMLS--GEIPNDIG 161

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
           S  SLK L L    L    P S  N +SL  L L+ N+  GQIP  LG + SLK++ L +
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI-SSLGLENLTSIQTLLLSGNDELGGKIPT 178
           N  +  +P  +  L  L  L L  N L G I SSLG  NL ++Q L L  N +L G IP 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQN-KLSGPIPP 278

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
           S     KL S      +LS +I E++          LE L L S    G +   L     
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQL-----QNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSE--IHFVNLTKLVTFRANGN 296
           L  L L +    G IP +LG+  NL  LDLS N L G + E      NL KL+ F    N
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF---SN 390

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN 356
           SL  +I  +                        L + + L  + +     S ++P  F  
Sbjct: 391 SLEGEIPKS------------------------LGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 357 SIFQYWFLNISGNQMYGGV--PKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414
               Y FL+IS N + G +   K+D PS+ ++        L+ N   G +          
Sbjct: 427 LPLVY-FLDISNNNLQGRINSRKWDMPSLQML-------SLARNKFFGGLPDSFG----- 473

Query: 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN 474
           SK +E   LS+N FSG +P    +   L  L L  N  +G +P  + +   L+SL+L +N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
           +LSG IP SF+   +L  LD+ +N+L G IP  +G     L+ +N+  N  HG  P
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 1e-16
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 25/172 (14%)

Query: 606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665
            + G+ +      G +P +++ L+ LQS+N S N   G IP ++G + S+E LD S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 666 SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSF--ADN-DLCGAP-LPNCT 721
           +G IP+S+  L+ L  LNL+ N+L+G +P++   +    +SF   DN  LCG P L  C 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC- 537

Query: 722 KKSVLVTDDQNRIGNEEDGDETDWTLYISMALGFVVGFWCFIGPLLI--KRR 771
                             G        I +A G  V F   +   +   KRR
Sbjct: 538 ------------------GPHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 409 CQGENFSKN--IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSL 466
           CQ ++      I+   L      G IP+       L+ +NL  N+  G++P S+G+++SL
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 467 MSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN 523
             L+L  N  +G IP S    T L  L++  N L G +P  +G R       N   N
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 5e-11
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 25/110 (22%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
           L L N    G +P  I  L  L S+NL  N + G IP S  + T LE LD+  N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 505 PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP 554
           P  +G+                         L SL+IL++  N+LSG +P
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 74  LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKL 133
           L  F P   +    L +++LS N  +G IP  LG++TSL+ LDLS+N FN  +P  L +L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 134 NDLEFLSLQSNRLQGNI-SSLG 154
             L  L+L  N L G + ++LG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 6e-10
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 21/203 (10%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISW----LSGLSLLKHLYISSVNLSKASDSL-- 55
           +P +   L  + +LD+S  N +   ++  W    L  LSL ++ +   +  S  S  L  
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479

Query: 56  -------------LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI 102
                          + SL  L +LKLS  KL    P   ++   L +LDLS N+  GQI
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 103 PSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQ 162
           P+    +  L  LDLS NQ +  +P  L  +  L  +++  N L G++ S G     +I 
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA--FLAIN 597

Query: 163 TLLLSGNDELGGKIPTSFGRFCK 185
              ++GN +L G   TS    CK
Sbjct: 598 ASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 8e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 215 LESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN 274
           ++ L L +  + G + N + + + L  ++LS  ++ G+IP SLG I +LE LDLS N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 275 GTVSEIHFVNLTKLVTFRANGNSL 298
           G++ E     LT L     NGNSL
Sbjct: 480 GSIPE-SLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 30/73 (41%), Positives = 40/73 (54%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
           I+ L  L+ + LS   +    P S  + +SL  LDLS N F G IP  LG LTSL+ L+L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 118 SFNQFNSVVPGWL 130
           + N  +  VP  L
Sbjct: 498 NGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 14/261 (5%)

Query: 30  SWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLT 89
                L  L  L    +NL++   ++  +  L +L  L L    +   PPL     S+L 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 90  TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN 149
            LDLS+N+ +  +PS L NL +LK LDLSFN  + +    LS L++L  L L  N++  +
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKIS-D 200

Query: 150 ISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSA 209
           +    +E L++++ L LS N  +  ++ +S      L S      N  +D+ E +G  S 
Sbjct: 201 LPPE-IELLSALEELDLSNNSII--ELLSSLSNLKNL-SGLELSNNKLEDLPESIGNLS- 255

Query: 210 CVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269
                LE+LDL + QI     + LG    L  LDLS  ++  ++PL    +  LE L   
Sbjct: 256 ----NLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Query: 270 KNELNGTVSEIHFVNLTKLVT 290
              L     +++ + L   + 
Sbjct: 310 LLTLKALELKLNSILLNNNIL 330

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 91  LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
           L L     +G IP+ +  L  L+ ++LS N     +P  L  +  LE L L  N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 151 -SSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             SLG   LTS++ L L+GN  L G++P + G
Sbjct: 483 PESLGQ--LTSLRILNLNGN-SLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 23/60 (38%), Positives = 27/60 (45%)

Query: 87  SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
           +L +LDLS N            L +LK LDLS N   S+ P   S L  L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query: 215 LESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN 274
           L+S++L    I G++   LG    L  LDLS  + +GSIP SLGQ+ +L  L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 275 GTV 277
           G V
Sbjct: 504 GRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 7e-06
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 34/150 (22%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            +P +LG+LS L  L LS    KL  +    LS                          S
Sbjct: 490 AVPRKLGSLSELMQLKLSEN--KLSGEIPDELS--------------------------S 521

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
              L  L LS  +L    P S +    L+ LDLS+N+  G+IP  LGN+ SL  +++S N
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
             +  +P      +   FL++ ++ + GNI
Sbjct: 582 HLHGSLP------STGAFLAINASAVAGNI 605

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 441 RLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL 500
            L+ L+L NN  T     +   L +L  L+L  N L+ I P +F+    L +LD+  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 489 ILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
            ++ L +    L G IP  +  +   L  +NL  N   G+ P  L  + SL++LD++YN+
Sbjct: 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 549 LSGTIP 554
            +G+IP
Sbjct: 478 FNGSIP 483

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSG-LSLLKHLYISSVNLSKASDSLLVINS 60
           +P  L NL NL+ LDLS          +  L   LS L +L +S   +S     + ++++
Sbjct: 155 LPSPLRNLPNLKNLDLS----FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           L  L     S  +L      S +N  +L+ L+LS N+ +  +P  +GNL++L+ LDLS N
Sbjct: 211 LEELDLSNNSIIEL----LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS 167
           Q +S+    L  L +L  L L  N L   +  + L  L     L L 
Sbjct: 266 QISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
           +LK LDLS N+   +  G    L +L+ L L  N L   IS      L S+++L LSGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 58/251 (23%), Positives = 87/251 (34%), Gaps = 33/251 (13%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLH-ADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
              L     LQ LDLS           +  L   S L+ L +++  L      LL    L
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-AKGL 132

Query: 62  ----PSLKELKLSFCKLHHFP--PLSSA--NFSSLTTLDLSENEFQGQIPSRLG----NL 109
               P+L++L L   +L       L+ A      L  L+L+ N         L       
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 110 TSLKYLDLSFNQFN----SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL------- 158
            +L+ LDL+ N       S +   L+ L  LE L+L  N    N++  G   L       
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN----NLTDAGAAALASALLSP 248

Query: 159 -TSIQTLLLSGN---DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANE 214
             S+ TL LS N   D+    +         L           ++ +++L        NE
Sbjct: 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE 308

Query: 215 LESLDLGSCQI 225
           LESL +     
Sbjct: 309 LESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
           +LK L LS  +L   P  +     +L  LDLS N      P     L SL+ LDLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 38 LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
          LK L +S+  L+   D       LP+LK L LS   L    P + +   SL +LDLS N 
Sbjct: 2  LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 98 F 98
           
Sbjct: 60 L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 15/266 (5%)

Query: 440 PRLRMLNLRNNNFTGSL-PMSIGTLSSLMSLNL-RNNRLSGIIPTSFNNFTILEALDMGE 497
             +  L L  ++ T  L P S+  L SL  L+    + L G    +  N   L +LD+  
Sbjct: 45  VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGS--ENLLNLLPLPSLDLNL 102

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS-LQILDVAYNNLSGTIPRC 556
           N L  NI   +    + L  L+L +N    D P  +  L S L+ LD++ N +  ++P  
Sbjct: 103 NRLRSNISELL--ELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSP 158

Query: 557 INNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGID--ISK 614
           + N   +   D S          L +   + + L +    + +    + L+  ++     
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN-LDLSGNKISDLPPEIELLSALEELDLS 217

Query: 615 NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674
           NN   E+   ++NL+ L  L  S N     +P++IG + ++E+LD S NQ+S        
Sbjct: 218 NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSL--G 274

Query: 675 NLSFLNYLNLSNNNLNGEIPSSTQLQ 700
           +L+ L  L+LS N+L+  +P    L 
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLL 300

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
            L+SL+ S N  T         + +++ LD S N L+   P++ S L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRL 476
           N++   LS N  +      +   P L++L+L  NN T   P +   L SL SL+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	793
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
PLN03150	623	hypothetical protein; Provisional	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG4341	483	consensus F-box protein containing LRR [General fu	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.49
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.23
KOG4308	478	consensus LRR-containing protein [Function unknown	93.81
KOG4308	478	consensus LRR-containing protein [Function unknown	93.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.13
smart00370	26	LRR Leucine-rich repeats, outliers.	90.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.38
smart00370	26	LRR Leucine-rich repeats, outliers.	90.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.31
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6e-66  Score=621.75  Aligned_cols=541  Identities=32%  Similarity=0.519  Sum_probs=392.0

Q ss_pred             CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCccccccc-CCCCCCEEeCcCCcCccCCcccccCCCCCCEEE
Q 003813           62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG-NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS  140 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  140 (793)
                      .+++.|++++|.+++..+..|..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            3566666666666655555566666666666666666655554433 566666666666666555543  3456666666


Q ss_pred             ccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEc
Q 003813          141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDL  220 (793)
Q Consensus       141 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L  220 (793)
                      +++|.+.+.+|.. ++++++|++|++++|. +.+.+|..+.++++|++|++++|.+.+.+|..++.+     ++|++|++
T Consensus       147 Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L  219 (968)
T PLN00113        147 LSNNMLSGEIPND-IGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-----KSLKWIYL  219 (968)
T ss_pred             CcCCcccccCChH-HhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-----CCccEEEC
Confidence            6666665555554 5666666666666665 555555555555555555555555555555555444     55555555


Q ss_pred             cCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeee
Q 003813          221 GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF  300 (793)
Q Consensus       221 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  300 (793)
                      ++|++.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+  
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l--  296 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSL--  296 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCee--
Confidence            55555555555555555555555555555555555555555555555555555544443 344455555555554444  


Q ss_pred             ecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCC
Q 003813          301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS  380 (793)
Q Consensus       301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  380 (793)
                                            .+.+|.++..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|    
T Consensus       297 ----------------------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p----  349 (968)
T PLN00113        297 ----------------------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIP----  349 (968)
T ss_pred             ----------------------ccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCC----
Confidence                                  444555555555666666666655555544432 34445555555444443333    


Q ss_pred             CCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCC
Q 003813          381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI  460 (793)
Q Consensus       381 ~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  460 (793)
                                               ..    +..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+
T Consensus       350 -------------------------~~----l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~  400 (968)
T PLN00113        350 -------------------------KN----LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL  400 (968)
T ss_pred             -------------------------hH----HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence                                     11    1225788889999999988888888888999999999999998999989


Q ss_pred             CCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcC
Q 003813          461 GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ  540 (793)
Q Consensus       461 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  540 (793)
                      ..+++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+ ..++|+
T Consensus       401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~  478 (968)
T PLN00113        401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLE  478 (968)
T ss_pred             hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccce
Confidence            9999999999999999998999999999999999999999988888776 68999999999999998888765 458999


Q ss_pred             EEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceee
Q 003813          541 ILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGE  620 (793)
Q Consensus       541 ~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  620 (793)
                      .|++++|++++.+|..+.+++.|                                            +.|+|++|++++.
T Consensus       479 ~L~ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~  514 (968)
T PLN00113        479 NLDLSRNQFSGAVPRKLGSLSEL--------------------------------------------MQLKLSENKLSGE  514 (968)
T ss_pred             EEECcCCccCCccChhhhhhhcc--------------------------------------------CEEECcCCcceee
Confidence            99999999999888877766554                                            7899999999999


Q ss_pred             CccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccC
Q 003813          621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ  700 (793)
Q Consensus       621 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~  700 (793)
                      +|+.++++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+++|+++|+++|.+|..+++.
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~  594 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL  594 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCccccCC-CccCCC
Q 003813          701 SFGGSSFADN-DLCGAP  716 (793)
Q Consensus       701 ~~~~~~~~~n-~l~~~~  716 (793)
                      ++...++.|| .+||.+
T Consensus       595 ~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        595 AINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccChhhhcCCccccCCc
Confidence            9999999999 899865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-60  Score=574.48  Aligned_cols=539  Identities=31%  Similarity=0.467  Sum_probs=460.0

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCC-CCCccCCCCCCCCEEECcCccCCCcccccccCCCCCC
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK  113 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  113 (793)
                      ..+++.|++++|.+++..  +..+..+++|++|+|++|++++ ++...+.++++|++|+|++|.+++.+|.  +.+++|+
T Consensus        68 ~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CCcEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence            468999999999988753  4467889999999999999974 5555566899999999999999987775  4689999


Q ss_pred             EEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccC
Q 003813          114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGF  193 (793)
Q Consensus       114 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~  193 (793)
                      +|++++|.+.+..|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|. +.+.+|..++++++|+.|++++
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcC
Confidence            9999999999889999999999999999999998888876 8999999999999998 8889999999999999999999


Q ss_pred             CcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 003813          194 TNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL  273 (793)
Q Consensus       194 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  273 (793)
                      |.+++.+|..++.+     ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|.++.++++|++|++++|.+
T Consensus       222 n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        222 NNLSGEIPYEIGGL-----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             CccCCcCChhHhcC-----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            99999999998888     8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChh
Q 003813          274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR  353 (793)
Q Consensus       274 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  353 (793)
                      .+.+|. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|++.+.+|..
T Consensus       297 ~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            888876 6788888888888888876655555555555555555555555444544444444444444444444333322


Q ss_pred             HHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC
Q 003813          354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP  433 (793)
Q Consensus       354 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  433 (793)
                      +                                                      +    .+++|+.|++++|.+.+.+|
T Consensus       376 ~------------------------------------------------------~----~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        376 L------------------------------------------------------C----SSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             H------------------------------------------------------h----CcCCCCEEECcCCEecccCC
Confidence            2                                                      1    25778889999999988899


Q ss_pred             CCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc
Q 003813          434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS  513 (793)
Q Consensus       434 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  513 (793)
                      ..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+.  .+
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~  475 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SK  475 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cc
Confidence            9999999999999999999999999999999999999999999999988888999999999999999988888664  68


Q ss_pred             cCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhh
Q 003813          514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM  593 (793)
Q Consensus       514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (793)
                      +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.++++|                              
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------------------  525 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL------------------------------  525 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC------------------------------
Confidence            99999999999999999999999999999999999999999888776665                              


Q ss_pred             ccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813          594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSM  673 (793)
Q Consensus       594 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  673 (793)
                                    +.|+|++|.+++.+|..+.++++|++|||++|+++|.+|..+.++++|+.|++++|+++|.+|.. 
T Consensus       526 --------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-  590 (968)
T PLN00113        526 --------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-  590 (968)
T ss_pred             --------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-
Confidence                          78999999999999999999999999999999999999999999999999999999999999964 


Q ss_pred             cCCCCCCeEEcccCccc
Q 003813          674 SNLSFLNYLNLSNNNLN  690 (793)
Q Consensus       674 ~~l~~L~~L~ls~N~l~  690 (793)
                      +....+....+.+|+.-
T Consensus       591 ~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        591 GAFLAINASAVAGNIDL  607 (968)
T ss_pred             chhcccChhhhcCCccc
Confidence            33444555666777643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-39  Score=329.83  Aligned_cols=410  Identities=22%  Similarity=0.226  Sum_probs=291.5

Q ss_pred             CCEEECcCccCCCcccccccCCC--CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCC-CCCcEE
Q 003813           88 LTTLDLSENEFQGQIPSRLGNLT--SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL-TSIQTL  164 (793)
Q Consensus        88 L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~L~~L  164 (793)
                      -+.||.+.+.+.......+.+.-  .-+.|++++|++....+..|.++++|+++++..|.++ .||.  |+.. .+|+.|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L  130 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKL  130 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEE
Confidence            35677777777643323332221  3345777777777776677777777777777777776 6665  3332 235555


Q ss_pred             EcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeC
Q 003813          165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL  244 (793)
Q Consensus       165 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  244 (793)
                      +|.+|.                         ++..-.+.+..+     +.|+.|||+.|.|+......|..-.++++|+|
T Consensus       131 ~L~~N~-------------------------I~sv~se~L~~l-----~alrslDLSrN~is~i~~~sfp~~~ni~~L~L  180 (873)
T KOG4194|consen  131 DLRHNL-------------------------ISSVTSEELSAL-----PALRSLDLSRNLISEIPKPSFPAKVNIKKLNL  180 (873)
T ss_pred             eeeccc-------------------------cccccHHHHHhH-----hhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence            555553                         333333344444     66777777777776665566666667777777


Q ss_pred             cCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC
Q 003813          245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP  324 (793)
Q Consensus       245 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~  324 (793)
                      ++|+|+......|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|.+......                    
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l--------------------  239 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL--------------------  239 (873)
T ss_pred             ccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh--------------------
Confidence            777777766677777777777777777776 56665666666666666666655321111                    


Q ss_pred             CCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccc
Q 003813          325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI  404 (793)
Q Consensus       325 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~  404 (793)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (873)
T KOG4194|consen  240 --------------------------------------------------------------------------------  239 (873)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccc
Q 003813          405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSF  484 (793)
Q Consensus       405 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  484 (793)
                            .++.+++|+.|.|..|.+.....+.|..+.++++|+|+.|++......++-++++|+.|++|+|.|..+.++++
T Consensus       240 ------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  240 ------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             ------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence                  11225666677777777776777888889999999999999988778888889999999999999999999999


Q ss_pred             cCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCc
Q 003813          485 NNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA  564 (793)
Q Consensus       485 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  564 (793)
                      ..+++|+.|+|++|+|+ .+++.-+..+..|++|+|++|.++......|..+++|++|||++|.+++.+.+.        
T Consensus       314 sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------  384 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------  384 (873)
T ss_pred             hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------
Confidence            99999999999999998 677766667889999999999998666677888889999999999887655431        


Q ss_pred             cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc
Q 003813          565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR  644 (793)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  644 (793)
                                                                               ...|.++++|+.|+|.+|++...
T Consensus       385 ---------------------------------------------------------a~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  385 ---------------------------------------------------------AVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             ---------------------------------------------------------hhhhccchhhhheeecCceeeec
Confidence                                                                     12455677778888888888755


Q ss_pred             CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCC
Q 003813          645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGG  704 (793)
Q Consensus       645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~  704 (793)
                      ...+|.++.+|+.|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.-.|..+|+..
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~  466 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR  466 (873)
T ss_pred             chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence            55678888888888888888877778888877 788888877777777776655555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-40  Score=331.31  Aligned_cols=390  Identities=25%  Similarity=0.279  Sum_probs=305.9

Q ss_pred             ccEEEccCCCCCCCCCccCCCC--CCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813           64 LKELKLSFCKLHHFPPLSSANF--SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL  141 (793)
Q Consensus        64 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  141 (793)
                      -+.|+.+++.+..+....+.+.  +.-++||+++|.+..+.+..|.++++|+++++.+|.++. +|...+...+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEee
Confidence            4568888888877755444432  345669999999998888889999999999999999876 6776666777999999


Q ss_pred             cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEcc
Q 003813          142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLG  221 (793)
Q Consensus       142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  221 (793)
                      .+|.|+ .+....++.++.|+.|||+.|. ++......|..-                             .++++|+|+
T Consensus       133 ~~N~I~-sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~-----------------------------~ni~~L~La  181 (873)
T KOG4194|consen  133 RHNLIS-SVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAK-----------------------------VNIKKLNLA  181 (873)
T ss_pred             eccccc-cccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCC-----------------------------CCceEEeec
Confidence            999998 7777778899999999999985 332221222111                             578889999


Q ss_pred             CcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee
Q 003813          222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK  301 (793)
Q Consensus       222 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  301 (793)
                      +|.|+......|..+.+|..|.|+.|+++...+..|..++.|+.|+|..|+|. .+....|.++++|+.|.+..|.+...
T Consensus       182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccc
Confidence            99998888888999999999999999999888888999999999999999996 55566899999999999999999999


Q ss_pred             cCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCC
Q 003813          302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSP  381 (793)
Q Consensus       302 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  381 (793)
                      ..+.|..+.++++|+++.|++...-..|+.++++|+.|++|.|.|...-+. .|                          
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~W--------------------------  313 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SW--------------------------  313 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-hh--------------------------
Confidence            999999999999999999999988889999999999999999988653222 22                          


Q ss_pred             CCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCC
Q 003813          382 SMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG  461 (793)
Q Consensus       382 ~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  461 (793)
                                                     .++++|++|+|+.|+++...++.|..+..|++|+|++|.+...-..+|.
T Consensus       314 -------------------------------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  314 -------------------------------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             -------------------------------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence                                           2256677777777777766677777777777777777777766666777


Q ss_pred             CCCCccEEEccCCccccccC---ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCC
Q 003813          462 TLSSLMSLNLRNNRLSGIIP---TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS  538 (793)
Q Consensus       462 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  538 (793)
                      ++++|++|||++|.++..+.   ..|.++++|+.|++.+|++. .||...+.++..|+.|+|.+|.|..+.|.+|..+ .
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~  440 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E  440 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence            77777777777777765544   34667777777777777776 7777777777777777777777776777777766 6


Q ss_pred             cCEEEccc
Q 003813          539 LQILDVAY  546 (793)
Q Consensus       539 L~~L~Ls~  546 (793)
                      |+.|.+..
T Consensus       441 Lk~Lv~nS  448 (873)
T KOG4194|consen  441 LKELVMNS  448 (873)
T ss_pred             hhhhhhcc
Confidence            66665554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.4e-42  Score=330.75  Aligned_cols=265  Identities=22%  Similarity=0.333  Sum_probs=158.1

Q ss_pred             CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEcc
Q 003813           63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ  142 (793)
Q Consensus        63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  142 (793)
                      .++.|.+++|.+..+.+ .+.++..|.+|++++|++. ..|.+++.+..++.++.++|++.. +|..++.+.+|+.++.+
T Consensus        46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcc
Confidence            45556666666655554 4555566666666666665 455556666666666666666554 45555666666666666


Q ss_pred             CCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccC
Q 003813          143 SNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGS  222 (793)
Q Consensus       143 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  222 (793)
                      +|.+. .++.. ++.+..|+.++..+|+  ....|+.+.++.++..+++.+|.+....|..+. +     +.|++||...
T Consensus       123 ~n~~~-el~~~-i~~~~~l~dl~~~~N~--i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m-----~~L~~ld~~~  192 (565)
T KOG0472|consen  123 SNELK-ELPDS-IGRLLDLEDLDATNNQ--ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-M-----KRLKHLDCNS  192 (565)
T ss_pred             cccee-ecCch-HHHHhhhhhhhccccc--cccCchHHHHHHHHHHhhccccchhhCCHHHHH-H-----HHHHhcccch
Confidence            66665 44444 5556666666666554  234555556666666666666665554444444 3     5677777766


Q ss_pred             cccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeec
Q 003813          223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKI  302 (793)
Q Consensus       223 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  302 (793)
                      |.+ +.+|..++.+.+|+-|++..|++. ..| .|.+|..|++++++.|++. .+|.....+++++..||+..|++.. .
T Consensus       193 N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~  267 (565)
T KOG0472|consen  193 NLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-V  267 (565)
T ss_pred             hhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-C
Confidence            655 456666777777777777777776 455 6677777777777777765 5666555667777777777776642 2


Q ss_pred             CCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccc
Q 003813          303 NPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS  347 (793)
Q Consensus       303 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~  347 (793)
                      |.....+.+|+.|++++|.++ .+|..++++ +|+.|-+.+|.+.
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            233333444444444444444 445556666 6666666666653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.3e-42  Score=331.96  Aligned_cols=491  Identities=23%  Similarity=0.351  Sum_probs=263.5

Q ss_pred             CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813           12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL   91 (793)
Q Consensus        12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   91 (793)
                      ++.|++++|.++.+.++   +.++..|.+|++++|+++..|   .+++.+..++.|+.++|++..+|+ .+..+.+|+.+
T Consensus        47 l~~lils~N~l~~l~~d---l~nL~~l~vl~~~~n~l~~lp---~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l  119 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRED---LKNLACLTVLNVHDNKLSQLP---AAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKL  119 (565)
T ss_pred             hhhhhhccCchhhccHh---hhcccceeEEEeccchhhhCC---HHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhh
Confidence            45555555555444333   345555666666666655542   235555556666666666655554 45555566666


Q ss_pred             ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCC
Q 003813           92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDE  171 (793)
Q Consensus        92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~  171 (793)
                      +.++|.+. ..|++++.+..|..++..+|+++. .|+.+..+.+|..+++.+|++. ..|+..+ +++.|++|+...|  
T Consensus       120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N--  193 (565)
T KOG0472|consen  120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSN--  193 (565)
T ss_pred             hcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchh--
Confidence            66666655 445555566666666666666555 4455555556666666666655 4444422 3556666665555  


Q ss_pred             CCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC
Q 003813          172 LGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG  251 (793)
Q Consensus       172 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  251 (793)
                      .-+.+|+.++.+.+|..|++..|.+.. .| .|+.+     ..|++++++.|+|.....+....++++..||+.+|++. 
T Consensus       194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gc-----s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-  265 (565)
T KOG0472|consen  194 LLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGC-----SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-  265 (565)
T ss_pred             hhhcCChhhcchhhhHHHHhhhccccc-CC-CCCcc-----HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-
Confidence            445555556655555555555555543 22 22222     34555555555553322222335555555555555555 


Q ss_pred             CcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccc
Q 003813          252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQ  331 (793)
Q Consensus       252 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  331 (793)
                      ..|..+.-+++|++||+++|.+++ .|. .++++ .|+.|.+.+|++....                         ..+-
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is~-Lp~-sLgnl-hL~~L~leGNPlrTiR-------------------------r~ii  317 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDISS-LPY-SLGNL-HLKFLALEGNPLRTIR-------------------------REII  317 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCcccc-CCc-ccccc-eeeehhhcCCchHHHH-------------------------HHHH
Confidence            445555555555555555555542 232 34555 5555555555443211                         0000


Q ss_pred             cCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcc
Q 003813          332 SQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG  411 (793)
Q Consensus       332 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~  411 (793)
                      +.                ....+...+++         .+....+.-..      .....         .+..+.     
T Consensus       318 ~~----------------gT~~vLKyLrs---------~~~~dglS~se------~~~e~---------~~t~~~-----  352 (565)
T KOG0472|consen  318 SK----------------GTQEVLKYLRS---------KIKDDGLSQSE------GGTET---------AMTLPS-----  352 (565)
T ss_pred             cc----------------cHHHHHHHHHH---------hhccCCCCCCc------ccccc---------cCCCCC-----
Confidence            00                00001000000         00000000000      00000         000000     


Q ss_pred             cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCC---ccEEEccCCccccccCccccCCC
Q 003813          412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSS---LMSLNLRNNRLSGIIPTSFNNFT  488 (793)
Q Consensus       412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~  488 (793)
                                        +.. .....+.+.+.|++++-+++ .+|+.......   ....+++.|++. .+|..+..+.
T Consensus       353 ------------------~~~-~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lk  411 (565)
T KOG0472|consen  353 ------------------ESF-PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELK  411 (565)
T ss_pred             ------------------Ccc-cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHH
Confidence                              000 11122334555555555555 33433222222   556666666666 4555555544


Q ss_pred             CCC-EEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCcccc
Q 003813          489 ILE-ALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTD  567 (793)
Q Consensus       489 ~L~-~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~  567 (793)
                      .+. .+++++|.+. .+|..+. .+++|..|+|++|.+. .+|..++.+..||+||++.|++. .+|.++..+..+    
T Consensus       412 elvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l----  483 (565)
T KOG0472|consen  412 ELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL----  483 (565)
T ss_pred             HHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH----
Confidence            443 3445555553 5565555 5777777777777777 67777778888888888888876 677666554443    


Q ss_pred             CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCc
Q 003813          568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD  647 (793)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  647 (793)
                                                              +.+-.++|++....|..+.++.+|.+|||.+|.+. .+|.
T Consensus       484 ----------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  484 ----------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             ----------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence                                                    23344567777566666899999999999999998 8888


Q ss_pred             cccCcCCCCEEECCCCcCC
Q 003813          648 NIGVMRSIESLDFSANQLS  666 (793)
Q Consensus       648 ~l~~l~~L~~L~Ls~N~l~  666 (793)
                      .+++|++|++|++++|.+.
T Consensus       523 ~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  523 ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhccccceeEEEecCCccC
Confidence            8999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-38  Score=334.62  Aligned_cols=483  Identities=26%  Similarity=0.374  Sum_probs=309.6

Q ss_pred             EeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECc
Q 003813           15 LDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS   94 (793)
Q Consensus        15 L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   94 (793)
                      +|.+.+.++.+|..+  + .-..+..|++..|-+-..|  ...+.+.-+|+.|++++|.+...|. .+..+++|+.|+++
T Consensus         3 vd~s~~~l~~ip~~i--~-~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s   76 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQI--L-NNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLS   76 (1081)
T ss_pred             cccccccCcccchhh--c-cHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhcccc
Confidence            566666666555543  2 2233677777777666654  2234445557777777777766654 56666677777777


Q ss_pred             CccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC
Q 003813           95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG  174 (793)
Q Consensus        95 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~  174 (793)
                      .|.|. ..|.+..++.+|+++.|..|.+.. .|..+..+.+|++|++++|++. .+|.. +..++.+..+..++|. ...
T Consensus        77 ~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N~-~~~  151 (1081)
T KOG0618|consen   77 RNYIR-SVPSSCSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNNE-KIQ  151 (1081)
T ss_pred             hhhHh-hCchhhhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcch-hhh
Confidence            77776 456666777777777777766654 5666777777777777777766 66655 5666666666666652 110


Q ss_pred             CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcc
Q 003813          175 KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIP  254 (793)
Q Consensus       175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  254 (793)
                      .                            ++.      ..++.+++..|.+.+.++..+..++.  .|+|.+|.+. .  
T Consensus       152 ~----------------------------lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--  192 (1081)
T KOG0618|consen  152 R----------------------------LGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--  192 (1081)
T ss_pred             h----------------------------hcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence            0                            000      12444444444444444443433333  3555555443 1  


Q ss_pred             hhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCC
Q 003813          255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQK  334 (793)
Q Consensus       255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  334 (793)
                      ..+..+++|+.|....|++.. +.    -.-                                                +
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~-l~----~~g------------------------------------------------~  219 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSE-LE----ISG------------------------------------------------P  219 (1081)
T ss_pred             hhhhhccchhhhhhhhcccce-EE----ecC------------------------------------------------c
Confidence            123344444444444444431 10    011                                                2


Q ss_pred             CCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCC
Q 003813          335 KLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF  414 (793)
Q Consensus       335 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~  414 (793)
                      +++.|+.++|.++...+..                                ....++++|+++|++++. |++++    .
T Consensus       220 ~l~~L~a~~n~l~~~~~~p--------------------------------~p~nl~~~dis~n~l~~l-p~wi~----~  262 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHP--------------------------------VPLNLQYLDISHNNLSNL-PEWIG----A  262 (1081)
T ss_pred             chheeeeccCcceeecccc--------------------------------ccccceeeecchhhhhcc-hHHHH----h
Confidence            3333333333332111100                                133444555555555442 23333    3


Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCC-CCEE
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI-LEAL  493 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L  493 (793)
                      +.+|+.++..+|+++ .+|..+....+|+.|++..|.+. .+|....+.+.|++|+|..|++....+..+.-... |..|
T Consensus       263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l  340 (1081)
T KOG0618|consen  263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL  340 (1081)
T ss_pred             cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence            788889999999886 67777788888999999999988 56767777889999999999988554444444443 7788


Q ss_pred             eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCC
Q 003813          494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQS  572 (793)
Q Consensus       494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~  572 (793)
                      +.+.|++. ..|..-....+.|+.|.+.+|.++...-..+-+..+|++|+|++|++. .+|+ .+.++..          
T Consensus       341 n~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~----------  408 (1081)
T KOG0618|consen  341 NVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE----------  408 (1081)
T ss_pred             hhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHH----------
Confidence            88888887 666555556778999999999998776667788889999999999986 4453 3444433          


Q ss_pred             CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813          573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM  652 (793)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  652 (793)
                                                        |+.|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..+
T Consensus       409 ----------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  409 ----------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             ----------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence                                              478899999998 78899999999999999999998 777 78899


Q ss_pred             CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc
Q 003813          653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN  688 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  688 (793)
                      ++|+.+|+|.|+++...-..-..-+.|++||+++|.
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999999999999985443222222789999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-36  Score=322.68  Aligned_cols=495  Identities=25%  Similarity=0.320  Sum_probs=298.9

Q ss_pred             CCCCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc
Q 003813            2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS   81 (793)
Q Consensus         2 ip~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (793)
                      ||..+-.-..++.|+++.|-+...|  .++..+.-+|+.|++++|.+...|.   .+..+.+|+.|+++.|.|...+. .
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp~-s   86 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVPS-S   86 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCch-h
Confidence            5666666667899999998765444  5556777779999999999998643   57789999999999999999984 7


Q ss_pred             CCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCC
Q 003813           82 SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI  161 (793)
Q Consensus        82 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L  161 (793)
                      ..++.+|+++.|..|.+. ..|..+..+++|++|++++|.+.. +|..+..++.++.++.++|.....     ++... .
T Consensus        87 ~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~~-i  158 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQR-----LGQTS-I  158 (1081)
T ss_pred             hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhh-----hcccc-c
Confidence            889999999999999998 789999999999999999999976 788899999999999999932212     23333 7


Q ss_pred             cEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCE
Q 003813          162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF  241 (793)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  241 (793)
                      +.+++..|. +.+.++..+..+..  .+++.+|.+.                                ...+..+.+|+.
T Consensus       159 k~~~l~~n~-l~~~~~~~i~~l~~--~ldLr~N~~~--------------------------------~~dls~~~~l~~  203 (1081)
T KOG0618|consen  159 KKLDLRLNV-LGGSFLIDIYNLTH--QLDLRYNEME--------------------------------VLDLSNLANLEV  203 (1081)
T ss_pred             hhhhhhhhh-cccchhcchhhhhe--eeecccchhh--------------------------------hhhhhhccchhh
Confidence            777887776 66666655555544  4555555443                                111333444444


Q ss_pred             EeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCcc
Q 003813          242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCR  321 (793)
Q Consensus       242 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~  321 (793)
                      +....|++....    -.-++|+.|+.++|.++...+.   .--.+|++++++.|.                        
T Consensus       204 l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~------------------------  252 (1081)
T KOG0618|consen  204 LHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNN------------------------  252 (1081)
T ss_pred             hhhhhcccceEE----ecCcchheeeeccCcceeeccc---cccccceeeecchhh------------------------
Confidence            444444443211    0124455555555554411110   001122222222222                        


Q ss_pred             CCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813          322 LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS  401 (793)
Q Consensus       322 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  401 (793)
                      +. .+|.|+..+.+|+.++..+|+++. +|...+. ..+|+.|.+.+|.+.-..|.                        
T Consensus       253 l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~-~~~L~~l~~~~nel~yip~~------------------------  305 (1081)
T KOG0618|consen  253 LS-NLPEWIGACANLEALNANHNRLVA-LPLRISR-ITSLVSLSAAYNELEYIPPF------------------------  305 (1081)
T ss_pred             hh-cchHHHHhcccceEecccchhHHh-hHHHHhh-hhhHHHHHhhhhhhhhCCCc------------------------
Confidence            22 344566666666666666666632 3433332 23333344433333211111                        


Q ss_pred             ccccchhhcccCCCCCccEEEccCCcccccCCCCccCCC-CCCEEEccCCcccccCCC-CCCCCCCccEEEccCCccccc
Q 003813          402 GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP-RLRMLNLRNNNFTGSLPM-SIGTLSSLMSLNLRNNRLSGI  479 (793)
Q Consensus       402 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~  479 (793)
                                ....+.|+.|+|..|++....+..|.-.. .|+.|+.+.|++.. .|. .=..++.|+.|++.+|.++..
T Consensus       306 ----------le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  306 ----------LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             ----------ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCccccc
Confidence                      11145566666666666533222222222 25666666666652 221 111245567777777777665


Q ss_pred             cCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccc
Q 003813          480 IPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN  559 (793)
Q Consensus       480 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  559 (793)
                      .-..+.+..+|+.|+|++|++. ++|+....++..|++|+||+|+++ .+|..+..+..|++|...+|++.         
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~---------  443 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL---------  443 (1081)
T ss_pred             chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee---------
Confidence            5556666677777777777765 666666666666666666666666 55666666666666666666654         


Q ss_pred             cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC
Q 003813          560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN  639 (793)
Q Consensus       560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  639 (793)
                                                                                  ..| ++.+++.|+.+|+|.|
T Consensus       444 ------------------------------------------------------------~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  444 ------------------------------------------------------------SFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             ------------------------------------------------------------ech-hhhhcCcceEEecccc
Confidence                                                                        334 4555666666666666


Q ss_pred             ccccc-CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813          640 LFTGR-IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN  687 (793)
Q Consensus       640 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  687 (793)
                      +++.. +|..... ++|++|||++|.-....-..|..++++...++.-|
T Consensus       463 ~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  463 NLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            66522 2222222 56666666666643344455556666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.5e-33  Score=284.26  Aligned_cols=385  Identities=23%  Similarity=0.373  Sum_probs=237.1

Q ss_pred             CCCCcEEEcCCCCCCC-CCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCC
Q 003813          158 LTSIQTLLLSGNDELG-GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF  236 (793)
Q Consensus       158 l~~L~~L~L~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l  236 (793)
                      ++-.+-.++++|. ++ +..|.....++.++.|.+....+.. +|+.++.+     .+|++|.+++|++.. +-..+..+
T Consensus         6 LpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~l-----qkLEHLs~~HN~L~~-vhGELs~L   77 (1255)
T KOG0444|consen    6 LPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRL-----QKLEHLSMAHNQLIS-VHGELSDL   77 (1255)
T ss_pred             cceeecccccCCc-CCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHH-----hhhhhhhhhhhhhHh-hhhhhccc
Confidence            3445566677776 44 5566666666666666665555442 55555555     556666666665532 22234455


Q ss_pred             CCCCEEeCcCCcCC-CCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEE
Q 003813          237 KGLNFLDLSNTTMD-GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGL  315 (793)
Q Consensus       237 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  315 (793)
                      +.|+.+++..|++. .-+|..+..+.-|+.||||+|++. .+                                      
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev--------------------------------------  118 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV--------------------------------------  118 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc--------------------------------------
Confidence            55555555555542 133444555555555555555554 33                                      


Q ss_pred             EccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEc
Q 003813          316 GVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDL  395 (793)
Q Consensus       316 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~l  395 (793)
                                 |..+...+++-.|++|+|+|. .||..++..+..|-.||+|+|++...-|.+                 
T Consensus       119 -----------P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-----------------  169 (1255)
T KOG0444|consen  119 -----------PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI-----------------  169 (1255)
T ss_pred             -----------chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH-----------------
Confidence                       333444455555666666653 366666666666666666666553222211                 


Q ss_pred             ccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccc-ccCCCCCCCCCCccEEEccCC
Q 003813          396 SNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT-GSLPMSIGTLSSLMSLNLRNN  474 (793)
Q Consensus       396 s~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n  474 (793)
                                       ..+..|++|+|++|.+....-..+-.+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|
T Consensus       170 -----------------RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  170 -----------------RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             -----------------HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence                             11456666667666554333334445666777777766543 356777777777777777777


Q ss_pred             ccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-ccc
Q 003813          475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTI  553 (793)
Q Consensus       475 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~  553 (793)
                      .+. +.|+++-++++|+.|+|++|+|+ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-+
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence            777 66777777777777788877776 5554444 3567788888888887 67888888888888888888774 246


Q ss_pred             CccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCce
Q 003813          554 PRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQS  633 (793)
Q Consensus       554 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  633 (793)
                      |..++.+.+|                                            +.+..++|.+. ..|+.+..+..|+.
T Consensus       309 PSGIGKL~~L--------------------------------------------evf~aanN~LE-lVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  309 PSGIGKLIQL--------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQK  343 (1255)
T ss_pred             ccchhhhhhh--------------------------------------------HHHHhhccccc-cCchhhhhhHHHHH
Confidence            6666666655                                            34555666665 77778888888888


Q ss_pred             eeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813          634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS  685 (793)
Q Consensus       634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  685 (793)
                      |.|++|++. .+|+++.-++.|+.||+..|.-....|.-=..-++|+.-++.
T Consensus       344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            888888877 778888888888888888876553333322222455554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.9e-33  Score=285.62  Aligned_cols=374  Identities=25%  Similarity=0.381  Sum_probs=283.2

Q ss_pred             CCCCCCCEEECcCccCC-CcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCC
Q 003813           83 ANFSSLTTLDLSENEFQ-GQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI  161 (793)
Q Consensus        83 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L  161 (793)
                      +-++-.+-.|+++|.++ +..|.....+++++.|.|...++.. +|+.++.+.+|++|.+++|++. .+... ++.++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence            34556677888888888 4578888888888888888887765 7888888888888888888887 55444 7788888


Q ss_pred             cEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCE
Q 003813          162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF  241 (793)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  241 (793)
                      +.+.+..|+.-...+|..+..+..|+.|+++.|++.. .|..+...     .++-.|+|++|+|..+....+.+++.|-.
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~A-----Kn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYA-----KNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhh-----cCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            8888888885567788888888888888888888764 56666665     77888888888886555555678888888


Q ss_pred             EeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCcc
Q 003813          242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCR  321 (793)
Q Consensus       242 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~  321 (793)
                      ||||+|++. .+|..+..+..|++|+|++|.+.- ..-..+..+++|+.|.+++.+-+                      
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRT----------------------  210 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRT----------------------  210 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccch----------------------
Confidence            888888887 667778888888888888887652 21113344555666666654432                      


Q ss_pred             CCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813          322 LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS  401 (793)
Q Consensus       322 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  401 (793)
                       ...+|..+..+.+|..+|+|.|.+. .+|..++. +++|+.|++|+|+++..--                         
T Consensus       211 -l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~~-------------------------  262 (1255)
T KOG0444|consen  211 -LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELNM-------------------------  262 (1255)
T ss_pred             -hhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeeec-------------------------
Confidence             1255666677777777777777764 35555443 5666666666666542111                         


Q ss_pred             ccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccc-ccCCCCCCCCCCccEEEccCCcccccc
Q 003813          402 GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT-GSLPMSIGTLSSLMSLNLRNNRLSGII  480 (793)
Q Consensus       402 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~  480 (793)
                               ..+...+|++|++++|+++ ..|+++++++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..
T Consensus       263 ---------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV  331 (1255)
T KOG0444|consen  263 ---------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV  331 (1255)
T ss_pred             ---------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence                     1112467999999999998 78999999999999999999887 347888999999999999999988 88


Q ss_pred             CccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC
Q 003813          481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP  530 (793)
Q Consensus       481 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  530 (793)
                      |+.++.|..|+.|.|+.|++. .+|+.+. -++.|+.||++.|.-....|
T Consensus       332 PEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             chhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence            999999999999999999998 8999887 68999999999998663333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=3.8e-27  Score=229.34  Aligned_cols=225  Identities=22%  Similarity=0.269  Sum_probs=142.7

Q ss_pred             cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCC
Q 003813          412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE  491 (793)
Q Consensus       412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  491 (793)
                      +..+++|++|+|++|+++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            44578899999999999988889999999999999999999877777888899999999999999988899999999999


Q ss_pred             EEeCCCCcccc-cCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc---ccCccccccccCcccc
Q 003813          492 ALDMGENELVG-NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG---TIPRCINNFSAMATTD  567 (793)
Q Consensus       492 ~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~~~  567 (793)
                      +|.+-.|++.- .--.|+.+.        |+.+...|..| . +....++.++++.+.+..   .-|...+..+      
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~-C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~------  413 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPR-C-QSPGFVRQIPISDVAFGDFRCGGPEELGCLT------  413 (498)
T ss_pred             eeehccCcccCccchHHHHHH--------HhhCCCCCCCC-C-CCCchhccccchhccccccccCCccccCCCC------
Confidence            99988887641 112333322        22233222222 1 223356666666665531   1111111000      


Q ss_pred             CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCc
Q 003813          568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD  647 (793)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  647 (793)
                      ...++..        ....+                    +...-|+..+. .+|..+-  ..-.+|++.+|.++ .+|+
T Consensus       414 s~~cP~~--------c~c~~--------------------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~  461 (498)
T KOG4237|consen  414 SSPCPPP--------CTCLD--------------------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPD  461 (498)
T ss_pred             CCCCCCC--------cchhh--------------------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCH
Confidence            0000000        00000                    11223333333 3333221  23457788888887 6776


Q ss_pred             cccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813          648 NIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN  687 (793)
Q Consensus       648 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  687 (793)
                      +  .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus       462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            6  56777 7888888887666677888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-26  Score=226.05  Aligned_cols=258  Identities=22%  Similarity=0.216  Sum_probs=174.1

Q ss_pred             CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcC-CcCccCCcccccCCCCCCEEEc
Q 003813           63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF-NQFNSVVPGWLSKLNDLEFLSL  141 (793)
Q Consensus        63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L  141 (793)
                      .-.+++|..|+|+.+|+.+|+.+++||.||||+|.|+.+.|++|.++++|..|-+-+ |+|+.+..+.|+++..|+-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            455666777777777777777777777777777777766667777776666555444 6666666666667777777776


Q ss_pred             cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc-----------------------
Q 003813          142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ-----------------------  198 (793)
Q Consensus       142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------------  198 (793)
                      .-|++. -++..+|..+++|..|.+.+|. +...--..+..+..++.+.+..|.+..                       
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            666666 5555556667766666666664 332222355555556655555444110                       


Q ss_pred             cchhHHhhh-----c----cccCCCccEEEccCcccccccc-cccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813          199 DISEILGIF-----S----ACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL  268 (793)
Q Consensus       199 ~~~~~~~~~-----~----~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  268 (793)
                      .+|..+..-     .    .+....+..--.+.+...+..| ..|..+++|++|++++|+++++-+.+|.+...+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            111111000     0    0000111111122332333333 46889999999999999999999999999999999999


Q ss_pred             cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813          269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG  323 (793)
Q Consensus       269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~  323 (793)
                      ..|++. .+....|.++..|++|++.+|+++...+..|.+...|.+|.+-.|.+.
T Consensus       306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999997 677779999999999999999999999999999999999999887764

>PLN03210 Resistant to P

Probab=99.90  E-value=2.9e-22  Score=241.84  Aligned_cols=340  Identities=19%  Similarity=0.250  Sum_probs=179.5

Q ss_pred             CccCCCCCCCCEEECcCccC------CCcccccccCCC-CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccC
Q 003813           79 PLSSANFSSLTTLDLSENEF------QGQIPSRLGNLT-SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS  151 (793)
Q Consensus        79 ~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~  151 (793)
                      +.+|.++++|+.|.+..+..      ...+|..|..++ +|+.|.+.++.+.. +|..| ...+|++|++.+|.+. .++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccc
Confidence            34566666666666654421      223445555543 46666666666544 45444 3466666666666665 454


Q ss_pred             hhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccccccc
Q 003813          152 SLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTN  231 (793)
Q Consensus       152 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  231 (793)
                      .. +..+++|+.|+++++. ....+| .+..+++|+.|++++|.....+|..+..+     ++|+.|++++|...+.+|.
T Consensus       628 ~~-~~~l~~Lk~L~Ls~~~-~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L-----~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        628 DG-VHSLTGLRNIDLRGSK-NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYL-----NKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cc-cccCCCCCEEECCCCC-CcCcCC-ccccCCcccEEEecCCCCccccchhhhcc-----CCCCEEeCCCCCCcCccCC
Confidence            44 5566666666666654 223334 35556666666666655555566665555     6677777766654455554


Q ss_pred             ccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee-------cCC
Q 003813          232 QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK-------INP  304 (793)
Q Consensus       232 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~  304 (793)
                      .+ ++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|. . ..+++|++|.+.++.....       .+.
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhhccccccccchh
Confidence            44 5667777777776554444432   346677777777664 4443 1 1455666666655321110       011


Q ss_pred             CCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCC
Q 003813          305 NWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP  384 (793)
Q Consensus       305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  384 (793)
                      .+..+++|+.|++++|.....+|.++.++++|+.|++++|...+.+|...  .+++|+.|++++|.....+|        
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p--------  842 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFP--------  842 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccc--------
Confidence            11223456666666665555556666666666666666554333344332  23444444444433221111        


Q ss_pred             ccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC
Q 003813          385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS  464 (793)
Q Consensus       385 ~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  464 (793)
                                           .       ..++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..++
T Consensus       843 ---------------------~-------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        843 ---------------------D-------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             ---------------------c-------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence                                 1       0244555555555555 3455555556666666655332223444455555


Q ss_pred             CccEEEccCCc
Q 003813          465 SLMSLNLRNNR  475 (793)
Q Consensus       465 ~L~~L~L~~n~  475 (793)
                      +|+.+++++|.
T Consensus       894 ~L~~L~l~~C~  904 (1153)
T PLN03210        894 HLETVDFSDCG  904 (1153)
T ss_pred             CCCeeecCCCc
Confidence            55555555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=5.7e-22  Score=239.31  Aligned_cols=338  Identities=20%  Similarity=0.248  Sum_probs=152.6

Q ss_pred             cccCCCCCCCEEeCcCCcC------CCCcchhhcCCC-CCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecC
Q 003813          231 NQLGRFKGLNFLDLSNTTM------DGSIPLSLGQIA-NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN  303 (793)
Q Consensus       231 ~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  303 (793)
                      .+|..+++|+.|.+..+..      ...+|..+..++ +|+.|++.++.+. .+|. .| ...+|+.|++.+|.+.. .+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-LW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-cc
Confidence            3455566666666644321      223344444443 4666666665554 3443 22 34555555555555432 22


Q ss_pred             CCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCC
Q 003813          304 PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM  383 (793)
Q Consensus       304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  383 (793)
                      ..+..+++|+.++++++.....+|. +..+++|++|++++|.....+|..+ ..+++|+.|++++|.....+|       
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp-------  698 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILP-------  698 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccC-------
Confidence            3334444555555554443333332 3344444444444443333333322 123333333333332222222       


Q ss_pred             CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCC
Q 003813          384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTL  463 (793)
Q Consensus       384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  463 (793)
                                            ..+     .+++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+ .+
T Consensus       699 ----------------------~~i-----~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l  746 (1153)
T PLN03210        699 ----------------------TGI-----NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RL  746 (1153)
T ss_pred             ----------------------CcC-----CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cc
Confidence                                  110     1345555555555443333332   234555555555554 344333 34


Q ss_pred             CCccEEEccCCcccc-------ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813          464 SSLMSLNLRNNRLSG-------IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL  536 (793)
Q Consensus       464 ~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  536 (793)
                      ++|++|++.++....       ..+..+..+++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+
T Consensus       747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L  824 (1153)
T PLN03210        747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NL  824 (1153)
T ss_pred             cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence            555555554432111       1111122234455555555544444554443 45555555555544333444333 34


Q ss_pred             CCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc
Q 003813          537 ASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN  616 (793)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  616 (793)
                      ++|+.|++++|.....+|..                                               ...++.|+|++|.
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~-----------------------------------------------~~nL~~L~Ls~n~  857 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDI-----------------------------------------------STNISDLNLSRTG  857 (1153)
T ss_pred             cccCEEECCCCCcccccccc-----------------------------------------------ccccCEeECCCCC
Confidence            45555555544332222211                                               1223556666666


Q ss_pred             ceeeCccccccccCCceeeccC-CcccccCCccccCcCCCCEEECCCCc
Q 003813          617 FSGEVPVEVTNLQGLQSLNFSY-NLFTGRIPDNIGVMRSIESLDFSANQ  664 (793)
Q Consensus       617 l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~  664 (793)
                      ++ .+|..+..+++|+.|++++ |++. .+|..+..+++|+.+++++|.
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            65 4555566666666666665 3333 455555566666666666553

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.6e-21  Score=217.38  Aligned_cols=261  Identities=24%  Similarity=0.280  Sum_probs=169.5

Q ss_pred             CeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCC
Q 003813          337 NDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK  416 (793)
Q Consensus       337 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~  416 (793)
                      ..|+++.+.++ .+|..+.   .+++.|++++|+++. +|.        ....++.|++++|+++. +|.       .++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--------lp~~Lk~LdLs~N~Lts-LP~-------lp~  262 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--------LPPELRTLEVSGNQLTS-LPV-------LPP  262 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--------CCCCCcEEEecCCccCc-ccC-------ccc
Confidence            34455555444 2444332   244555555555442 221        13445556666665553 232       135


Q ss_pred             CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813          417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG  496 (793)
Q Consensus       417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  496 (793)
                      +|+.|++++|.++. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|+++++ |..   ..+|+.|+++
T Consensus       263 sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls  330 (788)
T PRK15387        263 GLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAY  330 (788)
T ss_pred             ccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---cccccccccc
Confidence            67778888887763 3432   246777888888877 34432   46788888888887753 332   2457777888


Q ss_pred             CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                      +|.++ .+|..    ..+|++|+|++|+++ .+|..   ..+|+.|++++|+++ .+|...                   
T Consensus       331 ~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~-------------------  381 (788)
T PRK15387        331 NNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP-------------------  381 (788)
T ss_pred             cCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcccc-------------------
Confidence            88876 56642    246788888888887 35532   346777788888776 344321                   


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE  656 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  656 (793)
                                                  ..|+.|++++|+|++ +|..   .++|+.|++++|+++ .+|...   .+|+
T Consensus       382 ----------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~  425 (788)
T PRK15387        382 ----------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLL  425 (788)
T ss_pred             ----------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhh
Confidence                                        235788999999884 5643   357889999999998 577643   4678


Q ss_pred             EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      .|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|..
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            8999999998 68888899999999999999999887753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.8e-21  Score=215.56  Aligned_cols=185  Identities=26%  Similarity=0.369  Sum_probs=111.4

Q ss_pred             CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813          417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG  496 (793)
Q Consensus       417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  496 (793)
                      +|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+|+.|+|+
T Consensus       283 ~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence            34455555555542 2321   2456666666666653 2321   1345556666666653 3321   2356666666


Q ss_pred             CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                      +|+++ .+|..    .++|+.|++++|+++ .+|..   ..+|+.|++++|++++ +|...                   
T Consensus       351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l~-------------------  401 (788)
T PRK15387        351 DNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVLP-------------------  401 (788)
T ss_pred             CCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCcc-------------------
Confidence            66666 45532    245666677777766 34532   2457777777777763 44211                   


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE  656 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  656 (793)
                                                  +.|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|+.+.++++|+
T Consensus       402 ----------------------------s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        402 ----------------------------SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             ----------------------------cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence                                        12466778888777 35643   245777888888888 7888888888888


Q ss_pred             EEECCCCcCCCCCcccccC
Q 003813          657 SLDFSANQLSGYIPQSMSN  675 (793)
Q Consensus       657 ~L~Ls~N~l~~~~p~~l~~  675 (793)
                      .|+|++|++++.+|..+..
T Consensus       449 ~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        449 TVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             eEECCCCCCCchHHHHHHH
Confidence            8888888888887777643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.9e-19  Score=201.07  Aligned_cols=205  Identities=25%  Similarity=0.404  Sum_probs=126.5

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ++|+.|++++|+++ .+|..+.  ++|+.|+|++|+++ .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence            45677777777666 3444432  35677777777766 4555443  467777777777763 444432  46777777


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      ++|+++ .+|..+.   ++|+.|++++|+++ .+|..+.  ++|+.|++++|.+++ +|..+                  
T Consensus       291 s~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------------------  344 (754)
T PRK15370        291 YDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL------------------  344 (754)
T ss_pred             CCCccc-cCcccch---hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh------------------
Confidence            777776 4554432   35667777777776 3444332  567777777777653 44322                  


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI  655 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  655 (793)
                                                  .+.|+.|++++|+|+ .+|..+.  ++|++|+|++|+++ .+|..+.  ..|
T Consensus       345 ----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        345 ----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             ----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence                                        123567777777776 4565543  57777788777777 5666554  357


Q ss_pred             CEEECCCCcCCCCCccc----ccCCCCCCeEEcccCccc
Q 003813          656 ESLDFSANQLSGYIPQS----MSNLSFLNYLNLSNNNLN  690 (793)
Q Consensus       656 ~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~  690 (793)
                      +.|++++|+++ .+|..    +..++.+..+++.+|+++
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777877777 44443    333466777788888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.3e-19  Score=198.99  Aligned_cols=14  Identities=21%  Similarity=0.344  Sum_probs=6.5

Q ss_pred             cCCceeeccCCccc
Q 003813          629 QGLQSLNFSYNLFT  642 (793)
Q Consensus       629 ~~L~~L~Ls~N~l~  642 (793)
                      +.+..|++.+|.++
T Consensus       415 ~~l~~L~L~~Npls  428 (754)
T PRK15370        415 PQPTRIIVEYNPFS  428 (754)
T ss_pred             CCccEEEeeCCCcc
Confidence            34444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2e-19  Score=189.30  Aligned_cols=215  Identities=21%  Similarity=0.246  Sum_probs=110.5

Q ss_pred             CccCCCCCCEEEccCCcccccCCCCCCCCCC---ccEEEccCCcccc----ccCccccCC-CCCCEEeCCCCcccccCch
Q 003813          435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSS---LMSLNLRNNRLSG----IIPTSFNNF-TILEALDMGENELVGNIPT  506 (793)
Q Consensus       435 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~p~  506 (793)
                      .+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++....
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            3444555666666655554333333333333   6666666665552    122233344 5666666666665532211


Q ss_pred             hH---HhhcccCcEEEccCcccccc----CCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813          507 WM---GERFSRLIILNLRSNKFHGD----FPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       507 ~~---~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      .+   +..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.....+.                     
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------  214 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA---------------------  214 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH---------------------
Confidence            11   11344566666666666531    222344445666666666665422111110                     


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccc-----cccCCceeeccCCccc----ccCCcccc
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT-----NLQGLQSLNFSYNLFT----GRIPDNIG  650 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~l~  650 (793)
                                         .....++.|+.|++++|.+++.....+.     ..+.|++|++++|.++    ..+.+.+.
T Consensus       215 -------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~  275 (319)
T cd00116         215 -------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA  275 (319)
T ss_pred             -------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence                               0111233456666666666542222222     1367777777777775    22334555


Q ss_pred             CcCCCCEEECCCCcCCCC----CcccccCC-CCCCeEEcccCcc
Q 003813          651 VMRSIESLDFSANQLSGY----IPQSMSNL-SFLNYLNLSNNNL  689 (793)
Q Consensus       651 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  689 (793)
                      .+++|+.+++++|.++..    ....+... +.|+++|+.+|++
T Consensus       276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            567777777777777744    33344444 5677777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.9e-18  Score=180.53  Aligned_cols=156  Identities=28%  Similarity=0.289  Sum_probs=79.7

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCCCCC------CccCCCC
Q 003813           14 YLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLHHFP------PLSSANF   85 (793)
Q Consensus        14 ~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l   85 (793)
                      .|+|..+.++. .+....+..+.+|++|+++++.++..  ......+...+++++|+++++.+...+      +..+..+
T Consensus         2 ~l~L~~~~l~~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKT-ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccc-cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            35666555531 11223355666677777777776542  112334456666777777776665311      1234455


Q ss_pred             CCCCEEECcCccCCCcccccccCCCC---CCEEeCcCCcCccC----CcccccCC-CCCCEEEccCCccccccCh---hh
Q 003813           86 SSLTTLDLSENEFQGQIPSRLGNLTS---LKYLDLSFNQFNSV----VPGWLSKL-NDLEFLSLQSNRLQGNISS---LG  154 (793)
Q Consensus        86 ~~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~i~~---~~  154 (793)
                      ++|+.|++++|.+.+..+..+..+.+   |++|++++|++.+.    +...+..+ ++|++|++++|.+++....   ..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            66666666666665444444444433   66666666655421    12223344 5566666666655521110   11


Q ss_pred             hcCCCCCcEEEcCCCC
Q 003813          155 LENLTSIQTLLLSGND  170 (793)
Q Consensus       155 ~~~l~~L~~L~L~~n~  170 (793)
                      +..+++|++|++++|.
T Consensus       161 ~~~~~~L~~L~l~~n~  176 (319)
T cd00116         161 LRANRDLKELNLANNG  176 (319)
T ss_pred             HHhCCCcCEEECcCCC
Confidence            3444455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.2e-19  Score=154.11  Aligned_cols=181  Identities=26%  Similarity=0.529  Sum_probs=118.4

Q ss_pred             CCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEE
Q 003813          463 LSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL  542 (793)
Q Consensus       463 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  542 (793)
                      +...+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|..+. ++++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            344445555555555 33344455555555555555554 5555555 4666666666666666 667777777777777


Q ss_pred             EcccCcccc-ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeC
Q 003813          543 DVAYNNLSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV  621 (793)
Q Consensus       543 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  621 (793)
                      ||.+|++.. .+|..|..++.                                            |+.|+|++|.+. .+
T Consensus       108 dltynnl~e~~lpgnff~m~t--------------------------------------------lralyl~dndfe-~l  142 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTT--------------------------------------------LRALYLGDNDFE-IL  142 (264)
T ss_pred             hccccccccccCCcchhHHHH--------------------------------------------HHHHHhcCCCcc-cC
Confidence            777777653 34544433333                                            355677777776 77


Q ss_pred             ccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCC---CCeEEcccCcccccCC
Q 003813          622 PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSF---LNYLNLSNNNLNGEIP  694 (793)
Q Consensus       622 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~g~ip  694 (793)
                      |..++++++|+.|.+..|.+- ..|.+++.++.|+.|++.+|+++ .+|+.++++.-   =+.+-+.+|++--+|-
T Consensus       143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            888888888888888888888 78888888888888888888888 66666665532   2345566777765554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.7e-19  Score=152.58  Aligned_cols=184  Identities=30%  Similarity=0.458  Sum_probs=109.1

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +..++.|.|++|+++ .+|..+..+.+|+.|++++|+++ ..|..+..+++|+.|+++-|++. +.|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            345555556666665 44445555566666666666665 45555555666666666655555 4555555556666666


Q ss_pred             CCCCcccc-cCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813          495 MGENELVG-NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN  573 (793)
Q Consensus       495 L~~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  573 (793)
                      +.+|.+.. .+|..+| .++.|+.|+|++|.+. .+|..++++++|+.|.+..|                          
T Consensus       109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn--------------------------  160 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN--------------------------  160 (264)
T ss_pred             ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC--------------------------
Confidence            55555542 2344444 3445555555555554 44445555555555544444                          


Q ss_pred             ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813          574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR  653 (793)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  653 (793)
                                                                .+. ..|.+++.++.|++|.+.+|+++ .+|.+++++.
T Consensus       161 ------------------------------------------dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  161 ------------------------------------------DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             ------------------------------------------chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence                                                      444 67888888999999999999999 7777777653


Q ss_pred             C---CCEEECCCCcCCCCCcccc
Q 003813          654 S---IESLDFSANQLSGYIPQSM  673 (793)
Q Consensus       654 ~---L~~L~Ls~N~l~~~~p~~l  673 (793)
                      -   =+.+.+.+|.....|.+.|
T Consensus       197 l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  197 LVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             hhhhHHHHhhhhCCCCChHHHHH
Confidence            2   2456666777665554443

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=5.2e-15  Score=166.71  Aligned_cols=116  Identities=36%  Similarity=0.679  Sum_probs=102.3

Q ss_pred             ceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813          606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS  685 (793)
Q Consensus       606 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  685 (793)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++||++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCCc--cCCcCCccccCC-CccCCCC-CCCC
Q 003813          686 NNNLNGEIPSSTQ--LQSFGGSSFADN-DLCGAPL-PNCT  721 (793)
Q Consensus       686 ~N~l~g~ip~~~~--~~~~~~~~~~~n-~l~~~~~-~~c~  721 (793)
                      +|+++|.+|....  +.......+.+| .+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997622  222334567888 8998653 3563

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.5e-14  Score=148.66  Aligned_cols=196  Identities=26%  Similarity=0.472  Sum_probs=152.7

Q ss_pred             CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcE
Q 003813          438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLII  517 (793)
Q Consensus       438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~  517 (793)
                      .+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|+++|++.|+++ .+|..++ .++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-cee
Confidence            3445567888889888 78888888888888889988888 67888888999999999999988 8888887 454 889


Q ss_pred             EEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccch
Q 003813          518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL  597 (793)
Q Consensus       518 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (793)
                      |.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|                                  
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------  191 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------  191 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence            999999988 77888888888888999888886 566666665554                                  


Q ss_pred             hhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc---
Q 003813          598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS---  674 (793)
Q Consensus       598 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---  674 (793)
                                +.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. ..|..+.   
T Consensus       192 ----------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG  257 (722)
T KOG0532|consen  192 ----------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG  257 (722)
T ss_pred             ----------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence                      55666777776 567777744 4788888888888 88888888888888888888887 5555442   


Q ss_pred             CCCCCCeEEcccCc
Q 003813          675 NLSFLNYLNLSNNN  688 (793)
Q Consensus       675 ~l~~L~~L~ls~N~  688 (793)
                      ...-.++|+..-++
T Consensus       258 kVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  258 KVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeeeecchhcc
Confidence            33446777777664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=1.2e-14  Score=149.41  Aligned_cols=195  Identities=29%  Similarity=0.439  Sum_probs=161.9

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +..-...|++.|++. .+|..++.+..|+.+.|.+|.+. .+|.++.++..|+++||+.|+++ ..|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344567788888888 67888888888999999999998 78888999999999999999998 6777777776 89999


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND  574 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  574 (793)
                      +++|+++ .+|..++ ....|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..+..|+             
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            9999997 8999888 7889999999999998 78888999999999999999987 5565544332             


Q ss_pred             cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC---
Q 003813          575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV---  651 (793)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---  651 (793)
                                                      |..||+|+|+++ .+|.+|.+|+.|++|-|.+|.++ ..|..+..   
T Consensus       213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence                                            478999999999 89999999999999999999999 77765543   


Q ss_pred             cCCCCEEECCCCc
Q 003813          652 MRSIESLDFSANQ  664 (793)
Q Consensus       652 l~~L~~L~Ls~N~  664 (793)
                      .---++|+..-++
T Consensus       259 VHIFKyL~~qA~q  271 (722)
T KOG0532|consen  259 VHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeeecchhcc
Confidence            2334667777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=4.1e-12  Score=137.49  Aligned_cols=123  Identities=32%  Similarity=0.541  Sum_probs=71.2

Q ss_pred             EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC-CccEEEccCCccccccCccccCCCCCCEEeCCCC
Q 003813          420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS-SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN  498 (793)
Q Consensus       420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  498 (793)
                      .+++..|.+...+ ......+.++.|++.+|.++ .++....... +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            4666666653222 22333456677777777776 3444444443 67777777777663 3345566667777777777


Q ss_pred             cccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813          499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN  548 (793)
Q Consensus       499 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  548 (793)
                      +++ .+|.... ..+.|+.|++++|++. .+|.....+..|+++.+++|+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            666 5555443 3566666666666666 455444444456666666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=5.4e-12  Score=136.61  Aligned_cols=199  Identities=30%  Similarity=0.497  Sum_probs=127.8

Q ss_pred             CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCC-CCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813          443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT-ILEALDMGENELVGNIPTWMGERFSRLIILNLR  521 (793)
Q Consensus       443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  521 (793)
                      ..++++.|.+... ...+...+.++.|++.+|.++. ++......+ +|+.|++++|.+. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            3567777766422 2233445667777777777774 344444453 7777777777776 6655555 57777777777


Q ss_pred             CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813          522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK  601 (793)
Q Consensus       522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (793)
                      +|++. .+|...+.++.|+.|++++|++. .+|..+...                                         
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-----------------------------------------  208 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-----------------------------------------  208 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh-----------------------------------------
Confidence            77777 45555446777777777777776 444432221                                         


Q ss_pred             hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCe
Q 003813          602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY  681 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  681 (793)
                         ..|+++++++|.+. .++..+.+++.+..|.+++|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.
T Consensus       209 ---~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~  281 (394)
T COG4886         209 ---SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRE  281 (394)
T ss_pred             ---hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCE
Confidence               22356667777544 45556677777777777777776 4466677777777777777777733 33 677777777


Q ss_pred             EEcccCcccccCCC
Q 003813          682 LNLSNNNLNGEIPS  695 (793)
Q Consensus       682 L~ls~N~l~g~ip~  695 (793)
                      ||+++|.++...|.
T Consensus       282 L~~s~n~~~~~~~~  295 (394)
T COG4886         282 LDLSGNSLSNALPL  295 (394)
T ss_pred             EeccCccccccchh
Confidence            77777777766554

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=1.1e-11  Score=139.81  Aligned_cols=114  Identities=28%  Similarity=0.535  Sum_probs=100.3

Q ss_pred             CcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcc
Q 003813          538 SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF  617 (793)
Q Consensus       538 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  617 (793)
                      .++.|+|++|.+.|.+|..+.+++.|                                            +.|+|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L--------------------------------------------~~L~Ls~N~l  454 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHL--------------------------------------------QSINLSGNSI  454 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCC--------------------------------------------CEEECCCCcc
Confidence            37788888888888888877766655                                            7889999999


Q ss_pred             eeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCC-CCCCeEEcccCcccccCCC
Q 003813          618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       618 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~  695 (793)
                      +|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..+++++|+..|.+|.
T Consensus       455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999988764 4678999999998776663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=8.3e-12  Score=114.59  Aligned_cols=130  Identities=26%  Similarity=0.291  Sum_probs=47.4

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhC-CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccc-cCC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNL  109 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l  109 (793)
                      +.+...+++|+|++|.|+.++.    ++ .+.+|+.|++++|.|+.+.  .+..+++|++|++++|.|+.. ...+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNL   87 (175)
T ss_dssp             ---------------------S------TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-
T ss_pred             cccccccccccccccccccccc----hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhC
Confidence            4556678888888888887643    33 4678888888888888876  477788888888888888843 3334 357


Q ss_pred             CCCCEEeCcCCcCccCC-cccccCCCCCCEEEccCCcccccc--ChhhhcCCCCCcEEEcCC
Q 003813          110 TSLKYLDLSFNQFNSVV-PGWLSKLNDLEFLSLQSNRLQGNI--SSLGLENLTSIQTLLLSG  168 (793)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~L~~  168 (793)
                      ++|++|++++|+|.... -..+..+++|++|++.+|+++..-  ....+..+|+|+.||-..
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            88888888888886632 244567888888888888876321  122356777777776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=2e-12  Score=125.83  Aligned_cols=142  Identities=21%  Similarity=0.285  Sum_probs=65.7

Q ss_pred             CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc----CCCCccCCCCCCEEEccCCcccccCCCCCCCC
Q 003813          388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTL  463 (793)
Q Consensus       388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  463 (793)
                      ..++++....|++.......+...++..+.|+.+.++.|.|...    ....|..|++|++|||.+|-++..-..     
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-----  231 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-----  231 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-----
Confidence            34455555555554444334444444455555555555544311    122344455555555555544411100     


Q ss_pred             CCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCch----hHHhhcccCcEEEccCcccccc----CCccccC
Q 003813          464 SSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPT----WMGERFSRLIILNLRSNKFHGD----FPIQLCR  535 (793)
Q Consensus       464 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~  535 (793)
                                     .+...+..+++|+.|++++|.+...-..    .+....++|++|.+.+|.++..    +...+..
T Consensus       232 ---------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  232 ---------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             ---------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence                           1112333344455555555544322211    1222345566666666665421    1223444


Q ss_pred             CCCcCEEEcccCcc
Q 003813          536 LASLQILDVAYNNL  549 (793)
Q Consensus       536 l~~L~~L~Ls~N~l  549 (793)
                      .+.|..|+|++|++
T Consensus       297 k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRL  310 (382)
T ss_pred             chhhHHhcCCcccc
Confidence            66777777777777

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=6.1e-12  Score=125.84  Aligned_cols=219  Identities=21%  Similarity=0.211  Sum_probs=109.2

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc-CCCC
Q 003813            7 GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS-SANF   85 (793)
Q Consensus         7 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l   85 (793)
                      .+++.|+...|.++.+...+.. +....|++++.|||+.|-+............+|+|+.|+++.|++.....+. -..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3455566666665554332221 2244566666666666666655444444456666666666666654433211 1234


Q ss_pred             CCCCEEECcCccCCCcc-cccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccC-hhhhcCCCCCcE
Q 003813           86 SSLTTLDLSENEFQGQI-PSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS-SLGLENLTSIQT  163 (793)
Q Consensus        86 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~-~~~~~~l~~L~~  163 (793)
                      ++|+.|.|++|.++... -.....+|+|+.|+|.+|...........-+..|++|||++|++. ..+ ....+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            56666666666655221 122344556666666666422222222334555666666666554 222 111445555555


Q ss_pred             EEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccc-cccccCCCCCCCEE
Q 003813          164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH-MTNQLGRFKGLNFL  242 (793)
Q Consensus       164 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L  242 (793)
                      |+++.+..-+-..|+.                   ..-.....     +++|++|++..|++... .-..+..+++|+.|
T Consensus       276 Lnls~tgi~si~~~d~-------------------~s~~kt~~-----f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDV-------------------ESLDKTHT-----FPKLEYLNISENNIRDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             hhccccCcchhcCCCc-------------------cchhhhcc-----cccceeeecccCccccccccchhhccchhhhh
Confidence            5555554111111111                   00000112     27788888888877321 11234556777777


Q ss_pred             eCcCCcCCC
Q 003813          243 DLSNTTMDG  251 (793)
Q Consensus       243 ~L~~n~l~~  251 (793)
                      .+..|.++.
T Consensus       332 ~~~~n~ln~  340 (505)
T KOG3207|consen  332 RITLNYLNK  340 (505)
T ss_pred             hcccccccc
Confidence            777777763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=2e-11  Score=112.11  Aligned_cols=109  Identities=30%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             hCCCCCccEEEccCCCCCCCCCccCC-CCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCC
Q 003813           58 INSLPSLKELKLSFCKLHHFPPLSSA-NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDL  136 (793)
Q Consensus        58 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  136 (793)
                      +.+..++++|+|++|.|+.+..  ++ .+.+|+.||+++|.|+..  +.+..+++|++|++++|+++.+.+.....+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3456678999999999888763  44 578899999999998854  357788899999999999887533222468889


Q ss_pred             CEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813          137 EFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       137 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ++|++++|++...-.-..++.+++|++|++.+|+
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            9999999988732222346778888888888887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=1.8e-11  Score=116.16  Aligned_cols=131  Identities=23%  Similarity=0.294  Sum_probs=90.9

Q ss_pred             cCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhh
Q 003813          514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM  593 (793)
Q Consensus       514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (793)
                      .|+++||++|.|+ .+.+++.-.+.++.|++|+|.+..     +.++..                               
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nLa~-------------------------------  327 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNLAE-------------------------------  327 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhhhh-------------------------------
Confidence            3667777777776 455666667777777777777652     111111                               


Q ss_pred             ccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCC-ccc
Q 003813          594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI-PQS  672 (793)
Q Consensus       594 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~  672 (793)
                                +++|+.||||+|.++ .+...=..+-+.+.|.|+.|.+.  .-..++.+-+|..||+++|++.... -..
T Consensus       328 ----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~  394 (490)
T KOG1259|consen  328 ----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNH  394 (490)
T ss_pred             ----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcc
Confidence                      334567777777776 33333455677888899999887  2345788888999999999887543 356


Q ss_pred             ccCCCCCCeEEcccCcccccCC
Q 003813          673 MSNLSFLNYLNLSNNNLNGEIP  694 (793)
Q Consensus       673 l~~l~~L~~L~ls~N~l~g~ip  694 (793)
                      ++++|-|+.+-+.+|++.+...
T Consensus       395 IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  395 IGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             cccccHHHHHhhcCCCccccch
Confidence            8889999999999999987643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.8e-11  Score=122.60  Aligned_cols=211  Identities=27%  Similarity=0.309  Sum_probs=108.6

Q ss_pred             CCCCccEEEccCCCCCCCCC-ccCCCCCCCCEEECcCccCCCccc--ccccCCCCCCEEeCcCCcCccCCcccc-cCCCC
Q 003813           60 SLPSLKELKLSFCKLHHFPP-LSSANFSSLTTLDLSENEFQGQIP--SRLGNLTSLKYLDLSFNQFNSVVPGWL-SKLND  135 (793)
Q Consensus        60 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  135 (793)
                      ++.+|++..|.++.+...+. .....|++++.||||.|-+....+  .-...+|+|+.|+++.|++........ ..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45556666666665544432 234455666666666665553221  223455666666666665543222111 23455


Q ss_pred             CCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCc
Q 003813          136 LEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL  215 (793)
Q Consensus       136 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L  215 (793)
                      |+.|.++.|.++..--......+|+|+.|++..|.                         ...........+     ..|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-------------------------~~~~~~~~~~i~-----~~L  248 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-------------------------IILIKATSTKIL-----QTL  248 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-------------------------ccceecchhhhh-----hHH
Confidence            55555555555421111113345555555555552                         111011111111     567


Q ss_pred             cEEEccCccccccc-ccccCCCCCCCEEeCcCCcCCCCc-chh-----hcCCCCCCEEEccCCCCccccChhhhhcCCCC
Q 003813          216 ESLDLGSCQIFGHM-TNQLGRFKGLNFLDLSNTTMDGSI-PLS-----LGQIANLEYLDLSKNELNGTVSEIHFVNLTKL  288 (793)
Q Consensus       216 ~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  288 (793)
                      ++|||++|++.... -...+.++.|+.|+++.+.+...- |+.     ...+++|++|++..|++...-.-..+..+++|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            77777777764322 133567777888888877776432 221     23457788888888877533222345556666


Q ss_pred             cEEECCCCeeee
Q 003813          289 VTFRANGNSLIF  300 (793)
Q Consensus       289 ~~L~l~~n~l~~  300 (793)
                      +.|.+..|.+..
T Consensus       329 k~l~~~~n~ln~  340 (505)
T KOG3207|consen  329 KHLRITLNYLNK  340 (505)
T ss_pred             hhhhcccccccc
Confidence            666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.8e-11  Score=116.23  Aligned_cols=181  Identities=25%  Similarity=0.323  Sum_probs=112.6

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCC-----------------------ccCCCCCCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPP-----------------------LSSANFSSLT   89 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~   89 (793)
                      .-+++|+.+.++.+.-..+.+.   ...-|.|+++...+..++..+.                       ..+.....|+
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~---~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt  287 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDI---ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT  287 (490)
T ss_pred             HHhhhhheeeeeccchhheece---eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence            4456666676666654443221   1123566666666655443221                       0112234677


Q ss_pred             EEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCC
Q 003813           90 TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN  169 (793)
Q Consensus        90 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n  169 (793)
                      ++|||+|.|+ .+.++..-.|.++.|++|+|++..+  +.+..+++|++|||++|.++ .+... -.++-+.++|.+++|
T Consensus       288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTLKLAQN  362 (490)
T ss_pred             hccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh-HhhhcCEeeeehhhh
Confidence            7888888777 5566677777888888888887764  33677788888888888776 44443 456667777888777


Q ss_pred             CCCCCCCcccccCCCCCcEEEccCCcccc-cchhHHhhhccccCCCccEEEccCccccccc
Q 003813          170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQ-DISEILGIFSACVANELESLDLGSCQIFGHM  229 (793)
Q Consensus       170 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  229 (793)
                      . +  .-...++++-+|..|++..|++.. +-...++.+     +.|+.+.+.+|.+.+..
T Consensus       363 ~-i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  363 K-I--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGSV  415 (490)
T ss_pred             h-H--hhhhhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCccccc
Confidence            4 2  122345666677778888777754 223345555     77888888888875543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=8.3e-11  Score=114.70  Aligned_cols=241  Identities=20%  Similarity=0.221  Sum_probs=118.0

Q ss_pred             cCCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCC----CCCC------ccCCCCCCCCEEECcCccCC
Q 003813           32 LSGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLH----HFPP------LSSANFSSLTTLDLSENEFQ   99 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~------~~~~~l~~L~~L~Ls~n~i~   99 (793)
                      +..+..++.++|++|.+..-  ......+.+.++|+..++|+---.    .+++      .++..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34556666666666666542  112234455566666666653111    1111      13445566777777777665


Q ss_pred             Cccccc----ccCCCCCCEEeCcCCcCccCCcc-------------cccCCCCCCEEEccCCccccccCh----hhhcCC
Q 003813          100 GQIPSR----LGNLTSLKYLDLSFNQFNSVVPG-------------WLSKLNDLEFLSLQSNRLQGNISS----LGLENL  158 (793)
Q Consensus       100 ~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~i~~----~~~~~l  158 (793)
                      ...+..    +..+..|++|.|.+|.+.-.--.             ..+.-+.|+++...+|++. .-+.    ..|...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSH  184 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhc
Confidence            433333    24456666666666655322111             1223456666666666654 2221    224555


Q ss_pred             CCCcEEEcCCCCCCCCC---CcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCC
Q 003813          159 TSIQTLLLSGNDELGGK---IPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR  235 (793)
Q Consensus       159 ~~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  235 (793)
                      +.|+.+.+..|.+-...   +...+..+++|+.|++..|-++..-...                         +...+..
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-------------------------LakaL~s  239 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-------------------------LAKALSS  239 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-------------------------HHHHhcc
Confidence            66666666666521111   1223444444444444444443322222                         2233444


Q ss_pred             CCCCCEEeCcCCcCCCCcchhhc-----CCCCCCEEEccCCCCcccc---ChhhhhcCCCCcEEECCCCee
Q 003813          236 FKGLNFLDLSNTTMDGSIPLSLG-----QIANLEYLDLSKNELNGTV---SEIHFVNLTKLVTFRANGNSL  298 (793)
Q Consensus       236 l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l  298 (793)
                      +++|++|++++|.+......+|.     ..++|+.|.+.+|.++...   -.......+.|..|++++|.+
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55555555555555443333321     2456666666666654211   112344466666677777666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=6.7e-10  Score=128.01  Aligned_cols=154  Identities=23%  Similarity=0.327  Sum_probs=114.7

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC--CCCCCCccCCCCCCCCEEECcCccCCCcccccccCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK--LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLT  110 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  110 (793)
                      ......+...+.+|.+..++..    ..++.|++|-+..|.  +..++...|..++.|++|||++|.--+.+|..++.+-
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             cchhheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            3456778888888888776442    356688898888886  6777766788899999999998877678899999999


Q ss_pred             CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC-CCCCCCcccccCCCCCcEE
Q 003813          111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND-ELGGKIPTSFGRFCKLKSF  189 (793)
Q Consensus       111 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L  189 (793)
                      +||+|++++..+.. +|..++++..|.+|++..+.....++.. ...+++|++|.+..-. .........+.++..|+.+
T Consensus       596 ~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l  673 (889)
T KOG4658|consen  596 HLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL  673 (889)
T ss_pred             hhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence            99999999998875 7888999999999999888765444433 6668999999887653 1223334445556666665


Q ss_pred             Ecc
Q 003813          190 STG  192 (793)
Q Consensus       190 ~l~  192 (793)
                      ...
T Consensus       674 s~~  676 (889)
T KOG4658|consen  674 SIT  676 (889)
T ss_pred             eee
Confidence            553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=7.8e-10  Score=83.34  Aligned_cols=59  Identities=44%  Similarity=0.649  Sum_probs=28.8

Q ss_pred             CCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc
Q 003813          630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN  688 (793)
Q Consensus       630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  688 (793)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555555543333444455555555555555544444445555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.6e-09  Score=81.61  Aligned_cols=61  Identities=30%  Similarity=0.452  Sum_probs=57.0

Q ss_pred             cceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813          605 NLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL  665 (793)
Q Consensus       605 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  665 (793)
                      +.|+.|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4579999999999987778999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=2.5e-10  Score=123.56  Aligned_cols=128  Identities=32%  Similarity=0.374  Sum_probs=84.3

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL  112 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  112 (793)
                      ..+..++.+++..|.+....   ..+..+.+|+.|++.+|+|..+.. .+..+++|++|++++|.|+..  ..+..++.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~---~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKIL---NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhhhhh---cccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccch
Confidence            34566666667777766621   124566777777777777777663 266677777777777777754  345566667


Q ss_pred             CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcEEEcCCCC
Q 003813          113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQTLLLSGND  170 (793)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~  170 (793)
                      +.|++++|.+...  ..+..++.|+.+++++|.+. .+.. . ...+.+++.+.+.+|.
T Consensus       143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             hhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCc
Confidence            7777777777654  34555777777777777776 4444 1 3566777777777775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=2.9e-10  Score=122.99  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCC---Cccc-ccCCCCCCeE
Q 003813          607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY---IPQS-MSNLSFLNYL  682 (793)
Q Consensus       607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L  682 (793)
                      |+.+++++|++. .++..+..+..+..|++++|++...-  .+.....+..+.++.|.+...   .+.. ....+.++.+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            456666666665 33345555666666666666665221  244455556666666655421   1111 3445556666


Q ss_pred             EcccCcccccCC
Q 003813          683 NLSNNNLNGEIP  694 (793)
Q Consensus       683 ~ls~N~l~g~ip  694 (793)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            666666655444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=8.4e-09  Score=119.07  Aligned_cols=270  Identities=24%  Similarity=0.251  Sum_probs=158.5

Q ss_pred             CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCcc--CCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCC
Q 003813            9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN--LSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFS   86 (793)
Q Consensus         9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   86 (793)
                      ....+.+.+-+|.+..+++.    ...+.|++|-+..|.  +..++  ...|..+|.|++|||++|.-..-.|..++.+-
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             hhheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            35567777777776555554    345679999988886  45542  23467899999999998854344445889999


Q ss_pred             CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEE
Q 003813           87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLL  165 (793)
Q Consensus        87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~  165 (793)
                      +||+|++++..+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+..-.... ......+.++.+|+.+.
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            9999999999999 789999999999999999888766667777789999999987654221 11122245566666665


Q ss_pred             cCCCCCCCCCCcccccCCCCCc----EEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCC------
Q 003813          166 LSGNDELGGKIPTSFGRFCKLK----SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR------  235 (793)
Q Consensus       166 L~~n~~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------  235 (793)
                      .....   ..+...+..+..|.    .+.+..+... ..+..+..+     .+|+.|.+.++.+..........      
T Consensus       675 ~~~~s---~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l-----~~L~~L~i~~~~~~e~~~~~~~~~~~~~~  745 (889)
T KOG4658|consen  675 ITISS---VLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSL-----GNLEELSILDCGISEIVIEWEESLIVLLC  745 (889)
T ss_pred             eecch---hHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccc-----cCcceEEEEcCCCchhhcccccccchhhh
Confidence            54432   11111222222222    1111111111 112222223     77888888888765433322211      


Q ss_pred             CCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813          236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN  296 (793)
Q Consensus       236 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  296 (793)
                      ++++..+...++... ..+.+....++|+.|.+..+.....+.. ....+..+..+.+..+
T Consensus       746 f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~  804 (889)
T KOG4658|consen  746 FPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFN  804 (889)
T ss_pred             HHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhcccEEeccc
Confidence            223333333333322 2233344457788888877765543332 3344444444333333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=2.8e-08  Score=94.91  Aligned_cols=114  Identities=24%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCC
Q 003813            9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSL   88 (793)
Q Consensus         9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   88 (793)
                      ...++.|-+.++.|....+...+-...+.++.+||.+|.|++..++...+.++|.|++|+++.|.+.......-....+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            33444555666665444333322346778888888888888876666666788888888888887765443222456678


Q ss_pred             CEEECcCccCCCc-ccccccCCCCCCEEeCcCCcC
Q 003813           89 TTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQF  122 (793)
Q Consensus        89 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l  122 (793)
                      ++|-|.+..+.-. ....+..+|.+++|.+|.|.+
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            8888877766522 223456677777777777744

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=3e-09  Score=113.17  Aligned_cols=180  Identities=28%  Similarity=0.320  Sum_probs=114.9

Q ss_pred             CCCCCCCCCccEEEccCCccccccCccccCC-CCCCEEeCCCCccc----------ccCchhHHhhcccCcEEEccCccc
Q 003813          457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNF-TILEALDMGENELV----------GNIPTWMGERFSRLIILNLRSNKF  525 (793)
Q Consensus       457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~----------~~~p~~~~~~l~~L~~L~L~~n~l  525 (793)
                      |-.+..+.+|++|.++++.+...  ..+..+ ..|+.|- ..|.+.          |.+....  -...|.+.+.+.|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence            55666788999999999988741  122221 1233332 122211          1111111  012466777788887


Q ss_pred             cccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhcc
Q 003813          526 HGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILN  605 (793)
Q Consensus       526 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (793)
                      . ....++.-++.|+.|+|++|+++..                                              .....++
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v----------------------------------------------~~Lr~l~  209 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKV----------------------------------------------DNLRRLP  209 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhh----------------------------------------------HHHHhcc
Confidence            7 5556677778888888888887621                                              1222345


Q ss_pred             ceeEEEcccCcceeeCcc-ccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc-ccccCCCCCCeEE
Q 003813          606 LVRGIDISKNNFSGEVPV-EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP-QSMSNLSFLNYLN  683 (793)
Q Consensus       606 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  683 (793)
                      .|+.|||++|.+. .+|. ....++ |+.|++++|.++. . ..+.+|++|+.||+|+|-+++.-. .-+..|.+|+.|+
T Consensus       210 ~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  210 KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             cccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence            5678888888887 4443 333444 8899999999883 3 357889999999999998875432 2255677888999


Q ss_pred             cccCccccc
Q 003813          684 LSNNNLNGE  692 (793)
Q Consensus       684 ls~N~l~g~  692 (793)
                      |.+|++.|-
T Consensus       286 LeGNPl~c~  294 (1096)
T KOG1859|consen  286 LEGNPLCCA  294 (1096)
T ss_pred             hcCCccccC
Confidence            999998764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.5e-09  Score=115.27  Aligned_cols=99  Identities=33%  Similarity=0.418  Sum_probs=44.2

Q ss_pred             ccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccC
Q 003813           64 LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS  143 (793)
Q Consensus        64 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  143 (793)
                      |.+.+.++|.+..... ++.-++.|+.|||++|+++..  +.+..|++|++|||++|.+..+.--....+. |+.|.+++
T Consensus       166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3444444444444432 344444555555555555422  2444555555555555555442211122222 55555555


Q ss_pred             CccccccChhhhcCCCCCcEEEcCCC
Q 003813          144 NRLQGNISSLGLENLTSIQTLLLSGN  169 (793)
Q Consensus       144 n~l~~~i~~~~~~~l~~L~~L~L~~n  169 (793)
                      |.++ .+..  +.++.+|+.||++.|
T Consensus       242 N~l~-tL~g--ie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  242 NALT-TLRG--IENLKSLYGLDLSYN  264 (1096)
T ss_pred             cHHH-hhhh--HHhhhhhhccchhHh
Confidence            5444 2221  445555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.46  E-value=8.9e-09  Score=86.68  Aligned_cols=116  Identities=28%  Similarity=0.410  Sum_probs=92.7

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      -..+..++|++|++..+++.+..+.....|+..+|++|.+..+++..-...+.+++|+|++|.++ .+|..+..++.|+.
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            34567788888888777666666777778888888888888888755556678888899999888 67878888889999


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChh
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL  153 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~  153 (793)
                      |+++.|.+.. .|..+..+.++..|+..+|.+. .++.+
T Consensus       105 lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             cccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            9999888876 6777777888888888888877 77765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=4.4e-09  Score=100.24  Aligned_cols=180  Identities=22%  Similarity=0.255  Sum_probs=109.2

Q ss_pred             CCCEEeCcCCcCccC-CcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCC-cccccCCCCCcE
Q 003813          111 SLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI-PTSFGRFCKLKS  188 (793)
Q Consensus       111 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~  188 (793)
                      .|++||||...++.. .-..+..+.+|+.|.+.++++...+... +++-.+|+.|+++.+..++... .--+.+|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            477777777665432 1233456777777777777777555554 7777777777777765443322 223567777888


Q ss_pred             EEccCCcccccchhHHhhhccccCCCccEEEccCcccc---cccccccCCCCCCCEEeCcCCc-CCCCcchhhcCCCCCC
Q 003813          189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF---GHMTNQLGRFKGLNFLDLSNTT-MDGSIPLSLGQIANLE  264 (793)
Q Consensus       189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  264 (793)
                      |+++++.+..+....+   ..+.-++|+.|+++++.-.   ..+..-...+++|.+|||++|. ++...-..|.+++.|+
T Consensus       265 LNlsWc~l~~~~Vtv~---V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVA---VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             cCchHhhccchhhhHH---HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            8888777665442211   1111267888898887421   1222223577888888888764 3434444566778888


Q ss_pred             EEEccCCCCccccCh--hhhhcCCCCcEEECCCC
Q 003813          265 YLDLSKNELNGTVSE--IHFVNLTKLVTFRANGN  296 (793)
Q Consensus       265 ~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n  296 (793)
                      +|.++.|..  .+|.  ..+...|.|.+|+..++
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            888888864  3333  13445566666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=7.7e-09  Score=87.05  Aligned_cols=86  Identities=24%  Similarity=0.380  Sum_probs=47.7

Q ss_pred             eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813          608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN  687 (793)
Q Consensus       608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  687 (793)
                      +.+++++|.|+ .+|+++..++.|+.|+++.|.+. ..|..+..|.++-.||..+|.+. .+|..+-.-+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            55566666665 55666666666666666666666 55555555666666666666655 33332222222333344555


Q ss_pred             cccccCCCC
Q 003813          688 NLNGEIPSS  696 (793)
Q Consensus       688 ~l~g~ip~~  696 (793)
                      ++.+.+|..
T Consensus       157 pl~~~~~~k  165 (177)
T KOG4579|consen  157 PLGDETKKK  165 (177)
T ss_pred             cccccCccc
Confidence            666555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.30  E-value=3e-08  Score=93.44  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             CCccEEEccCcccccccccc----cCCCCCCCEEeCcC
Q 003813          213 NELESLDLGSCQIFGHMTNQ----LGRFKGLNFLDLSN  246 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~  246 (793)
                      ..++.++||+|.|......+    +++-.+|+..+++.
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            56666777777664433322    33445555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2.6e-07  Score=88.38  Aligned_cols=190  Identities=21%  Similarity=0.232  Sum_probs=93.7

Q ss_pred             CCCCCEEECcCccCCCc--ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCc
Q 003813           85 FSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQ  162 (793)
Q Consensus        85 l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  162 (793)
                      ++.++.+||.+|.|+..  +..-+.++|.|++|+++.|.+...+...=..+.+|++|-|.+..+.-.-....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            45566666666665521  2222345666666666666655433221124556666666665543222222245566666


Q ss_pred             EEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccc--ccccccCCCCCCC
Q 003813          163 TLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG--HMTNQLGRFKGLN  240 (793)
Q Consensus       163 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~~L~  240 (793)
                      +|.++.|+               ++.+++..+.....-            +.++++....|....  ..-..-.-++++.
T Consensus       150 elHmS~N~---------------~rq~n~Dd~c~e~~s------------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  150 ELHMSDNS---------------LRQLNLDDNCIEDWS------------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             hhhhccch---------------hhhhccccccccccc------------hhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            66666663               222333322222111            122233332221100  0000011234556


Q ss_pred             EEeCcCCcCCCC-cchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee
Q 003813          241 FLDLSNTTMDGS-IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK  301 (793)
Q Consensus       241 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  301 (793)
                      .+-+..|.+... ....+..++.+.-|+|+.|++.....-..+.++++|..|.++++++...
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            666666655422 1223445566667778888776555555677788888888888877543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=4.9e-07  Score=85.42  Aligned_cols=90  Identities=20%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             CCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCCCCCC----------ccCCCCCCCCEEECcCccCCC
Q 003813           33 SGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLHHFPP----------LSSANFSSLTTLDLSENEFQG  100 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~Ls~n~i~~  100 (793)
                      ..+..++.++||+|.|.+-  ......+.+-.+|+..+++.--....-.          .++.+||+|+..+||.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3466777777777777653  1122334455666666666532211100          134455566666666665554


Q ss_pred             ccccc----ccCCCCCCEEeCcCCcC
Q 003813          101 QIPSR----LGNLTSLKYLDLSFNQF  122 (793)
Q Consensus       101 ~~~~~----~~~l~~L~~L~Ls~n~l  122 (793)
                      ..|..    ++.-+.|++|.+++|.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCC
Confidence            33322    23344555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=8.7e-08  Score=91.64  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=104.3

Q ss_pred             CCccEEEccCcccccc-cccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC-CccccChhhhhcCCCCcE
Q 003813          213 NELESLDLGSCQIFGH-MTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE-LNGTVSEIHFVNLTKLVT  290 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~  290 (793)
                      +.|+++||+...|+.. .-.-+..|.+|+.|.+.++++.+.+...++.-.+|+.|+|+.+. ++.......+++++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4688888888777532 22335678889999999999998888888888999999998764 443334446788999999


Q ss_pred             EECCCCeeeeecCCCCC--CcccccEEEccCccCC---CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEE
Q 003813          291 FRANGNSLIFKINPNWV--PPFQLTGLGVRSCRLG---PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN  365 (793)
Q Consensus       291 L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  365 (793)
                      |+++++.+.........  --.+|+.|+++++.-.   ..+......+++|.+||+++|..-.......+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            99999877654422221  1346777777776422   112222356788888888877543222222333456666666


Q ss_pred             eeCcc
Q 003813          366 ISGNQ  370 (793)
Q Consensus       366 ls~n~  370 (793)
                      +++|.
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            66654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=8.4e-06  Score=74.12  Aligned_cols=126  Identities=25%  Similarity=0.285  Sum_probs=74.1

Q ss_pred             CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813           12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL   91 (793)
Q Consensus        12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   91 (793)
                      =+.+||++.++..+.. +.  .-+.+...+||++|++..+..    +..++.|.+|.+.+|+|+.+.+..-..+++|..|
T Consensus        21 e~e~~LR~lkip~ien-lg--~~~d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LG--ATLDQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             ccccccccccccchhh-cc--ccccccceecccccchhhccc----CCCccccceEEecCCcceeeccchhhhccccceE
Confidence            3566777766532222 10  124466677777777766543    4466777777777777777776444456677777


Q ss_pred             ECcCccCCCcc-cccccCCCCCCEEeCcCCcCccCC---cccccCCCCCCEEEccCC
Q 003813           92 DLSENEFQGQI-PSRLGNLTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFLSLQSN  144 (793)
Q Consensus        92 ~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n  144 (793)
                      .|.+|+|.... -.-+..+++|++|.+-+|.++...   --.+.++++|++||++.-
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77777766221 123455667777777766665421   123455666666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=4e-06  Score=57.43  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=18.1

Q ss_pred             CCceeeccCCcccccCCccccCcCCCCEEECCCCcCC
Q 003813          630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS  666 (793)
Q Consensus       630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  666 (793)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=1.8e-05  Score=82.11  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             CCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCc-cccccCCccccCCCC
Q 003813          460 IGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN-KFHGDFPIQLCRLAS  538 (793)
Q Consensus       460 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~  538 (793)
                      +..+.+++.|++++|.++. +|.   -.++|+.|.+++|.-...+|..+   .++|+.|++++| .+. .+|      .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence            3446889999999998874 452   34579999998864434777654   357899999998 444 454      35


Q ss_pred             cCEEEcccCcc
Q 003813          539 LQILDVAYNNL  549 (793)
Q Consensus       539 L~~L~Ls~N~l  549 (793)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.1e-05  Score=55.31  Aligned_cols=37  Identities=46%  Similarity=0.709  Sum_probs=32.3

Q ss_pred             CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccc
Q 003813          653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN  690 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  690 (793)
                      ++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 56778999999999999999997

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=2.7e-05  Score=70.91  Aligned_cols=82  Identities=26%  Similarity=0.311  Sum_probs=41.2

Q ss_pred             CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEc
Q 003813           87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL  166 (793)
Q Consensus        87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  166 (793)
                      ....+||++|.+...  ..|..++.|.+|.+++|+|+.+.|.--..+++|..|.|.+|.+..--.-..+..|++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344555555555422  234455555555555555555544443445555555555555542111112455566666666


Q ss_pred             CCCC
Q 003813          167 SGND  170 (793)
Q Consensus       167 ~~n~  170 (793)
                      -+|+
T Consensus       121 l~Np  124 (233)
T KOG1644|consen  121 LGNP  124 (233)
T ss_pred             cCCc
Confidence            6554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=5.6e-06  Score=93.55  Aligned_cols=84  Identities=27%  Similarity=0.377  Sum_probs=37.3

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCC-cccccccCCCCCC
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLK  113 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~  113 (793)
                      +|+|++|.+++-.+... +......++|+|+.||+|+++++.+.  .++++++|++|.+.+=.+.. ..-..+.+|++|+
T Consensus       147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            45555555554444332 12222334555555555555554442  34455555555544444331 1112344455555


Q ss_pred             EEeCcCCc
Q 003813          114 YLDLSFNQ  121 (793)
Q Consensus       114 ~L~Ls~n~  121 (793)
                      .||+|...
T Consensus       224 vLDIS~~~  231 (699)
T KOG3665|consen  224 VLDISRDK  231 (699)
T ss_pred             eeeccccc
Confidence            55555433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=1.3e-06  Score=87.81  Aligned_cols=86  Identities=23%  Similarity=0.262  Sum_probs=43.3

Q ss_pred             CcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC-CCCCCCccC-CCCCCCCEEECcCc-cCCCcccc-cccCCCC
Q 003813           36 SLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK-LHHFPPLSS-ANFSSLTTLDLSEN-EFQGQIPS-RLGNLTS  111 (793)
Q Consensus        36 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~  111 (793)
                      ..|+.|.+.++.=.+.........++|++++|++.+|. ++...-..+ ..+++|++|++..| .++...-. -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            35666666666554443333334566777777666664 222111111 34566677766663 23322111 1234566


Q ss_pred             CCEEeCcCCc
Q 003813          112 LKYLDLSFNQ  121 (793)
Q Consensus       112 L~~L~Ls~n~  121 (793)
                      |++|+++.+.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            6666666653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.80  E-value=4.3e-05  Score=67.94  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             CCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCE
Q 003813           59 NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF  138 (793)
Q Consensus        59 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  138 (793)
                      ..+++|+.+.+..+ +..+...+|.++++++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.++ +|+.
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~  107 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE  107 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence            34444444444442 4444444444444455554433 222222334444445555544433 333333444444 4555


Q ss_pred             EEccCCccccccChhhhcCCCCC
Q 003813          139 LSLQSNRLQGNISSLGLENLTSI  161 (793)
Q Consensus       139 L~L~~n~l~~~i~~~~~~~l~~L  161 (793)
                      +.+.. .+. .++...|.++++|
T Consensus       108 i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen  108 INIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             EE-TT-B-S-S----GGG-----
T ss_pred             EEECC-Ccc-EECCccccccccC
Confidence            54443 222 3333334444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.79  E-value=6e-05  Score=67.00  Aligned_cols=124  Identities=18%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             CCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCC
Q 003813            4 HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSA   83 (793)
Q Consensus         4 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   83 (793)
                      .+|.++++|+.+.+.. .++.+....  |.++++|+.+.+.++ +..+++.  ++.++++++.+.+.. .+..++...|.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~--F~~~~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENA--FSNCTSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTT--TTT-TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhh--ccccccccccccccc-cccccee--eeecccccccccccc-ccccccccccc
Confidence            4789999999999985 566666655  889999999999885 7776543  577888999999976 77777778899


Q ss_pred             CCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCC
Q 003813           84 NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE  137 (793)
Q Consensus        84 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  137 (793)
                      .+++|+.+++..+ +......+|.++ +|+.+.+.. .+..+....|.++++|+
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9999999999876 554556778887 999999986 56666678888887774

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00013  Score=75.87  Aligned_cols=91  Identities=19%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             ccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCC-cccccCchhHHhhccc
Q 003813          436 WMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN-ELVGNIPTWMGERFSR  514 (793)
Q Consensus       436 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~  514 (793)
                      +..+.+++.|++++|.++ .+|. +  .++|+.|.+++|.-...+|+.+  .++|+.|++++| .+. .+|       .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence            445689999999999888 5562 2  3479999999866555677655  368999999999 554 555       35


Q ss_pred             CcEEEccCcccc--ccCCccccCCCCcCEEEccc
Q 003813          515 LIILNLRSNKFH--GDFPIQLCRLASLQILDVAY  546 (793)
Q Consensus       515 L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~  546 (793)
                      |+.|+++++...  +.+|      ++|+.|.+.+
T Consensus       114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~  141 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVP------NGLTSLSINS  141 (426)
T ss_pred             cceEEeCCCCCcccccCc------chHhheeccc
Confidence            778888876653  1233      3566776644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.47  E-value=6.9e-06  Score=82.82  Aligned_cols=279  Identities=18%  Similarity=0.121  Sum_probs=139.4

Q ss_pred             CCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC-CCCCCCCc-cCCCCCCC
Q 003813           11 NLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC-KLHHFPPL-SSANFSSL   88 (793)
Q Consensus        11 ~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L   88 (793)
                      .|+.|.++++.-......-.+...++++++|++.++...+.......-..|++|++|++..| .++...-. .-..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57888888874321111112346789999998888874433222333357889999999886 44443322 23468899


Q ss_pred             CEEECcCcc-CCCcc-cccccCCCCCCEEeCcCCcCccCCcccc----cCCCCCCEEEccCCccccccChh-hhcCCCCC
Q 003813           89 TTLDLSENE-FQGQI-PSRLGNLTSLKYLDLSFNQFNSVVPGWL----SKLNDLEFLSLQSNRLQGNISSL-GLENLTSI  161 (793)
Q Consensus        89 ~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~i~~~-~~~~l~~L  161 (793)
                      ++|+++++. |++.- -.-+.+++.++.+.+.+|.=.+  -+.+    +.+..+..+++..+......... .-..+..|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            999999874 44321 1234566677777777653211  1222    23444566666565322122211 12356778


Q ss_pred             cEEEcCCCCCCCCCCcccc-cCCCCCcEEEccCCcccccc-hhHHhhhccccCCCccEEEccCccccc--ccccccCCCC
Q 003813          162 QTLLLSGNDELGGKIPTSF-GRFCKLKSFSTGFTNLSQDI-SEILGIFSACVANELESLDLGSCQIFG--HMTNQLGRFK  237 (793)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~  237 (793)
                      |.|..+++...+......+ .++.+|+.+.++.++--++. ...++.    .-..|+.+++..+....  .+...-.+++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----n~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----NCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----CChhhhhhcccccceehhhhHhhhccCCc
Confidence            8888888763333222222 34566666666655421111 111111    01456666666553311  1112123456


Q ss_pred             CCCEEeCcCCcCC-CCc----chhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCC
Q 003813          238 GLNFLDLSNTTMD-GSI----PLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG  295 (793)
Q Consensus       238 ~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  295 (793)
                      .|+++.++++... +..    ...-.....|+.+.|+++.......-..+..++.|+.+++-+
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            6666666655432 110    011122344555555555543222222344444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=9.6e-05  Score=83.75  Aligned_cols=142  Identities=21%  Similarity=0.258  Sum_probs=85.7

Q ss_pred             CCccEEEccCCCCC-CCCCccC-CCCCCCCEEECcCccCCCc-ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCE
Q 003813           62 PSLKELKLSFCKLH-HFPPLSS-ANFSSLTTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF  138 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~-~~~~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  138 (793)
                      .+|++|++++.... .-.+..+ ..+|+|+.|.+++-.+... ......++++|..||+|+.+++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56777777765332 1111122 3467777777777655422 223445677777778877777664  55677777777


Q ss_pred             EEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCC-Cc----ccccCCCCCcEEEccCCcccccchhHHh
Q 003813          139 LSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK-IP----TSFGRFCKLKSFSTGFTNLSQDISEILG  205 (793)
Q Consensus       139 L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~-~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~  205 (793)
                      |.+.+=.+...-.-..+-+|++|++||+|........ +.    +.-..+++|+.||.+++.+...+-+.+-
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            7777655552222223667788888888776532222 11    1223478899999998888776655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.00014  Score=69.37  Aligned_cols=109  Identities=24%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC--CCCCCCCccCCCCCCCCEEECcCccCCCc-ccccccC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC--KLHHFPPLSSANFSSLTTLDLSENEFQGQ-IPSRLGN  108 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~  108 (793)
                      ...+..|+.|.+.+..+++...    +-.+++|++|.+|.|  ++..-.+.....+++|++|++++|++.-. .-..+..
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            3456777888888888877644    335788899999988  44433332345568999999999988721 1123456


Q ss_pred             CCCCCEEeCcCCcCccCC---cccccCCCCCCEEEccCC
Q 003813          109 LTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFLSLQSN  144 (793)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n  144 (793)
                      +.+|..|++.+|..+...   -..|.-+++|++||-...
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            677888888888766532   123556778888765443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=1.1e-05  Score=76.73  Aligned_cols=101  Identities=28%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             CCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcc-cccccCCCCC
Q 003813           34 GLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI-PSRLGNLTSL  112 (793)
Q Consensus        34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L  112 (793)
                      .+.+.+.|++-++.+.++.    ....++.|++|.||-|+|+.+.+  +..|++|++|+|..|.|.... -.-+.++++|
T Consensus        17 dl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            3455666666666666541    23456666666666666666653  666666666666666665321 1234566667


Q ss_pred             CEEeCcCCcCccCCcc-----cccCCCCCCEEE
Q 003813          113 KYLDLSFNQFNSVVPG-----WLSKLNDLEFLS  140 (793)
Q Consensus       113 ~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~  140 (793)
                      +.|-|..|.-.+..+.     .+.-+++|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7776666655443322     234567777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00029  Score=67.37  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCc--cCCCcccccccCCCCCCEEeCcCCcCccCC-cccccCCCCC
Q 003813           60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN--EFQGQIPSRLGNLTSLKYLDLSFNQFNSVV-PGWLSKLNDL  136 (793)
Q Consensus        60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  136 (793)
                      .+..|+.|++.+..++.+.  .|-.+++|++|++|.|  ++.+..+.-...+++|++|++++|++..+. -..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            4566777777777777665  4667888889999888  666555555556688888888888876420 1223466777


Q ss_pred             CEEEccCCcccccc--ChhhhcCCCCCcEEEcCC
Q 003813          137 EFLSLQSNRLQGNI--SSLGLENLTSIQTLLLSG  168 (793)
Q Consensus       137 ~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~L~~  168 (793)
                      ..|++.+|..+..-  ....|.-+++|++|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            78888887665311  122355566676666444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.00019  Score=68.63  Aligned_cols=100  Identities=25%  Similarity=0.325  Sum_probs=70.6

Q ss_pred             CCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcE
Q 003813           85 FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQT  163 (793)
Q Consensus        85 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~  163 (793)
                      +.+.+.|++-+|.+..+  ....+++.|++|.||-|+|+...|  +..|++|++|+|..|.|. .+.. ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45677888888888744  345678899999999999887643  778899999999999887 4433 23678888888


Q ss_pred             EEcCCCCCCCCCCcc-----cccCCCCCcEEE
Q 003813          164 LLLSGNDELGGKIPT-----SFGRFCKLKSFS  190 (793)
Q Consensus       164 L~L~~n~~~~~~~~~-----~l~~l~~L~~L~  190 (793)
                      |.|..|+ ..|..+.     .+.-+++|++||
T Consensus        93 LWL~ENP-Cc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENP-CCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCC-cccccchhHHHHHHHHcccchhcc
Confidence            8888887 4444332     234444554443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.003  Score=35.84  Aligned_cols=12  Identities=42%  Similarity=0.431  Sum_probs=5.1

Q ss_pred             CceeeccCCccc
Q 003813          631 LQSLNFSYNLFT  642 (793)
Q Consensus       631 L~~L~Ls~N~l~  642 (793)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.84  E-value=0.0015  Score=73.05  Aligned_cols=111  Identities=32%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CCCCccEEEccCC-CCCCCC-CccCCCCCCCCEEECcCc-cCCCccc----ccccCCCCCCEEeCcCCc-CccCCccccc
Q 003813           60 SLPSLKELKLSFC-KLHHFP-PLSSANFSSLTTLDLSEN-EFQGQIP----SRLGNLTSLKYLDLSFNQ-FNSVVPGWLS  131 (793)
Q Consensus        60 ~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  131 (793)
                      .++.|+.|.+..+ .+.... ......+++|+.|+++++ ......+    .....+++|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3566666666655 233211 113445566666666652 1111111    122344566666666665 3332222222


Q ss_pred             -CCCCCCEEEccCCc-cccccChhhhcCCCCCcEEEcCCCC
Q 003813          132 -KLNDLEFLSLQSNR-LQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       132 -~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                       .+++|++|.+.++. ++..--......+++|++|+++++.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence             25666666655554 3321111113455666666666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.004  Score=35.28  Aligned_cols=21  Identities=52%  Similarity=0.770  Sum_probs=12.5

Q ss_pred             CCCEEECCCCcCCCCCcccccC
Q 003813          654 SIESLDFSANQLSGYIPQSMSN  675 (793)
Q Consensus       654 ~L~~L~Ls~N~l~~~~p~~l~~  675 (793)
                      +|++||+++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.49  E-value=0.0042  Score=69.41  Aligned_cols=136  Identities=25%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC--CCCCCC---CccCCCCCCCCEEECcCcc-CCCcccccc
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC--KLHHFP---PLSSANFSSLTTLDLSENE-FQGQIPSRL  106 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~  106 (793)
                      ..++.|+.|.+.++.-............++.|++|+++++  .+...+   ......+++|+.|+++++. ++...-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            4578888888887743332123345678899999999873  222221   1234566889999999887 654443444


Q ss_pred             cC-CCCCCEEeCcCCc-CccCC-cccccCCCCCCEEEccCCcccc--ccChhhhcCCCCCcEEEcCCC
Q 003813          107 GN-LTSLKYLDLSFNQ-FNSVV-PGWLSKLNDLEFLSLQSNRLQG--NISSLGLENLTSIQTLLLSGN  169 (793)
Q Consensus       107 ~~-l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~--~i~~~~~~~l~~L~~L~L~~n  169 (793)
                      .. +++|++|.+.++. ++... -.....+++|++|+++++....  .+... ..++++|+.|.+...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSL  331 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhc
Confidence            43 7899999988776 44322 2223468889999999886532  12333 445777777665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.23  E-value=0.0023  Score=59.81  Aligned_cols=84  Identities=18%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             ccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEE
Q 003813          604 LNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLN  683 (793)
Q Consensus       604 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  683 (793)
                      ....+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            455688999999987 45567788899999999999998 88999999999999999999998 7899999999999999


Q ss_pred             cccCccc
Q 003813          684 LSNNNLN  690 (793)
Q Consensus       684 ls~N~l~  690 (793)
                      +-.|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.81  E-value=0.00063  Score=73.83  Aligned_cols=135  Identities=20%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             CCccEEEccCCccccc----CCCCccCCCCCCEEEccCCcccc----cCCCC----CCCCCCccEEEccCCcccccc---
Q 003813          416 KNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTG----SLPMS----IGTLSSLMSLNLRNNRLSGII---  480 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~~---  480 (793)
                      ..+++|++..|.+++.    +.+.+.....++.++++.|.+..    .++..    +....++++|.+++|.++...   
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            3444555555544432    22334445555556666555520    11111    223455666666666655211   


Q ss_pred             -CccccCCCC-CCEEeCCCCcccccCchhHHh---hc-ccCcEEEccCccccccC----CccccCCCCcCEEEcccCccc
Q 003813          481 -PTSFNNFTI-LEALDMGENELVGNIPTWMGE---RF-SRLIILNLRSNKFHGDF----PIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       481 -~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~---~l-~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                       ...+...+. +..+++..|.+.+..-.....   .+ ..++.++++.|.++..-    ...+..++.++++.+++|.+.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence             122333333 555667776654321111111   12 34567777777766432    233445667777777777764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.68  E-value=0.0006  Score=74.00  Aligned_cols=191  Identities=20%  Similarity=0.212  Sum_probs=111.1

Q ss_pred             ccEEEccCccCCCCC----CcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccC
Q 003813          312 LTGLGVRSCRLGPRF----PLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVT  387 (793)
Q Consensus       312 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~  387 (793)
                      +..+.+..|.+....    ...+.....|+.|++++|.+.+.....+...+...                         .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~-------------------------~  143 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP-------------------------Q  143 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc-------------------------h
Confidence            444555555554332    22345566777777777777643333332222111                         1


Q ss_pred             CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc----cCCCCc----cCCCCCCEEEccCCccccc----
Q 003813          388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG----EIPDCW----MNWPRLRMLNLRNNNFTGS----  455 (793)
Q Consensus       388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~Ls~n~l~~~----  455 (793)
                      ..++.+++..|.+++.....+...+.....++.++++.|.+..    .++..+    ....++++|.+++|.++..    
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            2334445555555555555555555556778888888886631    122233    3466788888888887621    


Q ss_pred             CCCCCCCCCC-ccEEEccCCccccc----cCccccCC-CCCCEEeCCCCcccccCchhHHh---hcccCcEEEccCcccc
Q 003813          456 LPMSIGTLSS-LMSLNLRNNRLSGI----IPTSFNNF-TILEALDMGENELVGNIPTWMGE---RFSRLIILNLRSNKFH  526 (793)
Q Consensus       456 ~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~---~l~~L~~L~L~~n~l~  526 (793)
                      ....+...+. +..|++..|++...    ....+..+ ..++.++++.|.++..-..++.+   .++.++++.+++|.+.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            1112334444 66788888887643    22344555 67789999999887554444332   4668889999999887


Q ss_pred             c
Q 003813          527 G  527 (793)
Q Consensus       527 ~  527 (793)
                      .
T Consensus       304 ~  304 (478)
T KOG4308|consen  304 D  304 (478)
T ss_pred             c
Confidence            4

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.82  E-value=0.059  Score=28.21  Aligned_cols=12  Identities=42%  Similarity=0.614  Sum_probs=3.8

Q ss_pred             CceeeccCCccc
Q 003813          631 LQSLNFSYNLFT  642 (793)
Q Consensus       631 L~~L~Ls~N~l~  642 (793)
                      |+.|+|++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.27  E-value=0.091  Score=27.50  Aligned_cols=11  Identities=45%  Similarity=0.579  Sum_probs=3.2

Q ss_pred             ccEEEccCCCC
Q 003813           64 LKELKLSFCKL   74 (793)
Q Consensus        64 L~~L~Ls~n~l   74 (793)
                      |++|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.13  E-value=0.005  Score=57.64  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             hCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCC
Q 003813           58 INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE  137 (793)
Q Consensus        58 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  137 (793)
                      +......+.||++.|++..... .|+-++.|..||++.|.+. ..|..+.....++.+++..|..+. .|.++++.++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcc
Confidence            4455666666666666655543 4555566666666666666 556666666666666666666554 566666666666


Q ss_pred             EEEccCCccc
Q 003813          138 FLSLQSNRLQ  147 (793)
Q Consensus       138 ~L~L~~n~l~  147 (793)
                      ++++..|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            6666666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.87  E-value=0.18  Score=29.82  Aligned_cols=20  Identities=45%  Similarity=0.727  Sum_probs=9.4

Q ss_pred             CCccEEEccCCCCCCCCCcc
Q 003813           62 PSLKELKLSFCKLHHFPPLS   81 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~   81 (793)
                      ++|++|+|++|+++.+++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34445555555554444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.87  E-value=0.18  Score=29.82  Aligned_cols=20  Identities=45%  Similarity=0.727  Sum_probs=9.4

Q ss_pred             CCccEEEccCCCCCCCCCcc
Q 003813           62 PSLKELKLSFCKLHHFPPLS   81 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~   81 (793)
                      ++|++|+|++|+++.+++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34445555555554444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.38  E-value=0.24  Score=29.26  Aligned_cols=15  Identities=47%  Similarity=0.647  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCCC
Q 003813          653 RSIESLDFSANQLSG  667 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~  667 (793)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.38  E-value=0.24  Score=29.26  Aligned_cols=15  Identities=47%  Similarity=0.647  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCCC
Q 003813          653 RSIESLDFSANQLSG  667 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~  667 (793)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.31  E-value=0.12  Score=47.76  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             CCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813          134 NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       134 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ..++.+|.++..+. ..--..+.+++.++.|.+.+|.
T Consensus       101 ~~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  101 VKIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             ceEEEEecCCchHH-HHHHHHHhccchhhhheecccc
Confidence            34667777776665 2222224455555566665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.70  E-value=0.2  Score=46.50  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=17.4

Q ss_pred             CCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813          159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST  191 (793)
Q Consensus       159 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l  191 (793)
                      ++|+.|++++|..++......+..+++|+.|.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            455666666655455444445555555554444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.01  E-value=0.93  Score=26.10  Aligned_cols=13  Identities=38%  Similarity=0.680  Sum_probs=4.9

Q ss_pred             CCCEEeCCCCccc
Q 003813          489 ILEALDMGENELV  501 (793)
Q Consensus       489 ~L~~L~L~~N~l~  501 (793)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	793
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-22
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-35
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-08
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-06
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		2e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		5e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		6e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		7e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		8e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		9e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		9e-05
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 182/696 (26%), Positives = 280/696 (40%), Gaps = 108/696 (15%)
Query: 86  SSLTTLDLSENEFQGQIPS--RLGNLTSLKYLDLSFNQFNSVVPGWLS---KLNDLEFLS 140
           +SLT+LDLS N   G + +   LG+ + LK+L++S N  +   PG +S   KLN LE L 
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 141 LQSNRLQG-NISSLGL-ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
           L +N + G N+    L +    ++ L +SGN ++ G +  S  R   L+       N S 
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFST 214
Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
            I   LG  SA     L+ LD+   ++ G  +  +     L  L++S+    G IP    
Sbjct: 215 GI-PFLGDCSA-----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266
Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
            + +L+YL L++N+  G + +        L     +GN          VPPF        
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPF-------- 313
Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
                        S   L  L +SS   S ++P      +     L++S N+  G +P+ 
Sbjct: 314 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 379 DSPSMPLVTNLGS---IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDC 435
                  +TNL +     DLS+N  SG I   +CQ  N    ++   L  N F+G+IP  
Sbjct: 363 -------LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPT 413
Query: 436 WMNWPXXXXXXXXXXXFTGSLPMSIGT------------------------XXXXXXXXX 471
             N              +G++P S+G+                                 
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 472 XXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
                 G IP+  +N T L  + +  N L G IP W+G R   L IL L +N F G+ P 
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPA 532
Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA-- 589
           +L    SL  LD+  N  +GTIP  +   S     +       ++  + G +K    A  
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLF-------- 641
           LL  +G   E  + L+     +I+   + G       N   +  L+ SYN+         
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 642 ----------------TGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXX 685
                           +G IPD +G +R +  LD S+N+L G IPQ+M            
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 686 XXXXXGEIPSSTQLQSFGGSSFADND-LCGAPLPNC 720
                G IP   Q ++F  + F +N  LCG PLP C
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 197/481 (40%), Gaps = 37/481 (7%)
Query: 210 CVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLSLG-QIANLEYL 266
           C A  L SLDL    + G +T    LG   GL FL++S+ T+D    +S G ++ +LE L
Sbjct: 98  CSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 267 DLSKNELNGT--VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
           DLS N ++G   V  +      +L     +GN +   ++ +      L  L V S     
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFST 214
Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
             P +L     L  L IS  ++S    R   ++  +   LNIS NQ  G +P       P
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIP-------P 265
Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXX 444
           L         L+ N  +G I   +         +    LS NHF G +P  + +      
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 445 XXXXXXXFTGSLPM-SIGTXXXXXXXXXXXXXXXGIIPTSFNNFTI-LEALDMGENELVG 502
                  F+G LPM ++                 G +P S  N +  L  LD+  N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 503 NI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
            I P       + L  L L++N F G  P  L   + L  L +++N LSGTIP  + + S
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 562 AMATTD------SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG---IDI 612
            +            +   ++ Y      K +E  +L       E  S L+       I +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
           S N  +GE+P  +  L+ L  L  S N F+G IP  +G  RS+  LD + N  +G IP +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 673 M 673
           M
Sbjct: 558 M 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 182/696 (26%), Positives = 280/696 (40%), Gaps = 108/696 (15%)
Query: 86  SSLTTLDLSENEFQGQIPS--RLGNLTSLKYLDLSFNQFNSVVPGWLS---KLNDLEFLS 140
           +SLT+LDLS N   G + +   LG+ + LK+L++S N  +   PG +S   KLN LE L 
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 141 LQSNRLQG-NISSLGL-ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
           L +N + G N+    L +    ++ L +SGN ++ G +  S  R   L+       N S 
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFST 211
Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
            I   LG  SA     L+ LD+   ++ G  +  +     L  L++S+    G IP    
Sbjct: 212 GI-PFLGDCSA-----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 263
Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
            + +L+YL L++N+  G + +        L     +GN          VPPF        
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPF-------- 310
Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
                        S   L  L +SS   S ++P      +     L++S N+  G +P+ 
Sbjct: 311 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 379 DSPSMPLVTNLGS---IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDC 435
                  +TNL +     DLS+N  SG I   +CQ  N    ++   L  N F+G+IP  
Sbjct: 360 -------LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPT 410
Query: 436 WMNWPXXXXXXXXXXXFTGSLPMSIGT------------------------XXXXXXXXX 471
             N              +G++P S+G+                                 
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 472 XXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
                 G IP+  +N T L  + +  N L G IP W+G R   L IL L +N F G+ P 
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPA 529
Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA-- 589
           +L    SL  LD+  N  +GTIP  +   S     +       ++  + G +K    A  
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLF-------- 641
           LL  +G   E  + L+     +I+   + G       N   +  L+ SYN+         
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 642 ----------------TGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXX 685
                           +G IPD +G +R +  LD S+N+L G IPQ+M            
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 686 XXXXXGEIPSSTQLQSFGGSSFADN-DLCGAPLPNC 720
                G IP   Q ++F  + F +N  LCG PLP C
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 199/481 (41%), Gaps = 37/481 (7%)
Query: 210 CVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLSLG-QIANLEYL 266
           C A  L SLDL    + G +T    LG   GL FL++S+ T+D    +S G ++ +LE L
Sbjct: 95  CSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 267 DLSKNELNGT--VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
           DLS N ++G   V  +      +L     +GN +   ++ +      L  L V S     
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFST 211
Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
             P +L     L  L IS  ++S    R   ++  +   LNIS NQ  G +P     S+ 
Sbjct: 212 GIP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXX 444
            ++       L+ N  +G I   +         +    LS NHF G +P  + +      
Sbjct: 270 YLS-------LAENKFTGEIPDFLSGA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 445 XXXXXXXFTGSLPM-SIGTXXXXXXXXXXXXXXXGIIPTSFNNFTI-LEALDMGENELVG 502
                  F+G LPM ++                 G +P S  N +  L  LD+  N   G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 503 NI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
            I P       + L  L L++N F G  P  L   + L  L +++N LSGTIP  + + S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 562 AMATTD------SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG---IDI 612
            +            +   ++ Y      K +E  +L       E  S L+       I +
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
           S N  +GE+P  +  L+ L  L  S N F+G IP  +G  RS+  LD + N  +G IP +
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 673 M 673
           M
Sbjct: 555 M 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 30/228 (13%)
Query: 523 NKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDIFYASLG 581
           N   G  P  + +L  L  L + + N+SG IP  ++    + T D S +  +     S+ 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 582 DEK----IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637
                  I  D   +       Y S   L   + IS+N  +G++P    NL  L  ++ S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 638 YNLFTG---------------RIPDN--------IGVMRSIESLDFSANQLSGYIPQSMX 674
            N+  G                +  N        +G+ +++  LD   N++ G +PQ + 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 675 XXXXXXXXXXXXXXXXGEIPSSTQLQSFGGSSFADND-LCGAPLPNCT 721
                           GEIP    LQ F  S++A+N  LCG+PLP CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           L N++YL L G   KLH   IS L  L+ L +L ++   L    +   V + L +LKEL 
Sbjct: 62  LPNVRYLALGGN--KLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
           L   +L   P       ++LT L+L+ N+ Q         LT+L  LDLS+NQ  S+  G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
              KL  L+ L L  N+L+  +     + LTS+Q + L  N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           L N++YL L G   KLH   IS L  L+ L +L ++   L    +   V + L +LKEL 
Sbjct: 62  LPNVRYLALGGN--KLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
           L   +L   P       ++LT L L  N+ Q         LT+L  LDL  NQ  S+  G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 129 WLSKLNDLEFLSLQSNRLQ 147
              KL  L+ LSL  N+L+
Sbjct: 176 VFDKLTQLKQLSLNDNQLK 194

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 134/322 (41%), Gaps = 36/322 (11%)
Query: 10  SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS--LPSLKEL 67
           + LQ LDL+  + K      S + GL+LLK L +S  +     D L  I++   PSL  L
Sbjct: 275 TQLQELDLTATHLK---GLPSGMKGLNLLKKLVLSVNHF----DQLCQISAANFPSLTHL 327
Query: 68  KLS-FCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLDLSFNQFNS 124
            +    K  H          +L TLDLS N+ +       +L NL+ L+ L+LS N+   
Sbjct: 328 YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTL------LLSGNDELGGKIPT 178
           +      +   LE L L   RL  N      +NL  +Q L      L + N  L   +P 
Sbjct: 388 LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
Query: 179 SFGRFCKLKSFSTGF---TNLSQDIS--EILGIFSAC-----------VANELESLDLGS 222
                 K   F  G    TNL Q +   E+L I S+C              ++  +DL  
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVL-ILSSCGLLSIDQQAFHSLGKMSHVDLSH 506
Query: 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF 282
             +     + L   KG+ +L+L+  +++   P  L  ++    ++LS N L+ T S IHF
Sbjct: 507 NSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 283 VNLTKLVTFRANGNSLIFKINP 304
           +   K    +  G+      NP
Sbjct: 566 LTWYKENLHKLEGSEETTCANP 587

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 57  VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
           V + L +L EL+L   +L   PP    + + LT L L  NE Q         LTSLK L 
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           L  NQ   V  G   KL +L+ L L +N+L+  +     ++L  ++ L L  N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 36/280 (12%)
Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           L+NL+YL+L+G         IS LS L  L +LYI +  ++  S     + +L +L+EL 
Sbjct: 65  LTNLEYLNLNGNQIT----DISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELY 116
Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
           L+   +    PL  AN +   +L+L  N     + S L N T L YL ++ ++   V P 
Sbjct: 117 LNEDNISDISPL--ANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP- 172
Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188
            ++ L DL  LSL  N+++ +IS L   +LTS+       N ++    P       +L S
Sbjct: 173 -IANLTDLYSLSLNYNQIE-DISPLA--SLTSLHYFTAYVN-QITDITP--VANXTRLNS 225
Query: 189 FSTG---------FTNLSQ------DISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
              G           NLSQ        ++I  I +     +L+ L++GS QI     + L
Sbjct: 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD--ISVL 283
Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
                LN L L+N  +       +G + NL  L LS+N +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +A  + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +A  + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +A  + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N+L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N+L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N+L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N+L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 57  VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
           V + L SL +L L   KL   P       +SLT L+LS N+ Q         LT LK L 
Sbjct: 47  VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           L+ NQ  S+  G   KL  L+ L L  N+L+ ++     + LTS+Q + L  N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 51  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 109
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 170 NGLENL---DTLLLQEN 183

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36  SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
           +L+ +  ++ +NL +   + L ++ +LP L  L LS  +L   P L      +LT LD+S
Sbjct: 50  TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
            N         L  L  L+ L L  N+  ++ PG L+    LE LSL +N L    + L 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
            GLENL    TLLL  N
Sbjct: 169 NGLENL---DTLLLQEN 182

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 39  KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98
           + L + S  L+  SD+      L  L  L L + +L         + + L TL L+ N+ 
Sbjct: 38  EKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 99  QGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
                    +LT L  L L  NQ  S+  G   +L  L+ L L +N+LQ +I +   + L
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFS 190
           T++QTL LS N +L      +F R  KL++ +
Sbjct: 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 39  KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98
           + L + S  L+  SD+      L  L  L L + +L         + + L TL L+ N+ 
Sbjct: 38  EKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 99  QGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
                    +LT L  L L  NQ  S+  G   +L  L+ L L +N+LQ +I +   + L
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFS 190
           T++QTL LS N +L      +F R  KL++ +
Sbjct: 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           L  L++LD    N K  ++   +LS L  L +L IS  +   A +   + N L SL+ LK
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLK 451
Query: 69  LSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
           ++       F P       +LT LDLS+ + +   P+   +L+SL+ L+++ NQ  SV  
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 128 GWLSKLNDLEFLSLQSN 144
           G   +L  L+ + L +N
Sbjct: 512 GIFDRLTSLQKIWLHTN 528

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 34/229 (14%)
Query: 75  HHFPPLSSANFSSLT---TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLS 131
           H F  LSS+ F   T    LDL+     G +PS +  + SLK L L+ N F+      L 
Sbjct: 263 HRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQ-----LC 316
Query: 132 KLNDLEFLSLQSNRLQGNISSLG-----LENLTSIQTLLLSGNDELGGKIPTSFGRFCKL 186
           ++N   F SL+   ++GN+  L      LE L ++Q L LS +D     I  S     +L
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD-----IEASDCCNLQL 371
Query: 187 KSFST-GFTNLSQDISEILGI----FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
           K+     + NLS +  E LG+    F  C   +LE LD+    +  H+      F+ L+ 
Sbjct: 372 KNLRHLQYLNLSYN--EPLGLEDQAFKECP--QLELLDVAFTHL--HVKAPHSPFQNLHL 425
Query: 242 ---LDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL-NGTVSEIHFVNLT 286
              L+LS+  +D S    L  + +L +L+L  N   +G++S+ + + + 
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV 474

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	793
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-157
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-107
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  475 bits (1226), Expect = e-157
 Identities = 191/751 (25%), Positives = 291/751 (38%), Gaps = 103/751 (13%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +   L +L+ L+ L LS  +      ++S     + L  L +S  +LS    +L  + S 
Sbjct: 69  VSSSLLSLTGLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPS---RLGNLTSLKYLDL 117
             LK L +S   L     +S     +SL  LDLS N   G              LK+L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP 177
           S N+ +  V   +S+  +LEFL + SN     I  LG  + +++Q L +SGN +L G   
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGN-KLSGDFS 240

Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL-GRF 236
            +     +LK  +              G         L+ L L   +  G + + L G  
Sbjct: 241 RAISTCTELKLLNISSNQFV-------GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
             L  LDLS     G++P   G  + LE L LS N  +G +     + +  L        
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV------ 347

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN 356
                                                     L +S    S ++P    N
Sbjct: 348 ------------------------------------------LDLSFNEFSGELPESLTN 365

Query: 357 SIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416
                  L++S N   G +      +      L     L NN  +G I   +        
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPK--NTL-QELYLQNNGFTGKIPPTLSN----CS 418

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRL 476
            +    LS N+ SG IP    +  +LR L L  N   G +P  +  + +L +L L  N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 477 SGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536
           +G IP+  +N T L  + +  N L G IP W+G R   L IL L +N F G+ P +L   
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDC 537

Query: 537 ASLQILDVAYNNLSGTIPRCINNFSAMATTD--SSDQSNDIFYASLGDEKIVEDALLVMK 594
            SL  LD+  N  +GTIP  +   S     +  +  +   I    +  E      LL  +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654
           G   E  + L+     +I+   + G       N   +  L+ SYN+ +G IP  IG M  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS------------------ 696
           +  L+   N +SG IP  + +L  LN L+LS+N L+G IP +                  
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 697 ------TQLQSFGGSSFADND-LCGAPLPNC 720
                  Q ++F  + F +N  LCG PLP C
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  345 bits (888), Expect = e-107
 Identities = 157/665 (23%), Positives = 258/665 (38%), Gaps = 82/665 (12%)

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLT---TLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
            +  + LS   L+      S++  SLT   +L LS +   G +        SL  LDLS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 120 NQFNSVVP--GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP 177
           N  +  V     L   + L+FL++ SN L       G   L S++ L LS N  + G   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANV 168

Query: 178 TSF---GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLG 234
             +       +LK  +     +S D+   +          LE LD+ S      +   LG
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCV-----NLEFLDVSSNNFSTGI-PFLG 220

Query: 235 RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294
               L  LD+S   + G    ++     L+ L++S N+  G +  +    L  L      
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLA 277

Query: 295 GNSLIFKINPNWVPPF--QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
            N    +I P+++      LTGL +         P +  S   L  L +SS   S ++P 
Sbjct: 278 ENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGE 412
                +     L++S N+  G +P     S+  ++      DLS+N  SG I   +CQ  
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ-- 390

Query: 413 NFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLR 472
           N    ++   L  N F+G+IP    N   L  L+L  N  +G++P S+G+LS L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 473 NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532
            N L G IP        LE L +  N+L G IP+ +    + L  ++L +N+  G+ P  
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKW 509

Query: 533 LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLV 592
           + RL +L IL ++ N+ SG IP  + +                                 
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCR------------------------------- 538

Query: 593 MKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652
                       +L+  +D++ N F+G +P  +       S   + N   G+    I   
Sbjct: 539 ------------SLIW-LDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKND 581

Query: 653 RSIESLDFSAN--QLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGGSSFAD 709
              +    + N  +  G   + ++ LS  N  N+++    G    +     S      + 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 710 NDLCG 714
           N L G
Sbjct: 642 NMLSG 646

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 3e-32
 Identities = 83/404 (20%), Positives = 134/404 (33%), Gaps = 116/404 (28%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            IP  LG+LS L+ L L                G                          
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNML----------EG-------------------------E 457

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           +P           +            +L TL L  N+  G+IPS L N T+L ++ LS N
Sbjct: 458 IPQ------ELMYV-----------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
           +    +P W+ +L +L  L L +N   GNI +  L +  S+  L L+ N    G IP + 
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNL-FNGTIPAAM 558

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
            +    K  +           +           +         +  G  + QL R    N
Sbjct: 559 FK-QSGKIAANFIAG------KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300
             ++++    G    +     ++ +LD+S N L+G    I                    
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YI-------------------- 648

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
                   P ++  +                    L  L +    IS  IP    + +  
Sbjct: 649 --------PKEIGSM------------------PYLFILNLGHNDISGSIPDEVGD-LRG 681

Query: 361 YWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI 404
              L++S N++ G +P     +M  +T L +  DLSNN LSG I
Sbjct: 682 LNILDLSSNKLDGRIP----QAMSALTML-TEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 8e-09
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 626 TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS 685
             +  +   +   N+    +  ++  +  +ESL  S + ++G +       + L  L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 686 NNNLNGEIPSSTQL 699
            N+L+G + + T L
Sbjct: 109 RNSLSGPVTTLTSL 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 653 RSIESLDFSANQLS---GYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
             + S+D S+  L+     +  S+ +L+ L  L LSN+++NG +       S
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  272 bits (697), Expect = 7e-81
 Identities = 134/709 (18%), Positives = 227/709 (32%), Gaps = 101/709 (14%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           +P  L   +N+  L+L+    + L A      +  S L  L +    +SK    L     
Sbjct: 19  VPDDL--PTNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFNTISKLEPELC--QK 71

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           LP LK L L   +L      + A  ++LT L L  N  Q    +      +L  LDLS N
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQTLLLSGNDELGGKIPTS 179
             +S   G   +L +L+ L L +N++Q   S  L +   +S++ L LS N ++    P  
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGC 190

Query: 180 FGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQI--FGHMTNQLGRFK 237
           F    +L         L   ++E L +  A     + +L L + Q+    + T    ++ 
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELAN--TSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
            L  LDLS   ++     S   +  LEY  L  N +   +       L  +       + 
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSF 307

Query: 298 LIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
               I+        L  +               Q  K L  L +    I       F   
Sbjct: 308 TKQSISLA-----SLPKID----------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTG- 351

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN 417
                                       + NL     LSN+  S                
Sbjct: 352 ----------------------------LINL-KYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 418 IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSSLMSLNLRNNRL 476
           +    L+KN  S    D +     L +L+L  N     L       L ++  + L  N+ 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 477 SGIIPTSFNNFTILEALDMGENEL--VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC 534
             +   SF     L+ L +    L  V + P+        L IL+L +N         L 
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLE 501

Query: 535 RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK 594
            L  L+ILD+ +NNL+                                            
Sbjct: 502 GLEKLEILDLQHNNLARLWKHAN------------------------------------P 525

Query: 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654
           G  + +   L+ +  +++  N F         +L  L+ ++   N              S
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 655 IESLDFSANQLSGYIPQSMS-NLSFLNYLNLSNNNLNGEIPSSTQLQSF 702
           ++SL+   N ++    +        L  L++  N  +    S     ++
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  207 bits (529), Expect = 2e-57
 Identities = 112/574 (19%), Positives = 189/574 (32%), Gaps = 55/574 (9%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVIN 59
           +        +NL  L L   +  K+  +          L  L +S   LS          
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN---LITLDLSHNGLSSTKLGTQ--V 142

Query: 60  SLPSLKELKLSFCKLHHFPP--LSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
            L +L+EL LS  K+       L     SSL  L+LS N+ +   P     +  L  L L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 118 SFNQFNSVVPGWLS---KLNDLEFLSLQSNRLQGNI-SSLGLENLTSIQTLLLSGNDELG 173
           +  Q    +   L        +  LSL +++L     ++      T++  L LS N  L 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLN 261

Query: 174 GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
                SF    +L+ F   + N+    S  L          +  L+L             
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-----NVRYLNLKRS---------- 306

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
                     +S  ++      S   +  LE+L++  N++ G  S + F  L  L     
Sbjct: 307 -----FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSL 360

Query: 294 NGNSLIFKINPNWV----PPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK 349
           + +    +   N          L  L +   ++             L  L +    I  +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLIC 409
           +  + W  +   + + +S N+           S  LV +L  +  L   AL   +     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQ----LTRNSFALVPSLQRL-MLRRVALKN-VDSSPS 474

Query: 410 QGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT--------GSLPMSIG 461
             +    N+    LS N+ +    D      +L +L+L++NN          G     + 
Sbjct: 475 PFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 462 TLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521
            LS L  LNL +N    I    F +   L+ +D+G N L     +        L  LNL+
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN-QVSLKSLNLQ 592

Query: 522 SNKFHGDFPIQLCR-LASLQILDVAYNNLSGTIP 554
            N               +L  LD+ +N    T  
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (522), Expect = 2e-56
 Identities = 100/561 (17%), Positives = 180/561 (32%), Gaps = 89/561 (15%)

Query: 5   QLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSK-ASDSLLVINSLPS 63
            +   S+L+ L+LS    K  +        +  L  L++++V L    ++ L +  +  S
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 64  LKELKLSFCKLHHFPPLSSAN--FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           ++ L LS  +L      +     +++LT LDLS N            L  L+Y  L +N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLE--------NLTSIQTLLLSGNDELG 173
              +    L  L ++ +L+L+ +  + +IS   L          L  ++ L +  N ++ 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIP 342

Query: 174 GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
           G     F     LK  S    + +   +     F +   + L  L+L   +I    ++  
Sbjct: 343 GIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 234 GRFKGLNFLDLSNTTMDGSIPLS-LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
                L  LDL    +   +       + N+  + LS N+         F  +  L    
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLM 460

Query: 293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
                              L  +           P   Q  + L  L +S+  I+     
Sbjct: 461 LRRV--------------ALKNV--------DSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGE 412
                                            +  L  I DL +N L+           
Sbjct: 499 MLEG-----------------------------LEKL-EILDLQHNNLA----------- 517

Query: 413 NFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLR 472
                    +L K+   G           L +LNL +N F          L  L  ++L 
Sbjct: 518 ---------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 473 NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532
            N L+ +  + FNN   L++L++ +N +        G  F  L  L++R N F       
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 533 LCRLASLQILDVAYNNLSGTI 553
              +  +         LS   
Sbjct: 629 AWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  203 bits (519), Expect = 5e-56
 Identities = 115/634 (18%), Positives = 201/634 (31%), Gaps = 107/634 (16%)

Query: 87  SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
           S    D S  +   Q+P  L   T++  L+L+ NQ   +     ++ + L  L +  N +
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 147 QGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGI 206
                 L  + L  ++ L L  N EL      +F     L        ++ +  +     
Sbjct: 62  SKLEPEL-CQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 207 FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIP--LSLGQIANLE 264
                   L +LDL    +         + + L  L LSN  +       L +   ++L+
Sbjct: 120 QKN-----LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 265 YLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
            L+LS N++        F  + +L     N   L   +          T           
Sbjct: 175 KLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANT----------- 222

Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
                      + +L +S++++S      F    +                         
Sbjct: 223 ----------SIRNLSLSNSQLSTTSNTTFLGLKW------------------------- 247

Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRM 444
             TNL ++ DLS N L+                +E+F L  N+              +R 
Sbjct: 248 --TNL-TMLDLSYNNLNVVGNDSFAW----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 445 LNLRNNNFTGSL---------PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495
           LNL+ +    S+           S   L  L  LN+ +N + GI    F     L+ L +
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 496 GENELVGNIP---TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552
             +          T++    S L ILNL  NK           L  L++LD+  N +   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 553 IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI 612
           +      +  +          +IF   L   K ++    + +       S+  L     +
Sbjct: 421 LTG--QEWRGL---------ENIFEIYLSYNKYLQ----LTRNSFALVPSLQRL----ML 461

Query: 613 SKNNFSG--EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS---- 666
            +         P     L+ L  L+ S N       D +  +  +E LD   N L+    
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 667 ----GYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
               G     +  LS L+ LNL +N  +      
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 4e-45
 Identities = 92/596 (15%), Positives = 167/596 (28%), Gaps = 123/596 (20%)

Query: 110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
            S +  D S  +    VP  L    ++  L+L  N+L+  + +      + + +L +  N
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
             +    P                  L                  L+ L+L   ++    
Sbjct: 60  -TISKLEPELCQ-------------KLPM----------------LKVLNLQHNELSQLS 89

Query: 230 TNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLV 289
                    L  L L + ++         +  NL  LDLS N L+        V L  L 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQ 148

Query: 290 TFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK 349
               + N              ++  L            L + +   L  L +SS +I   
Sbjct: 149 ELLLSNN--------------KIQAL--------KSEELDIFANSSLKKLELSSNQIKEF 186

Query: 350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLIC 409
            P  F                                  L  +F L+N  L  S+   +C
Sbjct: 187 SPGCFHAI-----------------------------GRLFGLF-LNNVQLGPSLTEKLC 216

Query: 410 QGENFSKNIEFFQLSKNHFSGEIPD--CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLM 467
                + +I    LS +  S         + W  L ML+L  NN       S   L  L 
Sbjct: 217 LELANT-SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 468 SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG 527
              L  N +  +   S +    +  L++  +                    ++       
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPK 319

Query: 528 DFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVE 587
                   L  L+ L++  N++ G           +     S  ++     +L +E  V 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS--NSFTSLRTLTNETFV- 376

Query: 588 DALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD 647
                            + +  ++++KN  S       + L  L+ L+   N     +  
Sbjct: 377 -------------SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 648 N-IGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702
                + +I  +  S N+       S + +  L  L L    L     S +  Q  
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  227 bits (582), Expect = 2e-68
 Identities = 86/333 (25%), Positives = 135/333 (40%), Gaps = 56/333 (16%)

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE--IPDCWMNWPRLRMLNLRN-N 450
           D  N    G +    C  +  +  +    LS  +      IP    N P L  L +   N
Sbjct: 32  DCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
           N  G +P +I  L+ L  L + +  +SG IP   +    L  LD   N L G +P  +  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS- 146

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASL-QILDVAYNNLSGTIPRCINNFSAMATTDSS 569
               L+ +    N+  G  P      + L   + ++ N L+G IP    N          
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN---------- 196

Query: 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ 629
                                             LNL   +D+S+N   G+  V   + +
Sbjct: 197 ----------------------------------LNLAF-VDLSRNMLEGDASVLFGSDK 221

Query: 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
             Q ++ + N     +   +G+ +++  LD   N++ G +PQ ++ L FL+ LN+S NNL
Sbjct: 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 690 NGEIPSSTQLQSFGGSSFADND-LCGAPLPNCT 721
            GEIP    LQ F  S++A+N  LCG+PLP CT
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (372), Expect = 2e-39
 Identities = 73/298 (24%), Positives = 119/298 (39%), Gaps = 26/298 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISW-------LSGLSLLKHLYISSVNLSKASDS 54
           I   LGN + L     S +         +W        +    + +L +S +NL K    
Sbjct: 14  IKKDLGNPTTL-----SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68

Query: 55  LLVINSLPSLKELKLS-FCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113
              + +LP L  L +     L    P + A  + L  L ++     G IP  L  + +L 
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI-SSLGLENLTSIQTLL-LSGNDE 171
            LD S+N  +  +P  +S L +L  ++   NR+ G I  S G  + + + T + +S N  
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRN-R 185

Query: 172 LGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTN 231
           L GKIP +F     L         L  D S + G          + + L    +   +  
Sbjct: 186 LTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDK-----NTQKIHLAKNSLAFDLG- 238

Query: 232 QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTV-SEIHFVNLTKL 288
           ++G  K LN LDL N  + G++P  L Q+  L  L++S N L G +    +       
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (357), Expect = 3e-37
 Identities = 66/324 (20%), Positives = 113/324 (34%), Gaps = 67/324 (20%)

Query: 215 LESLDLGSCQIFGHMT--NQLGRFKGLNFLDLSNTTM-DGSIPLSLGQIANLEYLDLSKN 271
           + +LDL    +       + L     LNFL +       G IP ++ ++  L YL ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 272 ELNGTV-SEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWL 330
            ++G +   +    +  LVT   + N+L   +                        P  +
Sbjct: 112 NVSGAIPDFLS--QIKTLVTLDFSYNALSGTL------------------------PPSI 145

Query: 331 QSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLG 390
            S   L  +     RIS  IP  + +                              + L 
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGS-----------------------------FSKLF 176

Query: 391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN 450
           +   +S N L+G I            N+ F  LS+N   G+    + +    + ++L  N
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
           +    L   +G   +L  L+LRNNR+ G +P        L +L++  N L G IP   G 
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GG 288

Query: 511 RFSRLIILNLRSNKFHGDFPIQLC 534
              R  +    +NK     P+  C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (353), Expect = 9e-37
 Identities = 75/315 (23%), Positives = 113/315 (35%), Gaps = 62/315 (19%)

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV-NLTKLVTFRANGNSLIF 300
            D  N T  G +  +  Q   +  LDLS   L         + NL  L          I 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY------IG 84

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
            IN        L G            P  +    +L+ LYI+ T +S  IP         
Sbjct: 85  GIN-------NLVG----------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--- 124

Query: 361 YWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 420
                                       L    D S NALSG++   I        N+  
Sbjct: 125 --------------------------KTL-VTLDFSYNALSGTLPPSISS----LPNLVG 153

Query: 421 FQLSKNHFSGEIPDCWMNWPRL-RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI 479
                N  SG IPD + ++ +L   + +  N  TG +P +   L+ L  ++L  N L G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212

Query: 480 IPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
               F +    + + + +N L  ++          L  L+LR+N+ +G  P  L +L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 540 QILDVAYNNLSGTIP 554
             L+V++NNL G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 2e-36
 Identities = 72/317 (22%), Positives = 119/317 (37%), Gaps = 62/317 (19%)

Query: 327 PLWLQSQKKLNDLYISSTRIS--AKIPRRFWNSIFQYWFLNISG-NQMYGGVPKFDSPSM 383
                   ++N+L +S   +     IP    N  +   FL I G N + G +P    P++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN-FLYIGGINNLVGPIP----PAI 97

Query: 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLR 443
             +T L     +++  +SG+I   + Q     K +     S N  SG +P    + P L 
Sbjct: 98  AKLTQL-HYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 444 MLNLRNNNFTGSLPMSIGTLSSLM-SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
            +    N  +G++P S G+ S L  S+ +  NRL+G IP +F N   L  +D+  N L G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
           +     G        ++L  N    D   ++    +L  LD+  N + GT+P+ +     
Sbjct: 212 DASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 563 MATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622
           +                                        LN+      S NN  GE+P
Sbjct: 270 L--------------------------------------HSLNV------SFNNLCGEIP 285

Query: 623 VEVTNLQGLQSLNFSYN 639
               NLQ      ++ N
Sbjct: 286 QG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  135 bits (343), Expect = 2e-35
 Identities = 88/411 (21%), Positives = 131/411 (31%), Gaps = 121/411 (29%)

Query: 101 QIPSRLGNLTSL----KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS-SLGL 155
           QI   LGN T+L       D     +  V+    ++   +  L L    L         L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 156 ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL 215
            NL  +  L + G + L G IP +                                    
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPA------------------------------------ 96

Query: 216 ESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG 275
                            + +   L++L +++T + G+IP  L QI  L  LD S N L+G
Sbjct: 97  -----------------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 276 TVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKK 335
           T+                                                 P  + S   
Sbjct: 140 TL-------------------------------------------------PPSISSLPN 150

Query: 336 LNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLG-SIFD 394
           L  +     RIS  IP  + +    +  + IS N++ G +P       P   NL  +  D
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-------PTFANLNLAFVD 203

Query: 395 LSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTG 454
           LS N L G    L        KN +   L+KN  + ++         L  L+LRNN   G
Sbjct: 204 LSRNMLEGDASVLFGS----DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258

Query: 455 SLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
           +LP  +  L  L SLN+  N L G IP    N    +      N+ +   P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (299), Expect = 2e-29
 Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 53/225 (23%)

Query: 480 IPTSFNNFTIL----EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI--QL 533
           I     N T L       D      +G +      +  R+  L+L        +PI   L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 534 CRLASLQILDVA-YNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLV 592
             L  L  L +   NNL G IP  I   +                               
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------- 101

Query: 593 MKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652
                        L   + I+  N SG +P  ++ ++ L +L+FSYN  +G +P +I  +
Sbjct: 102 ------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 653 RSIESLDFSANQLSGYIPQSMSNLSFL-NYLNLSNNNLNGEIPSS 696
            ++  + F  N++SG IP S  + S L   + +S N L G+IP +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (256), Expect = 7e-24
 Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTI--SWLSGLSLLKHLYISSVNLSKASDSLLVIN 59
           +P  + +L NL  +   G         I  S+ S   L   + IS   L+          
Sbjct: 141 LPPSISSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLT---------G 188

Query: 60  SLP------SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113
            +P      +L  + LS   L     +   +  +   + L++N     +   +G   +L 
Sbjct: 189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247

Query: 114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG 173
            LDL  N+    +P  L++L  L  L++  N L G I   G  NL        + N  L 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKCLC 305

Query: 174 G 174
           G
Sbjct: 306 G 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 8e-17
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 587 EDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR-- 644
           + ALL +K  L    ++ + +   D     + G +    T    + +L+ S         
Sbjct: 8   KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67

Query: 645 IPDNIGVMRSIESLDFS-ANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQL 699
           IP ++  +  +  L     N L G IP +++ L+ L+YL +++ N++G IP        L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 700 QSFGGSSFADNDLCG 714
            +     F+ N L G
Sbjct: 128 VTL---DFSYNALSG 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (594), Expect = 4e-67
 Identities = 124/645 (19%), Positives = 199/645 (30%), Gaps = 114/645 (17%)

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
           N   S K L LSF  L H    S  +F  L  LDLS  E Q        +L+ L  L L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
            N   S+  G  S L+ L+ L      L    +   + +L +++ L ++ N     K+P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPE 143

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
            F              NL+                 LE LDL S +I       L     
Sbjct: 144 YFS-------------NLTN----------------LEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 239 LNF----LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294
           +      LDLS   M+   P +  +I  L  L L  N  +  V +     L  L   R  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 295 GNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF 354
                 + N        L GL                    + +  ++            
Sbjct: 234 LGEFRNEGNLEKFDKSALEGL----------------CNLTIEEFRLAYLDYYLDDIIDL 277

Query: 355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414
           +N +      ++    +                    + +L N          +   +  
Sbjct: 278 FNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHL-ELVNCKFGQFPTLKLKSLKR- 329

Query: 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN--NFTGSLPMSIGTLSSLMSLNLR 472
                   L+     G      ++ P L  L+L  N  +F G    S    +SL  L+L 
Sbjct: 330 --------LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 473 NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532
            N +   + ++F     LE LD   + L       +      LI L++        F   
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 533 LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLV 592
              L+SL++L +A N+        I                        +          
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDI----------------------FTE---------- 468

Query: 593 MKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652
                      L  +  +D+S+       P    +L  LQ LN S+N F          +
Sbjct: 469 -----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 653 RSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLNGEIPSS 696
            S++ LD+S N +     Q + +  S L +LNL+ N+        
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  215 bits (549), Expect = 9e-61
 Identities = 113/566 (19%), Positives = 196/566 (34%), Gaps = 60/566 (10%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
                 +LS+L  L L+  N  + +  +   SGLS L+ L     NL+   +  +    L
Sbjct: 68  EDGAYQSLSHLSTLILT-GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHL 123

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY----LD 116
            +LKEL ++   +  F      +N ++L  LDLS N+ Q    + L  L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND-----E 171
           LS N  N + PG   ++  L  L+L++N    N+    ++ L  ++   L   +      
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 172 LGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTN 231
           L     ++    C L         L   + +I+ +F+      + S  L S  I      
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIERV--K 298

Query: 232 QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTF 291
                 G   L+L N        L L    +L+ L  + N+     SE+   +L  L   
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFL-DL 354

Query: 292 RANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIP 351
             NG S     + +      L  L +    +      +L  ++ L  L    + +     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSE 413

Query: 352 RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG 411
              + S+                             NL    D+S+     +   +    
Sbjct: 414 FSVFLSL----------------------------RNL-IYLDISHTHTRVAFNGIFNG- 443

Query: 412 ENFSKNIEFFQLSKNHFSGEI-PDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLN 470
                ++E  +++ N F     PD +     L  L+L         P +  +LSSL  LN
Sbjct: 444 ---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 471 LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
           + +N    +    +     L+ LD   N ++ +    +    S L  LNL  N F     
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

Query: 531 IQ--LCRLASLQILDVAYNNLSGTIP 554
            Q  L  +   + L V    +    P
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  210 bits (536), Expect = 6e-59
 Identities = 107/569 (18%), Positives = 191/569 (33%), Gaps = 46/569 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           IP  L    + + LDLS    + L + +         L+ L +S   +    D      S
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQTIEDGAY--QS 74

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           L  L  L L+   +      + +  SSL  L   E          +G+L +LK L+++ N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 121 QFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSL--GLENLTSIQTLL-LSGNDELGGKI 176
              S  +P + S L +LE L L SN++Q    +    L  +  +   L LS N  +    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQ 193

Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT----NQ 232
           P +F    +L   +      S ++ +           E+  L LG  +  G++     + 
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 233 LGRFKGLNFLDLSNTTMDGS---IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLV 289
           L     L   +     +D     I      + N+    L    +       +      L 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 290 TFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK 349
                          +      L  L   S + G  F         L  L +S   +S K
Sbjct: 311 LVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFK 362

Query: 350 --IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHL 407
               +  + +    + L++S N +      F          L    D  ++ L       
Sbjct: 363 GCCSQSDFGTTSLKY-LDLSFNGVITMSSNFLGL-----EQL-EHLDFQHSNLKQMSEFS 415

Query: 408 ICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL-PMSIGTLSSL 466
           +       +N+ +  +S  H        +     L +L +  N+F  +  P     L +L
Sbjct: 416 VFLS---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 467 MSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFH 526
             L+L   +L  + PT+FN+ + L+ L+M  N              + L +L+   N   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIM 531

Query: 527 GDFPIQLCRLA-SLQILDVAYNNLSGTIP 554
                +L     SL  L++  N+ + T  
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (529), Expect = 6e-58
 Identities = 116/662 (17%), Positives = 219/662 (33%), Gaps = 105/662 (15%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
            K+L +S   L           S P L+ L LS C++      +  + S L+TL L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLEN 157
            Q         L+SL+ L        S+    +  L  L+ L++  N +Q         N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 158 LTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI-LGIFSACVANELE 216
           LT+++ L LS N ++     T      ++   +         ++ I  G F       L 
Sbjct: 148 LTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLH 203

Query: 217 SLDLGSCQIFGHMT-NQLGRFKGLNFLDLS------NTTMDGSIPLSLGQIANLEYLDLS 269
            L L +     ++    +    GL    L          ++     +L  + NL   +  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 270 KNELNGTVSEI--HFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFP 327
              L+  + +I   F  LT + +F     ++  +   ++   F    L + +C+ G    
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 328 LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVT 387
           L L+S K+L           +++                                +P + 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV-------------------------------DLPSLE 350

Query: 388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNL 447
            L    DLS N LS        Q +  + ++++  LS N     +   ++   +L  L+ 
Sbjct: 351 FL----DLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 448 RNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPT 506
           +++N       S+  +L +L+ L++ +          FN  + LE L M  N    N   
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 507 WMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT 566
            +      L  L+L   +     P     L+SLQ+L++++NN            +     
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----- 518

Query: 567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT 626
                                                 +L   +D S N+       E+ 
Sbjct: 519 --------------------------------------SLQV-LDYSLNHIMTSKKQELQ 539

Query: 627 NLQG-LQSLNFSYNLFTGRIPDN--IGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLN 683
           +    L  LN + N F         +  ++    L     ++    P     +  L+ LN
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS-LN 598

Query: 684 LS 685
           ++
Sbjct: 599 IT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (344), Expect = 1e-33
 Identities = 82/499 (16%), Positives = 154/499 (30%), Gaps = 79/499 (15%)

Query: 215 LESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN 274
            ++LDL    +    +     F  L  LDLS   +      +   +++L  L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 275 GTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRL-GPRFPLWLQSQ 333
             ++   F  L+ L    A   +L    N        L  L V    +   + P +  + 
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 334 KKLNDLYISSTRISAKIP---RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLG 390
             L  L +SS +I +      R           L++S N M   +       + L     
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHK--- 204

Query: 391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE------IPDCWMNWPRLRM 444
               L NN  S ++     QG      +E  +L    F  E                L +
Sbjct: 205 --LTLRNNFDSLNVMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 445 LNLR---NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
              R    + +   +      L+++ S +L +  +  +   S+N     + L++   +  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKF- 316

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS--GTIPRCINN 559
           G  PT   +   RL   + +              L SL+ LD++ N LS  G   +    
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                                                          ++ +D+S N    
Sbjct: 372 --------------------------------------------TTSLKYLDLSFNGVIT 387

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSF 678
            +      L+ L+ L+F ++        ++   +R++  LD S            + LS 
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 679 LNYLNLSNNNLNGEIPSST 697
           L  L ++ N+         
Sbjct: 447 LEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (281), Expect = 9e-26
 Identities = 78/463 (16%), Positives = 145/463 (31%), Gaps = 99/463 (21%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
            IP +L    + + LDLS N L    S   F +  +L     +   +        +    
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEI------QTIEDGA 71

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
              L                    L+ L ++   I +     F                 
Sbjct: 72  YQSL------------------SHLSTLILTGNPIQSLALGAFSGL-------------- 99

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF-SG 430
                          ++L          L+      I       K ++   ++ N   S 
Sbjct: 100 ---------------SSL-QKLVAVETNLASLENFPI----GHLKTLKELNVAHNLIQSF 139

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSL----MSLNLRNNRLSGIIPTSFNN 486
           ++P+ + N   L  L+L +N         +  L  +    +SL+L  N ++ I P +F  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ------LCRLASLQ 540
              L  L +  N    N+     +  + L +  L   +F  +  ++      L  L +L 
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 541 ILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEY 600
           I +     L   +   I+ F+ +    ++  S  +   ++                 V+ 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCL----TNVSSFSLVSVTIER---------------VKD 299

Query: 601 KSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF 660
            S     + +++    F          L+ L+ L F+ N            + S+E LD 
Sbjct: 300 FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDL 354

Query: 661 SANQLS--GYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           S N LS  G   QS    + L YL+LS N +     +   L+ 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 7e-24
 Identities = 52/295 (17%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           +N   + +   LS N         + ++P L++L+L           +  +LS L +L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG-DFP 530
             N +  +   +F+  + L+ L   E  L       +G     L  LN+  N       P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLP 142

Query: 531 IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD--QSNDIFYASLGDEKIVED 588
                L +L+ LD++ N +       +     M   + S     N +         I   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-------NFIQPG 195

Query: 589 ALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPD 647
           A              + L   + +  N  S  V       L GL+        F      
Sbjct: 196 AF-----------KEIRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---- 239

Query: 648 NIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702
                       F  + L G    ++     L YL+   +++       T + SF
Sbjct: 240 ------EGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCLTNVSSF 287

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 3e-18
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
                   LS+L+ L ++G +F+   +                             +   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQ---ENFLP------------------------DIFTE 468

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           L +L  L LS C+L    P +  + SSL  L++S N F          L SL+ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 121 QFNSVVPGWLSKL-NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
              +     L    + L FL+L  N                 Q  LL   + +    P+ 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

Query: 180 F 180
            
Sbjct: 589 K 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 7/123 (5%)

Query: 601 KSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF 660
            ++    + +D+S N           +   LQ L+ S              +  + +L  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQLQSFGGSSFADNDLCGAP 716
           + N +      + S LS L  L     NL             L+     + A N +    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL---NVAHNLIQSFK 140

Query: 717 LPN 719
           LP 
Sbjct: 141 LPE 143

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (565), Expect = 9e-63
 Identities = 90/654 (13%), Positives = 181/654 (27%), Gaps = 108/654 (16%)

Query: 70  SFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF----NSV 125
                   P +S  +   +T L L      G++P  +G LT L+ L L  +         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNI-SSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFC 184
            P  +S     E         Q         E+ + +    ++ + +    I  S     
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-IKKSSRITL 183

Query: 185 KLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244
           K         N++     ++ +        L    +G+         +    +   +   
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTK------LRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINP 304
                  +  L    + +L  +++        +       L ++       N        
Sbjct: 238 Y-----KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRG------ 285

Query: 305 NWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA-KIPRRFWNSIFQYWF 363
                     +     +   +        +K+  +YI    +    +       + +   
Sbjct: 286 ----------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGM 334

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQL 423
           L    NQ+ G +P F S        L +  +L+ N ++    +       F++ +E    
Sbjct: 335 LECLYNQLEGKLPAFGS-----EIKL-ASLNLAYNQITEIPANFC----GFTEQVENLSF 384

Query: 424 SKNHFSGEIPD--CWMNWPRLRMLNLRNNNFTG-------SLPMSIGTLSSLMSLNLRNN 474
           + N     IP+     +   +  ++   N            L  +     ++ S+NL NN
Sbjct: 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERF-------SRLIILNLRSNKFHG 527
           ++S      F+  + L ++++  N L   IP    +           L  ++LR NK   
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 528 DFP-IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIV 586
                +   L  L  +D++YN+ S   P    N S +                       
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL----------------------- 538

Query: 587 EDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP 646
                              +    D   N    E P  +T    L  L    N     + 
Sbjct: 539 ---------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 700
           + I    +I  LD   N         +          L  +    +I     L 
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (526), Expect = 2e-57
 Identities = 86/597 (14%), Positives = 177/597 (29%), Gaps = 90/597 (15%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISW--LSGLSLLKHLYISSVNLSKASDSLLVIN 59
           +P  +G L+ L+ L L  +  K++        +S     +      ++  K         
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
               L +  ++          SS      T +    N     +   +  LT L+   +  
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
           + F +       +  + E+              L  +NL  +  + +     L  K+PT 
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLT-KLPTF 268

Query: 180 FGRFCKLKSF---STGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
                +++          +  Q   +   +  A V  +++ + +G   +           
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------- 319

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
                           +  SL ++  L  L+   N+L G +      +  KL +     N
Sbjct: 320 --------------FPVETSLQKMKKLGMLECLYNQLEGKLPAFG--SEIKLASLNLAYN 363

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQ-KKLNDLYISSTRISAKIPRRFW 355
                         Q+T +           P       +++ +L  +  ++         
Sbjct: 364 --------------QITEI-----------PANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS--IFDLSNNALSGSIFHLICQGEN 413
            S+     ++ S N++     K   P  P      +    +LSNN +S     L      
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST--- 455

Query: 414 FSKNIEFFQLSKNHFSG-------EIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSS 465
               +    L  N  +        +  + + N   L  ++LR N  T         TL  
Sbjct: 456 -GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 466 LMSLNLRNNRLSGIIPTSFNNFTILEALDMGE------NELVGNIPTWMGERFSRLIILN 519
           L+ ++L  N  S   PT   N + L+   +        N  +   P  +      L  L 
Sbjct: 515 LVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQ 572

Query: 520 LRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDI 575
           + SN       +      ++ +LD+  N         +  +          D++ DI
Sbjct: 573 IGSNDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (491), Expect = 1e-52
 Identities = 79/646 (12%), Positives = 178/646 (27%), Gaps = 118/646 (18%)

Query: 90  TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN 149
             +   + +  Q    L +   +  L L     +  VP  + +L +LE L+L S+  + N
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 150 ISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSA 209
               G + +++  +                                        +     
Sbjct: 121 ERLFGPKGISANMSDEQKQK-------------------------MRMHYQKTFVDYDPR 155

Query: 210 CVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269
              ++L    + S      +            +   +  +   +  ++ ++  L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMG 214

Query: 270 KNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLW 329
            +                                                 +      L 
Sbjct: 215 NSPFVAE------------------------------NICEAWENENSEYAQQYKTEDLK 244

Query: 330 LQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNL 389
             + K L D+ + +     K+P      + +   +N++ N+   G    D         L
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQ-----AL 298

Query: 390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF-SGEIPDCWMNWPRLRMLNLR 448
                                     + I+   +  N+  +  +        +L ML   
Sbjct: 299 ADAPVG--------------------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 449 NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM 508
            N   G LP + G+   L SLNL  N+++ I          +E L    N+L      + 
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 509 GERFSRLIILNLRSNKFHG-------DFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
            +  S +  ++   N+                 +  ++  ++++ N +S       +  S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG-E 620
            +++ +            L    + E     +K     +K+   L   ID+  N  +   
Sbjct: 458 PLSSIN------------LMGNMLTEIPKNSLKDENENFKNTYLLTS-IDLRFNKLTKLS 504

Query: 621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESL------DFSANQLSGYIPQSMS 674
                T L  L  ++ SYN F+   P       +++        D   N+     P+ ++
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 675 NLSFLNYLNLSNNNLNGEIPSS--TQLQSFGGSSFADNDLCGAPLP 718
               L  L + +N++   +       +         DN      L 
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (387), Expect = 5e-39
 Identities = 60/500 (12%), Positives = 137/500 (27%), Gaps = 122/500 (24%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTI-SWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
              +  NL +L  +++           + ++L  L  ++ + ++               +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNL---TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 61  LPS------LKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113
           L        ++ + + +  L  FP  +S      L  L+   N+ +G++P+  G+   L 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLA 356

Query: 114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG 173
            L+L++NQ   +   +      +E LS   N+L+   +    ++++ +  +  S N E+G
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EIG 415

Query: 174 GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
                +F                                  + S++L + QI        
Sbjct: 416 SVDGKNFD------PLDPTPFKGIN----------------VSSINLSNNQISKFPKELF 453

Query: 234 GRFKGLNFLDLSN-------TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286
                L+ ++L                  +      L  +DL  N+L     +     L 
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 287 KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRI 346
            LV    + N                +             P    +   L    I +   
Sbjct: 514 YLVGIDLSYN--------------SFSKF-----------PTQPLNSSTLKGFGIRNQ-- 546

Query: 347 SAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFH 406
                             +  GN+     P+                          I  
Sbjct: 547 -----------------RDAQGNRTLREWPE-------------------------GITL 564

Query: 407 LICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSL 466
                     ++   Q+  N     + +     P + +L++++N         +      
Sbjct: 565 C--------PSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 467 MSLNLRNNRLSGIIPTSFNN 486
               L  ++   I      +
Sbjct: 614 GMYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 6e-24
 Identities = 41/313 (13%), Positives = 80/313 (25%), Gaps = 63/313 (20%)

Query: 411 GENFSKNIEFFQLSKNHFSGEIPDCWMNWP--------RLRMLNLRNNNFTGSLPMSIGT 462
           G+N+S+     Q   N    +  D W   P        R+  L+L     +G +P +IG 
Sbjct: 44  GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103

Query: 463 LSSLMSLNLRNNRLSG----IIPTSFNNFTILEALDMGENELVGNIPTWMG-ERFSRLII 517
           L+ L  L L ++          P   +     E               +   E FS LI 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFY 577
             + S+                  +    NN++  + + +   +                
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT---------------- 206

Query: 578 ASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637
                                       L R   +  + F  E   E          N  
Sbjct: 207 ---------------------------KL-RQFYMGNSPFVAENICEAWEN-----ENSE 233

Query: 638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST 697
           Y             ++ +  ++         +P  +  L  +  +N++ N          
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 698 QLQSFGGSSFADN 710
             Q+   +   + 
Sbjct: 294 DWQALADAPVGEK 306

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (507), Expect = 6e-55
 Identities = 110/558 (19%), Positives = 182/558 (32%), Gaps = 51/558 (9%)

Query: 2   IPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
                  L NL +LDL+      +H DT         L  L +++  L   +++ L  + 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDT---FQSQHRLDTLVLTANPLIFMAETAL--SG 103

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
             +LK L      +     +   N  +L +L L  N        +      LK LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
             + +    +S L     LSL  N         G  +    Q+L   G   L        
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL- 222

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
            +   ++S   G      D      +F       +ES++L     F   +N    F GL 
Sbjct: 223 -KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300
            LDL+ T +   +P  L  ++ L+ L LS N+    + +I   N   L      GN+   
Sbjct: 282 ELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRL 339

Query: 301 KINPNWVPPF-QLTGLGVRSCRLG--PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
           ++    +     L  L +    +       L L++   L  L +S     +     F   
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE- 398

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN 417
                                          L  + DL+   L         Q       
Sbjct: 399 ----------------------------CPQL-ELLDLAFTRLKVKDAQSPFQN---LHL 426

Query: 418 IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT---LSSLMSLNLRNN 474
           ++   LS +         +   P L+ LNL+ N+F         +   L  L  L L   
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC 534
            LS I   +F +  ++  +D+  N L  +    +     + I LNL SN      P  L 
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH--LKGIYLNLASNHISIILPSLLP 544

Query: 535 RLASLQILDVAYNNLSGT 552
            L+  + +++  N L  T
Sbjct: 545 ILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (483), Expect = 1e-51
 Identities = 99/634 (15%), Positives = 186/634 (29%), Gaps = 94/634 (14%)

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS 124
           K        L+  P       +S   L+ S N       +    L +L +LDL+  Q   
Sbjct: 15  KTYNCENLGLNEIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFC 184
           +        + L+ L L +N L   ++   L    +++ L       +            
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQT-GISSIDFIPLHNQK 129

Query: 185 KLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244
            L+S   G  ++S   S  L          L+ LD  +  I       +   +    L L
Sbjct: 130 TLESLYLGSNHIS---SIKLPKGFPTEK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 245 S-NTTMDGSIPLSLGQIANLEYLDLSKNELNGTV-SEIHFVNLTKLVTFRANGNSLIFKI 302
           + N      I       A  + L+    +    +   +    +  L              
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD---- 240

Query: 303 NPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYW 362
               + P    GL   S                +  + +            F        
Sbjct: 241 --EDISPAVFEGLCEMS----------------VESINLQKHYFFNISSNTFHCFS-GLQ 281

Query: 363 FLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS--KNIEF 420
            L+++   +           +  +  L     LS N              + S   ++  
Sbjct: 282 ELDLTATHLSELPSGL--VGLSTLKKL----VLSANKFENLC------QISASNFPSLTH 329

Query: 421 FQLSKNHFSGEIPDCWM-NWPRLRMLNLRNNNFTGS--LPMSIGTLSSLMSLNLRNNRLS 477
             +  N    E+    + N   LR L+L +++   S    + +  LS L SLNL  N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 478 GIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA 537
            +   +F     LE LD+    L         +    L +LNL  +            L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 538 SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL 597
           +LQ L++  N+      +  N+                                      
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQT----------------------------------- 474

Query: 598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIES 657
                 L  +  + +S  + S       T+L+ +  ++ S+N  T    + +  ++ I  
Sbjct: 475 ------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY- 527

Query: 658 LDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691
           L+ ++N +S  +P  +  LS    +NL  N L+ 
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (463), Expect = 4e-49
 Identities = 91/564 (16%), Positives = 174/564 (30%), Gaps = 84/564 (14%)

Query: 2   IPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           IP  L   ++ + L+ S      +   T    S L  L  L ++   +    +      S
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTT---FSRLINLTFLDLTRCQIYWIHEDTF--QS 79

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
              L  L L+   L      + +   +L  L   +          L N  +L+ L L  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQ--TLLLSGNDELGGKIPT 178
             +S+          L+ L  Q+N +   +S   + +L      +L L+GN         
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN--------- 189

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF-----GHMTNQL 233
                  +     G  + +                  +SL+ G  Q       G   + +
Sbjct: 190 ------DIAGIEPGAFDSAV----------------FQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
                  F D+ +  +  ++   L ++ ++E ++L K+      S   F   + L     
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNT-FHCFSGLQELDL 285

Query: 294 NGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353
               L                            P  L     L  L +S+ +    + + 
Sbjct: 286 TATHL-------------------------SELPSGLVGLSTLKKLVLSANKFE-NLCQI 319

Query: 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
             ++      L+I GN     +      ++  +  L    DLS++ +  S          
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL----DLSHDDIETS--DCCNLQLR 373

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLR 472
              +++   LS N       + +   P+L +L+L           S    L  L  LNL 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 473 NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMG--ERFSRLIILNLRSNKFHGDFP 530
           ++ L       F+    L+ L++  N             +   RL IL L          
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 531 IQLCRLASLQILDVAYNNLSGTIP 554
                L  +  +D+++N L+ +  
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (459), Expect = 2e-48
 Identities = 94/618 (15%), Positives = 191/618 (30%), Gaps = 97/618 (15%)

Query: 35  LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
            +  + L  S   L    ++    + L +L  L L+ C+++     +  +   L TL L+
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF--SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG 154
            N       + L    +LK+L       +S+    L     LE L L SN +        
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK- 148

Query: 155 LENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN- 213
                 ++ L    N  +            +  + S     L+ + ++I GI      + 
Sbjct: 149 GFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLS-----LNLNGNDIAGIEPGAFDSA 202

Query: 214 ELESLDLGSCQIF-----GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268
             +SL+ G  Q       G   + +       F D+ +  +  ++   L ++ ++E ++L
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINL 261

Query: 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL 328
            K+      S   F   + L         L                            P 
Sbjct: 262 QKHYFFNISSNT-FHCFSGLQELDLTATHL-------------------------SELPS 295

Query: 329 WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTN 388
            L     L  L +S+ +    + +   ++      L+I GN     +      ++  +  
Sbjct: 296 GLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLR 448
           L    DLS++ +  S             +++   LS N       + +   P+L +L+L 
Sbjct: 355 L----DLSHDDIETS--DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 449 NNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW 507
                     S    L  L  LNL ++ L       F+    L+ L++  N         
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 508 MG--ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565
               +   RL IL L               L  +  +D+++N L+ +    +++      
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK---- 524

Query: 566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV 625
                                                   +   ++++ N+ S  +P  +
Sbjct: 525 ---------------------------------------GIY--LNLASNHISIILPSLL 543

Query: 626 TNLQGLQSLNFSYNLFTG 643
             L   +++N   N    
Sbjct: 544 PILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  176 bits (448), Expect = 4e-47
 Identities = 108/613 (17%), Positives = 195/613 (31%), Gaps = 115/613 (18%)

Query: 90  TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN 149
           T +        +IP  L    S + L+ SFN   ++     S+L +L FL L   ++   
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW- 71

Query: 150 ISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFS 208
           I     ++   + TL+L+ N                L   +    +              
Sbjct: 72  IHEDTFQSQHRLDTLVLTAN---------------PLIFMAETALSGPKA---------- 106

Query: 209 ACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268
                 L+ L      I       L   K L  L L +  +             L+ LD 
Sbjct: 107 ------LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL 328
             N ++  +S+    +L +                                         
Sbjct: 161 QNNAIH-YLSKEDMSSLQQA---------------------------------------- 179

Query: 329 WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTN 388
                     L ++   I+   P  F +++FQ   LN  G Q    + K    S      
Sbjct: 180 ------TNLSLNLNGNDIAGIEPGAFDSAVFQS--LNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLR 448
           LG+  D+ +  +S ++F  +C+      ++E   L K++F     + +  +  L+ L+L 
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCE-----MSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 449 NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM 508
             + +  LP  +  LS+L  L L  N+   +   S +NF  L  L +  N     + T  
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 509 GERFSRLIILNLRSNKFH--GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT 566
            E    L  L+L  +         +QL  L+ LQ L+++YN               +   
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT 626
           D +     +              +   +        +  L    ++S +           
Sbjct: 406 DLAF--TRL-------------KVKDAQSPFQNLHLLKVL----NLSHSLLDISSEQLFD 446

Query: 627 NLQGLQSLNFSYNLFTGRIPDNIGV---MRSIESLDFSANQLSGYIPQSMSNLSFLNYLN 683
            L  LQ LN   N F             +  +E L  S   LS     + ++L  +N+++
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 684 LSNNNLNGEIPSS 696
           LS+N L      +
Sbjct: 507 LSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (292), Expect = 3e-27
 Identities = 72/471 (15%), Positives = 139/471 (29%), Gaps = 91/471 (19%)

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
                 L+ S   +      +  ++ NL +LDL++ ++     +  F +  +L T     
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTA 90

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
           N LIF      +    L+G                   K L  L+   T IS  I     
Sbjct: 91  NPLIF------MAETALSGP------------------KALKHLFFIQTGIS-SIDFIPL 125

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS--IFDLSNNALSGSIFHLICQGEN 413
           ++      L +  N          S  +P         + D  NNA+       +   + 
Sbjct: 126 HNQKTLESLYLGSNH-------ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP--MSIGTLSSLMSLNL 471
                    L+ N  +  I     +    + LN         +   +   T+ SL     
Sbjct: 179 --ATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 472 RNNRLSGIIPTSFNNFTI--LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDF 529
            +     I P  F       +E++++ ++             FS L  L+L +     + 
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLS-EL 293

Query: 530 PIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA 589
           P  L  L++L+ L ++ N          +N                              
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASN------------------------------ 323

Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFT--GRIP 646
                            +  + I  N    E+      NL+ L+ L+ S++         
Sbjct: 324 --------------FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST 697
             +  +  ++SL+ S N+      ++      L  L+L+   L  +   S 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (279), Expect = 1e-25
 Identities = 49/313 (15%), Positives = 100/313 (31%), Gaps = 30/313 (9%)

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
            L+ N L      +     +  K ++     +   S        N   L  L L +N+ +
Sbjct: 87  VLTANPLI----FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE--ALDMGENELVGNIPTWMGER 511
                       L  L+ +NN +  +     ++       +L++  N++ G  P      
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--D 200

Query: 512 FSRLIILNLRSNKFHGDFPIQL--CRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS 569
            +    LN    +        L    + SL +      +     P        M+    +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ 629
            Q +  F        I  +                + ++ +D++  + S E+P  +  L 
Sbjct: 261 LQKHYFF-------NISSNTF-----------HCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI-PQSMSNLSFLNYLNLSNNN 688
            L+ L  S N F      +     S+  L    N     +    + NL  L  L+LS+++
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 689 LNGEIPSSTQLQS 701
           +      + QL++
Sbjct: 362 IETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.5 bits (220), Expect = 2e-18
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL-VINSL 61
                NL  L+ L+LS ++  L   +     GL  L+HL +   +  K +      + +L
Sbjct: 418 QSPFQNLHLLKVLNLS-HS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             L+ L LSFC L      +  +   +  +DLS N         L +L  + YL+L+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL 155
            + ++P  L  L+    ++L+ N L    S++  
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 42/275 (15%), Positives = 80/275 (29%), Gaps = 54/275 (19%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
           +  N  N      +P ++   +S   L    N L  I  T+F+    L  LD+   ++  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
                      RL  L L +N         L    +L+ L      +S      ++N   
Sbjct: 72  IHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN--- 127

Query: 563 MATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622
                                                       +  + +  N+ S    
Sbjct: 128 -----------------------------------------QKTLESLYLGSNHISSIKL 146

Query: 623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE--SLDFSANQLSGYIPQSMSNLSFLN 680
            +    + L+ L+F  N       +++  ++     SL+ + N ++G I     + +   
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQ 205

Query: 681 YLNLSNNNLNGEIPSS---TQLQSFGGSSFADNDL 712
            LN         I      + +QS    +F D D 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 41/256 (16%), Positives = 69/256 (26%), Gaps = 50/256 (19%)

Query: 468 SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG 527
           + N  N  L+ I  T  N+    E L+   N L   I      R   L  L+L   + + 
Sbjct: 16  TYNCENLGLNEIPGTLPNS---TECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 528 DFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVE 587
                      L  L +  N L       ++                             
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-------------------------- 105

Query: 588 DALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD 647
                             L + +   +   S    + + N + L+SL    N  +     
Sbjct: 106 -----------------AL-KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 648 NIGVMRSIESLDFSANQLSGYIPQSMSNLSFLN--YLNLSNNNLNGEIPSSTQLQSFGGS 705
                  ++ LDF  N +     + MS+L       LNL+ N++ G  P +     F   
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 706 SFADNDLCGAPLPNCT 721
           +F              
Sbjct: 208 NFGGTQNLLVIFKGLK 223

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (508), Expect = 8e-54
 Identities = 82/635 (12%), Positives = 174/635 (27%), Gaps = 94/635 (14%)

Query: 70  SFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGW 129
                   P +   N   +T L L+    +G++P  +G LT LK L    +        +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 130 LSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSF 189
             +    +    + +R++ +   + L+    +    L  +            +  ++   
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 190 STGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTM 249
            T   NL+  I+ I          +L+ +   +                    +      
Sbjct: 427 DTQIGNLTNRITFISKAIQRLT--KLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQ 479

Query: 250 DGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
             +  LS   + +L  ++L        + +    +L +L +     N             
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN------------- 525

Query: 310 FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
            +             R      +  K+   Y+    +           + +   L+   N
Sbjct: 526 -RGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583

Query: 370 QMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFS 429
           ++   +  F +        L +   L  N +   I    C     +  +E    S N   
Sbjct: 584 KV-RHLEAFGTN-----VKL-TDLKLDYNQIE-EIPEDFCAF---TDQVEGLGFSHNKLK 632

Query: 430 GEIPDCW--MNWPRLRMLNLRNNNFTG-----SLPMSIGTLSSLMSLNLRNNRLSGIIPT 482
             IP+ +   +   +  ++   N         S  M      +  ++ L  N +      
Sbjct: 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 483 SFNNFTILEALDMGENELVGNIPTWMGERF-------SRLIILNLRSNKFHG-DFPIQLC 534
            F   + +  + +  N +  +IP    +           L  ++LR NK        +  
Sbjct: 692 LFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 535 RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK 594
            L  L  +DV+YN  S + P    N S +                               
Sbjct: 751 TLPYLSNMDVSYNCFS-SFPTQPLNSSQL------------------------------- 778

Query: 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654
                      +    D   N    + P  +T    L  L    N     + + +     
Sbjct: 779 -------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQ 828

Query: 655 IESLDFSANQL-SGYIPQSMSNLSFLNYLNLSNNN 688
           +  LD + N   S  +      +    Y+ L +  
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (469), Expect = 1e-48
 Identities = 80/572 (13%), Positives = 167/572 (29%), Gaps = 101/572 (17%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +P  +G L+ L+ L    ++  +             +       + +      L     L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ-GQIPSRLGNLTSLKYLDLSFN 120
                L+ +  +     P+   +  SL    +     +   I   +  LT L+ +  + +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
            F        +   D E  +    +   N       NL  +  + L     +  ++P   
Sbjct: 459 PFTY-----DNIAVDWEDANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNM-TQLPDFL 511

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
                         +L +                L+SL++   +                
Sbjct: 512 Y-------------DLPE----------------LQSLNIACNRG-----------ISAA 531

Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300
            L    T     +         ++   +  N L    +      + KL       N +  
Sbjct: 532 QLKADWT----RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
                 +  F                     +  KL DL +   +I  +IP  F     Q
Sbjct: 588 ------LEAF--------------------GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620

Query: 361 YWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF-SKNIE 419
              L  S N++      F++ S+ ++ ++    D S N +     ++ C  +++   N  
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSV----DFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT-------GSLPMSIGTLSSLMSLNLR 472
              LS N       + +     +  + L NN  T            +      L +++LR
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 473 NNRLSGIIPT-SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR------SNKF 525
            N+L+ +           L  +D+  N    + PT      S+L    +R       N+ 
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLN-SSQLKAFGIRHQRDAEGNRI 794

Query: 526 HGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557
              +P  +    SL  L +  N++   +   +
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (441), Expect = 4e-45
 Identities = 92/659 (13%), Positives = 197/659 (29%), Gaps = 122/659 (18%)

Query: 78  PPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137
             +++   S     +   + +  Q    L N   +  L L+       VP  + +L +L+
Sbjct: 291 GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELK 350

Query: 138 FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
            LS  ++    +    G E LT   +        +       F  + +  + S    +  
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH--YKKMFLDYDQRLNLSDLLQDAI 408

Query: 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL 257
               E+  I           + L   QI G++TN++                   I  ++
Sbjct: 409 NRNPEMKPIKK------DSRISLKDTQI-GNLTNRI-----------------TFISKAI 444

Query: 258 GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV 317
            ++  L+ +  + +        + + +                                 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSD----------------------------- 475

Query: 318 RSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIF-QYWFLNISGNQMYGGVP 376
              +      L   + K L D+ + +     ++P   ++    Q   LNI+ N+      
Sbjct: 476 -YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS--LNIACNRGISAAQ 532

Query: 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW 436
                                  L+                I+ F +  N+   E P   
Sbjct: 533 ----------------LKADWTRLADDEDTG--------PKIQIFYMGYNNLE-EFPASA 567

Query: 437 M--NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494
                 +L +L+  +N     L  + GT   L  L L  N++  I          +E L 
Sbjct: 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGD-----FPIQLCRLASLQILDVAYNNL 549
              N+L      +  +    +  ++   NK   +       +   +  +   + ++YN +
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG 609
                      S ++T   S+  N +         I E++L    G       +  +   
Sbjct: 686 QKFPTELFATGSPISTIILSN--NLM-------TSIPENSLKPKDGNYKNTYLLTTI--- 733

Query: 610 IDISKNNFSGEVPVE--VTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESL------DFS 661
            D+  N  +  +  +   T L  L +++ SYN F+   P        +++       D  
Sbjct: 734 -DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790

Query: 662 ANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFGGSSFADNDLCGAPLP 718
            N++    P  ++    L  L + +N++  ++      QL        ADN      + 
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYIL---DIADNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (392), Expect = 4e-39
 Identities = 82/569 (14%), Positives = 162/569 (28%), Gaps = 137/569 (24%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTI-SWLSGLSLLKHLYISSVNLSKASDSLLVIN 59
           M P +  +  +L+   +     ++    I   +  L+ L+ +Y ++   +         N
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRIT--FISKAIQRLTKLQIIYFANSPFTY-------DN 464

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
                ++    + K +    LS +N   LT ++L       Q+P  L +L  L+ L+++ 
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 120 NQFNSV---------VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
           N+  S          +         ++   +  N L+   +S  L+ +  +  L    N 
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN- 583

Query: 171 ELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT 230
                         K++     F    +                L  L L   QI     
Sbjct: 584 --------------KVRHLEA-FGTNVK----------------LTDLKLDYNQI----- 607

Query: 231 NQLGRFKGLNFLDLSNTTMDGSIPLSLGQIA-NLEYLDLSKNELNGTVSEIHFVNLTKLV 289
                                 IP         +E L  S N+L    +  +  ++  + 
Sbjct: 608 --------------------EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 290 TFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK 349
           +   + N              ++   G         +          + + +S   I  K
Sbjct: 648 SVDFSYN--------------KIGSEGRNISCSMDDYKG-----INASTVTLSYNEIQ-K 687

Query: 350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS--IFDLSNNALSGSIFHL 407
            P   + +      + +S N M         P      N       DL  N L+      
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS----- 742

Query: 408 ICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLM 467
                  S +     L                  L  +++  N F+ S P      S L 
Sbjct: 743 ------LSDDFRATTLPY----------------LSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 468 SLNLR------NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521
           +  +R       NR+    PT       L  L +G N++   +   +     +L IL++ 
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYILDIA 835

Query: 522 SNKFHGDFPIQLCRLASLQILDVAYNNLS 550
            N         +C      +  + Y+   
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (255), Expect = 2e-22
 Identities = 38/295 (12%), Positives = 94/295 (31%), Gaps = 20/295 (6%)

Query: 422 QLSKNHFSGEIPDCW---MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478
                 +     +     +NW      N   + +     + +     +  L+L      G
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 479 IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS 538
            +P +    T L+ L  G +    +   +  E  +  +    +         + L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 539 LQILDVAYNNLSG---TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595
           L + D+  + ++      P   ++  ++  T   + +N I + S   +++ +  ++    
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655
               Y +I       +           +  +NL+ L  +         ++PD +  +  +
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 656 ESLDFSANQLSGY---------IPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           +SL+ + N+             +         +    +  NNL  E P+S  LQ 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (477), Expect = 6e-51
 Identities = 89/557 (15%), Positives = 176/557 (31%), Gaps = 54/557 (9%)

Query: 2   IPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
             +   N S LQ+LDLS      +         GL  L +L ++   +   S      + 
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKA---WHGLHHLSNLILTGNPIQSFSPGSF--SG 102

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSF 119
           L SL+ L     KL            +L  L+++ N     ++P+   NLT+L ++DLS+
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 120 NQFNSVVPGWLSKLNDLEF----LSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
           N   ++    L  L +       L +  N +   I     + +  +  L L GN      
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNI 220

Query: 176 IPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR 235
           + T       L            +               LE  +    +    +T     
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDE-------------RNLEIFEPSIMEGLCDVT----- 262

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
              ++   L+ T       +    +AN+  + L+   +              L   R   
Sbjct: 263 ---IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
                   P       L  L +   +          +   L+ L +S   +S      + 
Sbjct: 320 KQFPTLDLPF------LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 356 NSIFQYW-FLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414
           +        L++S N        F       +  L  + D  ++ L              
Sbjct: 372 DLGTNSLRHLDLSFNGAIIMSANFMG-----LEELQHL-DFQHSTLKRVTEFSAFLS--- 422

Query: 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRN 473
            + + +  +S  +   +    ++    L  L +  N+F  +   ++    ++L  L+L  
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 474 NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533
            +L  I    F+    L+ L+M  N L+  + +    +   L  L+   N+      I  
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 534 CRLASLQILDVAYNNLS 550
               SL   ++  N+++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (470), Expect = 5e-50
 Identities = 117/631 (18%), Positives = 192/631 (30%), Gaps = 106/631 (16%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            S K + LSF  L      S +NFS L  LDLS  E +         L  L  L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             S  PG  S L  LE L     +L   + S  +  L +++ L ++ N     K+P  F 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L        +LS               N ++++ +   Q                 
Sbjct: 151 NLTNLVHV-----DLSY--------------NYIQTITVNDLQFLRENPQVNLS------ 185

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           LD+S   +   I     Q   L  L L  N  +  + +    NL  L   R        +
Sbjct: 186 LDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY 361
            N     P  + GL                    +++  ++ T   +    +F       
Sbjct: 245 RNLEIFEPSIMEGL----------------CDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421
             ++++G  +           +P      S+  +    L                 ++  
Sbjct: 289 A-MSLAGVSI------KYLEDVPKHFKWQSL-SIIRCQLKQFPT-------LDLPFLKSL 333

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT--GSLPMSIGTLSSLMSLNLRNNRLSGI 479
            L+ N  S  I    +  P L  L+L  N  +  G    S    +SL  L+L  N    I
Sbjct: 334 TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390

Query: 480 IPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
           +  +F     L+ LD   + L             +L+ L++       DF      L SL
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 540 QILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVE 599
             L +A N+        +                        +                 
Sbjct: 451 NTLKMAGNSFKDNTLSNV----------------------FAN----------------- 471

Query: 600 YKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD 659
                  +  +D+SK             L  LQ LN S+N        +   + S+ +LD
Sbjct: 472 ----TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
            S N++             L + NL+NN++ 
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (413), Expect = 2e-42
 Identities = 102/612 (16%), Positives = 184/612 (30%), Gaps = 113/612 (18%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
            T    + +   ++P  +   +S K +DLSFN    +     S  ++L++L L    ++ 
Sbjct: 14  ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 149 NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIF 207
            I       L  +  L+L+GN                ++SFS G F+ L+          
Sbjct: 71  -IEDKAWHGLHHLSNLILTGN---------------PIQSFSPGSFSGLTS--------- 105

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS-NTTMDGSIPLSLGQIANLEYL 266
                  LE+L     ++    +  +G+   L  L+++ N      +P     + NL ++
Sbjct: 106 -------LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRF 326
           DLS N +   ++      L +                     P     L +    +    
Sbjct: 159 DLSYNYIQT-ITVNDLQFLREN--------------------PQVNLSLDMSLNPID-FI 196

Query: 327 PLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLV 386
                   KL++L +     S+ I +    ++       +   + +      +     ++
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE-FKDERNLEIFEPSIM 255

Query: 387 TNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLN 446
             L  +          + F       +   N+    L+         +      + + L+
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLS 313

Query: 447 LRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP- 505
           +               L  L SL L  N+ S  I         L  LD+  N L  +   
Sbjct: 314 IIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565
           ++     + L  L+L  N            L  LQ LD  ++ L                
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF---------- 417

Query: 566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV 625
                     F                         S+  L   +DIS  N   +     
Sbjct: 418 --------SAF------------------------LSLEKL-LYLDISYTNTKIDFDGIF 444

Query: 626 TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNL 684
             L  L +L  + N F      N+     ++  LD S  QL          L  L  LN+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 685 SNNNLNGEIPSS 696
           S+NNL     S 
Sbjct: 505 SHNNLLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 1e-36
 Identities = 89/493 (18%), Positives = 152/493 (30%), Gaps = 45/493 (9%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVIN 59
             P     L++L+ L         L +  I  L  L   K L ++   +          +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL---KKLNVAHNFIHSCKLPA-YFS 150

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLT----TLDLSENEFQGQIPSRLGNLTSLKYL 115
           +L +L  + LS+  +                   +LD+S N     I  +      L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 116 DLSFNQFNS-VVPGWLSKLNDLEFLSLQSNRLQGN-----ISSLGLENLTSIQTLLLSGN 169
            L  N  +S ++   L  L  L    L     +            +E L  +        
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 170 D-ELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH 228
                      F     + + S    ++         +       + +SL +  CQ+   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSIIRCQLKQF 322

Query: 229 MTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI-HFVNLTK 287
            T  L     L  L L+     GSI      + +L YLDLS+N L+ +       +    
Sbjct: 323 PTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 288 LVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLW-LQSQKKLNDLYISSTRI 346
           L     + N  I  ++ N++   +L  L  +   L          S +KL  L IS T  
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 347 SAKIPRRFWN--SIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI 404
                  F    S+     L ++GN            +   +T L    DLS   L    
Sbjct: 437 KIDFDGIFLGLTSLN---TLKMAGNSFKDNTLSNVFANTTNLTFL----DLSKCQLEQIS 489

Query: 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464
           + +     +    ++   +S N+        +     L  L+   N    S  +      
Sbjct: 490 WGVF----DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 465 SLMSLNLRNNRLS 477
           SL   NL NN ++
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 7e-24
 Identities = 53/321 (16%), Positives = 103/321 (32%), Gaps = 29/321 (9%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           ++   + +   LS N         + N+  L+ L+L           +   L  L +L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG-DFP 530
             N +    P SF+  T LE L   E +L       +G+    L  LN+  N  H    P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLP 146

Query: 531 IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590
                L +L  +D++YN +        N+   +      + S D+    +  + I + A 
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITV---NDLQFLRENPQVNLSLDMSLNPI--DFIQDQAF 201

Query: 591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRI---- 645
             +K            +  + +  N  S  +      NL GL         F        
Sbjct: 202 QGIK------------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 646 --PDNIGVMR--SIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
             P  +  +   +I+    +              L+ ++ ++L+  ++   +    +   
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK 308

Query: 702 FGGSSFADNDLCGAPLPNCTK 722
           +   S     L   P  +   
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPF 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.3 bits (248), Expect = 9e-22
 Identities = 71/466 (15%), Positives = 137/466 (29%), Gaps = 106/466 (22%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
            +P  +   ++ + +DLS N L   +    F N ++L     +   +        +    
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEI------ETIEDKA 75

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
             GL                    L++L ++   I +  P  F                 
Sbjct: 76  WHGL------------------HHLSNLILTGNPIQSFSPGSFSGL-------------- 103

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG- 430
                          T+L          L+      I Q       ++   ++ N     
Sbjct: 104 ---------------TSL-ENLVAVETKLASLESFPIGQ----LITLKKLNVAHNFIHSC 143

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS----SLMSLNLRNNRLSGIIPTSFNN 486
           ++P  + N   L  ++L  N         +  L       +SL++  N +  I   +F  
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ---------LCRLA 537
              L  L +  N    NI     +  + L +  L   +F  +  ++         LC + 
Sbjct: 204 IK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV- 261

Query: 538 SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL 597
           ++    + Y N         +  + ++    +     I Y                    
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG--VSIKY-------------------- 299

Query: 598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIES 657
           +E        + + I +            +L  L+SL  + N  +  I      + S+  
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSY 354

Query: 658 LDFSANQLSGYIPQSMSNLSF--LNYLNLSNNNLNGEIPSSTQLQS 701
           LD S N LS     S S+L    L +L+LS N       +   L+ 
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 1e-15
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
                  L++L  L ++G N        +  +  + L  L +S   L + S  +   ++L
Sbjct: 440 FDGIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTL 496

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             L+ L +S   L            SL+TLD S N  +           SL + +L+ N 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 122 FNS 124
              
Sbjct: 557 VAC 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (426), Expect = 2e-43
 Identities = 111/557 (19%), Positives = 193/557 (34%), Gaps = 53/557 (9%)

Query: 8   NLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
            L+  + L LS      + A +      L  L+ L + S   +  +       +LP+L+ 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRI 77

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI--PSRLGNLTSLKYLDLSFNQFNS 124
           L L   K++   P +      L  L L        +       NL +L  LDLS NQ  S
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 125 VVPGW-LSKLNDLEFLSLQSNRLQGNISSLGLENLT--SIQTLLLSGNDELGGKIPTSFG 181
           +       KLN L+ +   SN++   +    LE L   ++    L+ N            
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
                ++      ++S   +      +   +N +      S  +          F   N 
Sbjct: 197 CMNPFRNMVLEILDVSG--NGWTVDITGNFSNAISKSQAFS--LILAHHIMGAGFGFHNI 252

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
            D    T  G          ++ +LDLS   +  +++   F  L  L       N  I K
Sbjct: 253 KDPDQNTFAGLARS------SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNK-INK 304

Query: 302 INPNWVPPFQ-LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
           I          L  L +    LG  +        K+  + +    I+  I  + +  + +
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK 363

Query: 361 YWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 420
              L++  N +          ++  + ++  IF LS N L  ++  +             
Sbjct: 364 LQTLDLRDNAL---------TTIHFIPSIPDIF-LSGNKLV-TLPKINLTANLIH----- 407

Query: 421 FQLSKNHFSG-EIPDCWMNWPRLRMLNLRNNNFTG-SLPMSIGTLSSLMSLNLRNNRLSG 478
             LS+N     +I    +  P L++L L  N F+  S   +     SL  L L  N L  
Sbjct: 408 --LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 479 IIPTS-----FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533
              T      F   + L+ L +  N L  ++P  +    + L  L+L SN+        L
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 534 CRLASLQILDVAYNNLS 550
              A+L+ILD++ N L 
Sbjct: 525 --PANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (424), Expect = 4e-43
 Identities = 128/759 (16%), Positives = 236/759 (31%), Gaps = 144/759 (18%)

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSF 119
           L + + L LSF  +      S      L  L+L        I      NL +L+ LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQ-GNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
           ++   + P     L  L  L L    L    +      NL ++  L LS N      +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLG---- 234
           SFG+   LKS       +   + E            L    L +  ++  ++   G    
Sbjct: 143 SFGKLNSLKSIDFSSNQIFL-VCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 235 --RFKGLNFLDLSN------------TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI 280
             R   L  LD+S               +  S   SL    ++       + +     + 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQN 258

Query: 281 HFVNLTK--LVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLND 338
            F  L +  +     +    +F +N                           ++ K L  
Sbjct: 259 TFAGLARSSVRHLDLSHGF-VFSLNSR-----------------------VFETLKDLKV 294

Query: 339 LYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNN 398
           L ++  +I+ KI    +  +     LN+S N                      + +L ++
Sbjct: 295 LNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL---------------------LGELYSS 332

Query: 399 ALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPM 458
              G               + +  L KNH +      +    +L+ L+LR+N  T     
Sbjct: 333 NFYG------------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----- 375

Query: 459 SIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIIL 518
           +I  + S+  + L  N+L  +   +         + + EN L      +   R   L IL
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 519 NLRSNKFHGDFPIQLCR-LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFY 577
            L  N+F      Q      SL+ L +  N L       +                D+F 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC--------------WDVFE 477

Query: 578 ASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637
                                     L+ ++ + ++ N  +   P   ++L  L+ L+ +
Sbjct: 478 G-------------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST 697
            N  T  +  N  +  ++E LD S NQL    P    +LS    L++++N    E   ST
Sbjct: 513 SNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELST 567

Query: 698 QLQSFGGSSFA----DNDLCGAPLPNCTKKSVLVTDDQNRIGNEEDGDETDWTLYISMAL 753
            +     ++        D+      + +  S+     +    +EE+  ++       +  
Sbjct: 568 FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEG--CDEEEVLKSLKFSLFIVCT 625

Query: 754 GFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKC 792
             +  F   I  +   R + +       RL      +  
Sbjct: 626 VTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGT 664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (392), Expect = 4e-39
 Identities = 116/567 (20%), Positives = 204/567 (35%), Gaps = 58/567 (10%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
                 L  LQ L+L      L  D  +    L  L+ L + S  +            L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFLHPDAF--QGLF 97

Query: 63  SLKELKLSFCKLHHF--PPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSF 119
            L EL+L FC L           N  +LT LDLS+N+ +   +    G L SLK +D S 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 120 NQFNSVVPGWLSKL--NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP 177
           NQ   V    L  L    L F SL +N L   +S    + +   + ++L   D  G    
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFK 237
                     +FS   +            FS  +A+ +     G   I     N      
Sbjct: 218 VD-----ITGNFSNAISKSQ--------AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 238 --GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
              +  LDLS+  +          + +L+ L+L+ N++N  +++  F  L  L     + 
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSY 323

Query: 296 NSLIFKINPNWVPPF-QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF 354
           N  + ++  +      ++  + ++   +        +  +KL  L +    ++       
Sbjct: 324 NL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------T 376

Query: 355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG-SIFHLICQGEN 413
            + I     + +SGN++          ++P +    ++  LS N L    I + + +   
Sbjct: 377 IHFIPSIPDIFLSGNKL---------VTLPKINLTANLIHLSENRLENLDILYFLLR--- 424

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNW-PRLRMLNLRNNNFTGSLPMSI-----GTLSSLM 467
              +++   L++N FS    D   +  P L  L L  N    +    +       LS L 
Sbjct: 425 -VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 468 SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG 527
            L L +N L+ + P  F++ T L  L +  N L   +        + L IL++  N+   
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND--LPANLEILDISRNQLLA 540

Query: 528 DFPIQLCRLASLQILDVAYNNLSGTIP 554
                     SL +LD+ +N       
Sbjct: 541 ---PNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (392), Expect = 4e-39
 Identities = 111/628 (17%), Positives = 197/628 (31%), Gaps = 116/628 (18%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
                          Q+P     L + + L LSFN   +V       L  L+ L L S  
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 146 LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEIL 204
               I      NL +++ L L  +               K+       F  L        
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSS---------------KIYFLHPDAFQGLFH------ 98

Query: 205 GIFSACVANELESLDLGSCQIFGHM--TNQLGRFKGLNFLDLS-NTTMDGSIPLSLGQIA 261
                     L  L L  C +   +         K L  LDLS N      +  S G++ 
Sbjct: 99  ----------LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148

Query: 262 NLEYLDLSKNELNGTVSEIHFVNLT--KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRS 319
           +L+ +D S N++   V E     L    L  F    NSL  +++ +W             
Sbjct: 149 SLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP------- 200

Query: 320 CRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFD 379
                           L  L +S    +  I   F N+I +    ++             
Sbjct: 201 -----------FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH-------- 241

Query: 380 SPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNW 439
              M       +I D   N  +G              ++    LS           +   
Sbjct: 242 --IMGAGFGFHNIKDPDQNTFAGLA----------RSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
             L++LNL  N        +   L +L  LNL  N L  +  ++F     +  +D+ +N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           +   I     +   +L  L+LR N         +  + S+  + ++ N L  T+P+   N
Sbjct: 350 I-AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPK--IN 400

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
            +A     S ++  ++                    FL+    +  L     +++N FS 
Sbjct: 401 LTANLIHLSENRLENLDILY----------------FLLRVPHLQIL----ILNQNRFSS 440

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNIGV-----MRSIESLDFSANQLSGYIPQSM 673
               +  +    L+ L    N+        +       +  ++ L  + N L+   P   
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 674 SNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           S+L+ L  L+L++N L   +  +    +
Sbjct: 501 SHLTALRGLSLNSNRLT-VLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 3e-26
 Identities = 73/497 (14%), Positives = 147/497 (29%), Gaps = 95/497 (19%)

Query: 11  NLQYLDLSGYNFK----------LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            L+ LD+SG  +           +       L     +        N+     +     +
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
             S++ L LS   +             L  L+L+ N+           L +L+ L+LS+N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
               +       L  + ++ LQ N +   I     + L  +QTL L  N           
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN----------- 372

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
                              ++ I  I S      +  + L   ++       L      N
Sbjct: 373 ------------------ALTTIHFIPS------IPDIFLSGNKLVTLPKINL----TAN 404

Query: 241 FLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299
            + LS   ++   I   L ++ +L+ L L++N  +    +        L       N L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 300 FKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIF 359
                  +      GL                    L  LY++   +++ +P   ++ + 
Sbjct: 465 L-AWETELCWDVFEGL------------------SHLQVLYLNHNYLNS-LPPGVFSHLT 504

Query: 360 QYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIE 419
               L+++ N++             L  NL  I D+S N L            +   ++ 
Sbjct: 505 ALRGLSLNSNRL------TVLSHNDLPANL-EILDISRNQLLAPN-------PDVFVSLS 550

Query: 420 FFQLSKNHFSGEIPDCW-MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478
              ++ N F  E      +NW     + +               +  +   +     L  
Sbjct: 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPP---------ADIYCVYPDSFSGVSLFS 601

Query: 479 IIPTSFNNFTILEALDM 495
           +     +   +L++L  
Sbjct: 602 LSTEGCDEEEVLKSLKF 618

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  156 bits (395), Expect = 2e-40
 Identities = 105/540 (19%), Positives = 189/540 (35%), Gaps = 51/540 (9%)

Query: 10  SNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
            + + LDLS    + L + +         L+ L +S   +    D      SL  L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLI 82

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VP 127
           L+   +      + +  SSL  L   E          +G+L +LK L+++ N   S  +P
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 128 GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQ----TLLLSGNDELGGKIPTSFGRF 183
            + S L +LE L L SN++Q +I    L  L  +     +L LS N      I     + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKE 199

Query: 184 CKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFL 242
            +L   +      S ++ +           E+  L LG  +  G++        +GL  L
Sbjct: 200 IRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 243 DLS------NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
            +              I      + N+    L    +       +      L        
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK-IPRRFW 355
                   +      L  L   S + G  F         L  L +S   +S K    +  
Sbjct: 318 QFPTLKLKS------LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS----GSIFHLICQG 411
                  +L++S N +      F    +  + +L    D  ++ L      S+F      
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHL----DFQHSNLKQMSEFSVFLS---- 419

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLN 470
               +N+ +  +S  H        +     L +L +  N+F  +    I   L +L  L+
Sbjct: 420 ---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 471 LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
           L   +L  + PT+FN+ + L+ L+M  N+L  ++P  + +R + L  + L +N +    P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  153 bits (388), Expect = 2e-39
 Identities = 101/505 (20%), Positives = 176/505 (34%), Gaps = 41/505 (8%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            S K L LSF  L H    S  +F  L  LDLS  E Q        +L+ L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             S+  G  S L+ L+ L      L  ++ +  + +L +++ L ++ N     K+P  F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L+        +       L +    +     SLDL    +      Q G FK +  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPM---NFIQPGAFKEIRL 202

Query: 242 --LDLSNTTMDGSIP-LSLGQIANLEYLDLSKNELNG-----TVSEIHFVNLTKLVTFRA 293
             L L N     ++    +  +A LE   L   E           +     L  L T   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEE 261

Query: 294 NGNSLIFKINPNWVPPFQ----LTGLGVRSCRLGPRFPL-WLQSQKKLNDLYISSTRISA 348
              + +     + +  F     ++   + S  +       +    + L  +     +   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 349 KIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLI 408
              +           L  + N+  G         +P +  L    DLS N LS       
Sbjct: 322 LKLKSLKR-------LTFTSNKG-GNAFSEV--DLPSLEFL----DLSRNGLS----FKG 363

Query: 409 CQGENFSK--NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSS 465
           C  ++     ++++  LS N     +   ++   +L  L+ +++N       S+  +L +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 466 LMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKF 525
           L+ L++ +          FN  + LE L M  N    N    +      L  L+L   + 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 526 HGDFPIQLCRLASLQILDVAYNNLS 550
               P     L+SLQ+L++A N L 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (350), Expect = 2e-34
 Identities = 107/507 (21%), Positives = 182/507 (35%), Gaps = 58/507 (11%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
                +LS+L  L L+  N  + +  +   SGLS L+ L     NL+   +    I  L 
Sbjct: 69  DGAYQSLSHLSTLILT-GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLK 124

Query: 63  SLKELKLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY----LDL 117
           +LKEL ++   +  F  P   +N ++L  LDLS N+ Q    + L  L  +      LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS-----GNDEL 172
           S N  N + PG   ++  L  L+L++N    N+    ++ L  ++   L          L
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 173 GGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQ 232
                ++    C L         L   + +I+ +F+      + S  L S  I       
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTI--ERVKD 299

Query: 233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
                G   L+L N        L L    +L+ L  + N+     +    V+L  L    
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGG---NAFSEVDLPSLEFLD 353

Query: 293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
            + N L FK                                  L  L +S   +   +  
Sbjct: 354 LSRNGLSFK----------------------GCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGE 412
            F     Q   L+   + +          S+  +  L    D+S+       F+ I  G 
Sbjct: 391 NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYL----DISHTHTR-VAFNGIFNGL 444

Query: 413 NFSKNIEFFQLSKNHFSGEI-PDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           +   ++E  +++ N F     PD +     L  L+L         P +  +LSSL  LN+
Sbjct: 445 S---SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGEN 498
            +N+L  +    F+  T L+ + +  N
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (332), Expect = 3e-32
 Identities = 113/609 (18%), Positives = 195/609 (32%), Gaps = 120/609 (19%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
            T    E  F  +IP  L    S K LDLSFN    +         +L+ L L    +Q 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65

Query: 149 NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIF 207
            I     ++L+ + TL+L+GN                ++S + G F+ LS          
Sbjct: 66  TIEDGAYQSLSHLSTLILTGN---------------PIQSLALGAFSGLSS--------- 101

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS-NTTMDGSIPLSLGQIANLEYL 266
                  L+ L      +       +G  K L  L+++ N      +P     + NLE+L
Sbjct: 102 -------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINP-NWVPPFQLTGLGVRSCRLGPR 325
           DLS N++  ++       L ++        SL   +NP N++ P     +          
Sbjct: 155 DLSSNKIQ-SIYCTDLRVLHQM---PLLNLSLDLSLNPMNFIQPGAFKEI---------- 200

Query: 326 FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPL 385
                    +L+ L + +   S  + +     +       +   + +      +      
Sbjct: 201 ---------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE-FRNEGNLEKFDKSA 250

Query: 386 VTNLGSIFDLSNNALSGSIFHL-ICQGENFSKNIEFFQLSKNHFSGEIPD--CWMNWPRL 442
           +  L ++            +   I    N   N+  F L        + D      W  L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHL 309

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL-V 501
            ++N +   F          L SL  L   +N+       S  +   LE LD+  N L  
Sbjct: 310 ELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSF 361

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
               +      + L  L+L  N            L  L+ LD  ++NL            
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF------ 414

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
                                               +  ++++ L    DIS  +     
Sbjct: 415 ---------------------------------SVFLSLRNLIYL----DISHTHTRVAF 437

Query: 622 PVEVTNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLN 680
                 L  L+ L  + N F      +I   +R++  LD S  QL    P + ++LS L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 681 YLNLSNNNL 689
            LN+++N L
Sbjct: 498 VLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (293), Expect = 2e-27
 Identities = 86/493 (17%), Positives = 154/493 (31%), Gaps = 92/493 (18%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           +    +G+L  L+ L+++ +N                     I S  L +        ++
Sbjct: 115 LENFPIGHLKTLKELNVA-HN--------------------LIQSFKLPEY------FSN 147

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLT----TLDLSENEFQGQIPSRLGNLTSLKYLD 116
           L +L+ L LS  K+             +     +LDLS N     I         L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 117 LSFNQFN-SVVPGWLSKLNDLEFLSLQSNRLQGN-----ISSLGLENLTSIQT--LLLSG 168
           L  N  + +V+   +  L  LE   L     +            LE L ++      L+ 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 169 NDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH 228
            D     I   F     + SFS     + +       +         + L+L +C+    
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQF 319

Query: 229 MTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG-TVSEIHFVNLTK 287
            T +L   K L F           + L      +LE+LDLS+N L+            T 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 288 LVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS 347
           L     + N +I                                  ++L  L    + + 
Sbjct: 375 LKYLDLSFNGVI-------------------------TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 348 AKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHL 407
                  + S+    +L+IS               +  +  L     ++ N+   +    
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVL----KMAGNSFQENF--- 461

Query: 408 ICQGENFSK--NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLS 464
               + F++  N+ F  LS+       P  + +   L++LN+ +N    S+P  I   L+
Sbjct: 462 --LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLT 518

Query: 465 SLMSLNLRNNRLS 477
           SL  + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 55/278 (19%), Positives = 86/278 (30%), Gaps = 64/278 (23%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
            L +L+ L  +                L  L+ L +S   LS             SLK L
Sbjct: 323 KLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR--LGNLTSLKYLDLSFNQFNSV 125
            LSF  +      +      L  LD   +  + Q+       +L +L YLD+S       
Sbjct: 379 DLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
             G  + L+ LE L +  N  Q N        L ++  L LS                 +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC---------------Q 481

Query: 186 LKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244
           L+  S   F +LS                 L+ L++ S        NQL       F  L
Sbjct: 482 LEQLSPTAFNSLSS----------------LQVLNMAS--------NQLKSVPDGIFDRL 517

Query: 245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF 282
           ++                L+ + L  N  + +   I +
Sbjct: 518 TS----------------LQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 1e-17
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +      L  L++LD   ++        S    L  L +L IS  +   A + +   N L
Sbjct: 388 MSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL 444

Query: 62  PSLKELKLSFCKLH-HFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
            SL+ LK++      +F P       +LT LDLS+ + +   P+   +L+SL+ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
           Q  SV  G   +L  L+ + L +N    +   +
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 27/90 (30%)

Query: 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS 666
            + +D+S N           +   LQ L+ S              +  + +L  + N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 667 GYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
                + S LS L  L     NL       
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFP 119

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 30/81 (37%)

Query: 610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI 669
           +D+S+            +L  L +L  + N            + S++ L      L+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 670 PQSMSNLSFLNYLNLSNNNLN 690
              + +L  L  LN+++N + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ 137

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 2e-34
 Identities = 102/639 (15%), Positives = 188/639 (29%), Gaps = 139/639 (21%)

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
           S  +              P   S   +++ +LDLS N+        L    +L+ L L  
Sbjct: 3   SCDASGVCDGRSRSFTSIP---SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
           ++ N++       L  LE L L  N L  ++SS     L+S++ L L GN          
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGN---------- 108

Query: 180 FGRFCKLKSFSTG--FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQ-LGRF 236
                  ++      F NL+                 L++L +G+ + F  +        
Sbjct: 109 -----PYQTLGVTSLFPNLTN----------------LQTLRIGNVETFSEIRRIDFAGL 147

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
             LN L++   ++      SL  I ++ +L L  +E    + EI    L+ +        
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDT 206

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN 356
           +L             L    V                KKL       T  S     +   
Sbjct: 207 NL------ARFQFSPLPVDEV------------SSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 357 SIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416
            I +   +      +                 LG      ++ +S             + 
Sbjct: 249 YILELSEVEFDDCTL---------------NGLGDFNPSESDVVSELGKV-------ETV 286

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT-LSSLMSLNLRNNR 475
            I    + + +   ++   +    +++ + + N+     +P S    L SL  L+L  N 
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL 345

Query: 476 LSGII---PTSFNNFTILEALDMGENELVG-NIPTWMGERFSRLIILNLRSNKFHGDFPI 531
           +             +  L+ L + +N L        +      L  L++  N FH   P 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALL 591
                  ++ L+++   +   +  CI                                  
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI---------------------------------- 429

Query: 592 VMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV 651
                          +  +D+S NN      +    L  LQ L  S N     +PD   +
Sbjct: 430 ------------PQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDA-SL 471

Query: 652 MRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
              +  +  S NQL          L+ L  + L  N  +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (346), Expect = 3e-34
 Identities = 96/511 (18%), Positives = 178/511 (34%), Gaps = 44/511 (8%)

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
               ++K L LSF K+ +         ++L  L L  +           +L SL++LDLS
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
            N  +S+   W   L+ L++L+L  N  Q    +    NLT++QTL +   +        
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
            F     L        +L    S+ L         ++  L L   +    +         
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIR-----DIHHLTLHLSESAFLLEIFADILSS 197

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           + +L+L +T +       L        +       +  +++  F  L KL+ +    + +
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEV 256

Query: 299 ---------IFKINPNWVPPFQ---------LTGLGVRSCRLGPRFPLWLQSQKKLNDLY 340
                    +   NP+               +  L +    L           +K+  + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNAL 400
           + ++++   +P  F   +    FL++S N M     K  +       +L     LS N L
Sbjct: 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSL-QTLVLSQNHL 373

Query: 401 SGSIFHLICQGENFSK--NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPM 458
                 +   GE      N+    +S+N F   +PD      ++R LNL +      +  
Sbjct: 374 R----SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 459 SIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIIL 518
            I    +L  L++ NN L             L+ L +  N+L   +P      F  L+++
Sbjct: 428 CI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPDASL--FPVLLVM 478

Query: 519 NLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
            +  N+          RL SLQ + +  N  
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 8e-33
 Identities = 87/517 (16%), Positives = 163/517 (31%), Gaps = 73/517 (14%)

Query: 3   PHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
              L   +NLQ L L       +  D       L  L+HL +S  +LS  S S      L
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDA---FYSLGSLEHLDLSDNHLSSLSSSWF--GPL 97

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSF 119
            SLK L L           S   N ++L TL +   E   +I       LTSL  L++  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
               +     L  + D+  L+L  +     +  +  + L+S++ L L   +    +   S
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN--LARFQFS 214

Query: 180 FGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG- 238
                ++ S           +++    F+  +      L+L   +      N LG F   
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTD--ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 239 ---------------LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV 283
                          +  L +    +   +      +  ++ + +  +++   V      
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 284 NLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISS 343
           +L  L     + N ++ +   N                              L  L +S 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWP---------------------SLQTLVLSQ 370

Query: 344 TRISA--KIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS 401
             + +  K              L+IS N  +        P       +    +LS+  + 
Sbjct: 371 NHLRSMQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWP-----EKM-RFLNLSSTGIR 423

Query: 402 GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG 461
             +   I Q       +E   +S N+         +  PRL+ L +  N    +LP    
Sbjct: 424 -VVKTCIPQ------TLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLP-DAS 470

Query: 462 TLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
               L+ + +  N+L  +    F+  T L+ + +  N
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (305), Expect = 6e-29
 Identities = 83/475 (17%), Positives = 165/475 (34%), Gaps = 45/475 (9%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
                +L +L++LDLS  N  L + + SW   LS LK+L +          + L   +L 
Sbjct: 67  GDAFYSLGSLEHLDLS-DN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLT 123

Query: 63  SLKELKLSFC-KLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           +L+ L++           +  A  +SL  L++     +      L ++  + +L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL--GLENLTSIQTLLLSGN---DELGGKI 176
              ++  +   L+ + +L L+   L     S     E  + ++ L   G+   DE   ++
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 177 PTSFGRFCKLKSFS------TGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT 230
                   +L           G  + +   S+++          +  L +    +F  ++
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 231 NQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL--NGTVSEIHFVNLTKL 288
                 + +  + + N+ +          + +LE+LDLS+N +      +         L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 289 VTFRANGNSLIFKINPNWVPPF----QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISST 344
            T   + N L  +              LT L +         P   Q  +K+  L +SST
Sbjct: 364 QTLVLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 345 RISAKIPRRFWNSIFQY-WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS 403
            I           I Q    L++S N +        S  +P +  L     +S N L   
Sbjct: 421 GIR-----VVKTCIPQTLEVLDVSNNNL-----DSFSLFLPRLQEL----YISRNKLK-- 464

Query: 404 IFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPM 458
              L     +    +   ++S+N         +     L+ + L  N +  S P 
Sbjct: 465 --TL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 91/619 (14%), Positives = 184/619 (29%), Gaps = 171/619 (27%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
            +    D     F   IPS L    ++K LDLSFN+   +  G L    +L+ L L+S+R
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 146 LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEIL 204
           +   I      +L S++ L LS N                L S S+  F  LS       
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDN---------------HLSSLSSSWFGPLSS------ 99

Query: 205 GIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLE 264
                     L+ L+L                                +      + NL+
Sbjct: 100 ----------LKYLNLMGNPY-----------------------QTLGVTSLFPNLTNLQ 126

Query: 265 YLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
            L +   E    +  I F  LT L        S +                         
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQS------------------ 167

Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
                L+S + ++ L +  +  +  +   F + +    +L +    +     +F    +P
Sbjct: 168 -----LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA----RFQFSPLP 217

Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRM 444
           +      +  L+           +   E+F++ ++  +        E  DC        +
Sbjct: 218 VDEVSSPMKKLAFR-------GSVLTDESFNELLKLLRYILELSEVEFDDC----TLNGL 266

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
            +   +       +      ++  L++    L   + T ++    ++ + +  ++     
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK----- 321

Query: 505 PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA 564
                       +  +  +            L SL+ LD++ N +     +      A  
Sbjct: 322 ------------VFLVPCSFSQH--------LKSLEFLDLSENLMVEEYLKNSACKGA-- 359

Query: 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFS--GEVP 622
                                                     ++ + +S+N+     +  
Sbjct: 360 ---------------------------------------WPSLQTLVLSQNHLRSMQKTG 380

Query: 623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYL 682
             +  L+ L SL+ S N F   +PD+      +  L+ S+  +   +         L  L
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC--IPQTLEVL 436

Query: 683 NLSNNNLNGEIPSSTQLQS 701
           ++SNNNL+       +LQ 
Sbjct: 437 DVSNNNLDSFSLFLPRLQE 455

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 3e-17
 Identities = 53/346 (15%), Positives = 107/346 (30%), Gaps = 64/346 (18%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            +     NL+NLQ L +               +GL+ L  L I +++L         + S
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKS 170

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-------------------- 100
           +  +  L L   +      + +   SS+  L+L +                         
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 101 --------------QIPSRLGNLTSLKYLDLSFNQFNSVVP---GWLSKLNDLEFLSLQS 143
                         ++   +  L+ +++ D + N      P     +S+L  +E ++++ 
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 144 NRLQGN----ISSLGLENLTSIQTLLLSGN--DELGGKIPTSFGRFCKLKSFSTGFTNLS 197
             +         S     L  ++ + +  +    +             L        +LS
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL--------DLS 342

Query: 198 Q-DISEILGIFSACVAN--ELESLDLGSCQI--FGHMTNQLGRFKGLNFLDLSNTTMDGS 252
           +  + E     SAC      L++L L    +         L   K L  LD+S  T    
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HP 401

Query: 253 IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           +P S      + +L+LS   +      +       L     + N+L
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 48/264 (18%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
               + + R+ +FT S+P  +   +++ SL+L  N+++ I          L+ L +  + 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           +   I          L  L+L  N            L+SL+ L++  N    T+      
Sbjct: 62  I-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVT--- 116

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                                                     ++  L     I       
Sbjct: 117 -----------------------------------SLFPNLTNLQTL----RIGNVETFS 137

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSF 678
           E+       L  L  L             ++  +R I  L    ++ +  +      LS 
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 679 LNYLNLSNNNLNGEIPSSTQLQSF 702
           + YL L + NL     S   +   
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEV 221

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 1e-33
 Identities = 98/549 (17%), Positives = 172/549 (31%), Gaps = 107/549 (19%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              L+      L   N           + L  +  L    + +     S+  +  L +L 
Sbjct: 20  DTALAEKMKTVLGKTNVT----DTVSQTDLDQVTTLQADRLGIK----SIDGVEYLNNLT 71

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
           ++  S  +L    PL   N + L  + ++ N+     P  L NLT+L  L L  NQ   +
Sbjct: 72  QINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
            P  L  L +L  L L SN +  +IS+L    LTS+Q L                     
Sbjct: 128 DP--LKNLTNLNRLELSSNTIS-DISALS--GLTSLQQLSFGNQ---------------- 166

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
             +      NL+                 LE LD+ S ++     + L +   L  L  +
Sbjct: 167 -VTDLKPLANLTT----------------LERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPN 305
           N  +    PL  G + NL+ L L+ N+L    +     +LT L       N +       
Sbjct: 208 NNQISDITPL--GILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP-- 260

Query: 306 WVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN 365
                                   L    KL +L + + +IS   P     ++     L 
Sbjct: 261 ------------------------LSGLTKLTELKLGANQISNISPLAGLTAL---TNLE 293

Query: 366 ISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK 425
           ++ NQ+       D   +  + NL +   L  N +S           +    ++      
Sbjct: 294 LNENQLE------DISPISNLKNL-TYLTLYFNNISDIS------PVSSLTKLQRLFFYN 340

Query: 426 NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFN 485
           N  S        N   +  L+  +N  +   P  +  L+ +  L L +   +        
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 486 NFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVA 545
           N +I   +      L+   P  + +        ++  N             +    +   
Sbjct: 397 NVSIPNTVKNVTGALI--APATISD-GGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKG 452

Query: 546 YNNLSGTIP 554
               SGT+ 
Sbjct: 453 TTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (284), Expect = 1e-26
 Identities = 92/506 (18%), Positives = 155/506 (30%), Gaps = 128/506 (25%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
             +L    +  L    +      +  +   +TTL         +    +  L +L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL--GIKSIDGVEYLNNLTQINF 75

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP 177
           S NQ   + P  L  L  L  + + +N++  +I+ L   NLT++  L L  N        
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLA--NLTNLTGLTLFNN-------- 122

Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFK 237
                  ++        NL+                 L  L+L S  I     + L    
Sbjct: 123 -------QITDIDP-LKNLTN----------------LNRLELSSNTI--SDISALSGLT 156

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
            L  L   N   D      L  +  LE LD+S N+++          LT L +  A  N 
Sbjct: 157 SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ 210

Query: 298 LIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
            I  I P                         L     L++L ++  ++   I       
Sbjct: 211 -ISDITP-------------------------LGILTNLDELSLNGNQLK-DIG------ 237

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG--SIFHLICQGENFS 415
                   ++                   TNL +  DL+NN +S    +  L        
Sbjct: 238 -------TLASL-----------------TNL-TDLDLANNQISNLAPLSGL-------- 264

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
             +   +L  N  S   P        L  L L  N      P  I  L +L  L L  N 
Sbjct: 265 TKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           +S I P   ++ T L+ L    N++  ++ +      + +  L+   N+        L  
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKV-SDVSSL--ANLTNINWLSAGHNQISD--LTPLAN 373

Query: 536 LASLQILDVAYNNLSGTIPRCINNFS 561
           L  +  L +     +        N S
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.0 bits (237), Expect = 9e-21
 Identities = 101/606 (16%), Positives = 173/606 (28%), Gaps = 175/606 (28%)

Query: 87  SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
            L +  ++++    QI +    L       L        V    + L+ +  L       
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-- 56

Query: 147 QGNISSL-GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILG 205
              I S+ G+E L ++  +  S N               +L   +    NL++       
Sbjct: 57  --GIKSIDGVEYLNNLTQINFSNN---------------QLTDIT-PLKNLTK------- 91

Query: 206 IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEY 265
                    L  + + + QI                          +    L  + NL  
Sbjct: 92  ---------LVDILMNNNQI--------------------------ADITPLANLTNLTG 116

Query: 266 LDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRSCRLGP 324
           L L  N++          NLT L     + N++      + +     LT L   S     
Sbjct: 117 LTLFNNQITDI---DPLKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV 167

Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
                L +   L  L ISS ++S                               D   + 
Sbjct: 168 TDLKPLANLTTLERLDISSNKVS-------------------------------DISVLA 196

Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRM 444
            +TNL S+   +NN +S               N++   L+ N           +   L  
Sbjct: 197 KLTNLESL-IATNNQISDIT------PLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 247

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
           L+L NN  +   P  +  L+ L  L L  N++S I P      T L  L++ EN+L    
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303

Query: 505 PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA 564
           P         L  L L  N      P+    L  LQ L    N +S      +++ +   
Sbjct: 304 PI---SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD-----VSSLAN-- 351

Query: 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVE 624
                                                  L  +  +    N  S   P+ 
Sbjct: 352 ---------------------------------------LTNINWLSAGHNQISDLTPLA 372

Query: 625 VTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNL 684
             NL  +  L  +   +T   P N     SI +   +        P ++S+       ++
Sbjct: 373 --NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDI 428

Query: 685 SNNNLN 690
           + N  +
Sbjct: 429 TWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 90/452 (19%), Positives = 169/452 (37%), Gaps = 77/452 (17%)

Query: 256 SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ---- 311
           +   +A      L K  +  TVS+     +T L   R    S+            +    
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI---------DGVEYLNN 69

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
           LT +   + +L    P  L++  KL D+ +++ +I+   P     ++     L +  NQ+
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG---LTLFNNQI 124

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFFQLSKNHFS 429
                  D   +  +TNL +  +LS+N +S   ++  L         +++      N  +
Sbjct: 125 ------TDIDPLKNLTNL-NRLELSSNTISDISALSGL--------TSLQQLSFG-NQVT 168

Query: 430 GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI 489
              P    N   L  L++ +N  +      +  L++L SL   NN++S I P      T 
Sbjct: 169 DLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           L+ L +  N+L  +I T      + L  L+L +N+        L  L  L  L +  N +
Sbjct: 223 LDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI 277

Query: 550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG 609
           S      I+  + +           +    L + ++ +          +   S L  +  
Sbjct: 278 SN-----ISPLAGL---------TALTNLELNENQLED----------ISPISNLKNLTY 313

Query: 610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI 669
           + +  NN S   PV   +L  LQ L F  N  +     ++  + +I  L    NQ+S   
Sbjct: 314 LTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369

Query: 670 PQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           P  ++NL+ +  L L++        +     S
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 90/522 (17%), Positives = 163/522 (31%), Gaps = 80/522 (15%)

Query: 154 GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVAN 213
               L      +L   +        S     ++ +       +   I  +         N
Sbjct: 19  TDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK-SIDGVEY------LN 68

Query: 214 ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
            L  ++  + Q+       L     L  + ++N  +    P  L  + NL  L L  N++
Sbjct: 69  NLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

Query: 274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRSCRLGPRFPLWLQS 332
                     NLT L     + N++      + +     LT L   S          L +
Sbjct: 125 TDI---DPLKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQVTDLKPLAN 175

Query: 333 QKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSI 392
              L  L ISS ++S  I       +     L  + NQ+       D   + ++TNL   
Sbjct: 176 LTTLERLDISSNKVS-DIS--VLAKLTNLESLIATNNQIS------DITPLGILTNL-DE 225

Query: 393 FDLSNNALSG--SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN 450
             L+ N L    ++  L         N+    L+ N  S   P       +L  L L  N
Sbjct: 226 LSLNGNQLKDIGTLASL--------TNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
             +   P  +  L++L +L L  N+L  I P   +N   L  L +  N +    P     
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV---S 328

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570
             ++L  L   +NK        L  L ++  L   +N +S   P  + N + +     +D
Sbjct: 329 SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384

Query: 571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG 630
           Q+      +                      SI N      +     +   P  +++   
Sbjct: 385 QAWTNAPVNYKAN-----------------VSIPNT-----VKNVTGALIAPATISDGGS 422

Query: 631 LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
               + ++NL +    +         ++       SG + Q 
Sbjct: 423 YTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 70/313 (22%), Positives = 116/313 (37%), Gaps = 54/313 (17%)

Query: 394 DLSNNALSG--SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
           + SNN L+    + +L          +    ++ N  +   P    N   L  L L NN 
Sbjct: 74  NFSNNQLTDITPLKNL--------TKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQ 123

Query: 452 FTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511
            T   P  +  L++L  L L +N +S I     +  T L+ L  G N++    P      
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPL---AN 175

Query: 512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQ 571
            + L  L++ SNK        L +L +L+ L    N +S   P  +   + +        
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL-------D 224

Query: 572 SNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGL 631
              +    L D   +                 L  +  +D++ N  S   P+    L  L
Sbjct: 225 ELSLNGNQLKDIGTLAS---------------LTNLTDLDLANNQISNLAPLS--GLTKL 267

Query: 632 QSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691
             L    N  +      +  + ++ +L+ + NQL    P  +SNL  L YL L  NN++ 
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 692 EIPSS--TQLQSF 702
             P S  T+LQ  
Sbjct: 324 ISPVSSLTKLQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 61/227 (26%)

Query: 461 GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNL 520
           G L S      ++  ++ I               +G+  +   +         ++  L  
Sbjct: 1   GPLGSA--TITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQA 53

Query: 521 RSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL 580
                       +  L +L  ++ + N L+   P  + N                     
Sbjct: 54  DRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKN--------------------- 88

Query: 581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL 640
                                  L  +  I ++ N  +   P+   NL  L  L    N 
Sbjct: 89  -----------------------LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQ 123

Query: 641 FTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687
            T    D +  + ++  L+ S+N +S     ++S L+ L  L+  N 
Sbjct: 124 ITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 2e-29
 Identities = 69/346 (19%), Positives = 133/346 (38%), Gaps = 43/346 (12%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
             +L+      L   +       +     L  +  L ++   ++        I  L +L+
Sbjct: 18  DADLAEGIRAVLQKASVT----DVVTQEELESITKLVVAGEKVASIQG----IEYLTNLE 69

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L L+  ++    PLS  N   LT L +  N+      S L NLT+L+ L L+ +  + +
Sbjct: 70  YLNLNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI 125

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
            P  L+ L  +  L+L +N    ++S L   N+T +  L ++ + ++    P        
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTES-KVKDVTP--IANLTD 178

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
           L S S  +  +  DIS +  +        L        QI       +     LN L + 
Sbjct: 179 LYSLSLNYNQIE-DISPLASL------TSLHYFTAYVNQI--TDITPVANMTRLNSLKIG 229

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPN 305
           N  +    P  L  ++ L +L++  N+++  ++ +   +LTKL       N +      +
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVK--DLTKLKMLNVGSNQI------S 278

Query: 306 WVPPF----QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS 347
            +       QL  L + + +LG      +     L  L++S   I+
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 1e-26
 Identities = 78/437 (17%), Positives = 154/437 (35%), Gaps = 93/437 (21%)

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
              L      ++   P +  + +      L +      +      L S+  L ++  +  
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRF 183
           S+    +  L +LE+L+L  N++        L NL  +  L +  N        ++    
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTN---KITDISALQNL 109

Query: 184 CKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243
             L+       N+S DIS +  +       ++ SL+LG+      ++  L    GLN+L 
Sbjct: 110 TNLRELYLNEDNIS-DISPLANL------TKMYSLNLGANHNLSDLSP-LSNMTGLNYLT 161

Query: 244 LSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303
           ++ + +    P+    + +L  L L+ N++          +LT L  F A  N       
Sbjct: 162 VTESKVKDVTPI--ANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVN------- 209

Query: 304 PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWF 363
                  Q+T +              + +  +LN L I + +I+   P     ++ Q  +
Sbjct: 210 -------QITDITP------------VANMTRLNSLKIGNNKITDLSP---LANLSQLTW 247

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQL 423
           L I  NQ+   +          +T L  + ++ +N +S               +I     
Sbjct: 248 LEIGTNQI-SDINAVKD-----LTKLKML-NVGSNQIS---------------DISVLN- 284

Query: 424 SKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTS 483
                         N  +L  L L NN         IG L++L +L L  N ++ I P  
Sbjct: 285 --------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 484 FNNFTILEALDMGENEL 500
             + + +++ D     +
Sbjct: 329 LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 3e-25
 Identities = 57/268 (21%), Positives = 110/268 (41%), Gaps = 50/268 (18%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           L NL+ +  L+L   N  L    +S LS ++ L +L ++   +   +     I +L  L 
Sbjct: 128 LANLTKMYSLNLG-ANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLY 180

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L L++ ++    PL+  + +SL       N+     P  + N+T L  L +  N+   +
Sbjct: 181 SLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
            P  L+ L+ L +L + +N++  +I+   +++LT ++ L +  N               +
Sbjct: 237 SP--LANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSN---------------Q 276

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
           +   S    NLSQ                L SL L + Q+       +G    L  L LS
Sbjct: 277 ISDIS-VLNNLSQ----------------LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNEL 273
              +    PL+   ++ ++  D +   +
Sbjct: 320 QNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 80/469 (17%), Positives = 154/469 (32%), Gaps = 144/469 (30%)

Query: 88  LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
             TL           P    +L       L       VV     +L  +  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIF 207
            +I   G+E LT+++ L L+GN               ++   S   +NL +         
Sbjct: 58  -SIQ--GIEYLTNLEYLNLNGN---------------QITDIS-PLSNLVK--------- 89

Query: 208 SACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD 267
                  L +L +G+ +I                          +   +L  + NL  L 
Sbjct: 90  -------LTNLYIGTNKI--------------------------TDISALQNLTNLRELY 116

Query: 268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFP 327
           L+++ ++         NLTK+ +     N  +  ++P                       
Sbjct: 117 LNEDNISDI---SPLANLTKMYSLNLGANHNLSDLSP----------------------- 150

Query: 328 LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVT 387
             L +   LN L ++ +++   +               I+                   T
Sbjct: 151 --LSNMTGLNYLTVTESKVK-DVT-------------PIANL-----------------T 177

Query: 388 NLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFSGEIPDCWMNWPRLRML 445
           +L S+  L+ N +              +   ++ +F    N  +   P    N  RL  L
Sbjct: 178 DLYSL-SLNYNQIEDI--------SPLASLTSLHYFTAYVNQITDITPVA--NMTRLNSL 226

Query: 446 NLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
            + NN  T   P  +  LS L  L +  N++S I   +  + T L+ L++G N++  +I 
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI-SDIS 281

Query: 506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP 554
                  S+L  L L +N+   +    +  L +L  L ++ N+++   P
Sbjct: 282 VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 1e-21
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 25/224 (11%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
               L N++ L YL ++    K     ++ ++ L+ L  L ++   +      +  + SL
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVK----DVTPIANLTDLYSLSLNYNQIE----DISPLASL 198

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            SL        ++    P++  N + L +L +  N+     P  L NL+ L +L++  NQ
Sbjct: 199 TSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            + +    +  L  L+ L++ SN++  +IS L   NL+ + +L L+ N +LG +     G
Sbjct: 255 ISDINA--VKDLTKLKMLNVGSNQIS-DISVLN--NLSQLNSLFLNNN-QLGNEDMEVIG 308

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQI 225
               L +      +++ DI  +  +      ++++S D  +  I
Sbjct: 309 GLTNLTTLFLSQNHIT-DIRPLASL------SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 8e-21
 Identities = 74/454 (16%), Positives = 140/454 (30%), Gaps = 111/454 (24%)

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
           G   L      ++   P +   +A      L K  +      +    L  +      G  
Sbjct: 1   GAATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEK 55

Query: 298 LIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
            +  I                           ++    L  L ++  +I+   P      
Sbjct: 56  -VASIQG-------------------------IEYLTNLEYLNLNGNQITDISPLSNLVK 89

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS-- 415
           +     L I  N++       D  ++  +TNL  +  L+ + +S             +  
Sbjct: 90  L---TNLYIGTNKI------TDISALQNLTNLREL-YLNEDNISDI--------SPLANL 131

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
             +    L  NH   ++     N   L  L +  +      P  I  L+ L SL+L  N+
Sbjct: 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           +  I P    + T L       N++    P       +RL  L + +NK     P  L  
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595
           L+ L  L++  N +S      IN                                     
Sbjct: 242 LSQLTWLEIGTNQISD-----INAVKD--------------------------------- 263

Query: 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655
                   L  ++ +++  N  S      + NL  L SL  + N       + IG + ++
Sbjct: 264 --------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
            +L  S N ++   P  +++LS ++  + +N  +
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 5e-15
 Identities = 68/372 (18%), Positives = 129/372 (34%), Gaps = 63/372 (16%)

Query: 192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG 251
           G   L+   + I  IF      E     L    +   +T      + +  L ++   +  
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
           SI   +  + NLEYL+L+ N++          NL KL       N              +
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTN--------------K 99

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
           +T +              LQ+   L +LY++   IS   P      ++    LN+  N  
Sbjct: 100 ITDISA------------LQNLTNLRELYLNEDNISDISPLANLTKMYS---LNLGANHN 144

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFS 429
              +    +     +T L +   ++ + +              +   ++    L+ N   
Sbjct: 145 LSDLSPLSN-----MTGL-NYLTVTESKVKDV--------TPIANLTDLYSLSLNYNQIE 190

Query: 430 GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI 489
              P    +   L       N  T   P  +  ++ L SL + NN+++ + P    N + 
Sbjct: 191 DISPLA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           L  L++G N++  +I     +  ++L +LN+ SN+        L  L+ L  L +  N L
Sbjct: 245 LTWLEIGTNQIS-DINAV--KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 550 SGTIPRCINNFS 561
                  I   +
Sbjct: 300 GNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 5e-14
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 46/279 (16%)

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
                  L K   +  +    +    +  L +       S+   I  L++L  LNL  N+
Sbjct: 22  AEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQ 77

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           ++ I P   +N   L  L +G N++  +I     +  + L  L L  +         L  
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKIT-DISAL--QNLTNLRELYLNEDNISD--ISPLAN 130

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDIFYASLGDEKIVEDALLVMK 594
           L  +  L++  N+   +    ++N + +     +  +  D+                   
Sbjct: 131 LTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV------------------- 170

Query: 595 GFLVEYKSILNLV--RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652
                   I NL     + ++ N      P+   +L  L       N  T      +  M
Sbjct: 171 ------TPIANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITD--ITPVANM 220

Query: 653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691
             + SL    N+++   P  ++NLS L +L +  N ++ 
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 7e-13
 Identities = 41/257 (15%), Positives = 84/257 (32%), Gaps = 60/257 (23%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
           +        L+  + T  +      L S+  L +   +++ I        T LE L++  
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNG 75

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557
           N++    P        +L  L + +NK        L  L +L+ L +  +N+S   P   
Sbjct: 76  NQITDISPL---SNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--- 127

Query: 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617
                                                  L     + +L    ++  N+ 
Sbjct: 128 ---------------------------------------LANLTKMYSL----NLGANHN 144

Query: 618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS 677
             ++   ++N+ GL  L  + +         I  +  + SL  + NQ+    P  +++L+
Sbjct: 145 LSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 678 FLNYLNLSNNNLNGEIP 694
            L+Y     N +    P
Sbjct: 200 SLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 40/253 (15%), Positives = 78/253 (30%), Gaps = 60/253 (23%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
              L           P     L+  +   L+   ++ ++         +  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
            +I     E  + L  LNL  N+        L  L  L  L +  N ++      I+   
Sbjct: 57  ASIQGI--EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD-----ISALQ 107

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
            +                                         NL R + ++++N S   
Sbjct: 108 NLT----------------------------------------NL-RELYLNEDNISDIS 126

Query: 622 PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681
           P+   NL  + SLN   N         +  M  +  L  + +++    P  ++NL+ L  
Sbjct: 127 PLA--NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 682 LNLSNNNLNGEIP 694
           L+L+ N +    P
Sbjct: 182 LSLNYNQIEDISP 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 3e-28
 Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 32/306 (10%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           +P  +   +  + LDL     K L+ D     +    L+ L ++   +S         N+
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDE---FASFPHLEELELNENIVSAVEPGAF--NN 78

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSF 119
           L +L+ L L   +L   P       S+LT LD+SEN+    +   +  +L +LK L++  
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGD 137

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
           N    +     S LN LE L+L+   L  +I +  L +L  +  L L     +      S
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL-NINAIRDYS 195

Query: 180 FGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQI-------FGHMTNQ 232
           F R  +LK            ++      +      L SL +  C +         H+   
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTP-----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVY- 249

Query: 233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
                 L FL+LS   +       L ++  L+ + L   +L   V    F  L  L    
Sbjct: 250 ------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 293 ANGNSL 298
            +GN L
Sbjct: 303 VSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 60/298 (20%), Positives = 95/298 (31%), Gaps = 62/298 (20%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
                 LSNL  LD+S  N K+          L  LK L +   +L   S      + L 
Sbjct: 97  LGVFTGLSNLTKLDISE-N-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLN 152

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
           SL++L L  C L   P  + ++   L  L L               L  LK L++S   +
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
              +        +L  LS+    L   +  L + +L  ++ L LS N             
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN------------- 258

Query: 183 FCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              + +        L +                L+ + L           QL   +   F
Sbjct: 259 --PISTIEGSMLHELLR----------------LQEIQLVG--------GQLAVVEPYAF 292

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299
             L+                 L  L++S N+L  T+ E  F ++  L T   + N L 
Sbjct: 293 RGLN----------------YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 5e-22
 Identities = 81/423 (19%), Positives = 135/423 (31%), Gaps = 105/423 (24%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            +    +      F   +P  +   T  + LDL  N+  ++     +    LE L L  N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEI 203
            +   +      NL +++TL L  N               +LK    G FT LS      
Sbjct: 67  IVS-AVEPGAFNNLFNLRTLGLRSN---------------RLKLIPLGVFTGLSN----- 105

Query: 204 LGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANL 263
                      L  LD+          N++       F DL N                L
Sbjct: 106 -----------LTKLDISE--------NKIVILLDYMFQDLYN----------------L 130

Query: 264 EYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323
           + L++  N+L   +S   F  L  L        +L        +P   L+ L        
Sbjct: 131 KSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL------TSIPTEALSHL-------- 175

Query: 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM 383
                       L  L +    I+  I    +  +++   L IS       +     P+ 
Sbjct: 176 ----------HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMT----PNC 220

Query: 384 PLVTNLGSIFDLSNNALS----GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW-MN 438
               NL S+  +++  L+     ++ HL          + F  LS N  S  I       
Sbjct: 221 LYGLNLTSL-SITHCNLTAVPYLAVRHL--------VYLRFLNLSYNPIS-TIEGSMLHE 270

Query: 439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
             RL+ + L         P +   L+ L  LN+  N+L+ +  + F++   LE L +  N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 499 ELV 501
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 8e-19
 Identities = 58/324 (17%), Positives = 109/324 (33%), Gaps = 47/324 (14%)

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
                 LDL    +            +LE L+L++N +   V    F NL  L T     
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
           N L        +P    TGL                    L  L IS  +I   +    +
Sbjct: 90  NRL------KLIPLGVFTGL------------------SNLTKLDISENKIVI-LLDYMF 124

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS----GSIFHLICQG 411
             ++    L +  N +   +       +  +  L     L    L+     ++ HL    
Sbjct: 125 QDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQL----TLEKCNLTSIPTEALSHL---- 175

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNW-PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLN 470
                 +   +L   + +  I D       RL++L + +  +  ++  +     +L SL+
Sbjct: 176 ----HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 471 LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
           + +  L+ +   +  +   L  L++  N +   I   M     RL  + L   +     P
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 531 IQLCRLASLQILDVAYNNLSGTIP 554
                L  L++L+V+ N L+ T+ 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 59/286 (20%), Positives = 98/286 (34%), Gaps = 46/286 (16%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           E          L KN       D + ++P L  L L  N  +   P +   L +L +L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
           R+NRL  I    F   + L  LD+ EN++V  +  +M +    L  L +  N        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALL 591
               L SL+ L +   NL+ +IP      S +                            
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPT--EALSHLH--------------------------- 176

Query: 592 VMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV 651
                         L   + +   N +         L  L+ L  S+  +   +  N   
Sbjct: 177 -------------GL-IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 652 MRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST 697
             ++ SL  +   L+     ++ +L +L +LNLS N ++  I  S 
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 66/302 (21%), Positives = 119/302 (39%), Gaps = 37/302 (12%)

Query: 394 DLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
           DL  N +           + F+   ++E  +L++N  S   P  + N   LR L LR+N 
Sbjct: 38  DLGKNRIK------TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 452 FTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
               +P+ +   LS+L  L++  N++  ++   F +   L++L++G+N+LV  I      
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570
             + L  L L            L  L  L +L + + N++  I      F  +      +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS--FKRLYRLKVLE 206

Query: 571 -QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNL 628
                           +    L            LNL   + I+  N +  VP     +L
Sbjct: 207 ISHWPYL-------DTMTPNCLYG----------LNLTS-LSITHCNLT-AVPYLAVRHL 247

Query: 629 QGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687
             L+ LN SYN  +  I  ++   +  ++ +     QL+   P +   L++L  LN+S N
Sbjct: 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 688 NL 689
            L
Sbjct: 307 QL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 34/329 (10%)

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFF 421
           L++  N++   + + +  S P +  L    +L+ N +S ++     +   F+   N+   
Sbjct: 37  LDLGKNRI-KTLNQDEFASFPHLEEL----ELNENIVS-AV-----EPGAFNNLFNLRTL 85

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481
            L  N         +     L  L++  N     L      L +L SL + +N L  I  
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 482 TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQI 541
            +F+    LE L + +  L  +IPT        LI+L LR    +        RL  L++
Sbjct: 146 RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 542 LDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601
           L++++     T+         +  T  S    ++         +   A+  +        
Sbjct: 205 LEISHWPYLDTMTPNC--LYGLNLTSLSITHCNL-------TAVPYLAVRHLV------- 248

Query: 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFS 661
               L R +++S N  S      +  L  LQ +           P     +  +  L+ S
Sbjct: 249 ---YL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 662 ANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
            NQL+        ++  L  L L +N L 
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 42/260 (16%), Positives = 78/260 (30%), Gaps = 52/260 (20%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
            + R +      F  ++P  I   +    L+L  NR+  +    F +F  LE L++ EN 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           +   +          L  L LRSN+           L++L  LD++ N +   +      
Sbjct: 68  V-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLD--YM 123

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
           F  +                                         NL   +++  N+   
Sbjct: 124 FQDLY----------------------------------------NLKS-LEVGDNDLV- 141

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLS 677
            +     + L  L+ L       T  IP      +  +  L      ++     S   L 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 678 FLNYLNLSNNNLNGEIPSST 697
            L  L +S+      +  + 
Sbjct: 201 RLKVLEISHWPYLDTMTPNC 220

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 8e-28
 Identities = 82/475 (17%), Positives = 159/475 (33%), Gaps = 33/475 (6%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
              L IS   +S+   S   I SL  L+ L +S  ++ +           L  LDLS N+
Sbjct: 23  TTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLE 156
               I        +LK+LDLSFN F+++ +      ++ L+FL L +  L+       + 
Sbjct: 81  LVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE----KSSVL 133

Query: 157 NLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELE 216
            +  +    +                     + S      +      +   S      LE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 217 SLDLGSCQIFGHMT---------NQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD 267
             ++         +             +   L   ++  T       L L     + Y  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 268 LSKNELNG----TVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323
           +S  +L G       +    +L  L   +   +   F  +  +     +           
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM 383
               L          L  S+  ++          + +   L +  NQ+   + K    + 
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQL-KELSKIAEMTT 371

Query: 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLR 443
            +  +L    D+S N++S       C     +K++    +S N  +  I  C    PR++
Sbjct: 372 QM-KSL-QQLDISQNSVSYDEKKGDCSW---TKSLLSLNMSSNILTDTIFRC--LPPRIK 424

Query: 444 MLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
           +L+L +N    S+P  +  L +L  LN+ +N+L  +    F+  T L+ + +  N
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 2e-23
 Identities = 80/482 (16%), Positives = 154/482 (31%), Gaps = 85/482 (17%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
              T L++S+N       S + +L+ L+ L +S N+   +         +LE+L L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 146 LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILG 205
           L      +      +++ L LS N                  +                 
Sbjct: 81  LV----KISCHPTVNLKHLDLSFN---------------AFDA----------------- 104

Query: 206 IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEY 265
                         L  C+ FG+M+        L FL LS T ++     S+  IA+L  
Sbjct: 105 --------------LPICKEFGNMSQ-------LKFLGLSTTHLEK---SSVLPIAHLNI 140

Query: 266 LDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR------- 318
             +          +     L    T   +      K     +     T   +        
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 319 ----SCRLGPRFPLWLQSQKKLNDLYISSTRISAK----IPRRFWNSIFQYWFLNISGNQ 370
                C         LQ+  KL++L +++   +      I +  W++   Y   +IS  +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY--FSISNVK 258

Query: 371 MYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430
           + G +   D           SI  + ++       ++         N+     + +    
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI----YEIFSNMNIKNFTVSGTRM 314

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTS--FNNFT 488
               C         L+  NN  T ++  + G L+ L +L L+ N+L  +   +       
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 489 ILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
            L+ LD+ +N +  +           L+ LN+ SN         L     +++LD+  N 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK 432

Query: 549 LS 550
           + 
Sbjct: 433 IK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 3e-22
 Identities = 93/506 (18%), Positives = 150/506 (29%), Gaps = 73/506 (14%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
                L +S   +         + S L  L +S N  Q    S       L+YLDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
              +          L+ L L  N            N++ ++ L LS              
Sbjct: 81  LVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT------------ 125

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L+  S            +L +         E  D    Q F   +  +       F
Sbjct: 126 ---HLEKSSVLPIAHLNISKVLLVLGE----TYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
             + + ++     L L  I  +   +     L+          L+ L           F 
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 302 INPNWVPPFQLTGLGVRSCRLG-----PRFPLWLQSQKKLNDLYISSTRISAKIPRRF-W 355
                V    +    + + +L        F     S K L+   + S          +  
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS 415
            S        +SG +M   +      S     +L    D SNN L+ ++F       N  
Sbjct: 299 FSNMNIKNFTVSGTRMV-HMLCPSKISP--FLHL----DFSNNLLTDTVFE------NCG 345

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG---TLSSLMSLNLR 472
                                     L  L L+ N     L         + SL  L++ 
Sbjct: 346 H----------------------LTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 473 NNRLSGIIPT-SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
            N +S        +    L +L+M  N L   I   +     R+ +L+L SNK     P 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPK 438

Query: 532 QLCRLASLQILDVAYNNLSGTIPRCI 557
           Q+ +L +LQ L+VA N L  ++P  I
Sbjct: 439 QVVKLEALQELNVASNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 92/608 (15%), Positives = 172/608 (28%), Gaps = 161/608 (26%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
             +D S+N     +P  L        L++S N  + +    +  L+ L  L +  NR+Q 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 149 NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFS 208
            +     +    ++ L LS N               KL   S                  
Sbjct: 59  YLDISVFKFNQELEYLDLSHN---------------KLVKIS--CHPTVN---------- 91

Query: 209 ACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268
                 L+ LDL          N                            ++ L++L L
Sbjct: 92  ------LKHLDLSF--------NAFDALPICKEFG---------------NMSQLKFLGL 122

Query: 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL 328
           S   L     +   + +  L     N + ++  +   +       GL             
Sbjct: 123 STTHL----EKSSVLPIAHL-----NISKVLLVLGETYGEKEDPEGL----------QDF 163

Query: 329 WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTN 388
             +S      +   + +    I      ++      NI           F S    L TN
Sbjct: 164 NTES----LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 389 LG-SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNW-----PRL 442
              S   L+N   + + F  I Q    +  + +F +S     G++     ++       L
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
            +  + ++ F           S++   N   +    +     +  +    LD   N L  
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT- 337

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
                           +                L  L+ L +  N L   + +     + 
Sbjct: 338 ----------------DTVFENCGH--------LTELETLILQMNQLK-ELSKIAEMTTQ 372

Query: 563 MATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622
           M +                                          + +DIS+N+ S +  
Sbjct: 373 MKSL-----------------------------------------QQLDISQNSVSYDEK 391

Query: 623 VEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681
               +  + L SLN S N+ T  I   +     I+ LD  +N++   IP+ +  L  L  
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQE 448

Query: 682 LNLSNNNL 689
           LN+++N L
Sbjct: 449 LNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 51/297 (17%), Positives = 92/297 (30%), Gaps = 61/297 (20%)

Query: 5   QLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSK-ASDSLLVINSLPS 63
           QL   + + Y  +S    +   D   +    + LK L I  V           +     +
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
           +     +         L  +  S    LD S N     +    G+LT L+ L L  NQ  
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 124 SV--VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            +  +    +++  L+ L +  N +  +          S+ +L +S N            
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN------------ 409

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L                       C+   ++ LDL S +I                
Sbjct: 410 ---ILTDTIFR-----------------CLPPRIKVLDLHSNKIK--------------- 434

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
                     SIP  + ++  L+ L+++ N+L  +V +  F  LT L     + N  
Sbjct: 435 ----------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 4/147 (2%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            +    G+L+ L+ L L     K  +      + +  L+ L IS  ++S         + 
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSW 397

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
             SL  L +S   L             +  LDL  N+ +  IP ++  L +L+ L+++ N
Sbjct: 398 TKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           Q  SV  G   +L  L+ + L +N   
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 63/441 (14%), Positives = 141/441 (31%), Gaps = 71/441 (16%)

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
                L++S+N ++  +     ++L+KL     + N              ++  L +   
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHN--------------RIQYLDISVF 65

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQ--MYGGVPKF 378
                     +  ++L  L +S  ++  KI     +       L++S N         +F
Sbjct: 66  ----------KFNQELEYLDLSHNKLV-KIS---CHPTVNLKHLDLSFNAFDALPICKEF 111

Query: 379 DSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMN 438
            +     ++ L  +  LS   L  S    I         +   +        E      N
Sbjct: 112 GN-----MSQLKFL-GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFN 164

Query: 439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
              L ++   N  F   L +S+ T+++L   N++            +    L+       
Sbjct: 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK--- 221

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN 558
                         S L + N+ +        +QL    ++    ++   L G +     
Sbjct: 222 -------------LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD---- 264

Query: 559 NFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFS 618
            F     + +S ++  I           +  +            I + +   + + +   
Sbjct: 265 -FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY----------EIFSNMNIKNFTVSGTR 313

Query: 619 GEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS--GYIPQSMSNL 676
               +  + +     L+FS NL T  + +N G +  +E+L    NQL     I +  + +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 677 SFLNYLNLSNNNLNGEIPSST 697
             L  L++S N+++ +     
Sbjct: 374 KSLQQLDISQNSVSYDEKKGD 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 4e-27
 Identities = 96/549 (17%), Positives = 175/549 (31%), Gaps = 121/549 (22%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +P +  N+ +      +                    ++    +    + + S L     
Sbjct: 26  MPVEAENVKSKTEYYNAWSE---------------WERNAPPGNGEQREMAVSRLRDCLD 70

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
               EL+L+   L   P L       L +L  S N    ++P    +L SL   + +   
Sbjct: 71  RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            + + P        LE+L + +N+L+  +  L   N + ++ + +  N            
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE-KLPELQ--NSSFLKIIDVDNN------------ 163

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               LK       +                   LE +  G+ Q+      +L     L  
Sbjct: 164 ---SLKKLPDLPPS-------------------LEFIAAGNNQL--EELPELQNLPFLTA 199

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           +   N ++   +P       +LE +    N L   + E+   NL  L T  A+ N L  K
Sbjct: 200 IYADNNSLK-KLP---DLPLSLESIVAGNNILE-ELPELQ--NLPFLTTIYADNNLL--K 250

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY 361
             P+  P   L  L VR   L    P   QS   L+      + +S   P     +++  
Sbjct: 251 TLPDLPP--SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-----NLYY- 301

Query: 362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421
             LN S N++             L  +L    ++SNN L   +  L          +E  
Sbjct: 302 --LNASSNEI--------RSLCDLPPSL-EELNVSNNKLI-ELPALPP-------RLERL 342

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481
             S NH + E+P+   N   L+ L++  N      P    ++  L   +         +P
Sbjct: 343 IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAE-----VP 392

Query: 482 TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQI 541
               N   L+ L +  N L    P         +  L + S +    +         L+ 
Sbjct: 393 ELPQN---LKQLHVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 542 LDVAYNNLS 550
               +++  
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 9e-22
 Identities = 92/494 (18%), Positives = 163/494 (32%), Gaps = 89/494 (18%)

Query: 77  FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDL 136
           F    + + + L       +    ++P    N+ S      +++++    P    +  ++
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 137 EFLSLQSNRLQG----NISSLGL----ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188
               L+    +      +++LGL    E    +++L+ S N  L  ++P        L  
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN-SL-TELPELPQSLKSLLV 118

Query: 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSN 246
            +     LS                 LE L + + Q+        +L     L  +D+ N
Sbjct: 119 DNNNLKALSDLPP------------LLEYLGVSNNQL----EKLPELQNSSFLKIIDVDN 162

Query: 247 TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIH-FVNLTKLVTFRANGNSLIFKINPN 305
            ++   +P       +LE++    N+L     E+    NL  L    A+ NSL  K+   
Sbjct: 163 NSLK-KLP---DLPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLK-KLPDL 213

Query: 306 WVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN 365
              P  L  +   +  L       LQ+   L  +Y  +  +   +P    +       LN
Sbjct: 214 ---PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALN 263

Query: 366 ISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK 425
           +  N +   +P        L  +L  + D+S N  S               N+ +   S 
Sbjct: 264 VRDNYL-TDLP-------ELPQSLTFL-DVSENIFS--------GLSELPPNLYYLNASS 306

Query: 426 NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFN 485
           N     + D     P L  LN+ NN     LP     L     L    N L+  +P    
Sbjct: 307 NEIR-SLCD---LPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAE-VPELPQ 357

Query: 486 NFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVA 545
           N   L+ L +  N L    P           + +LR N    + P       +L+ L V 
Sbjct: 358 N---LKQLHVEYNPLR-EFPDIPES------VEDLRMNSHLAEVPE---LPQNLKQLHVE 404

Query: 546 YNNLSGTIPRCINN 559
            N L    P    +
Sbjct: 405 TNPLR-EFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 88/459 (19%), Positives = 133/459 (28%), Gaps = 122/459 (26%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNG------------TVSEIHFVNLTKLVTFRANGNSLI 299
            +P+    + +      + +E                VS +      +      N   L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL- 83

Query: 300 FKINPNWVPP--FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
                + +P     L  L      L    P   QS K L     +   +S   P      
Sbjct: 84  -----SSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP------ 131

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN 417
                +L +S NQ+         P +   + L  I D+ NN+L   +  L         +
Sbjct: 132 --LLEYLGVSNNQL------EKLPELQNSSFL-KIIDVDNNSLK-KLPDLP-------PS 174

Query: 418 IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLS 477
           +EF     N    E+P+   N P L  +   NN+    LP       SL S+   NN L 
Sbjct: 175 LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE 228

Query: 478 GIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA 537
                   N   L  +    N L   +P         L  LN+R N    D P       
Sbjct: 229 --ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDNYLT-DLPELPQ--- 277

Query: 538 SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL 597
           SL  LDV+ N  S  +     N                                      
Sbjct: 278 SLTFLDVSENIFS-GLSELPPN-------------------------------------- 298

Query: 598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIES 657
                    +  ++ S N     +     +L+    LN S N     +P        +E 
Sbjct: 299 ---------LYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPP---RLER 341

Query: 658 LDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
           L  S N L+  +P+   NL     L++  N L  E P  
Sbjct: 342 LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDI 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 56/303 (18%), Positives = 96/303 (31%), Gaps = 82/303 (27%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           +   +     +L+    S  +P+     P L  L    N+ T  LP    +L SL+  N 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 472 RNNRLSGIIPT---------------SFNNFTILEALDMGENELVGNIPTWMGERFSRLI 516
               LS + P                   N + L+ +D+  N L   +P         L 
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLE 176

Query: 517 ILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576
            +   +N+   + P +L  L  L  +    N+L   +P                      
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLP---------------------- 211

Query: 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNF 636
                                      L+L   I    N        E+ NL  L ++  
Sbjct: 212 ------------------------DLPLSLES-IVAGNNILE--ELPELQNLPFLTTIYA 244

Query: 637 SYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
             NL    +PD      S+E+L+   N L+  +P+   +L+FL+      + L+   P+ 
Sbjct: 245 DNNLLK-TLPDLPP---SLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNL 299

Query: 697 TQL 699
             L
Sbjct: 300 YYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 49/272 (18%), Positives = 84/272 (30%), Gaps = 54/272 (19%)

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTIL 490
            + DC     +   L L N   + SLP     L SL       N L+  +P    +   L
Sbjct: 64  RLRDCLDR--QAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSL 116

Query: 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
              +     L    P         L  L + +N+     P +L   + L+I+DV  N+L 
Sbjct: 117 LVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK 166

Query: 551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLV--R 608
             +P    +                              +      L E   + NL    
Sbjct: 167 -KLPDLPPSLEF---------------------------IAAGNNQLEELPELQNLPFLT 198

Query: 609 GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY 668
            I    N+   ++P    +L+   S+    N+        +  +  + ++    N L   
Sbjct: 199 AIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-T 251

Query: 669 IPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 700
           +P    +L  LN  +    +L     S T L 
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 77/444 (17%), Positives = 140/444 (31%), Gaps = 91/444 (20%)

Query: 253 IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQL 312
           I         L+      + L     E    N+     +    +       P      ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 313 TGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY 372
               +R C             ++ ++L +++  +S  +P            L  S N + 
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSL- 103

Query: 373 GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEI 432
                        + +L  + + +  ALS                +E+  +S N    ++
Sbjct: 104 ----TELPELPQSLKSL-LVDNNNLKALSDLP-----------PLLEYLGVSNNQLE-KL 146

Query: 433 PDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEA 492
           P+   N   L+++++ NN+    LP       SL  +   NN+L  +      N   L A
Sbjct: 147 PELQ-NSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLEEL--PELQNLPFLTA 199

Query: 493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552
           +    N L   +P    +    L  +   +N        +L  L  L  +    N L  T
Sbjct: 200 IYADNNSLK-KLP----DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-T 251

Query: 553 IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI 612
           +P    +  A+   D+                            L +   +   +  +D+
Sbjct: 252 LPDLPPSLEALNVRDNY---------------------------LTDLPELPQSLTFLDV 284

Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
           S+N FS  +     NL     LN S N     + D      S+E L+ S N+L   +P  
Sbjct: 285 SENIFS-GLSELPPNLY---YLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPAL 335

Query: 673 MSNLSFLNYLNLSNNNLNGEIPSS 696
              L     L  S N+L  E+P  
Sbjct: 336 PPRLE---RLIASFNHLA-EVPEL 355

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 53/260 (20%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
           L+     ++N T  +P+    + S        +      P        +    + +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC--- 68

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
                       +   L L +       P        L+ L  + N+L+  +P    +  
Sbjct: 69  ---------LDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLK 114

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
           ++   +++     +                           +  L+  + +S N    ++
Sbjct: 115 SLLVDNNNL--KAL-------------------------SDLPPLLEYLGVSNNQLE-KL 146

Query: 622 PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681
           P E+ N   L+ ++   N    ++PD      S+E +    NQL   +P  + NL FL  
Sbjct: 147 P-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTA 199

Query: 682 LNLSNNNLNGEIPSSTQLQS 701
           +   NN+L         L+S
Sbjct: 200 IYADNNSLKKLPDLPLSLES 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG-------------VMRSIESLDFSANQLS 666
           E+PVE  N++       +++ +    P   G             + R    L+ +   LS
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 667 GYIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGGSSFADNDLCGAP 716
             +P+   +   L  L  S N+L  E+P     L+S    +     L   P
Sbjct: 85  -SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 9e-27
 Identities = 80/473 (16%), Positives = 163/473 (34%), Gaps = 31/473 (6%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
            K L +S  ++S+       I+ L  L+ L+LS  ++             L  LD+S N 
Sbjct: 54  TKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLE 156
            Q  I      + SL++LDLSFN F+ + V      L  L FL L + + +     L L 
Sbjct: 112 LQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR----QLDLL 164

Query: 157 NLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEIL--GIFSACVANE 214
            +  +    +  +                  +           +  +      +A    +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 215 LESLDL-----GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269
           L ++ L          F     +      +    +  T               +EYL++ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 270 KNELNGTVSEIHFVNLT---KLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRSCRLGPR 325
              +   +    F       K +      N +           F ++    +        
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 326 FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPL 385
             +   S      L  +    +  + +   +++ +   L +  N +     K    +  +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGL-KNFFKVALMTKNM 402

Query: 386 VTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRML 445
            ++L    D+S N+L+   +   C     +++I    LS N  +G +  C    P++++L
Sbjct: 403 -SSL-ETLDVSLNSLNSHAYDRTCAW---AESILVLNLSSNMLTGSVFRCLP--PKVKVL 455

Query: 446 NLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
           +L NN    S+P  +  L +L  LN+ +N+L  +    F+  T L+ + + +N
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 86/476 (18%), Positives = 174/476 (36%), Gaps = 43/476 (9%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
                L LS+N         +  L+ L+ L LS N+  S+         DLE+L +  NR
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 146 LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL-SQDISEIL 204
           LQ    ++    + S++ L LS ND     +   FG   KL             D+  + 
Sbjct: 112 LQ----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 205 GIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLE 264
            +  +C+  +L S  +   +     + Q+     L+ +   N+     + +S+  + +L+
Sbjct: 168 HLHLSCILLDLVSYHIKGGE---TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 265 YLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
             ++  N+ N          LT+  T     N  +  I   W    +L            
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLL---NVTLQHIETTWKCSVKLFQF--------- 272

Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY-WFLNISGNQMYGGVPKFDSPSM 383
               W +  + LN   ++ T    +    +  +  +     ++           F   ++
Sbjct: 273 ---FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-----FSKEAL 324

Query: 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLR 443
             V    +I  LS +       H++C       +  F   ++N F+  +        RL+
Sbjct: 325 YSVFAEMNIKMLSISDT--PFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 444 MLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI----LEALDMGENE 499
            L L+ N    +         ++ SL   +  L+ +   +++        +  L++  N 
Sbjct: 381 TLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
           L G++   +     ++ +L+L +N+     P  +  L +LQ L+VA N L  ++P 
Sbjct: 440 LTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 89/482 (18%), Positives = 156/482 (32%), Gaps = 63/482 (13%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
            LS L+ L LS +N ++ +           L++L +S   L   S        + SL+ L
Sbjct: 74  FLSELRVLRLS-HN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-----PMASLRHL 126

Query: 68  KLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSRLGNL-TSLKYLDLSFNQFNSV 125
            LSF      P      N + LT L LS  +F+      + +L  S   LDL        
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 126 VPGWLSKLN-DLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFC 184
               L   N  +  L    N L     ++ +  L  +Q   +  NDE   ++ T      
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 185 KLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGH-----MTNQLGRFKG 238
           +  +       ++       + +F       +E L++ +  I         T      K 
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN-- 296
           L    + N     S        A +    LS ++    +  +   + +         N  
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVF 365

Query: 297 -SLIFKINPNWVPPFQLTGLGVRSCRLG--PRFPLWLQSQKKLNDLYISSTRISAKIPRR 353
              +F+         +L  L ++   L    +  L  ++   L  L +S   +++    R
Sbjct: 366 TDSVFQGCSTLK---RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
                     LN+S N + G V  F      L   +  + DL NN +             
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV--FRC----LPPKV-KVLDLHNNRIM------------ 463

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLR 472
                             IP    +   L+ LN+ +N    S+P  +   L+SL  + L 
Sbjct: 464 -----------------SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 473 NN 474
           +N
Sbjct: 506 DN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 55/295 (18%), Positives = 93/295 (31%), Gaps = 61/295 (20%)

Query: 5   QLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSV-NLSKASDSLLVINSLPS 63
           Q      ++YL++         D   +    + LK L I  V N         + +    
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
           +    LS         +   + SS T L+ ++N F   +      L  L+ L L  N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 124 SV--VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
           +   V      ++ LE L +  N L  +          SI  L LS N            
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN------------ 438

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L                   +F  C+  +++ LDL + +I                
Sbjct: 439 ---MLTG----------------SVFR-CLPPKVKVLDLHNNRI---------------- 462

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
                     SIP  +  +  L+ L+++ N+L  +V +  F  LT L     + N
Sbjct: 463 ---------MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 84/493 (17%), Positives = 154/493 (31%), Gaps = 101/493 (20%)

Query: 214 ELESLDLGSCQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYL 266
           EL  L L   +I       F    +       L +LD+S+  +     +S   +A+L +L
Sbjct: 77  ELRVLRLSHNRIRSLDFHVFLFNQD-------LEYLDVSHNRLQN---ISCCPMASLRHL 126

Query: 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGN---SLIFKINPNWVPPFQLTGLGVRSCRLG 323
           DLS N+ +       F NLTKL     +      L      +      L  L     + G
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRF-WNSIFQYWFLNISGNQMYGGVPKFDSPS 382
               L + +   L+ ++  ++  S ++          Q   + ++         +  +  
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ----RLMTFL 242

Query: 383 MPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRL 442
             L              L+ ++ H+    +   K  +FF                    +
Sbjct: 243 SELTRGP--------TLLNVTLQHIETTWKCSVKLFQFFWPR----------------PV 278

Query: 443 RMLNLRNNNFTGSLPMSIGT-----LSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
             LN+ N   T  +     T     L SLM  +++N          ++ F  +    +  
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557
           ++    I        S    LN   N F          L  LQ L +  N L     +  
Sbjct: 339 SDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVA 396

Query: 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617
                M++                                      L     +D+S N+ 
Sbjct: 397 LMTKNMSS--------------------------------------LET---LDVSLNSL 415

Query: 618 -SGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL 676
            S          + +  LN S N+ TG +   +     ++ LD   N++   IP+ +++L
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHL 472

Query: 677 SFLNYLNLSNNNL 689
             L  LN+++N L
Sbjct: 473 QALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            +      L  LQ L L     K           +S L+ L +S  +L+  +        
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AW 426

Query: 61  LPSLKELKLSFCKLHH--FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
             S+  L LS   L    F  L       +  LDL  N     IP  + +L +L+ L+++
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPP----KVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSN 144
            NQ  SV  G   +L  L+++ L  N
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +     N+S+L+ LD+S  +   HA   +  +    +  L +SS  L+ +    L     
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRCLP---- 449

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P +K L L   ++   P     +  +L  L+++ N+ +         LTSL+Y+ L  N 
Sbjct: 450 PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

Query: 122 F 122
           +
Sbjct: 509 W 509

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 3e-26
 Identities = 62/324 (19%), Positives = 113/324 (34%), Gaps = 24/324 (7%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           I     N +  +   ++  +  L     S       +K L +S   LS+ S +   +   
Sbjct: 2   IHEIKQNGNRYKIEKVT--DSSLKQALASLRQSAWNVKELDLSGNPLSQISAA--DLAPF 57

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             L+ L LS   L+    L   + S+L TLDL+ N         L    S++ L  + N 
Sbjct: 58  TKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            + V     S+    + + L +N++   +  L     + +Q L L  N+           
Sbjct: 111 ISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L+  +  +  +  D+   +         +L++LDL S ++   M  +     G+ +
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVVF------AKLKTLDLSSNKL-AFMGPEFQSAAGVTW 218

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           + L N  +   I  +L    NLE+ DL  N  +       F    ++ T        +  
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 302 INPNWVPPFQLTGLGVRSCRLGPR 325
            N        L   G   C   P 
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 38/319 (11%), Positives = 98/319 (30%), Gaps = 34/319 (10%)

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
              +  +++ +     +     +   ++ L+L  N  +      +   + L  LNL +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           L   +     + + L  LD+  N +   +          +  L+  +N       +   R
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSR 118

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595
               + + +A N ++          S +   D     N+I       + +    L     
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK--LNEI-------DTVNFAELA---- 165

Query: 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655
                 +  + +  +++  N    +V  +      L++L+ S N     +         +
Sbjct: 166 ------ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGA 715
             +    N+L   I +++     L + +L  N  +         ++    + A   +   
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 716 PLPNCTKKSVLVTDDQNRI 734
              N  + +V         
Sbjct: 276 TGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 60/331 (18%), Positives = 118/331 (35%), Gaps = 42/331 (12%)

Query: 432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE 491
           I +   N  R ++  + +++   +L     +  ++  L+L  N LS I       FT LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 492 ALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551
            L++  N L   +     E  S L  L+L +N        +L    S++ L  A NN+S 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 552 TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGID 611
            +    +          ++  N I         ++ D                + V+ +D
Sbjct: 113 RVS--CSRGQGKKNIYLAN--NKI--------TMLRDLDE----------GCRSRVQYLD 150

Query: 612 ISKNNFSG-EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670
           +  N            +   L+ LN  YN     +   +     +++LD S+N+L+ ++ 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMG 207

Query: 671 QSMSNLSFLNYLNLSNNNLN---GEIPSSTQLQSFGGSSFADNDLCGAPLPNCTKKSVLV 727
               + + + +++L NN L      +  S  L+ F       N      L +   K+  V
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF---DLRGNGFHCGTLRDFFSKNQRV 264

Query: 728 TD-DQNRIGNEEDGDETDWTLYISMALGFVV 757
               +  +      +E + T+      G   
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 56/334 (16%), Positives = 105/334 (31%), Gaps = 53/334 (15%)

Query: 57  VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
           +  +    K  K++   L         +  ++  LDLS N       + L   T L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI 176
           LS N     +   L  L+ L  L L +N +Q       L    SI+TL  + N       
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANN------- 109

Query: 177 PTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR 235
                    +   S                          +++ L + +I        G 
Sbjct: 110 --------NISRVSCSRGQG-------------------KKNIYLANNKITMLRDLDEGC 142

Query: 236 FKGLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
              + +LDL      T++            LE+L+L  N +     ++ F  L  L    
Sbjct: 143 RSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL---D 197

Query: 293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352
            + N L   + P +     +T + +R+ +L       L+  + L    +          R
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLV 386
            F++   +   +     +   G  + +     L 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 48/308 (15%), Positives = 106/308 (34%), Gaps = 36/308 (11%)

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
                ++++++  ++        N++ LDLS N L+  +S       TKL     + N L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVL 70

Query: 299 IFKINPNWVPPF----QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF 354
                            L  L + +  +       L     +  L+ ++  IS ++    
Sbjct: 71  YE------TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR 118

Query: 355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414
                    + ++ N++   +   D      V  L    DL  N +       +   E  
Sbjct: 119 GQGKKN---IYLANNKI-TMLRDLDEGCRSRVQYL----DLKLNEIDT-----VNFAELA 165

Query: 415 S--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLR 472
           +    +E   L  N    ++    + + +L+ L+L +N     +     + + +  ++LR
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 473 NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532
           NN+L  +I  +      LE  D+  N            +  R+  +  ++ K       +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 533 LCRLASLQ 540
            C + +L 
Sbjct: 282 ECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 57/248 (22%)

Query: 455 SLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSR 514
           ++       +      + ++ L   + +   +   ++ LD+  N L   I       F++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 515 LIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND 574
           L +LNL SN  +    ++   L++L+ LD+  N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSL 634
                                           +  +  + NN S    V  +  QG +++
Sbjct: 101 --------------------------------IETLHAANNNISR---VSCSRGQGKKNI 125

Query: 635 NFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG-YIPQSMSNLSFLNYLNLSNNNLNGEI 693
             + N  T     + G    ++ LD   N++      +  ++   L +LNL  N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 694 PSSTQLQS 701
                   
Sbjct: 185 KGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (281), Expect = 3e-26
 Identities = 69/474 (14%), Positives = 154/474 (32%), Gaps = 39/474 (8%)

Query: 82  SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL 141
             N +      ++++  +  + S   +  ++K LDLS N  + +    L+    LE L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDIS 201
            SN L   +    LE+L++++TL L+ N                +++      N+S+   
Sbjct: 66  SSNVLYETLD---LESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSC 116

Query: 202 EILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQI 260
                         +++ L + +I        G    + +LDL    +D  +        
Sbjct: 117 SRG--------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
             LE+L+L  N +     ++ F  L  L     + N L   + P +     +T + +R+ 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTL---DLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS 380
           +L       L+  + L    +          R F++   +   +     +   G  + + 
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP 440
               L        +      +  +  L        K         +     +     N  
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIAL------KRKEHALLSGQGSETE-RLECERENQA 336

Query: 441 RLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL---DMGE 497
           R R ++     +   +        + ++L  +   L   +         L+      +G+
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKF-HGDFPIQLCRLASLQILDVAYNNLS 550
            EL         E  S L +L     ++       Q  +  +++  D+  +  +
Sbjct: 397 IELQHAT-----EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 1e-25
 Identities = 71/403 (17%), Positives = 129/403 (32%), Gaps = 34/403 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           I     N +  +   ++  +  L     S       +K L +S   LS+ S +   +   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAA--DLAPF 57

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             L+ L LS   L+    L   + S+L TLDL+ N         L    S++ L  + N 
Sbjct: 58  TKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            + V           + + L +N++   +  L     + +Q L L  N+           
Sbjct: 111 ISRVSCSRGQG---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
               L+  +  +  +         +    V  +L++LDL S ++   M  +     G+ +
Sbjct: 167 SSDTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTW 218

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           + L N  +   I  +L    NLE+ DL  N  +       F    ++ T        +  
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFP---LWLQSQKKLNDLYISSTRISAKIPRRFWNSI 358
            N        L   G   C   P      L    +K+   L    +        R   + 
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS 401
            +   ++    Q Y  V    +        L    +    AL 
Sbjct: 338 QRE--IDALKEQ-YRTVIDQVTLRKQAKITL----EQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.1 bits (239), Expect = 6e-21
 Identities = 39/322 (12%), Positives = 100/322 (31%), Gaps = 34/322 (10%)

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRL 476
             +  +++ +     +     +   ++ L+L  N  +      +   + L  LNL +N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 477 SGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536
              +     + + L  LD+  N +   +          +  L+  +N       +   R 
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSRG 119

Query: 537 ASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGF 596
              + + +A N ++          S +   D     N+I       + +    L      
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK--LNEI-------DTVNFAELA----- 165

Query: 597 LVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656
                +  + +  +++  N    +V  +      L++L+ S N     +         + 
Sbjct: 166 -----ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCGAP 716
            +    N+L   I +++     L + +L  N  +         ++    + A   +    
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 717 LPNCTKKSVLVTDDQNRIGNEE 738
             N  + +V           E+
Sbjct: 277 GQNEEECTVPTLGHYGAYCCED 298

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 60/398 (15%), Positives = 127/398 (31%), Gaps = 35/398 (8%)

Query: 311 QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQ 370
           +     V    L        QS   + +L +S   +S            +   LN+S N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNV 69

Query: 371 MYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430
           +Y      ++  +  ++ L ++ DL+NN +   +            +IE    + N+ S 
Sbjct: 70  LY------ETLDLESLSTLRTL-DLNNNYVQ-ELLVG--------PSIETLHAANNNIS- 112

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI-IPTSFNNFTI 489
            +          + + L NN  T    +  G  S +  L+L+ N +  +       +   
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           LE L++  N +  ++   +   F++L  L+L SNK       +    A +  + +  N L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 550 SGTIPRCINNFSAMATTD------SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSI 603
              I + +     +   D            D F  +   + + +  +  + G   E  ++
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 604 LNLVRGIDISKNNFSGEVPVEVTNL--QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFS 661
             L         +        +  L  +    L+   +    R+            +D  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDAL 344

Query: 662 ANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 699
             Q    I Q          L      L+ ++ +  + 
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 54/462 (11%), Positives = 138/462 (29%), Gaps = 61/462 (13%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
           +I          +   ++ + L   ++ +   +   +     +GN L        +    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQ------ISAAD 53

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
           L                      KL  L +SS  +   +     +++     L+++ N +
Sbjct: 54  LAPF------------------TKLELLNLSSNVLYETLDLESLSTLRT---LDLNNNYV 92

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE 431
                      + +  ++ ++   +NN +S                 +   L+ N  +  
Sbjct: 93  ---------QELLVGPSIETL-HAANNNISR------VSCSRGQ-GKKNIYLANNKITML 135

Query: 432 IPDCWMNWPRLRMLNLRNNNFTG-SLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTIL 490
                    R++ L+L+ N     +      +  +L  LNL+ N +  +       F  L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKL 193

Query: 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
           + LD+  N+L    P +     + +  ++LR+NK        L    +L+  D+  N   
Sbjct: 194 KTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALL-------VMKGFLVEYKSI 603
               R   + +    T +      +   +  +  +             +   F     ++
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 604 LNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN 663
                 +   + + +  +  E  N    + ++     +   I       ++  +L+    
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 664 QLSGYIP---QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702
            L   +    ++ + L       +    L       + LQ  
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 4/173 (2%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSV-NLSKASDSLLVIN 59
           +I   L    NL++ DL G  F        + S    ++ +   +V  L+  ++    + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
           +L                  L +        L    +E +  +     N    + +D   
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALK 345

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL 172
            Q+ +V+     +      L  +   L     S G      +   L     ++
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQI 397

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 6e-25
 Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 23/303 (7%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
            H   + S  + L   G           +   LS  +  Y +  N      S     +  
Sbjct: 5   HHHHHHSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWH---SAWRQANSN 56

Query: 63  SLKELKLSFCKLHHFPP-LSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           + +    +   L      L  A       L+L       Q P +   L+ L+++ +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
               +P  + +   LE L+L  N L+   +S+   +L  ++ L +    EL  ++P    
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRALPASIA--SLNRLRELSIRACPEL-TELPEPLA 171

Query: 182 RFCKLKSFSTGFTNLSQ-DISEI-LGIFSACVAN--ELESLDLGSCQIFGHMTNQLGRFK 237
                     G  NL    +    +    A +AN   L+SL + +  +   +   +    
Sbjct: 172 STDASGEHQ-GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTV-SEIHFVNLTKLVTFRANGN 296
            L  LDL   T   + P   G  A L+ L L       T+  +IH   LT+L      G 
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGC 287

Query: 297 SLI 299
             +
Sbjct: 288 VNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 40/261 (15%), Positives = 80/261 (30%), Gaps = 44/261 (16%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSS--LMSLNLRNNRLSGIIPTSFNNFTILEALDM 495
           N    ++          +    +   +    ++L LR+  L    P      + L+ + +
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
               L+  +P  M  +F+ L  L L  N      P  +  L  L+ L +        +P 
Sbjct: 112 DAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 556 CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN 615
            + +  A                                    E++ ++NL   + +   
Sbjct: 169 PLASTDA----------------------------------SGEHQGLVNLQS-LRLEWT 193

Query: 616 NFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN 675
                +P  + NLQ L+SL    +  +  +   I  +  +E LD          P     
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 676 LSFLNYLNLSNNNLNGEIPSS 696
            + L  L L + +    +P  
Sbjct: 252 RAPLKRLILKDCSNLLTLPLD 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 40/294 (13%), Positives = 80/294 (27%), Gaps = 62/294 (21%)

Query: 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN 474
                  +L       + PD       L+ + +        LP ++   + L +L L  N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMG--------ERFSRLIILNLRSNKFH 526
            L   +P S  +   L  L +     +  +P  +         +    L  L L      
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 527 GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIV 586
              P  +  L +L+ L +  + LS  +   I++                           
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP------------------------- 229

Query: 587 EDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS-YNLFTGRI 645
                              L   +D+         P        L+ L     +     +
Sbjct: 230 ------------------KLEE-LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TL 269

Query: 646 PDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN---NLNGEIPSS 696
           P +I  +  +E LD         +P  ++ L     + +  +    L+   P +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 49/282 (17%), Positives = 90/282 (31%), Gaps = 72/282 (25%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
            P Q   LS+LQ++ +                  + L  L           D+   +   
Sbjct: 96  FPDQAFRLSHLQHMTIDA----------------AGLMEL----------PDT---MQQF 126

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGN---------LTSL 112
             L+ L L+   L   P  S A+ + L  L +       ++P  L +         L +L
Sbjct: 127 AGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL 172
           + L L +    S +P  ++ L +L+ L ++++ L     ++   +L  ++ L L G   L
Sbjct: 186 QSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTAL 242

Query: 173 GGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQ 232
               P  FG                                 L+ L L  C     +   
Sbjct: 243 -RNYPPIFG---GRAP--------------------------LKRLILKDCSNLLTLPLD 272

Query: 233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN 274
           + R   L  LDL        +P  + Q+     + +  +   
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 22/193 (11%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHA--------DTISWLSGLSLLKHLYISSVNLSKASD 53
           +P  + +L+ L+ L +     +L          D      GL  L+ L +    +     
Sbjct: 142 LPASIASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200

Query: 54  SLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113
           S   I +L +LK LK+    L    P +  +   L  LDL         P   G    LK
Sbjct: 201 S---IANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 114 YLDLS-FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL--GLENLTSIQTLLLSGN- 169
            L L   +   + +P  + +L  LE L L+      N+S L   +  L +   +L+  + 
Sbjct: 257 RLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCV---NLSRLPSLIAQLPANCIILVPPHL 312

Query: 170 -DELGGKIPTSFG 181
             +L    P +  
Sbjct: 313 QAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 59/420 (14%), Positives = 105/420 (25%), Gaps = 119/420 (28%)

Query: 84  NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143
           + S    L    +         L         D +            +  N+ +  +   
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI 203
             L+     L          L L                   L  F      LS      
Sbjct: 66  RALKATADLLEDATQPGRVALELRSV---------------PLPQFPDQAFRLSH----- 105

Query: 204 LGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANL 263
                      L+ + + +  +                           +P ++ Q A L
Sbjct: 106 -----------LQHMTIDAAGL-------------------------MELPDTMQQFAGL 129

Query: 264 EYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323
           E L L++N L    + I   +L +L          + ++      P  L           
Sbjct: 130 ETLTLARNPLRALPASI--ASLNRLRELSIRACPELTEL------PEPLAST-------- 173

Query: 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM 383
                  Q    L  L +  T I + +P     SI                         
Sbjct: 174 -DASGEHQGLVNLQSLRLEWTGIRS-LP----ASIAN----------------------- 204

Query: 384 PLVTNLGSIFDLSNNALSG---SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP 440
             + NL     + N+ LS    +I HL          +E   L         P  +    
Sbjct: 205 --LQNL-KSLKIRNSPLSALGPAIHHL--------PKLEELDLRGCTALRNYPPIFGGRA 253

Query: 441 RLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL 500
            L+ L L++ +   +LP+ I  L+ L  L+LR       +P+          + +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 45/367 (12%), Positives = 103/367 (28%), Gaps = 78/367 (21%)

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
              L  +       +   L   ++  +   +    + +       +         +G  +
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRAL 68

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALS---GSIFHLICQGENFSKNIEFFQLSKNHF 428
                  +  + P    L    +L +  L       F L         +++   +     
Sbjct: 69  KATADLLEDATQPGRVAL----ELRSVPLPQFPDQAFRL--------SHLQHMTIDAAGL 116

Query: 429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT 488
             E+PD    +  L  L L  N    +LP SI +L+ L  L++R       +P    +  
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 489 I---------LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
                     L++L +    +  ++P  +      L  L +R++         +  L  L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 540 QILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVE 599
           + LD+         P      +                                      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRA-------------------------------------- 253

Query: 600 YKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD 659
                 L R + +   +    +P+++  L  L+ L+    +   R+P  I  + +   + 
Sbjct: 254 -----PLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 660 FSANQLS 666
              +  +
Sbjct: 308 VPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 59/352 (16%), Positives = 102/352 (28%), Gaps = 67/352 (19%)

Query: 212 ANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
           ++  E+L            + L +++     D +                N +    +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66

Query: 272 ELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQ 331
            L  T   +        V        L                          +FP    
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAF 101

Query: 332 SQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS 391
               L  + I +  +  ++P    +++ Q                            L  
Sbjct: 102 RLSHLQHMTIDAAGLM-ELP----DTMQQ-------------------------FAGL-E 130

Query: 392 IFDLSNNALS---GSIFHLIC-QGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNL 447
              L+ N L     SI  L   +  +     E  +L +   S +          L+ L L
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 448 RNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW 507
                  SLP SI  L +L SL +RN+ LS +   + ++   LE LD+     + N P  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
            G   + L  L L+        P+ + RL  L+ LD+        +P  I  
Sbjct: 249 FGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 10/114 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNF--KLHADTISWLSGLSLLKHLYISSVN-LSKASDSLLVI 58
           +   + +L  L+ LDL G                G + LK L +   + L         I
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLD---I 273

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112
           + L  L++L L  C      P   A   +   + +  +        R     + 
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 4e-24
 Identities = 55/306 (17%), Positives = 107/306 (34%), Gaps = 33/306 (10%)

Query: 8   NLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
            L+N + +       + L A     L     ++ L ++ + + +            ++++
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAAL---LDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQK 97

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSV 125
           L + F  + + PP    N   LT L L  N+    +P  +  N   L  L +S N    +
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG---- 181
                     L+ L L SNR    ++ + L  + S+    +S N  L   +         
Sbjct: 157 EDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYN--LLSTLAIPIAVEEL 210

Query: 182 --RFCKLKSFSTG-FTNLSQ------DISEILGIFSACVANELESLDLGSCQIFGHMTNQ 232
                 +          L+       ++++            L  +DL   ++   M + 
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNY--PGLVEVDLSYNELEKIMYHP 267

Query: 233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
             + + L  L +SN  +  ++ L    I  L+ LDLS N L     E +     +L    
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLY 324

Query: 293 ANGNSL 298
            + NS+
Sbjct: 325 LDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 4e-22
 Identities = 70/459 (15%), Positives = 144/459 (31%), Gaps = 94/459 (20%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
           +       ++ +       +        ++   +    +  +    + L +   ++ L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI- 176
           +  Q   +     +  + ++ L +  N ++  +     +N+  +  L+L  N      + 
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-----DLS 130

Query: 177 ---PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
                 F    KL + S    NL + I +    F A  +  L++L L S ++       L
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLER-IED--DTFQATTS--LQNLQLSSNRL---THVDL 182

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
                L   ++S   +      +L     +E LD S N +N  V     V LT L   + 
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTIL---KL 233

Query: 294 NGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353
             N               LT               WL +   L ++ +S   +  KI   
Sbjct: 234 QHN--------------NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYH 266

Query: 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
            +  + +   L IS N++                           AL+     +      
Sbjct: 267 PFVKMQRLERLYISNNRL--------------------------VALNLYGQPI------ 294

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRN 473
               ++   LS NH    +      + RL  L L +N+   +L   + T  +L +L L +
Sbjct: 295 --PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 348

Query: 474 NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERF 512
           N        +   F  +    + + +    I   +    
Sbjct: 349 NDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 64/433 (14%), Positives = 133/433 (30%), Gaps = 65/433 (15%)

Query: 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161
           I S L        + +     +         LN+ + ++ +++ ++  + +  L++   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDL 220
           + L L+                 +++   T  F                     ++ L +
Sbjct: 72  ELLNLNDL---------------QIEEIDTYAFAYAHT----------------IQKLYM 100

Query: 221 GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI 280
           G   I     +       L  L L    +             L  L +S N L   + + 
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 281 HFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLY 340
            F   T L   + + N L   ++ + +P   L    V    L       L     + +L 
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNLLST-----LAIPIAVEELD 211

Query: 341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNAL 400
            S   I+  +       +     L +  N +       D+  +     L  + DLS N L
Sbjct: 212 ASHNSIN-VVRGPVNVEL---TILKLQHNNL------TDTAWLLNYPGLVEV-DLSYNEL 260

Query: 401 SGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI 460
              I +         + +E   +S N     +       P L++L+L +N+    +  + 
Sbjct: 261 E-KIMYHPFVK---MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 461 GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNL 520
                L +L L +N +  +     +    L+ L +  N+   N    +   F  +    +
Sbjct: 315 PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRAL---FRNVARPAV 368

Query: 521 RSNKFHGDFPIQL 533
                H     QL
Sbjct: 369 DDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 52/259 (20%), Positives = 87/259 (33%), Gaps = 59/259 (22%)

Query: 3   PHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLL----- 56
                N   L  L +S  N  ++  DT       + L++L +SS  L+    SL+     
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDT---FQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 57  ---------VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG 107
                     +    +++EL  S   ++            LT L L  N         L 
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT-DTAW-LL 245

Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS 167
           N   L  +DLS+N+   ++     K+  LE L + +NRL   ++    + + +++ L LS
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLS 303

Query: 168 GNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG 227
            N                L           +                LE+L L    I  
Sbjct: 304 HN---------------HLLHVERNQPQFDR----------------LENLYLDHNSI-- 330

Query: 228 HMTNQLGRFKGLNFLDLSN 246
            +T +L     L  L LS+
Sbjct: 331 -VTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 58/317 (18%), Positives = 109/317 (34%), Gaps = 43/317 (13%)

Query: 394 DLSNNALS---GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN 450
              N+ +     ++           + +E   L+           +     ++ L +  N
Sbjct: 51  TFKNSTMRKLPAALLD-------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
                 P     +  L  L L  N LS +    F+N   L  L M  N L   I     +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI---------NNFS 561
             + L  L L SN+      + L  + SL   +V+YN LS T+   I         N+ +
Sbjct: 163 ATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSIN 218

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
            +        + ++    L    + + A L+              +  +D+S N    ++
Sbjct: 219 VV----RGPVNVELTILKLQHNNLTDTAWLLN----------YPGLVEVDLSYNELE-KI 263

Query: 622 PVEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLN 680
                  +Q L+ L  S N     +      + +++ LD S N L  ++ ++      L 
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321

Query: 681 YLNLSNNNLNGEIPSST 697
            L L +N++   +  ST
Sbjct: 322 NLYLDHNSIV-TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 62/362 (17%), Positives = 132/362 (36%), Gaps = 42/362 (11%)

Query: 195 NLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIP 254
           ++     ++   F     N  + +   +  +       L  F+ +  L+L++  ++    
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL------IFKINPNWVP 308
            +      ++ L +  N +   +    F N+  L       N L      IF   P    
Sbjct: 87  YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK--- 142

Query: 309 PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISG 368
              LT L + +  L        Q+   L +L +SS R++  +      S+F     N+S 
Sbjct: 143 ---LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSY 195

Query: 369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF 428
           N +          ++ +   +    D S+N+++  +          +  +   +L  N+ 
Sbjct: 196 NLL---------STLAIPIAV-EELDASHNSIN-VV------RGPVNVELTILKLQHNNL 238

Query: 429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT 488
           + +     +N+P L  ++L  N     +      +  L  L + NNRL   +        
Sbjct: 239 T-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 489 ILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
            L+ LD+  N L+ ++     + F RL  L L  N       ++L    +L+ L +++N+
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 350

Query: 549 LS 550
             
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.0 bits (203), Expect = 9e-17
 Identities = 66/348 (18%), Positives = 121/348 (34%), Gaps = 66/348 (18%)

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFF 421
           +    + M   +P     S   V  L    +L++  +   I         F+    I+  
Sbjct: 50  VTFKNSTM-RKLPAALLDSFRQVELL----NLNDLQIE-EI-----DTYAFAYAHTIQKL 98

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGII 480
            +  N      P  + N P L +L L  N+ + SLP  I      L +L++ NN L  I 
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ 540
             +F   T L+ L +  N L  ++          L   N+  N         L    +++
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 541 ILDVAYNNLSGTIPRCI-----------NNFSAMATTDSSDQ-------SNDIFYASLGD 582
            LD ++N+++  +   +           NN +  A   +           N++       
Sbjct: 209 ELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL------- 260

Query: 583 EKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFT 642
           EKI+    + M+           L   + IS N     + +    +  L+ L+ S+N   
Sbjct: 261 EKIMYHPFVKMQ----------RL-ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 643 GRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
             +  N      +E+L    N +   +  S      L  L LS+N+ +
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 47/304 (15%), Positives = 98/304 (32%), Gaps = 35/304 (11%)

Query: 387 TNLGSIFDLSNNALSGSIFHLICQGENFS-KNIEFFQLSKNHFSGEIPDCWMNWPRLRML 445
           +NL       +  +      +    E+ +  N +      +           ++ ++ +L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 446 NLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
           NL +         +     ++  L +  N +  + P  F N  +L  L +  N+L  ++P
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565
             +     +L  L++ +N              SLQ L ++ N L+  +   ++   ++  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV 625
            + S                                +I   V  +D S N+ +    V  
Sbjct: 191 ANVSYNLLSTL-------------------------AIPIAVEELDASHNSINV---VRG 222

Query: 626 TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS 685
                L  L   +N  T      +     +  +D S N+L   +      +  L  L +S
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 686 NNNL 689
           NN L
Sbjct: 281 NNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 46/297 (15%), Positives = 97/297 (32%), Gaps = 59/297 (19%)

Query: 407 LICQGENFSKNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNNFTGSLPMSIGTLS 464
             C   N   +  F+ +  +  + ++   +  +     +++  +N+         + +  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK 524
            +  LNL + ++  I   +F     ++ L MG N +   +P  + +    L +L L  N 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 525 FHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEK 584
                         L  L ++ NNL   I                   +D F        
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIE------------------DDTF-------- 161

Query: 585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644
                                 ++ + +S N  +    V+++ +  L   N SYNL +  
Sbjct: 162 -----------------QATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-- 199

Query: 645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
               + +  ++E LD S N ++  +   +     L  L L +NNL  +         
Sbjct: 200 ---TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLNYPG 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 1e-23
 Identities = 59/277 (21%), Positives = 90/277 (32%), Gaps = 47/277 (16%)

Query: 2   IPHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           +P  +   S+   L+L       L          L+ L  L +SS  LS           
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR--LGNLTSLKYLDLS 118
             SLK L LSF  +      +      L  LD   +  + Q+       +L +L YLD+S
Sbjct: 77  TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 134

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
                    G  + L+ LE L +  N  Q N        L ++  L LS           
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--------- 185

Query: 179 SFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFK 237
                 +L+  S   F +LS                 L+ L++     F   T       
Sbjct: 186 ------QLEQLSPTAFNSLSS----------------LQVLNMSHNNFFSLDTFPYKCLN 223

Query: 238 GLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSKN 271
            L  LD S     T            ++L +L+L++N
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 51/284 (17%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT--GSLPMSIGTLSSLMSL 469
                +    +L  N         +    +L  L+L +N  +  G    S    +SL  L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDF 529
           +L  N +   + ++F     LE LD   + L       +      LI L++        F
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 530 PIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA 589
                 L+SL++L +A N+         + F+ +                          
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELR------------------------- 175

Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPDN 648
                          NL   +D+S+     ++      +L  LQ LN S+N F   +   
Sbjct: 176 ---------------NLTF-LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTF 217

Query: 649 I-GVMRSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLN 690
               + S++ LD+S N +     Q + +  S L +LNL+ N+  
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 6/159 (3%)

Query: 394 DLSNNALSGSIFHLICQGENFS-KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF 452
            LS+N LS   F   C   +F   ++++  LS N     +   ++   +L  L+ +++N 
Sbjct: 58  SLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 113

Query: 453 TGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511
                 S+  +L +L+ L++ +          FN  + LE L M  N    N    +   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
              L  L+L   +     P     L+SLQ+L++++NN  
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 54/282 (19%), Positives = 92/282 (32%), Gaps = 43/282 (15%)

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
           ++   L+L  N+L  ++    F  LT+L     + N L FK            G      
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG----CCSQSDFGT----- 77

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS 380
                          L  L +S   +   +   F     Q   L+   + +         
Sbjct: 78  -------------TSLKYLDLSFNGVIT-MSSNFLGLE-QLEHLDFQHSNL------KQM 116

Query: 381 PSMPLVTNLGS--IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEI-PDCWM 437
               +  +L +    D+S+       F+ I  G     ++E  +++ N F     PD + 
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFT 172

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
               L  L+L         P +  +LSSL  LN+ +N    +    +     L+ LD   
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
           N ++ +    +    S L  LNL  N F        C   S 
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACT-----CEHQSF 269

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 19/222 (8%)

Query: 339 LYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSI--FDLS 396
           L + S ++   +P   ++ + Q   L++S N +      F            S+   DLS
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-----FKGCCSQSDFGTTSLKYLDLS 86

Query: 397 NNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDC--WMNWPRLRMLNLRNNNFTG 454
            N +       +       + +E      ++   ++ +   +++   L  L++ + +   
Sbjct: 87  FNGVIT-----MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 455 SLPMSIGTLSSLMSLNLRNNR-LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513
           +       LSSL  L +  N      +P  F     L  LD+ + +L   +        S
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199

Query: 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
            L +LN+  N F          L SLQ+LD + N++  T  +
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 4e-23
 Identities = 64/366 (17%), Positives = 116/366 (31%), Gaps = 59/366 (16%)

Query: 8   NLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
            L+N + +       + L A     L     ++ L ++ + + +            ++++
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAAL---LDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQK 103

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSV 125
           L + F  + + PP    N   LT L L  N+    +P  +  N   L  L +S N    +
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
                     L+ L L SNR    ++ + L  + S+    +S N                
Sbjct: 163 EDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYN---------------L 203

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
           L + +                        +E LD     I      +      L  L L 
Sbjct: 204 LSTLAIPIA--------------------VEELDASHNSI---NVVRGPVNVELTILKLQ 240

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPN 305
           +  +       L     L  +DLS NEL   +    FV + +L     + N  +  +N  
Sbjct: 241 HNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLY 296

Query: 306 WVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN 365
             P   L  L +    L            +L +LY+    I   +     +++     L 
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN---LT 351

Query: 366 ISGNQM 371
           +S N  
Sbjct: 352 LSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (250), Expect = 4e-22
 Identities = 89/648 (13%), Positives = 191/648 (29%), Gaps = 108/648 (16%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
           +       ++ +       +        ++   +    +  +    + L +   ++ L+L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI- 176
           +  Q   +     +  + ++ L +  N ++  +     +N+  +  L+L  N      + 
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-----DLS 136

Query: 177 ---PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
                 F    KL + S    NL + I +    F A  +  L++L L S ++       L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLER-IED--DTFQATTS--LQNLQLSSNRL---THVDL 188

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
                L   ++S   +      +L     +E LD S N +N  V     V LT L   + 
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTIL---KL 239

Query: 294 NGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353
             N               LT               WL +   L ++ +S   +  KI   
Sbjct: 240 QHN--------------NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYH 272

Query: 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGEN 413
            +  + +   L IS N++                           AL+     +      
Sbjct: 273 PFVKMQRLERLYISNNRL--------------------------VALNLYGQPI------ 300

Query: 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRN 473
               ++   LS NH    +      + RL  L L +N+   +L   + T  +L +L L +
Sbjct: 301 --PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354

Query: 474 NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER---------FSRLIILNLRSNK 524
           N        +   F  +    + + +    I   +            +   ++  +    
Sbjct: 355 NDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS 412

Query: 525 FHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEK 584
                     R ++   ++   +       +           ++           L +E+
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQ 472

Query: 585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644
           I ++ LL  +G   E  + L   R         S  +    T+L+  Q+          R
Sbjct: 473 IQQEQLL--QGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA--R 528

Query: 645 IPDNIGVMRSIESLDFSANQLSGYIPQ-SMSNLSFLNYLNLSNNNLNG 691
             +     +  E L+     L   +              +L    +  
Sbjct: 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.3 bits (242), Expect = 4e-21
 Identities = 58/298 (19%), Positives = 100/298 (33%), Gaps = 31/298 (10%)

Query: 3   PHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
              L +   ++ L+L+    + +        +    ++ LY+    +      +    ++
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF--QNV 122

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P L  L L    L   P     N   LTTL +S N  +          TSL+ L LS N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT-SF 180
              V    +     L   ++  N L        L    +++ L  S N      I     
Sbjct: 183 LTHVDLSLIPS---LFHANVSYNLLS------TLAIPIAVEELDASHN-----SINVVRG 228

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
               +L        NL+                 L  +DL   ++   M +   + + L 
Sbjct: 229 PVNVELTILKLQHNNLTD-----TAWLLNY--PGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
            L +SN  +  ++ L    I  L+ LDLS N L     E +     +L     + NS+
Sbjct: 282 RLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 8e-18
 Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 59/256 (23%)

Query: 6   LGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLL-------- 56
             N   L  L +S  N  ++  DT       + L++L +SS  L+    SL+        
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDT---FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199

Query: 57  ------VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLT 110
                  +    +++EL  S   ++            LT L L  N         L N  
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT-DTAW-LLNYP 254

Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
            L  +DLS+N+   ++     K+  LE L + +NRL   ++    + + +++ L LS N 
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHN- 311

Query: 171 ELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT 230
                          L           +                LE+L L    I   +T
Sbjct: 312 --------------HLLHVERNQPQFDR----------------LENLYLDHNSI---VT 338

Query: 231 NQLGRFKGLNFLDLSN 246
            +L     L  L LS+
Sbjct: 339 LKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 62/312 (19%), Positives = 107/312 (34%), Gaps = 47/312 (15%)

Query: 394 DLSNNALS---GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNN 450
              N+ +     ++           + +E   L+           +     ++ L +  N
Sbjct: 57  TFKNSTMRKLPAALLD-------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGE 510
                 P     +  L  L L  N LS +    F+N   L  L M  N L   I     +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 168

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570
             + L  L L SN+      + L  + SL   +V+YN LS T+   I             
Sbjct: 169 ATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAV----------- 213

Query: 571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG 630
           +  D  + S+    +V   + V             L   + +  NN + +    + N  G
Sbjct: 214 EELDASHNSI---NVVRGPVNV------------EL-TILKLQHNNLT-DTAW-LLNYPG 255

Query: 631 LQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
           L  ++ SYN    +I  +    M+ +E L  S N+L   +      +  L  L+LS+N+L
Sbjct: 256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 690 NGEIPSSTQLQS 701
                +  Q   
Sbjct: 314 LHVERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 36/252 (14%), Positives = 79/252 (31%), Gaps = 37/252 (14%)

Query: 446 NLRNNNFTGSLPMSIGTLSSLMSLN-LRNNRLSGIIPTSFNNFTI-----LEALDMGENE 499
             +  N     P      S+L       +  +       +  F        + +    + 
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           +   +P  + + F ++ +LNL   +             ++Q L + +N +    P    N
Sbjct: 63  MR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
              +         ND+         +                +   L   + +S NN   
Sbjct: 122 VPLLTVLVLER--NDL-------SSLPRGIF----------HNTPKLTT-LSMSNNNLE- 160

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSF 678
            +  +       LQ+L  S N  T  +     ++ S+   + S N LS     +++    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 679 LNYLNLSNNNLN 690
           +  L+ S+N++N
Sbjct: 213 VEELDASHNSIN 224

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISS-VNLSKASDSLLVINSL 61
                   NL  L L   N  L     +  +GL+LL+ L +S    L     +    + L
Sbjct: 49  AASFRACRNLTILWLH-SN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGL 104

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFN 120
             L  L L  C L    P      ++L  L L +N  Q  +P     +L +L +L L  N
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           + +SV       L+ L+ L L  NR+  ++      +L  + TL L  N
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 53/246 (21%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN- 120
            + + + L   ++ H P  S     +LT L L  N       +    L  L+ LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
           Q  SV P     L  L  L L    LQ  +       L ++Q L L  N           
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN----------- 139

Query: 181 GRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQI-------FGHMTNQ 232
                L++     F +L                  L  L L   +I       F  + + 
Sbjct: 140 ----ALQALPDDTFRDLGN----------------LTHLFLHGNRISSVPERAFRGLHS- 178

Query: 233 LGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
                 L+ L L    +    P +   +  L  L L  N L+  +       L  L   R
Sbjct: 179 ------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

Query: 293 ANGNSL 298
            N N  
Sbjct: 232 LNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 50/253 (19%), Positives = 82/253 (32%), Gaps = 48/253 (18%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
              + + L  N  +     S     +L  L L +N L+ I   +F    +LE LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
            + ++         RL  L+L         P     LA+LQ L +  N L   +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP----- 145

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                        +D F                           L  +  + +  N  S 
Sbjct: 146 -------------DDTFRD-------------------------LGNLTHLFLHGNRIS- 166

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLS 677
            VP      L  L  L    N     +  +    +  + +L   AN LS    ++++ L 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 678 FLNYLNLSNNNLN 690
            L YL L++N   
Sbjct: 226 ALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 423 LSKNHFSGEIP-DCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGII 480
           LS N     +    +    RL  L+L        L   +   L++L  L L++N L  + 
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ 540
             +F +   L  L +  N +  ++P         L  L L  N+     P     L  L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 541 ILDVAYNNLSGTIPR 555
            L +  NNLS  +P 
Sbjct: 205 TLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 2/140 (1%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
                  +   L  N  S      +     L +L L +N        +   L+ L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 472 -RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
             N +L  + P +F+    L  L +    L   +   +    + L  L L+ N       
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 531 IQLCRLASLQILDVAYNNLS 550
                L +L  L +  N +S
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 49/280 (17%), Positives = 81/280 (28%), Gaps = 66/280 (23%)

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
           A  + + L  N ++  V    F     L     + N L        +     TGL     
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR------IDAAAFTGL----- 79

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS 380
                          L  L +S       +    ++ + +   L++              
Sbjct: 80  -------------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG---------- 116

Query: 381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPD-CWMNW 439
                      + +L      G    L          +++  L  N     +PD  + + 
Sbjct: 117 -----------LQELGPGLFRG----L--------AALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
             L  L L  N  +     +   L SL  L L  NR++ + P +F +   L  L +  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
           L   +PT        L  L L  N +  D     CR   L
Sbjct: 213 LS-ALPTEALAPLRALQYLRLNDNPWVCD-----CRARPL 246

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 6   LGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSL 64
             +L NL +L L G     +         GL  L  L +    ++           L  L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERA---FRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRL 203

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSEN 96
             L L    L   P  + A   +L  L L++N
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 37/257 (14%), Positives = 74/257 (28%), Gaps = 76/257 (29%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
              +        ++P+ I   ++   + L  NR+S +   SF     L  L +  N    
Sbjct: 14  VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--- 67

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
                         +  + +  F G        LA L+ LD++ N    ++         
Sbjct: 68  --------------LARIDAAAFTG--------LALLEQLDLSDNAQLRSVD-------- 97

Query: 563 MATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622
                        F+                          L  +  + + +     E+ 
Sbjct: 98  ----------PATFHG-------------------------LGRLHTLHLDRCGLQ-ELG 121

Query: 623 VEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLN 680
             +   L  LQ L    N     +PD+    + ++  L    N++S    ++   L  L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 681 YLNLSNNNLNGEIPSST 697
            L L  N +   +    
Sbjct: 181 RLLLHQNRVA-HVHPHA 196

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 35/285 (12%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
               +     +L   +           + L+ +  +  ++ ++         I  LP++ 
Sbjct: 17  DDAFAETIKDNLKKKSVT----DAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVT 68

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP--SRLGNLTSLKYLDLSFNQFN 123
           +L L+  KL    PL+  N  +L  L L EN    +I   S L +L  LK L L  N  +
Sbjct: 69  KLFLNGNKLTDIKPLT--NLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS 122

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP--TSFG 181
            +    L  L  LE L L +N++  +I+   L  LT + TL L  N     +I       
Sbjct: 123 DING--LVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDN-----QISDIVPLA 172

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              KL++      ++S D+  + G+        L+ L+L S +      N        N 
Sbjct: 173 GLTKLQNLYLSKNHIS-DLRALAGL------KNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286
           +  ++ ++     +S         +     E    VS I +  +T
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 46/262 (17%), Positives = 96/262 (36%), Gaps = 52/262 (19%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
           +      S  + +        ++     +  L    +      +    +S+  +  + ++
Sbjct: 1   MGETITVSTPIKQIFP----DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD 54

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLEN 157
            +  +   +  L ++  L L+ N+   + P  L+ L +L +L L  N+++ ++S   L++
Sbjct: 55  IK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKD 107

Query: 158 LTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELES 217
           L  +++L L  N                              IS+I G+       +LES
Sbjct: 108 LKKLKSLSLEHN-----------------------------GISDINGLVH---LPQLES 135

Query: 218 LDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTV 277
           L LG+ +I       L R   L+ L L +  +   I   L  +  L+ L LSKN ++  +
Sbjct: 136 LYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DL 190

Query: 278 SEIHFVNLTKLVTFRANGNSLI 299
             +    L  L          +
Sbjct: 191 RALA--GLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 41/261 (15%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
            +      NL+  + T ++      L+S+  +   N+ +  +          +  L +  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557
           N+L  +I          L  L L  NK        L  L  L+ L + +N +S      I
Sbjct: 75  NKLT-DIKPL--TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-----DI 124

Query: 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617
           N    +           +    LG+ KI +          +   S L  +  + +  N  
Sbjct: 125 NGLVHL---------PQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQI 165

Query: 618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPD--NIGVMRSIESLDFSANQLSGYIPQSMSN 675
           S  VP+    L  LQ+L  S N     I D   +  +++++ L+  + +         SN
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 676 LSFLNYLNLSNNNLNGEIPSS 696
           L   N +  ++ +L      S
Sbjct: 220 LVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 56/380 (14%), Positives = 94/380 (24%), Gaps = 158/380 (41%)

Query: 106 LGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTL 164
                     +L        V    ++LN ++ +   ++    +I S+ G++ L ++  L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 70

Query: 165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQ 224
            L+GN               KL       TNL                  L  L L   +
Sbjct: 71  FLNGN---------------KLTDIK-PLTNLKN----------------LGWLFLDENK 98

Query: 225 IFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI-HFV 283
           I                 DLS+          L  +  L+ L L  N +    S+I   V
Sbjct: 99  I----------------KDLSS----------LKDLKKLKSLSLEHNGI----SDINGLV 128

Query: 284 NLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISS 343
           +L +L +     N  I  I                           L    KL+ L +  
Sbjct: 129 HLPQLESLYLGNNK-ITDITV-------------------------LSRLTKLDTLSLED 162

Query: 344 TRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS 403
            +IS                 +I                +  + NL     LS N +S  
Sbjct: 163 NQIS-----------------DIVPLA-----------GLTKLQNL----YLSKNHIS-- 188

Query: 404 IFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTL 463
                        ++                       L +L L +             L
Sbjct: 189 -------------DLRALA---------------GLKNLDVLELFSQECLNKPINHQSNL 220

Query: 464 SSLMSLNLRNNRLSGIIPTS 483
               ++   +  L      S
Sbjct: 221 VVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 9e-06
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 393 FDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF 452
              +N+ +  S+  +    +    N+    L+ N  +   P    N   L  L L  N  
Sbjct: 48  IIANNSDIK-SVQGI----QYL-PNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKI 99

Query: 453 TGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERF 512
              L  S+  L  L SL+L +N +S I      +   LE+L +G N++  +I      R 
Sbjct: 100 K-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DITVL--SRL 152

Query: 513 SRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
           ++L  L+L  N+   D    L  L  LQ L ++ N++S
Sbjct: 153 TKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 1e-05
 Identities = 54/375 (14%), Positives = 109/375 (29%), Gaps = 84/375 (22%)

Query: 257 LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG 316
               A     +L K  +   V++    ++ ++    AN +  I  +              
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQI---IANNSD-IKSVQG------------ 60

Query: 317 VRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP 376
                        +Q    +  L+++  +++                 +I          
Sbjct: 61  -------------IQYLPNVTKLFLNGNKLT-----------------DIKP-------- 82

Query: 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW 436
                 +  + NLG +  L  N +   +  L    ++  K ++   L  N  S +I    
Sbjct: 83  ------LTNLKNLGWL-FLDENKIK-DLSSL----KDL-KKLKSLSLEHNGIS-DINGLV 128

Query: 437 MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496
            + P+L  L L NN  T  +   +  L+ L +L+L +N++S I        T L+ L + 
Sbjct: 129 -HLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLS 183

Query: 497 ENELVGNIPTWMG-ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI-- 553
           +N    +I           L +L L S +           L     +     N  G++  
Sbjct: 184 KN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV----KNTDGSLVT 235

Query: 554 PRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDIS 613
           P  I++       +      +                     F       L  V  +   
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYD 295

Query: 614 KNNFSGEVPVEVTNL 628
            +    +  VE    
Sbjct: 296 VDGTVIKTKVEAGTR 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 50/307 (16%), Positives = 95/307 (30%), Gaps = 59/307 (19%)

Query: 3   PHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
                NL NL  L L      K+        + L  L+ LY+S   L +     L     
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLERLYLSKNQLKE-----LPEKMP 120

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ-GQIPSR-LGNLTSLKYLDLSF 119
            +L+EL++   ++           + +  ++L  N  +   I +     +  L Y+ ++ 
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
               ++  G       L  L L  N++   + +  L+ L ++  L LS N          
Sbjct: 181 TNITTIPQGLPPS---LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN---------- 226

Query: 180 FGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
                 + +   G   N                   L  L L + ++   +   L   K 
Sbjct: 227 -----SISAVDNGSLANTPH----------------LRELHLNNNKL-VKVPGGLADHKY 264

Query: 239 LNFLDLSN------TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIH---FVNLTKLV 289
           +  + L N       + D   P    + A+   + L  N +     EI    F  +    
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV--QYWEIQPSTFRCVYVRA 322

Query: 290 TFRANGN 296
             +    
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 45/292 (15%), Positives = 96/292 (32%), Gaps = 41/292 (14%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
              L + +  +++  D      +L +L  L L   K+    P + A    L  L LS+N+
Sbjct: 54  TALLDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ-GNISSLGLE 156
            + ++P ++    +L+ L +  N+   V     + LN +  + L +N L+   I +   +
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 157 NLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQ------DISEI-LGIFS 208
            +  +  + ++                  + +   G   +L++       I+++      
Sbjct: 169 GMKKLSYIRIADT---------------NITTIPQGLPPSLTELHLDGNKITKVDAASLK 213

Query: 209 ACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268
               N L  L L    I       L     L  L L+N  +   +P  L     ++ + L
Sbjct: 214 GL--NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 269 SKNEL-----NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGL 315
             N +     N      +              N     +    + P     +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN----PVQYWEIQPSTFRCV 318

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 54/296 (18%), Positives = 107/296 (36%), Gaps = 39/296 (13%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           ++   +     L  N  +      + N   L  L L NN  +   P +   L  L  L L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
             N+L  +          L+ L + ENE+   +   +    +++I++ L +N       I
Sbjct: 108 SKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-SSGI 162

Query: 532 Q---LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVED 588
           +      +  L  + +A  N++ TIP+      ++         N I        K+   
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG--NKI-------TKVDAA 210

Query: 589 ALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDN 648
           +L  +           NL   + +S N+ S      + N   L+ L+ + N    ++P  
Sbjct: 211 SLKGLN----------NL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 649 IGVMRSIESLDFSANQLSG------YIPQSMSNLSFLNYLNLSNNNLN-GEIPSST 697
           +   + I+ +    N +S         P   +  +  + ++L +N +   EI  ST
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 61/403 (15%), Positives = 114/403 (28%), Gaps = 135/403 (33%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
                 LDL  N+          NL +L  L L  N+ + + PG  + L  LE L L  N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEI 203
           +L      L  +   ++Q L +  N               ++       F  L+Q     
Sbjct: 111 QL----KELPEKMPKTLQELRVHEN---------------EITKVRKSVFNGLNQ----- 146

Query: 204 LGIFSACVANELESLDLGSCQI---------FGHMTNQLGRFKGLNFLDLSNTTMDGSIP 254
                      +  ++LG+  +         F  M         L+++ +++T +  +IP
Sbjct: 147 -----------MIVVELGTNPLKSSGIENGAFQGMKK-------LSYIRIADTNIT-TIP 187

Query: 255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTG 314
             L    +L  L L  N++   V       L  L     + NS+      + V    L  
Sbjct: 188 QGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI------SAVDNGSLAN 238

Query: 315 LGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGG 374
                                L +L++++ ++   +P                       
Sbjct: 239 T------------------PHLRELHLNNNKLVK-VPGGL-------------------- 259

Query: 375 VPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPD 434
                      +  +     L NN +S                     +  N F    P 
Sbjct: 260 ------ADHKYIQVV----YLHNNNIS--------------------AIGSNDFCP--PG 287

Query: 435 CWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNR 475
                     ++L +N        P +   +    ++ L N +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 7   GNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           G   +L  L L G    K+ A +   L GL+ L  L +S  ++S   +  L   + P L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAAS---LKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLR 243

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG------QIPSRLGNLTSLKYLDLSF 119
           EL L+  KL   P    A+   +  + L  N            P       S   + L  
Sbjct: 244 ELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 120 N--QFNSVVPGWLSKLNDLEFLSLQSNR 145
           N  Q+  + P     +     + L + +
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 53/306 (17%), Positives = 101/306 (33%), Gaps = 46/306 (15%)

Query: 394 DLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
           DL NN ++  I     +  +F   KN+    L  N  S   P  +    +L  L L  N 
Sbjct: 58  DLQNNKIT-EI-----KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 452 FTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL-VGNIPTWMGE 510
               LP       +L  L +  N ++ +  + FN    +  +++G N L    I     +
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 511 RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570
              +L  + +         P  L    SL  L +  N ++      +   + +A    S 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG 630
             N I         +   +L           +  +L R + ++ N    +VP  + + + 
Sbjct: 226 --NSI-------SAVDNGSL----------ANTPHL-RELHLNNNKLV-KVPGGLADHKY 264

Query: 631 LQSLNFSYNLFTGRIPDN-------IGVMRSIESLDFSANQLSGYI--PQSMSNLSFLNY 681
           +Q +    N  +  I  N            S   +   +N +  +   P +   +     
Sbjct: 265 IQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 682 LNLSNN 687
           + L N 
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 53/299 (17%), Positives = 94/299 (31%), Gaps = 29/299 (9%)

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
                 LDL N  +          + NL  L L  N+++  +S   F  L KL     + 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRI-SAKIPRRF 354
           N L  K  P  +P   L  L V    +            ++  + + +  + S+ I    
Sbjct: 110 NQL--KELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414
           +  + +  ++ I+            +    L  +L  +  L  N ++  +        + 
Sbjct: 167 FQGMKKLSYIRIADTN-------ITTIPQGLPPSLTEL-HLDGNKIT-KV-----DAASL 212

Query: 415 S--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLR 472
               N+    LS N  S        N P LR L+L NN     +P  +     +  + L 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 473 NNRLSGIIPTSF------NNFTILEALDMGENEL-VGNIPTWMGERFSRLIILNLRSNK 524
           NN +S I    F              + +  N +    I             + L + K
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 68/312 (21%)

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           L  +  S+  ++  +P  L    +   LDL  N++   + +  F NL  L T     N +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 299 IFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSI 358
                 + + P     L                   KL  LY+S  ++  ++P +   ++
Sbjct: 89  ------SKISPGAFAPL------------------VKLERLYLSKNQLK-ELPEKMPKTL 123

Query: 359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNI 418
            +   L +  N++   V K     +  +  +    +L  N L  S               
Sbjct: 124 QE---LRVHENEITK-VRKSVFNGLNQMIVV----ELGTNPLKSS--------------- 160

Query: 419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478
               +    F G          +L  + + + N T ++P   G   SL  L+L  N+++ 
Sbjct: 161 ---GIENGAFQG--------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITK 206

Query: 479 IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS 538
           +   S      L  L +  N +   +          L  L+L +NK     P  L     
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264

Query: 539 LQILDVAYNNLS 550
           +Q++ +  NN+S
Sbjct: 265 IQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 83/259 (32%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
           LR++   +      +P  +        L+L+NN+++ I    F N   L  L +  N++ 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
                             +    F          L  L+ L ++ N L   +P       
Sbjct: 90  -----------------KISPGAFAP--------LVKLERLYLSKNQLK-ELP------- 116

Query: 562 AMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621
                        +                         K++  L     + +N  + +V
Sbjct: 117 -----------EKMP------------------------KTLQEL----RVHENEIT-KV 136

Query: 622 PVEV-TNLQGLQSLNFSYN-LFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSF 678
              V   L  +  +    N L +  I +     M+ +  +  +   ++  IPQ +     
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPS 193

Query: 679 LNYLNLSNNNLNGEIPSST 697
           L  L+L  N +  ++ +++
Sbjct: 194 LTELHLDGNKIT-KVDAAS 211

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.4 bits (240), Expect = 4e-21
 Identities = 63/293 (21%), Positives = 104/293 (35%), Gaps = 69/293 (23%)

Query: 10  SNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           SN +YL+L   N + + ADT      L  L+ L +   ++ +        N L SL  L+
Sbjct: 75  SNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTLE 129

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLS-FNQFNSVV 126
           L    L   P  +    S L  L L  N  +  IPS     + SL  LDL    +   + 
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKL 186
            G    L +L++L+L    ++ ++ +  L  L  ++ L +SGN                 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGN---------------HF 230

Query: 187 KSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
                G F  LS                 L+ L + +        +Q+   +   F  L+
Sbjct: 231 PEIRPGSFHGLSS----------------LKKLWVMN--------SQVSLIERNAFDGLA 266

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
                           +L  L+L+ N L+ ++    F  L  LV    + N  
Sbjct: 267 ----------------SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN-LSKASDSLLVINSL 61
                 LS L+ L L   N  + +      + +  L  L +  +  L   S+       L
Sbjct: 140 SGAFEYLSKLRELWLRN-N-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGL 195

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            +LK L L  C +   P L+      L  L++S N F    P     L+SLK L +  +Q
Sbjct: 196 FNLKYLNLGMCNIKDMPNLT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
            + +       L  L  L+L  N L  ++       L  +  L L  N
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 46/247 (18%), Positives = 78/247 (31%), Gaps = 42/247 (17%)

Query: 3   PHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
                +L +L+ L L   + + +        +GL+ L  L +    L+           L
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIEVGA---FNGLASLNTLELFDNWLTVIPSGAF--EYL 146

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFN 120
             L+EL L    +   P  +     SL  LDL E +    I       L +LKYL+L   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
               +    L+ L  LE L +  N     I       L+S++ L +  +           
Sbjct: 207 NIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS----------- 252

Query: 181 GRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
               ++       F  L+                 L  L+L    +     +     + L
Sbjct: 253 ----QVSLIERNAFDGLAS----------------LVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 240 NFLDLSN 246
             L L +
Sbjct: 293 VELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 63/265 (23%), Positives = 94/265 (35%), Gaps = 26/265 (9%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            S+   L+L EN  Q        +L  L+ L L  N    +  G  + L  L  L L  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKI----PTSFGRFCKLKSFSTGFTNLSQDI 200
            L   I S   E L+ ++ L L  N      I      +F R   L     G     + I
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNN-----PIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 201 SEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQI 260
           SE  G F       L+ L+LG C I       L    GL  L++S        P S   +
Sbjct: 188 SE--GAFEGLFN--LKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRS 319
           ++L+ L +  ++++  +    F  L  LV      N+L   +  +   P   L  L +  
Sbjct: 242 SSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHH 299

Query: 320 ------CRLGPRFPLWLQSQKKLND 338
                 C +      WL+     N 
Sbjct: 300 NPWNCDCDILW-LAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
            +    + +L  LDL     KL   +     GL  LK+L +   N+      +  +  L 
Sbjct: 164 SYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIK----DMPNLTPLV 218

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFNQ 121
            L+EL++S        P S    SSL  L +  ++    I       L SL  L+L+ N 
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQ 147
            +S+     + L  L  L L  N   
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 46/250 (18%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
              R LNL  NN       +   L  L  L L  N +  I   +FN    L  L++ +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           L   IP+   E  S+L  L LR+N           R+ SL  LD+        I      
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                           F                           L  ++ +++   N   
Sbjct: 190 --------------GAFEG-------------------------LFNLKYLNLGMCNIK- 209

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFL 679
           ++P  +T L GL+ L  S N F    P +   + S++ L    +Q+S     +   L+ L
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 680 NYLNLSNNNL 689
             LNL++NNL
Sbjct: 269 VELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 394 DLSNNALS----GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW-MNWPRLRMLNLR 448
            L  N++     G+   L         ++   +L  N  +  IP        +LR L LR
Sbjct: 105 QLGRNSIRQIEVGAFNGL--------ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 449 NNNFTGSLPMSIGTLSSLMSLNL-RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW 507
           NN        +   + SLM L+L    +L  I   +F     L+ L++G   +  ++P  
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL 214

Query: 508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
                  L  L +  N F    P     L+SL+ L V  + +S  I R
Sbjct: 215 TP--LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 394 DLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
           +L  N +   I     Q + F    ++E  QL +N         +     L  L L +N 
Sbjct: 81  NLMENNIQ-MI-----QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 452 FTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511
            T     +   LS L  L LRNN +  I   +FN    L  LD+GE + +  I     E 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
              L  LNL       D P  L  L  L+ L+++ N+  
Sbjct: 195 LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 52/292 (17%), Positives = 89/292 (30%), Gaps = 67/292 (22%)

Query: 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSC 320
           +N  YL+L +N +   +    F +L  L   +   NS+        +      GL     
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI------RQIEVGAFNGL----- 122

Query: 321 RLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS 380
                          LN L +    ++  IP           F                 
Sbjct: 123 -------------ASLNTLELFDNWLTV-IPSG--------AFEY--------------- 145

Query: 381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFFQLSK-NHFSGEIPDCWM 437
             +  +  L     L NN +  SI         F+   ++    L +           + 
Sbjct: 146 --LSKLREL----WLRNNPIE-SI-----PSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
               L+ LNL   N    +P ++  L  L  L +  N    I P SF+  + L+ L +  
Sbjct: 194 GLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           +++   I     +  + L+ LNL  N            L  L  L + +N  
Sbjct: 252 SQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 85/454 (18%), Positives = 140/454 (30%), Gaps = 90/454 (19%)

Query: 110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
             + Y+DLS N    +     S+L DL+FL ++       I +     L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 170 DELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGH 228
                          +     TG F  L+                 LE L L  C + G 
Sbjct: 90  ---------------QFLQLETGAFNGLAN----------------LEVLTLTQCNLDG- 117

Query: 229 MTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
                  FK L                      +LE L L  N +        F+N+ + 
Sbjct: 118 AVLSGNFFKPLT---------------------SLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 289 VTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA 348
                  N +        +    L     +   L     L L S   +    ++   +  
Sbjct: 157 HVLDLTFNKV------KSICEEDLLNFQGKHFTL-----LRLSS---ITLQDMNEYWLGW 202

Query: 349 KIPRRFWNSIFQYWFLNISGNQM--------YGGVPKFDSPSMPLVTNLGSIFDLSNNAL 400
           +     + +      L++SGN          +  +      S+ L  +        +   
Sbjct: 203 EKCGNPFKNTSITT-LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 401 SGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI 460
                +   +G   S  ++   LSK+     +   + ++  L  L L  N     +  + 
Sbjct: 262 K-DPDNFTFKGLEAS-GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318

Query: 461 -GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILN 519
              L+ L+ LNL  N L  I    F N   LE LD+  N +   +          L  L 
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELA 377

Query: 520 LRSNKF----HGDFPIQLCRLASLQILDVAYNNL 549
           L +N+      G F     RL SLQ + +  N  
Sbjct: 378 LDTNQLKSVPDGIF----DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 80/443 (18%), Positives = 149/443 (33%), Gaps = 73/443 (16%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFN 120
             +  + LS   +      S +    L  L + +      I +     L+SL  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL-ENLTSIQTLLLSGNDELGGKIPTS 179
           QF  +  G  + L +LE L+L    L G + S    + LTS++ L+L  N  +    P S
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148

Query: 180 FGRFCKLKSFSTGFTNLSQ-DISEI-LGIFSACVANELESLDLGSCQIFGHMTNQLGRFK 237
           F  F  ++ F     +L+   +  I               L L S          L    
Sbjct: 149 F--FLNMRRFHV--LDLTFNKVKSICEEDLLNFQGKHFTLLRLSS--------ITL---- 192

Query: 238 GLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
                D++   +      +  +  ++  LDLS N    ++++  F +       +    S
Sbjct: 193 ----QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQ----S 243

Query: 298 LIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS 357
           LI   + N       +  G  + +    F         +    +S ++I   + +  ++ 
Sbjct: 244 LILSNSYN-----MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSH 297

Query: 358 IFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN 417
                 L ++ N+                     I  + +NA  G              +
Sbjct: 298 FTDLEQLTLAQNE---------------------INKIDDNAFWGL------------TH 324

Query: 418 IEFFQLSKNHFSGEIPDCWMNW-PRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNR 475
           +    LS+N     I         +L +L+L  N+   +L       L +L  L L  N+
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 476 LSGIIPTSFNNFTILEALDMGEN 498
           L  +    F+  T L+ + +  N
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 58/302 (19%), Positives = 108/302 (35%), Gaps = 33/302 (10%)

Query: 10  SNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           +++ Y+DLS  +  +L+  +    S L  L+ L +                 L SL  LK
Sbjct: 30  AHVNYVDLSLNSIAELNETS---FSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILK 85

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRL-GNLTSLKYLDLSFNQFNSVV 126
           L + +       +    ++L  L L++    G  +       LTSL+ L L  N    + 
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 127 P-GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS---------GNDELGGKI 176
           P  +   +     L L  N+++ +I    L N       LL              LG + 
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
             +  +   + +         + +++    F A    +++SL L       +  N    F
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLIL------SNSYNMGSSF 256

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
              NF D  N T  G       + + ++  DLSK+++   + +  F + T L       N
Sbjct: 257 GHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN 309

Query: 297 SL 298
            +
Sbjct: 310 EI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 74/323 (22%), Positives = 117/323 (36%), Gaps = 48/323 (14%)

Query: 8   NLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
            LS+L  L L    F  L        +GL+ L+ L ++  NL  A  S      L SL+ 
Sbjct: 77  GLSSLIILKLDYNQFLQLETGA---FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 67  LKLSFCKLHHFPPLSS-ANFSSLTTLDLSEN--------EFQGQIPSRLG--NLTSLKYL 115
           L L    +    P S   N      LDL+ N        +             L+S+   
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS--LGLENLTSIQTLLLSGNDELG 173
           D++         G   K   +  L L  N  + +++         T IQ+L+LS +  +G
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 174 GKIPT------SFGRFCKLKSFSTGFTNLSQ-DISEI-LGIFSACVANELESLDLGSCQI 225
                          F  L++      +LS+  I  +   +FS     +LE L L   +I
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEI 311

Query: 226 -------FGHMTNQLGRFKGLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSKNELNG 275
                  F  +T+       L  L+LS     ++D  +  +L     LE LDLS N +  
Sbjct: 312 NKIDDNAFWGLTH-------LLKLNLSQNFLGSIDSRMFENLD---KLEVLDLSYNHI-R 360

Query: 276 TVSEIHFVNLTKLVTFRANGNSL 298
            + +  F+ L  L     + N L
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
           + S          NFK   +        S +K   +S   +     S+   +    L++L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQL 304

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVV 126
            L+  +++     +    + L  L+LS+N     I SR+  NL  L+ LDLS+N   ++ 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALG 363

Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
                 L +L+ L+L +N+L+ ++     + LTS+Q + L  N
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 45/360 (12%)

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQL 423
           +++S N +   + +     +  +  L     +        I +   +G     ++   +L
Sbjct: 35  VDLSLNSI-AELNETSFSRLQDLQFL----KVEQQTPGLVIRNNTFRG---LSSLIILKL 86

Query: 424 SKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS-LPMSI-GTLSSLMSLNLRNNRLSGIIP 481
             N F       +     L +L L   N  G+ L  +    L+SL  L LR+N +  I P
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 482 -TSFNNFTILEALDMGENELVGNIP--TWMGERFSRLIILNLRSNKFHGDFPIQLC---- 534
            + F N      LD+  N++  +I     +  +     +L L S          L     
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 535 ----RLASLQILDVAYNNLSGTIPRCI-NNFSAMATTDSSDQSNDIFYASLGDEKIVEDA 589
               +  S+  LD++ N    ++ +   +  +          ++    +S G     +  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 590 LLVMKGFLVEYKSILNL------------------VRGIDISKNNFSGEVPVEV-TNLQG 630
               KG         +L                  +  + +++N  + ++       L  
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 631 LQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
           L  LN S N     I   +   +  +E LD S N +     QS   L  L  L L  N L
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 47/292 (16%), Positives = 95/292 (32%), Gaps = 28/292 (9%)

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNR 475
           ++ +  LS N  +      +     L+ L +        +  +    LSSL+ L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 476 LSGIIPTSFNNFTILEALDMGENEL-VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL- 533
              +   +FN    LE L + +  L    +     +  + L +L LR N      P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 534 CRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM 593
             +    +LD+ +N +       + NF     T     S  +   +       +      
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSL-----NFSYNLFTGRIPDN 648
                        +  +D+S N F   +     +      +     + SYN+ +     N
Sbjct: 211 ----------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 649 IGVMR----------SIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
                           +++ D S +++   +    S+ + L  L L+ N +N
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 10  SNLQYLDLSGYN--FKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
           S ++  DLS  +  F L        S  + L+ L ++   ++K  D+      L  L +L
Sbjct: 275 SGVKTCDLS-KSKIFALLKSV---FSHFTDLEQLTLAQNEINKIDDN--AFWGLTHLLKL 328

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVV 126
            LS   L         N   L  LDLS N  +  +  +    L +LK L L  NQ  SV 
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 127 PGWLSKLNDLEFLSLQSNRLQ 147
            G   +L  L+ + L +N   
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 76/324 (23%)

Query: 8   NLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
            L++L+ L L   N K +   +      +     L ++   +    +  L+         
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASF--FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 67  LKLSFCKLHHFPPLSSA--------NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL--- 115
           L+LS   L                   +S+TTLDLS N F+  +  R  +  +   +   
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 116 ----------DLSFNQFNSVVPGWLSKL--NDLEFLSLQSNRLQGNISSLGLENLTSIQT 163
                           F          L  + ++   L  +++   +      + T ++ 
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQ 303

Query: 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGS 222
           L L+ N               ++       F  L+                 L  L+L  
Sbjct: 304 LTLAQN---------------EINKIDDNAFWGLTH----------------LLKLNLSQ 332

Query: 223 CQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSIPL-SLGQIANLEYLDLSKNELN 274
             +       F ++         L  LDLS   +  ++   S   + NL+ L L  N+L 
Sbjct: 333 NFLGSIDSRMFENLDK-------LEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK 384

Query: 275 GTVSEIHFVNLTKLVTFRANGNSL 298
            +V +  F  LT L     + N  
Sbjct: 385 -SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 65/455 (14%), Positives = 146/455 (32%), Gaps = 87/455 (19%)

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           +DLS  ++      S  ++ +L++L + +      +    F  L+ L+  + + N  +  
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ- 93

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRI-SAKIPRRFWNSIFQ 360
                +      GL                    L  L ++   +  A +   F+  +  
Sbjct: 94  -----LETGAFNGLA------------------NLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 361 YWFLNISGNQMYGGVPK--FDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNI 418
              L +  N +    P   F +     +     + DL+ N +       IC+ +      
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLN-----MRRFHVL-DLTFNKVK-----SICEED------ 173

Query: 419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478
                   HF+       +    + + ++           +    +S+ +L+L  N    
Sbjct: 174 -LLNFQGKHFT------LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 479 IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS 538
            +   F +      +      L+ +    MG  F      +  +  F G         + 
Sbjct: 227 SMAKRFFDAIAGTKIQ----SLILSNSYNMGSSFGHTNFKDPDNFTFKG------LEASG 276

Query: 539 LQILDVAYNNLSGTIPRCINNFSAMATTDSSD-QSNDIFYASLGDEKIVEDALLVMKGFL 597
           ++  D++ + +   + + +  FS     +      N+I        KI ++A        
Sbjct: 277 VKTCDLSKSKIF-ALLKSV--FSHFTDLEQLTLAQNEI-------NKIDDNAF------- 319

Query: 598 VEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSI 655
                 L  +  +++S+N     +   +  NL  L+ L+ SYN     + D     + ++
Sbjct: 320 ----WGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
           + L    NQL          L+ L  + L  N  +
Sbjct: 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 48/263 (18%), Positives = 86/263 (32%), Gaps = 39/263 (14%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
            + L +    +     +      L  L+ L+LS   +      +    ++L TL+L +N 
Sbjct: 66  TRLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 98  FQGQIPSR-LGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS-NRLQGNISSLGL 155
               IP+     L+ LK L L  N   S+     +++  L  L L    RL   IS    
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 156 ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL 215
           E L++++ L L+                  L+      T L +                L
Sbjct: 182 EGLSNLRYLNLAMC---------------NLREIPN-LTPLIK----------------L 209

Query: 216 ESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG 275
           + LDL    +             L  L +  + +      +   + +L  ++L+ N L  
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 276 TVSEIHFVNLTKLVTFRANGNSL 298
            +    F  L  L     + N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 8/168 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN-LSKASDSLLVINSL 61
                 LS L+ L L   N  + +      + +  L+ L +  +  LS  S+       L
Sbjct: 129 NGAFVYLSKLKELWLRN-N-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGL 184

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            +L+ L L+ C L   P L+      L  LDLS N      P     L  L+ L +  +Q
Sbjct: 185 SNLRYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
              +       L  L  ++L  N L   +       L  ++ + L  N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 47/247 (19%), Positives = 83/247 (33%), Gaps = 42/247 (17%)

Query: 3   PHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
            +   +L +L+ L LS  + + +        +GL+ L  L +    L+   +       L
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGA---FNGLANLNTLELFDNRLTTIPNGAF--VYL 135

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFN 120
             LKEL L    +   P  +     SL  LDL E +    I       L++L+YL+L+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
               +    L+ L  L+ L L  N L   I     + L  +Q L +  +           
Sbjct: 196 NLREI--PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS----------- 241

Query: 181 GRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
               +++      F NL                  L  ++L    +     +       L
Sbjct: 242 ----QIQVIERNAFDNLQS----------------LVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 240 NFLDLSN 246
             + L +
Sbjct: 282 ERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 27/223 (12%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            ++   L+L EN+ Q    +   +L  L+ L LS N   ++  G  + L +L  L L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKI----PTSFGRFCKLKSFSTGFTNLSQDI 200
           RL   I +     L+ ++ L L  N      I      +F R   L+    G       I
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNN-----PIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 201 SEILGIFSACVANELESLDLGSCQI-----FGHMTNQLGRFKGLNFLDLSNTTMDGSIPL 255
           SE  G F       L  L+L  C +        +         L+ LDLS   +    P 
Sbjct: 177 SE--GAFEGLSN--LRYLNLAMCNLREIPNLTPLIK-------LDELDLSGNHLSAIRPG 225

Query: 256 SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           S   + +L+ L + ++++   +    F NL  LV      N+L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
            +    + +L+ LDL     +L   +     GLS L++L ++  NL +  +    +  L 
Sbjct: 153 SYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPN----LTPLI 207

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFNQ 121
            L EL LS   L    P S      L  L + +++ Q  I      NL SL  ++L+ N 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQ 147
              +     + L+ LE + L  N   
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 55/250 (22%), Positives = 86/250 (34%), Gaps = 46/250 (18%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
              R+LNL  N        S   L  L  L L  N +  I   +FN    L  L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           L   IP       S+L  L LR+N           R+ SL+ LD+        I      
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----- 177

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                           F                           L+ +R ++++  N   
Sbjct: 178 -------------EGAFEG-------------------------LSNLRYLNLAMCNLR- 198

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFL 679
           E+P  +T L  L  L+ S N  +   P +   +  ++ L    +Q+      +  NL  L
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 680 NYLNLSNNNL 689
             +NL++NNL
Sbjct: 258 VEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 60/327 (18%), Positives = 111/327 (33%), Gaps = 58/327 (17%)

Query: 401 SGSIFHLICQG-------ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
           S     +IC         +  S N     L +N       + + +   L +L L  N+  
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513
                +   L++L +L L +NRL+ I   +F   + L+ L +  N +  +IP++   R  
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP 160

Query: 514 RLIILNL-RSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS 572
            L  L+L    +           L++L+ L++A  NL       I N + +         
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IPNLTPLI-------- 207

Query: 573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ 632
                                            L   +D+S N+ S   P     L  LQ
Sbjct: 208 --------------------------------KLDE-LDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 633 SLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN-- 690
            L    +       +    ++S+  ++ + N L+       + L  L  ++L +N  N  
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294

Query: 691 -GEIPSSTQLQSFGGSSFADNDLCGAP 716
              +  S  ++    S+ A    C  P
Sbjct: 295 CDILWLSWWIKDMAPSNTACCARCNTP 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 52/285 (18%), Positives = 88/285 (30%), Gaps = 60/285 (21%)

Query: 214 ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
               L+L   QI     N     + L  L LS   +      +   +ANL  L+L  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQ 333
             T+    FV L+KL       N +        +P +    +                  
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPI------ESIPSYAFNRI------------------ 159

Query: 334 KKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF 393
             L  L +   +  + I    +  +    +LN++   +   +P         +  L  + 
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTP-----LIKLDEL- 212

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
           DLS N LS                     +    F G           L+ L +  +   
Sbjct: 213 DLSGNHLS--------------------AIRPGSFQG--------LMHLQKLWMIQSQIQ 244

Query: 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
                +   L SL+ +NL +N L+ +    F     LE + +  N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 61/314 (19%), Positives = 95/314 (30%), Gaps = 85/314 (27%)

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
                 L+L    +      S   + +LE L LS+N +  T+    F  L  L T     
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
           N L        +P      L                   KL +L++ +  I + IP   +
Sbjct: 122 NRL------TTIPNGAFVYL------------------SKLKELWLRNNPIES-IPSYAF 156

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS 415
           N I     L++                                 LS              
Sbjct: 157 NRIPSLRRLDLG----------------------------ELKRLS-------------- 174

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
                  +S+  F G           LR LNL   N    +P ++  L  L  L+L  N 
Sbjct: 175 ------YISEGAFEG--------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH 218

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           LS I P SF     L+ L M ++++   I     +    L+ +NL  N            
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 536 LASLQILDVAYNNL 549
           L  L+ + + +N  
Sbjct: 278 LHHLERIHLHHNPW 291

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 54/294 (18%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              L+N   +       K +       + L  +  L      ++    ++  +  L +L 
Sbjct: 15  DPALANAIKIAAG----KSNVTDTVTQADLDGITTLSAFGTGVT----TIEGVQYLNNLI 66

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L+L   ++    PL   N + +T L+LS N    +  S +  L S+K LDL+  Q   V
Sbjct: 67  GLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
            P  L+ L++L+ L L  N++  NIS   L  LT++Q L +                  +
Sbjct: 123 TP--LAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNA---------------Q 162

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
           +   +    NLS+                L +L     +I     + L     L  + L 
Sbjct: 163 VSDLT-PLANLSK----------------LTTLKADDNKI--SDISPLASLPNLIEVHLK 203

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299
           N  +    PL+    +NL  + L+   +       +  NL      +    + I
Sbjct: 204 NNQISDVSPLA--NTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           L  LSNLQ L L           IS L+GL+ L++L I +  +S     L  + +L  L 
Sbjct: 125 LAGLSNLQVLYLDLNQIT----NISPLAGLTNLQYLSIGNAQVS----DLTPLANLSKLT 176

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            LK    K+    PL+  +  +L  + L  N+     P  L N ++L  + L+     + 
Sbjct: 177 TLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232

Query: 126 VPGWLSKLNDLEFLSLQSNRL--QGNISSLGLENLTSIQTLLLSGNDEL 172
              + + L     +   S        IS  G     ++   L S  + +
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 36/254 (14%), Positives = 85/254 (33%), Gaps = 43/254 (16%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
                  +    +N T ++      L  + +L+     ++ I          L  L++ +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 498 NEL--VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
           N++  +  +     +  +++  L L  N         +  L S++ LD+    ++     
Sbjct: 73  NQITDLAPL-----KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD---- 121

Query: 556 CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN 615
            +   + ++               L   +I           +     + NL + + I   
Sbjct: 122 -VTPLAGLSNLQ---------VLYLDLNQITN---------ISPLAGLTNL-QYLSIGNA 161

Query: 616 NFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN 675
             S   P+   NL  L +L    N  +      +  + ++  +    NQ+S   P  ++N
Sbjct: 162 QVSDLTPLA--NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 676 LSFLNYLNLSNNNL 689
            S L  + L+N  +
Sbjct: 216 TSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 41/274 (14%), Positives = 102/274 (37%), Gaps = 39/274 (14%)

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
            N       K++ +  +    +    +  L+      T ++   +  L++L+ L L++N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
           ++ + P    N T +  L++  N L  N+          +  L+L S +     P  L  
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595
           L++LQ+L +  N ++      I+  + +          ++ Y S+G+ ++ +   L    
Sbjct: 128 LSNLQVLYLDLNQITN-----ISPLAGL---------TNLQYLSIGNAQVSDLTPL---- 169

Query: 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655
                 + L+ +  +    N  S   P+   +L  L  ++   N  +      +    ++
Sbjct: 170 ------ANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD--VSPLANTSNL 219

Query: 656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689
             +  +   ++       +NL   N +   +   
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 44/294 (14%), Positives = 101/294 (34%), Gaps = 78/294 (26%)

Query: 257 LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG 316
              +AN   +   K+ +  TV++     +T L  F     + +  I              
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAF----GTGVTTIEG------------ 58

Query: 317 VRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP 376
                        +Q    L  L +   +I+  +      ++ +   L +SGN       
Sbjct: 59  -------------VQYLNNLIGLELKDNQIT-DLA--PLKNLTKITELELSGNP------ 96

Query: 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW 436
                       L ++  ++                   ++I+   L+    +   P   
Sbjct: 97  ------------LKNVSAIAGL-----------------QSIKTLDLTSTQITDVTPLAG 127

Query: 437 MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496
           +    L++L L  N  T ++   +  L++L  L++ N ++S + P    N + L  L   
Sbjct: 128 L--SNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
           +N++  +I          LI ++L++N+     P+     ++L I+ +    ++
Sbjct: 182 DNKIS-DISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTIT 230

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 31/163 (19%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 7   GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
             +++L Y+ L+  N       ++ +     +K L I++++ +  +     I+ L +L+ 
Sbjct: 41  AQMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHATNYN----PISGLSNLER 92

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVV 126
           L++    +      + +  +SLT LD+S +     I +++  L  +  +DLS+N   + +
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
              L  L +L+ L++Q + +  +    G+E+   +  L     
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH-DYR--GIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           +    N++ L ++  +        + +SGLS L+ L I   +++  SD +  ++ L SL 
Sbjct: 62  IEYAHNIKDLTINNIHAT----NYNPISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLT 115

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L +S                 + ++DLS N     I   L  L  LK L++ F+  +  
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY 174

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSL 153
               +     L  L   S      I   
Sbjct: 175 RG--IEDFPKLNQLYAFSQ----TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 14/186 (7%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            + K              ++ A  +SLT + L+           +    ++K L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             +  P  +S L++LE L +    +  +     L  LTS+  L +S +      I T   
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHS-AHDDSILTKIN 133

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              K+ S    +     DI  +  +       EL+SL++    +  H    +  F  LN 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTL------PELKSLNIQFDGV--HDYRGIEDFPKLNQ 185

Query: 242 LDLSNT 247
           L   + 
Sbjct: 186 LYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
             L  L +   + T     ++  L+SL  L++ ++     I T  N    + ++D+  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551
            + +I     +    L  LN++ +  H    I+      L  L      + G
Sbjct: 148 AITDIMPL--KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 42/192 (21%)

Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLL 166
              +     L  +   ++     +++N L +++L +     N++ L G+E   +I+ L +
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANI----NVTDLTGIEYAHNIKDLTI 73

Query: 167 SGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF 226
           +                    +++   + LS                 LE L +    + 
Sbjct: 74  NNI---------------HATNYN-PISGLSN----------------LERLRIMGKDVT 101

Query: 227 GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286
                 L     L  LD+S++  D SI   +  +  +  +DLS N     +  +    L 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK--TLP 159

Query: 287 KLVTFRANGNSL 298
           +L +     + +
Sbjct: 160 ELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
           L  + L N N T  L   I    ++  L + N   +   P   +  + LE L +   ++ 
Sbjct: 46  LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI 553
            +    +    + L +L++  +        ++  L  +  +D++YN     I
Sbjct: 102 SDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI 669
           + I+  + +   P+    L  L+ L       T     N+  + S+  LD S +     I
Sbjct: 71  LTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 670 PQSMSNLSFLNYLNLSNNNLNGEIPS 695
              ++ L  +N ++LS N    +I  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 85/264 (32%)

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTIL 490
            IPD        +         + +  ++   ++SL  + L N  ++ +  T       +
Sbjct: 16  NIPD-----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNI 68

Query: 491 EALDMGENEL--VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
           + L +          I        S L  L +       D    L  L SL +LD++++ 
Sbjct: 69  KDLTINNIHATNYNPI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR 608
              +I   IN                                               +  
Sbjct: 124 HDDSILTKINTLP-------------------------------------------KV-N 139

Query: 609 GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY 668
            ID+S N         +T++  L++L                    ++SL+   + +  Y
Sbjct: 140 SIDLSYNG-------AITDIMPLKTLP------------------ELKSLNIQFDGVHDY 174

Query: 669 IPQSMSNLSFLNYLNLSNNNLNGE 692
               + +   LN L   +  + G+
Sbjct: 175 RG--IEDFPKLNQLYAFSQTIGGK 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 8e-20
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 14/250 (5%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
              L    NLQ L L+  N  ++       S L  L+HL +S   LS  S S      L 
Sbjct: 69  NSDLQRCVNLQALVLT-SN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLS 124

Query: 63  SLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFN 120
           SL  L L           S  ++ + L  L +   +   +I  +    LT L+ L++  +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI---- 176
              S  P  L  + ++  L L   +    +  + ++  +S++ L L   D          
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
                   K  +F          + +++ + +    + L  L+    Q+         R 
Sbjct: 244 TGETNSLIKKFTFRNVKITDES-LFQVMKLLNQI--SGLLELEFSRNQLKSVPDGIFDRL 300

Query: 237 KGLNFLDLSN 246
             L  + L  
Sbjct: 301 TSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 13/245 (5%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
             ++ +LDLS N       S L    +L+ L L+ N  N++     S L  LE L L  N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI- 203
            L  N+SS   + L+S+  L L GN        TS   F  L              ++I 
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQ 166

Query: 204 LGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANL 263
              F+      LE L++ +  +  +    L   + ++ L L        + + +   +++
Sbjct: 167 RKDFAGLTF--LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 264 EYLDLSKNELNGT----VSEIHFVNLTKLVTFRANGNSL--IFKINPNWVPPFQLTGLGV 317
           E L+L   +L+      +S     +L K  TFR    +   +F++         L  L  
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284

Query: 318 RSCRL 322
              +L
Sbjct: 285 SRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 43/285 (15%), Positives = 94/285 (32%), Gaps = 24/285 (8%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLN 470
              ++ ++   LS N  +            L+ L L +N    ++      +L SL  L+
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 471 LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKF----- 525
           L  N LS +  + F   + L  L++  N       T +    ++L IL + +        
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 526 HGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKI 585
             DF      L  L+ L++  ++L    P+ + +   ++               L  ++ 
Sbjct: 167 RKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI------------LHMKQH 210

Query: 586 VEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRI 645
           +    + +          L          +  S      +      +++  +      ++
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 646 PDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690
              +  +  +  L+FS NQL          L+ L  + L  N  +
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 13/150 (8%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              L+ L+ L++   + + +      L  +  + HL +         +  + ++   S++
Sbjct: 170 FAGLTFLEELEIDASDLQSYEP--KSLKSIQNVSHLILHMKQHILLLE--IFVDVTSSVE 225

Query: 66  ELKLSFCKLHHFPP--LSSANFSS------LTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
            L+L    L  F    LS+   +S         + +++     Q+   L  ++ L  L+ 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
           S NQ  SV  G   +L  L+ + L +N   
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 58/292 (19%), Positives = 98/292 (33%), Gaps = 40/292 (13%)

Query: 214 ELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSK 270
            ++SLDL + +I     + L R   L  L L++    T++     SLG   +LE+LDLS 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG---SLEHLDLSY 109

Query: 271 NELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRF---- 326
           N L   +S   F  L+ L      GN    K          LT L +        F    
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 327 PLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLV 386
                    L +L I ++ +      +   SI     L +   Q    + +        V
Sbjct: 167 RKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSV 224

Query: 387 TNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLN 446
             L    +L +  L                   F +LS    +  I          R + 
Sbjct: 225 ECL----ELRDTDLD---------------TFHFSELSTGETNSLI-----KKFTFRNVK 260

Query: 447 LRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
           + + +    +   +  +S L+ L    N+L  +    F+  T L+ + +  N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 57/273 (20%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
             ++ L+L NN  T      +    +L +L L +N ++ I   SF++   LE LD+  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL-CRLASLQILDVAYNNLSGTIPRCIN 558
           L  N+ +   +  S L  LNL  N +       L   L  LQIL V   +    I R   
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--K 168

Query: 559 NFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFS 618
           +F+ +                                          L   ++I  ++  
Sbjct: 169 DFAGLT----------------------------------------FL-EELEIDASDLQ 187

Query: 619 GEVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNL 676
                +   ++Q +  L          + +    V  S+E L+     L  +    +S  
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 677 SF--------LNYLNLSNNNLNGEIPSSTQLQS 701
                        + +++ +L   +    Q+  
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 21/172 (12%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 394 DLSNNALSGSIFHLICQGENFSK--NIEFFQLSKNHFSGEIPD-CWMNWPRLRMLNLRNN 450
           +L  N         + +   FS    ++  ++       +I    +     L  L +  +
Sbjct: 130 NLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGN------- 503
           +     P S+ ++ ++  L L   +   ++    +  + +E L++ + +L          
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 504 IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
             T    +      + +            L +++ L  L+ + N L  ++P 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 74/252 (29%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
            R  +    + +   S+P  +    ++ SL+L NNR++ I  +       L+AL +  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           +                   +  + F          L SL+ LD++YN LS  +      
Sbjct: 88  IN-----------------TIEEDSFSS--------LGSLEHLDLSYNYLS-NLS----- 116

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                        +  F                        K + +L   +++  N +  
Sbjct: 117 -------------SSWF------------------------KPLSSLTF-LNLLGNPYKT 138

Query: 620 EVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNLS 677
                + ++L  LQ L         +I       +  +E L+  A+ L  Y P+S+ ++ 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 678 FLNYLNLSNNNL 689
            +++L L     
Sbjct: 199 NVSHLILHMKQH 210

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 55/294 (18%), Positives = 98/294 (33%), Gaps = 45/294 (15%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           L   +NL YL             +  ++ L+ L +L   +  L+K     L ++  P L 
Sbjct: 81  LSQNTNLTYLACDSNKLT----NLD-VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLT 130

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L  +   L     +  ++ + LT LD   N+   ++   +   T L  LD SFN+   +
Sbjct: 131 YLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT-SFGRFC 184
               +S+   L  L+  +N    NI+ L L     +  L  S N     K+         
Sbjct: 186 D---VSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSN-----KLTEIDVTPLT 233

Query: 185 KLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244
           +L  F      L++              ++L +L      +   +   L     L +   
Sbjct: 234 QLTYFDCSVNPLTE--------LDVSTLSKLTTLHCIQTDL---LEIDLTHNTQLIYFQA 282

Query: 245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
                   + ++      L  LD     +    +E+      KLV    N   L
Sbjct: 283 EGCRKIKELDVT--HNTQLYLLDCQAAGI----TELDLSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 57/300 (19%), Positives = 110/300 (36%), Gaps = 47/300 (15%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              L+ L  LD    +       ++ +  L+ L  L  +S N++      L ++   +L 
Sbjct: 38  EEQLATLTSLDCHNSSIT----DMTGIEKLTGLTKLICTSNNITT-----LDLSQNTNLT 88

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L     KL +         + LT L+   N+   ++   +     L YL+ + N    +
Sbjct: 89  YLACDSNKLTNLDV---TPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTEI 142

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT-SFGRFC 184
               +S    L  L    N+    I+ L +   T + TL  S N     KI      +  
Sbjct: 143 D---VSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFN-----KITELDVSQNK 191

Query: 185 KLKSFSTGFTNLSQ-DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243
            L   +    N+++ D+++           +L  LD  S ++       +     L + D
Sbjct: 192 LLNRLNCDTNNITKLDLNQ---------NIQLTFLDCSSNKL---TEIDVTPLTQLTYFD 239

Query: 244 LSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303
            S   +     L +  ++ L  L   + +L     EI   + T+L+ F+A G   I +++
Sbjct: 240 CSVNPL---TELDVSTLSKLTTLHCIQTDL----LEIDLTHNTQLIYFQAEGCRKIKELD 292

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 8e-14
 Identities = 50/294 (17%), Positives = 88/294 (29%), Gaps = 63/294 (21%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           + + + L  LD           T   ++  + L  L  S   +++     L ++    L 
Sbjct: 144 VSHNTQLTELDCHLNKKI----TKLDVTPQTQLTTLDCSFNKITE-----LDVSQNKLLN 194

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L      +     L       LT LD S N+   +I   +  LT L Y D S N    +
Sbjct: 195 RLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL 248

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
               +S L+ L  L         ++  + L + T +      G  ++             
Sbjct: 249 ---DVSTLSKLTTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIK------------ 289

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLS 245
                   T+ +Q                L  LD  +  I       L +   L +L L+
Sbjct: 290 ----ELDVTHNTQ----------------LYLLDCQAAGI---TELDLSQNPKLVYLYLN 326

Query: 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299
           NT +   + +S      L+ L      +    S +    +  L          I
Sbjct: 327 NTELT-ELDVS--HNTKLKSLSCVNAHIQ-DFSSVG--KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 62/489 (12%), Positives = 125/489 (25%), Gaps = 154/489 (31%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
            +      +  ++     +S    ++LT+LD   +         +  LT L  L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             ++    LS+  +L +L+  SN     +++L +  LT +  L    N            
Sbjct: 76  ITTLD---LSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNCDTN------------ 116

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              KL       +                    L  L+     +       +     L  
Sbjct: 117 ---KLTKLD--VSQNPL----------------LTYLNCARNTL---TEIDVSHNTQLTE 152

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           LD           L +     L  LD S N++    +E+       L     + N     
Sbjct: 153 LDCHLNKK--ITKLDVTPQTQLTTLDCSFNKI----TELDVSQNKLLNRLNCDTN----- 201

Query: 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY 361
                     +T L +                 +L  L  SS +++              
Sbjct: 202 ---------NITKLDLNQN-------------IQLTFLDCSSNKLTE------------- 226

Query: 362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421
             ++++                   T L + FD S N L+      +         +   
Sbjct: 227 --IDVTPL-----------------TQL-TYFDCSVNPLTELDVSTL-------SKLTTL 259

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481
              +     EI     +  +L             L   +   + L  L+ +   ++ +  
Sbjct: 260 HCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL-- 312

Query: 482 TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQI 541
              +    L  L +   EL                              + +     L+ 
Sbjct: 313 -DLSQNPKLVYLYLNNTELTE----------------------------LDVSHNTKLKS 343

Query: 542 LDVAYNNLS 550
           L     ++ 
Sbjct: 344 LSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 70/510 (13%), Positives = 152/510 (29%), Gaps = 122/510 (23%)

Query: 227 GHMTNQLGRFKGLNF--LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVN 284
           G   +    F   NF     +   M  +  +S  Q+A L  LD   + +   ++ I    
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIE--K 62

Query: 285 LTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISST 344
           LT L       N               +T L +                  L  L   S 
Sbjct: 63  LTGLTKLICTSN--------------NITTLDLSQN-------------TNLTYLACDSN 95

Query: 345 RISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI 404
           +++                L+++                   T L +  +   N L+   
Sbjct: 96  KLTN---------------LDVTPL-----------------TKL-TYLNCDTNKLTKLD 122

Query: 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464
                        + +   ++N  + EI     +  +L  L+   N     L   +   +
Sbjct: 123 VSQN-------PLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQT 170

Query: 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK 524
            L +L+   N+++ +     +   +L  L+   N +   +      +  +L  L+  SNK
Sbjct: 171 QLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNK 223

Query: 525 FHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEK 584
                 I +  L  L   D + N L+  +   ++  S + T        D+         
Sbjct: 224 LTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQ--TDL--------- 266

Query: 585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644
                             + +  + I            ++VT+   L  L+      T  
Sbjct: 267 --------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-- 310

Query: 645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGG 704
              ++     +  L  +  +L+  +   +S+ + L  L+  N ++  +  S  ++ +   
Sbjct: 311 -ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNN 365

Query: 705 SSFADNDLCGAPLPNCTKKSVLVTDDQNRI 734
           +  A+      P    T  S+ +    + +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 52/300 (17%), Positives = 95/300 (31%), Gaps = 58/300 (19%)

Query: 3   PHQLGNLSNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
                 L +L  L L      K+H       S L  L+ LYIS  +L +   +L      
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQKLYISKNHLVEIPPNL-----P 122

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ-GQIPSRLGNLTSLKYLDLSFN 120
            SL EL++   ++   P    +   ++  +++  N  +         +   L YL +S  
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
           +   +          L  L L  N++Q  I    L   + +  L L  N           
Sbjct: 183 KLTGIPKDLPET---LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN----------- 227

Query: 181 GRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
               +++    G  + L                  L  L L + ++   +   L   K L
Sbjct: 228 ----QIRMIENGSLSFLPT----------------LRELHLDNNKL-SRVPAGLPDLKLL 266

Query: 240 NFLDLSN---TTMDGSIPLSLG---QIANLEYLDLSKNELNGTVSEIH---FVNLTKLVT 290
             + L     T +  +    +G   + A    + L  N +     E+    F  +T  + 
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV--PYWEVQPATFRCVTDRLA 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 48/251 (19%), Positives = 82/251 (32%), Gaps = 45/251 (17%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
              L + + ++S+          L  L  L L   K+      + +    L  L +S+N 
Sbjct: 56  TTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLEN 157
              +IP  L   +SL  L +  N+   V  G  S L ++  + +  N L+ +    G  +
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 158 LTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQ------DISEI-LGIFSA 209
              +  L +S                 KL          L++       I  I L     
Sbjct: 171 GLKLNYLRISEA---------------KLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215

Query: 210 CVANELESLDLGSCQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIAN 262
              ++L  L LG  QI          +         L  L L N  +   +P  L  +  
Sbjct: 216 Y--SKLYRLGLGHNQIRMIENGSLSFLPT-------LRELHLDNNKLS-RVPAGLPDLKL 265

Query: 263 LEYLDLSKNEL 273
           L+ + L  N +
Sbjct: 266 LQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL------ 56
                 L N+  +++ G   +          GL L  +L IS   L+     L       
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL-NYLRISEAKLTGIPKDLPETLNEL 198

Query: 57  -------------VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP 103
                         +     L  L L   ++      S +   +L  L L  N+   ++P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 104 SRLGNLTSLKYLDLSFNQFNSVVPG------WLSKLNDLEFLSLQSNRLQ-GNISSLGLE 156
           + L +L  L+ + L  N    V         +  K      +SL +N +    +      
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 157 NLTSIQTLLLSGN 169
            +T    +     
Sbjct: 318 CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 49/296 (16%), Positives = 99/296 (33%), Gaps = 40/296 (13%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           +  S +     L  N  S    D +     L  L L NN  +     +   L  L  L +
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKF-HGDFP 530
             N L  I P   ++   L  L + +N +   +P  +      +  + +  N   +  F 
Sbjct: 110 SKNHLVEIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 531 IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590
                   L  L ++   L+  IP+  +    +         N I       + I  + L
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDH--NKI-------QAIELEDL 213

Query: 591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPDNI 649
           L              L R + +  N     +     + L  L+ L+   N  + R+P  +
Sbjct: 214 LRYS----------KLYR-LGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 650 GVMRSIESLDFSANQLSGYIPQSM-------SNLSFLNYLNLSNNNL-NGEIPSST 697
             ++ ++ +    N ++  +  +           ++ N ++L NN +   E+  +T
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 61/418 (14%), Positives = 122/418 (29%), Gaps = 125/418 (29%)

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
            L+ ++ S   L   P   S +    T LDL  N+           L  L  L L  N+ 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
           + +     S L  L+ L +  N L      +     +S+  L +  N             
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHL----VEIPPNLPSSLVELRIHDN------------- 133

Query: 183 FCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN- 240
             +++    G F+ L                  +  +++G   +  +   + G F GL  
Sbjct: 134 --RIRKVPKGVFSGLRN----------------MNCIEMGGNPL-ENSGFEPGAFDGLKL 174

Query: 241 -FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299
            +L +S   +   IP  L     L  L L  N++   +     +  +KL       N + 
Sbjct: 175 NYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI- 229

Query: 300 FKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIF 359
                  +    L+ L                    L +L++ + ++S ++P        
Sbjct: 230 -----RMIENGSLSFL------------------PTLRELHLDNNKLS-RVPAGL----- 260

Query: 360 QYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIE 419
                                P + L+  +     L  N ++                  
Sbjct: 261 ---------------------PDLKLLQVV----YLHTNNIT------------------ 277

Query: 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNR 475
             ++  N F        +       ++L NN        P +   ++  +++   N +
Sbjct: 278 --KVGVNDFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 53/309 (17%)

Query: 394 DLSNNALSGSIFHLICQGENFS--KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN 451
           DL NN +S  +     + ++F   +++    L  N  S      +    +L+ L +  N+
Sbjct: 60  DLQNNDIS-EL-----RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 452 FTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL-VGNIPTWMGE 510
               +P      SSL+ L + +NR+  +    F+    +  ++MG N L           
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-- 168

Query: 511 RFS--RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDS 568
            F   +L  L +   K  G   I      +L  L + +N +   I     +    +    
Sbjct: 169 -FDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQ-AIEL--EDLLRYSKLYR 221

Query: 569 SD-QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN 627
                N I         I   +L            +  L R + +  N  S  VP  + +
Sbjct: 222 LGLGHNQI-------RMIENGSL----------SFLPTL-RELHLDNNKLS-RVPAGLPD 262

Query: 628 LQGLQSLNFSYNLFTGRIPDNI-------GVMRSIESLDFSANQLSGY-IPQSM-SNLSF 678
           L+ LQ +    N  T ++  N                +    N +  + +  +    ++ 
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 679 LNYLNLSNN 687
              +   N 
Sbjct: 322 RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 62/422 (14%), Positives = 116/422 (27%), Gaps = 132/422 (31%)

Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
            L+ +  S     +V P  +S   D   L LQ+N +   +     + L  +  L+L  N 
Sbjct: 34  HLRVVQCSDLGLKAV-PKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN- 88

Query: 171 ELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
                         K+       F+ L +                L+ L +         
Sbjct: 89  --------------KISKIHEKAFSPLRK----------------LQKLYISK------- 111

Query: 230 TNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLV 289
            N L               +  ++P      ++L  L +  N +   V +  F  L  + 
Sbjct: 112 -NHL-------------VEIPPNLP------SSLVELRIHDNRIR-KVPKGVFSGLRNMN 150

Query: 290 TFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAK 349
                GN     +  +   P    GL                   KLN L IS  +++  
Sbjct: 151 CIEMGGN----PLENSGFEPGAFDGL-------------------KLNYLRISEAKLT-G 186

Query: 350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLIC 409
           IP+    ++ +   L++  N+                     I  +    L         
Sbjct: 187 IPKDLPETLNE---LHLDHNK---------------------IQAIELEDLLRY------ 216

Query: 410 QGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL 469
                   +    L  N             P LR L+L NN  +  +P  +  L  L  +
Sbjct: 217 ------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 470 NLRNNRLSGIIPTSF------NNFTILEALDMGENEL-VGNIPTWMGERFSRLIILNLRS 522
            L  N ++ +    F              + +  N +    +        +  + +   +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 523 NK 524
            K
Sbjct: 330 YK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 55/313 (17%), Positives = 104/313 (33%), Gaps = 71/313 (22%)

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           L  +  S+  +  ++P  +    +   LDL  N+++  + +  F  L  L       N +
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 299 IFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSI 358
                 + +     + L                  +KL  LYIS   +   IP    +S+
Sbjct: 91  ------SKIHEKAFSPL------------------RKLQKLYISKNHLVE-IPPNLPSSL 125

Query: 359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNI 418
            +   L I  N+                     I  +     SG             +N+
Sbjct: 126 VE---LRIHDNR---------------------IRKVPKGVFSGL------------RNM 149

Query: 419 EFFQLSKNHF-SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLS 477
              ++  N   +        +  +L  L +     T  +P       +L  L+L +N++ 
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ 206

Query: 478 GIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA 537
            I       ++ L  L +G N++   I          L  L+L +NK     P  L  L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 538 SLQILDVAYNNLS 550
            LQ++ +  NN++
Sbjct: 265 LLQVVYLHTNNIT 277

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 57/279 (20%), Positives = 103/279 (36%), Gaps = 35/279 (12%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
               +     +L   +           + L+ +  +  ++ ++         I  LP++ 
Sbjct: 20  DDAFAETIKDNLKKKSVT----DAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVT 71

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP--SRLGNLTSLKYLDLSFNQFN 123
           +L L+  KL    PL+  N  +L  L L EN    ++   S L +L  LK L L  N  +
Sbjct: 72  KLFLNGNKLTDIKPLA--NLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP--TSFG 181
            +    L  L  LE L L +N++  +I+   L  LT + TL L  N     +I       
Sbjct: 126 DING--LVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDN-----QISDIVPLA 175

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              KL++      ++S D+  + G+        L+ L+L S +      N        N 
Sbjct: 176 GLTKLQNLYLSKNHIS-DLRALAGL------KNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI 280
           +  ++ ++     +S         +     E    VS I
Sbjct: 229 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 50/243 (20%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
            ++     +  L    +      +    +S+  +  + ++ +  +   +  L ++  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 75

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLLSGNDELGGKI 176
           + N+   + P  L+ L +L +L L  N+    +  L  L++L  +++L L  N       
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHN------- 122

Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
                    +   + G  +L Q                LESL LG+ +I       L R 
Sbjct: 123 --------GISDIN-GLVHLPQ----------------LESLYLGNNKI--TDITVLSRL 155

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
             L+ L L +  +   I   L  +  L+ L LSKN ++  +  +    L  L        
Sbjct: 156 TKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALA--GLKNLDVLELFSQ 210

Query: 297 SLI 299
             +
Sbjct: 211 ECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 58/309 (18%), Positives = 91/309 (29%), Gaps = 76/309 (24%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P   E       +          F+     +L +      +      L S+  +  + + 
Sbjct: 2   PLGSETITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 57

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             SV    +  L ++  L L  N+L  +I    L NL ++  L L  N            
Sbjct: 58  IKSVQG--IQYLPNVTKLFLNGNKLT-DIK--PLANLKNLGWLFLDEN------------ 100

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              K+K  S    +L +                L+SL L    I     N L     L  
Sbjct: 101 ---KVKDLS-SLKDLKK----------------LKSLSLEHNGI--SDINGLVHLPQLES 138

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIH-FVNLTKLVTFRANGNSLIF 300
           L L N  +     LS  ++  L+ L L  N++    S+I     LTKL     + N  I 
Sbjct: 139 LYLGNNKITDITVLS--RLTKLDTLSLEDNQI----SDIVPLAGLTKLQNLYLSKNH-IS 191

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQ 360
            +                           L   K L+ L + S     K      N +  
Sbjct: 192 DLRA-------------------------LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 361 YWFLNISGN 369
               N  G+
Sbjct: 227 NTVKNTDGS 235

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 41/254 (16%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
            +      NL+  + T ++      L+S+  +   N+ +  +          +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557
           N+L  +I          L  L L  NK        L  L  L+ L + +N +S      I
Sbjct: 78  NKLT-DIKPL--ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-----DI 127

Query: 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617
           N    +           +    LG+ KI +          +   S L  +  + +  N  
Sbjct: 128 NGLVHL---------PQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQI 168

Query: 618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPD--NIGVMRSIESLDFSANQLSGYIPQSMSN 675
           S  VP+    L  LQ+L  S N     I D   +  +++++ L+  + +         SN
Sbjct: 169 SDIVPLA--GLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 676 LSFLNYLNLSNNNL 689
           L   N +  ++ +L
Sbjct: 223 LVVPNTVKNTDGSL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 10  SNLQYLDLSGYNF--KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
           S    LDLS +N   +L A+     + L+ L  L +S  +L+  S        +P+L+ L
Sbjct: 39  SYTALLDLS-HNNLSRLRAEWT--PTRLTNLHSLLLSHNHLNFISSE--AFVPVPNLRYL 93

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFNQFNSVV 126
            LS   LH       ++  +L  L L  N     +      ++  L+ L LS NQ +   
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 127 PG---WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI--QTLLLSGN 169
                  +KL  L  L L SN+L+  +    L+ L +     L L  N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWM--NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL 469
           ++         LS N+ S  +   W       L  L L +N+       +   + +L  L
Sbjct: 35  QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK---FH 526
           +L +N L  +    F++   LE L +  N +V  +     E  ++L  L L  N+   F 
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 527 GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573
            +      +L  L +LD++ N L       +    A         +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS----GSIFHLICQGENFSKNIE 419
           L++S N +     ++    +  + +L     LS+N L+     +   +         N+ 
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSL----LLSHNHLNFISSEAFVPV--------PNLR 91

Query: 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSG 478
           +  LS NH        + +   L +L L NN+    +  +    ++ L  L L  N++S 
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 479 IIPTSFNNF---TILEALDMGENELVGNIPTWMGERFSRL--IILNLRSNKFHGDFPIQL 533
                  +      L  LD+  N+L   +P    ++        L L +N    D     
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLECD----- 204

Query: 534 CRLASL 539
           C+L  L
Sbjct: 205 CKLYQL 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSK-ASDSLLVINSL 61
                +L  L+ L L   N  +     +    ++ L+ LY+S   +S+   + +   N L
Sbjct: 105 EFLFSDLQALEVLLLYN-N-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLT--TLDLSEN 96
           P L  L LS  KL   P        +     L L  N
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 62/339 (18%), Positives = 99/339 (29%), Gaps = 76/339 (22%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +P     L  L        +           +  S L  L+I    L+            
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP---------ALPSGLCKLWIFGNQLTSLP------VLP 140

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P L+EL +S  +L   P L     S L  L    N+    +P     L     L +S NQ
Sbjct: 141 PGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQ 192

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             S +P   S+L  L   + +   L    S L        + L++SGN  L   +P    
Sbjct: 193 LAS-LPTLPSELYKLWAYNNRLTSLPALPSGL--------KELIVSGN-RLTS-LPVLPS 241

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              +L       T+L    S             L SL +   Q+                
Sbjct: 242 ELKELMVSGNRLTSLPMLPS------------GLLSLSVYRNQL---------------- 273

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI-F 300
                      +P SL  +++   ++L  N L    SE     L ++ +       +I F
Sbjct: 274 ---------TRLPESLIHLSSETTVNLEGNPL----SERTLQALREITSAPGYSGPIIRF 320

Query: 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDL 339
            +     P          +  L P          + +  
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 65/367 (17%), Positives = 112/367 (30%), Gaps = 63/367 (17%)

Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
            +    L++         D +      + +  L I   NL+       +    P L+ L+
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL-----PAHITTLVIPDNNLTS------LPALPPELRTLE 87

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNL--------------TSLKY 114
           +S  +L   P         L+            +PS L  L                L+ 
Sbjct: 88  VSGNQLTSLPV-LPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQE 145

Query: 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG 174
           L +S NQ  S +P   S+L  L   + Q   L    S L        Q L +S N +L  
Sbjct: 146 LSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGL--------QELSVSDN-QL-A 194

Query: 175 KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLG 234
            +PT      KL +++   T+L    S             L+ L +   ++   +     
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSLPALPS------------GLKELIVSGNRL-TSLPVLPS 241

Query: 235 RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294
               L  L +S   +  S+P+       L  L + +N+L      +   +L+   T    
Sbjct: 242 E---LKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTRLPESLI--HLSSETTVNLE 292

Query: 295 GNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKL---NDLYISSTRISAKIP 351
           GN L  +            G      R         +  + L      ++   R     P
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

Query: 352 RRFWNSI 358
              W+  
Sbjct: 353 ADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 73/466 (15%), Positives = 133/466 (28%), Gaps = 137/466 (29%)

Query: 78  PPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137
             + +   +    L++ E+     +P  L     +  L +  N   S+ P    +L    
Sbjct: 32  QKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PALPPEL---R 84

Query: 138 FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
            L +  N+L                             +P       +L  FS   T+L 
Sbjct: 85  TLEVSGNQLT---------------------------SLPVLPPGLLELSIFSNPLTHLP 117

Query: 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL 257
              S             L  L +   Q+                          S+P+  
Sbjct: 118 ALPSG------------LCKLWIFGNQL-------------------------TSLPVLP 140

Query: 258 GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV 317
                L+ L +S N+L    +      L KL    A  N              QLT L  
Sbjct: 141 P---GLQELSVSDNQLASLPALPS--ELCKL---WAYNN--------------QLTSL-- 176

Query: 318 RSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPK 377
                    P+       L +L +S  ++++ +P        + + L    N++   +P 
Sbjct: 177 ---------PMLPSG---LQELSVSDNQLAS-LP----TLPSELYKLWAYNNRLTS-LP- 217

Query: 378 FDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWM 437
                  L + L  +  +S N L+ S+  L          ++   +S N  +  +P    
Sbjct: 218 ------ALPSGLKEL-IVSGNRLT-SLPVLPS-------ELKELMVSGNRLT-SLPMLPS 261

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
               L  L++  N  T  LP S+  LSS  ++NL  N LS     +    T         
Sbjct: 262 G---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

Query: 498 NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILD 543
                   +   E  +   +    ++        +        +  
Sbjct: 318 IRFDMAGASAPRETRA---LHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 44/268 (16%), Positives = 81/268 (30%), Gaps = 36/268 (13%)

Query: 436 WMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495
           W  W R                M     +    LN+  + L+ +      +   +  L +
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVI 68

Query: 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
            +N L  ++P         L  L +  N+     P+    L  L I      +L      
Sbjct: 69  PDNNLT-SLP----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG 122

Query: 556 CIN-NFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISK 614
                      T        +   S+ D ++    L  +   L +          +    
Sbjct: 123 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS--LPALPSELCK----------LWAYN 170

Query: 615 NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674
           N  +  +P+  +    LQ L+ S N     +P        +  L    N+L+  +P   S
Sbjct: 171 NQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPS 221

Query: 675 NLSFLNYLNLSNNNLNGEIPSS-TQLQS 701
            L     L +S N L   +P   ++L+ 
Sbjct: 222 GLK---ELIVSGNRLT-SLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 67/361 (18%), Positives = 120/361 (33%), Gaps = 81/361 (22%)

Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
             + ++    AC+ N    L++G   +   + + L     +  L + +  +  S+P    
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPP 81

Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
               L  L++S N+L  ++       L +L  F      L                    
Sbjct: 82  ---ELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHL-------------------- 116

Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
                P  P        L  L+I   +++  +P            L++S NQ+   +P  
Sbjct: 117 -----PALP------SGLCKLWIFGNQLT-SLP----VLPPGLQELSVSDNQL-ASLP-- 157

Query: 379 DSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMN 438
                  +  L       NN L+ S+  L          ++   +S N  +  +P     
Sbjct: 158 --ALPSELCKL----WAYNNQLT-SLPMLPS-------GLQELSVSDNQLA-SLPT---L 199

Query: 439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
              L  L   NN  T SLP        L  L +  NRL+ + P   +    L+ L +  N
Sbjct: 200 PSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTSL-PVLPSE---LKELMVSGN 251

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN 558
            L  ++P         L+ L++  N+     P  L  L+S   +++  N LS        
Sbjct: 252 RLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQAL 304

Query: 559 N 559
            
Sbjct: 305 R 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.9 bits (184), Expect = 5e-14
 Identities = 61/367 (16%), Positives = 118/367 (32%), Gaps = 96/367 (26%)

Query: 334 KKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF 393
             +  L I    ++  +P        +   L +SGNQ+            P +  L SIF
Sbjct: 61  AHITTLVIPDNNLT-SLP----ALPPELRTLEVSGNQL-----TSLPVLPPGLLEL-SIF 109

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
                 L                 +    +  N  +  +P        L+ L++ +N   
Sbjct: 110 SNPLTHLPALP-----------SGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA 154

Query: 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513
            SLP     L  L      NN+L+ + P   +    L+ L + +N+L  ++PT       
Sbjct: 155 -SLPALPSELCKL---WAYNNQLTSL-PMLPSG---LQELSVSDNQLA-SLPTLPS---- 201

Query: 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573
            L  L   +N+     P        L+ L V+ N L+ ++P   +               
Sbjct: 202 ELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSEL------------- 243

Query: 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQS 633
                                             + + +S N  +  +P+      GL S
Sbjct: 244 ----------------------------------KELMVSGNRLT-SLPML---PSGLLS 265

Query: 634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEI 693
           L+   N  T R+P+++  + S  +++   N LS    Q++  ++     +      +   
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 694 PSSTQLQ 700
            S+ +  
Sbjct: 325 ASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 53/286 (18%), Positives = 91/286 (31%), Gaps = 41/286 (14%)

Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
              LQ L +S           S  +  S L  L+  +  L+       +      L+EL 
Sbjct: 140 PPGLQELSVSDNQLA------SLPALPSELCKLWAYNNQLTS------LPMLPSGLQELS 187

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
           +S  +L   P L     S L  L    N     +P+    L     L +S N+  S+   
Sbjct: 188 VSDNQLASLPTL----PSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLTSLPVL 239

Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188
                ++L+ L +  NRL     SL     + + +L +  N  L  ++P S        +
Sbjct: 240 ----PSELKELMVSGNRLT----SLP-MLPSGLLSLSVYRNQ-L-TRLPESLIHLSSETT 288

Query: 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTT 248
            +     LS      L       +    S  +    + G    +  R        L    
Sbjct: 289 VNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETR-------ALHLAA 338

Query: 249 MDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294
            D  +P   G+ A  +   +   E N     +    L++   F  +
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKD 384

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687
             G   LN   +  T  +PD +     I +L    N L+  +P     L     L +S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 688 NLNGEIPSS-TQLQSFGGSSFADNDL 712
            L   +P     L      S     L
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL 116

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 9/174 (5%)

Query: 5   QLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL--P 62
           ++  +S LQ L L        A      +    L  L + +V+ +     L  +     P
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR----LGNLTSLKYLDLS 118
            LK L ++     +F       F +L+TLDLS+N   G+             +L+ L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 119 FNQFNS---VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
                +   V     +    L+ L L  N L+    +   +  + + +L LS  
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 393 FDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF 452
            +L N + +     L    +     ++   +++ H      +    +P L  L+L +N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 453 TGSLPMSI----GTLSSLMSLNLRNNR---LSGIIPTSFNNFTILEALDMGENELVGNIP 505
            G   +          +L  L LRN      SG+          L+ LD+  N L     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551
               +  S+L  LNL                A L +LD++YN L  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 42/173 (24%), Positives = 52/173 (30%), Gaps = 34/173 (19%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
               Q+     L  LDLS  N            G   L                 L    
Sbjct: 164 FSCEQVRVFPALSTLDLS-DNP---------ELGERGLIS--------------ALCPLK 199

Query: 61  LPSLKELKLSFCKLHHFP---PLSSANFSSLTTLDLSENEFQGQIP-SRLGNLTSLKYLD 116
            P+L+ L L    +          +A    L  LDLS N  +           + L  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           LSF     V  G  +K   L  L L  NRL  N S   L  +     L L GN
Sbjct: 260 LSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDELPQV---GNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 45/262 (17%), Positives = 80/262 (30%), Gaps = 35/262 (13%)

Query: 441 RLRMLNLRNNNFTGSLP---MSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI--LEALDM 495
            L+ L +R       +    + +  +S L  L L N  ++G  P      T   L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 496 GENELVGN---IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552
                      +          L +L++           Q+    +L  LD++ N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 553 IP----RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR 608
                  C   F  +      +                   +    G      +    ++
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAG-----------------METPSGVCSALAAARVQLQ 231

Query: 609 GIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG 667
           G+D+S N+               L SLN S+     ++P  +     +  LD S N+L  
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288

Query: 668 YIPQSMSNLSFLNYLNLSNNNL 689
             P S   L  +  L+L  N  
Sbjct: 289 -NP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 48/293 (16%), Positives = 90/293 (30%), Gaps = 23/293 (7%)

Query: 271 NELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLW- 329
           N L     E++    +     +            + +    L  L VR+ R+  R     
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 330 --LQSQKKLNDLYISSTRISAKIPRRFWNSIF-QYWFLNISGNQMYGGVPKFDSPSMPLV 386
             +     L +L + +  ++   P     +       LN+                  L 
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 387 TNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP----DCWMNWPRL 442
             L  +  ++         +  C+       +    LS N   GE       C + +P L
Sbjct: 149 PGL-KVLSIAQA----HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 443 RMLNLRNNNFT---GSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGEN 498
           ++L LRN       G           L  L+L +N L       S +  + L +L++   
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551
            L   +P  +    ++L +L+L  N+     P     L  +  L +  N    
Sbjct: 264 GLKQ-VPKGL---PAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 43/256 (16%), Positives = 74/256 (28%), Gaps = 26/256 (10%)

Query: 235 RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTV-SEIHFVNLTKLVTFRA 293
             K L        +      L +  I+ L+ L L   E+ GT    +       L     
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 294 NGNSLIFKINPNWVPPFQ------LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS 347
              S        W+   Q      L  L +            ++    L+ L +S     
Sbjct: 129 RNVSWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 348 AKIPRRFWNSIFQYWF-----LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG 402
            +      +++    F     L +    M        S        L    DLS+N+L  
Sbjct: 187 GERG--LISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQL-QGLDLSHNSLRD 242

Query: 403 SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT 462
           +     C    +   +    LS      ++P       +L +L+L  N      P S   
Sbjct: 243 AAGAPSCD---WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNP-SPDE 294

Query: 463 LSSLMSLNLRNNRLSG 478
           L  + +L+L+ N    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 40/230 (17%), Positives = 65/230 (28%), Gaps = 13/230 (5%)

Query: 80  LSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLND---L 136
           L     S    L   + E      + +    SLK L +   +  S +     ++     L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 137 EFLSLQSNRLQGNI-SSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTN 195
           + L+L++  + G     L       +  L L                  +         +
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLS 155

Query: 196 LSQDISEILGIFSACVANELESLDLGSCQIFGHM----TNQLGRFKGLNFLDLSN---TT 248
           ++Q  S         V   L +LDL      G           +F  L  L L N    T
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 249 MDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
             G           L+ LDLS N L            ++L +   +   L
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 42/264 (15%), Positives = 76/264 (28%), Gaps = 41/264 (15%)

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNN 451
            +    +   I     +    S  ++   L     +G  P        P L +LNLRN +
Sbjct: 74  TVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 452 FTGSLP----MSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP-- 505
           +         +       L  L++               F  L  LD+ +N  +G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 506 -TWMGERFSRLIILNLRSNKFH---GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
                 +F  L +L LR+       G           LQ LD+++N+L         ++ 
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 562 AMATTD--SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
           +   +   S      +                         K +   +  +D+S N    
Sbjct: 253 SQLNSLNLSFTGLKQVP------------------------KGLPAKLSVLDLSYNRLD- 287

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTG 643
             P     L  + +L+   N F  
Sbjct: 288 RNPSP-DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 45/266 (16%), Positives = 68/266 (25%), Gaps = 24/266 (9%)

Query: 435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494
           C  + P+    +  N      + +  G  S    L   +        T       L+ L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 495 MGENELVGNIPTWMGE--RFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552
           +    +   I          S L  L L + +  G  P  L       +  +   N+S  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 553 IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI 612
                             +   I  A   +             F  E   +   +  +D+
Sbjct: 135 TRDAWLA-ELQQWLKPGLKVLSIAQAHSLN-------------FSCEQVRVFPALSTLDL 180

Query: 613 SKNNFSGEVPVEVT----NLQGLQSLNFSYNLFT---GRIPDNIGVMRSIESLDFSANQL 665
           S N   GE  +           LQ L           G           ++ LD S N L
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 666 SGYIPQSM-SNLSFLNYLNLSNNNLN 690
                       S LN LNLS   L 
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 29/122 (23%), Positives = 38/122 (31%), Gaps = 32/122 (26%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           +          LQ LDLS +N                         +L  A+ +    + 
Sbjct: 219 VCSALAAARVQLQGLDLS-HN-------------------------SLRDAAGAPS-CDW 251

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
              L  L LSF  L   P       + L+ LDLS N      PS    L  +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGN 306

Query: 121 QF 122
            F
Sbjct: 307 PF 308

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 42/242 (17%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFN 120
            S K L LSF  L H    S  +F  L  LDLS  E Q  I      +L+ L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
              S+  G  S L+ L+ L      L  ++ +  + +L +++ L ++ N           
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN----------- 134

Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
                 K     F+NL+                 LE LDL S +I    +      + L+
Sbjct: 135 -LIQSFKLPEY-FSNLTN----------------LEHLDLSSNKI---QSIYCTDLRVLH 173

Query: 241 FLDLSNTTMD------GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294
            + L N ++D        I     +   L+ L L  N+L  +V +  F  LT L     +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232

Query: 295 GN 296
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 33/195 (16%)

Query: 3   PHQLGNLSNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
            +   +   LQ LDLS    + +          LS L  L ++   +   +      + L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQSLALG--AFSGL 99

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFN 120
            SL++L      L         +  +L  L+++ N  Q  ++P    NLT+L++LDLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 121 QFNSVVPGWLSKLNDLEF----LSLQSNRLQG-------------------NISSL---G 154
           +  S+    L  L+ +      L L  N +                      + S+    
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 155 LENLTSIQTLLLSGN 169
            + LTS+Q + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 45/253 (17%), Positives = 77/253 (30%), Gaps = 55/253 (21%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
            + L+L  N        S  +   L  L+L    +  I   ++ + + L  L +  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI- 88

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHG--DFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
            ++        S L  L           +FPI    L +L+ L+VA+N +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLI---------- 136

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                    S +  + F ++L                        NL   +D+S N    
Sbjct: 137 --------QSFKLPEYF-SNLT-----------------------NLEH-LDLSSNKIQ- 162

Query: 620 EVPVEV----TNLQGLQ-SLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674
            +          +  L  SL+ S N     I         ++ L    NQL         
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 675 NLSFLNYLNLSNN 687
            L+ L  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 394 DLSNNALS----GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRN 449
           DLS   +     G+   L         ++    L+ N         +     L+ L    
Sbjct: 58  DLSRCEIQTIEDGAYQSL--------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 450 NNFTGSLPMSIGTLSSLMSLNLRNNRLSGII-PTSFNNFTILEALDMGENELVGNIPTWM 508
            N        IG L +L  LN+ +N +     P  F+N T LE LD+  N++  +I    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Query: 509 GERFSRLII----LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
                ++ +    L+L  N  +        +   L+ L +  N L  ++P 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 7   GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK- 65
           G+L  L+ L+++ +N         + S L+ L+HL +SS  +     +   +  L  +  
Sbjct: 121 GHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPL 177

Query: 66  ---ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
               L LS   ++   P +      L  L L  N+ +         LTSL+ + L  N +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

Query: 123 N 123
           +
Sbjct: 237 D 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              LS +Q  +    N +    +++ +   + LK L++S   +S  S     +  L  L+
Sbjct: 37  QKELSGVQNFNGDNSNIQ----SLAGMQFFTNLKELHLSHNQISDLSP----LKDLTKLE 88

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
           EL ++  +L +   + SA    L+ L L  NE +      L +L +L+ L +  N+  S+
Sbjct: 89  ELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI 143

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLLSGN 169
           V   L  L+ LE L L  N     I++  GL  L  +  + L+G 
Sbjct: 144 VM--LGFLSKLEVLDLHGN----EITNTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 22/166 (13%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
              L+N    +L   +       +     LS +++    + N+   +     +    +LK
Sbjct: 15  DPGLANAVKQNLGKQSVT----DLVSQKELSGVQNFNGDNSNIQSLAG----MQFFTNLK 66

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNL--TSLKYLDLSFNQFN 123
           EL LS  ++    PL   + + L  L ++ N    ++   L  +    L  L L  N+  
Sbjct: 67  ELHLSHNQISDLSPLK--DLTKLEELSVNRN----RL-KNLNGIPSACLSRLFLDNNELR 119

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
                 L  L +LE LS+++N+L+ +I    L  L+ ++ L L GN
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 29  ISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSL 88
           +    GL+      +   +++           L  ++        +     +    F++L
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSLAGMQ--FFTNL 65

Query: 89  TTLDLSENEFQGQIP--SRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
             L LS N    QI   S L +LT L+ L ++ N+        L  LN +    L    L
Sbjct: 66  KELHLSHN----QISDLSPLKDLTKLEELSVNRNR--------LKNLNGIPSACLSRLFL 113

Query: 147 QGN-ISSL-GLENLTSIQTLLLSGN 169
             N +     L +L +++ L +  N
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSL--LKHLYISSVNLSKASDSLLVINSLPS 63
           L +L+ L+ L ++          +  L+G+    L  L++ +  L         +  L +
Sbjct: 81  LKDLTKLEELSVNRNR-------LKNLNGIPSACLSRLFLDNNELRDTDS----LIHLKN 129

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
           L+ L +   KL     L     S L  LDL  NE        L  L  + ++DL+  +  
Sbjct: 130 LEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
           +    +  +L     +     R    IS   + N  S     +    
Sbjct: 186 NEPVKYQPELYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWEL 229

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 45/169 (26%), Positives = 65/169 (38%), Gaps = 13/169 (7%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSL-LVINSL 61
              L   + L  L+L           +     L +L  L +S   L     SL L+  +L
Sbjct: 48  LATLMPYTRLTQLNLDRAELT----KLQVDGTLPVLGTLDLSHNQLQ----SLPLLGQTL 99

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFN 120
           P+L  L +SF +L   P  +      L  L L  NE +  +P  L      L+ L L+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
               +  G L+ L +L+ L LQ N L   I   G      +    L GN
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENE 97
              L++S   L   S + L       L +L L   +L             L TLDLS N+
Sbjct: 33  TTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQ 88

Query: 98  FQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLEN 157
            Q  +P     L +L  LD+SFN+  S+  G L  L +L+ L L+ N L+  +    L  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 158 LTSIQTLLLSGN 169
              ++ L L+ N
Sbjct: 147 TPKLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 50/218 (22%), Positives = 72/218 (33%), Gaps = 51/218 (23%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
                L LS   L+ F   +   ++ LT L+L     +       G L  L  LDLS NQ
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
             S +P     L  L  L +  NRL  ++    L  L  +Q L L GN            
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN------------ 134

Query: 182 RFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQI-------FGHMTNQL 233
              +LK+   G  T   +                LE L L +  +          + N  
Sbjct: 135 ---ELKTLPPGLLTPTPK----------------LEKLSLANNNLTELPAGLLNGLEN-- 173

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
                L+ L L   ++  +IP        L +  L  N
Sbjct: 174 -----LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 42/226 (18%), Positives = 61/226 (26%), Gaps = 54/226 (23%)

Query: 81  SSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS 140
             +  +S   ++  +      +P  L        L LS N   +     L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDI 200
           L    L        L  L    TL LS N               +L+S       L    
Sbjct: 62  LDRAELTKLQVDGTLPVLG---TLDLSHN---------------QLQSLPLLGQTLPA-- 101

Query: 201 SEILGIFSACVANELESLDLGSCQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSI 253
                         L  LD+   ++          +         L  L L    +  ++
Sbjct: 102 --------------LTVLDVSFNRLTSLPLGALRGLGE-------LQELYLKGNELK-TL 139

Query: 254 PLSL-GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           P  L      LE L L+ N L   +       L  L T     NSL
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
           P L  L+L +N    SLP+   TL +L  L++  NRL+ +   +      L+ L +  NE
Sbjct: 77  PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
           L   +P  +     +L  L+L +N       G        L +L  L +  N+L  TIP+
Sbjct: 136 LK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN----GLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
           +N    N T +LP  +        L+L  N L      +   +T L  L++   EL   +
Sbjct: 15  VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKL 70

Query: 505 PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
                     L  L+L  N+     P+    L +L +LDV++N L+ ++P 
Sbjct: 71  QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
             +L+L  N        ++   + L  LNL    L+ +         +L  LD+  N+L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ 90

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP 554
            ++P  +G+    L +L++  N+        L  L  LQ L +  N L  T+P
Sbjct: 91  -SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 5e-16
 Identities = 57/326 (17%), Positives = 111/326 (34%), Gaps = 79/326 (24%)

Query: 383 MPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLS---KNHFSGEIPDCWMNW 439
           M ++  + + F LS N+   +I        +     E   L    +N     + +C +N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
            +   L L   N + SLP ++     +  L +  N L   +P    +   LE LD  +N 
Sbjct: 60  -QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
           L   +P    E  + L  L++ +N+     P        L+ ++   N L+  +P     
Sbjct: 112 LS-TLP----ELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP----- 156

Query: 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
                                                    +   +L   + +  N  + 
Sbjct: 157 -----------------------------------------ELPTSL-EVLSVRNNQLT- 173

Query: 620 EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIES----LDFSANQLSGYIPQSMSN 675
            +P      + L++L+ S NL    +P         E          N+++ +IP+++ +
Sbjct: 174 FLP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 676 LSFLNYLNLSNNNLNGEIPSSTQLQS 701
           L     + L +N L+  I  S   Q+
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 52/337 (15%), Positives = 101/337 (29%), Gaps = 59/337 (17%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           I   + N  +L            +AD   + S     +   +   N ++A  SLL    +
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYAD---YFSAWDKWEKQALPGENRNEAV-SLLKECLI 58

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
               EL+L+   L   P         +T L++++N     +P    +L    YLD   N+
Sbjct: 59  NQFSELQLNRLNLSSLPD---NLPPQITVLEITQNALI-SLPELPASLE---YLDACDNR 111

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            ++ +P   + L     L + +N+L    + L  E    ++ +    N            
Sbjct: 112 LST-LPELPASLKH---LDVDNNQL----TMLP-ELPALLEYINADNN------------ 150

Query: 182 RFCKLKSFSTGFTNLSQ-DISE-ILGIFSACVANELESLDLGSCQI------FGHMTNQL 233
              +L       T+L    +    L        + LE+LD+ +  +           +  
Sbjct: 151 ---QLTMLPELPTSLEVLSVRNNQLTFLPELPES-LEALDVSTNLLESLPAVPVRNHHSE 206

Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
              +   F       +   IP ++  +     + L  N L    S     +L++      
Sbjct: 207 ---ETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL----SSRIRESLSQQ----- 253

Query: 294 NGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWL 330
              +      P                 L      W 
Sbjct: 254 --TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 1e-11
 Identities = 62/333 (18%), Positives = 114/333 (34%), Gaps = 63/333 (18%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
           SI L +    +L   +   N ++GT ++  F    K       G +             +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADY-FSAWDKWEKQALPGENRN-----------E 48

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
              L ++ C +            + ++L ++   +S+ +P      I     L I+ N +
Sbjct: 49  AVSL-LKECLI-----------NQFSELQLNRLNLSS-LPDNLPPQI---TVLEITQNAL 92

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE 431
              +P        L  +L    D  +N LS ++  L         +++   +  N  +  
Sbjct: 93  -ISLP-------ELPASL-EYLDACDNRLS-TLPELPA-------SLKHLDVDNNQLT-M 134

Query: 432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE 491
           +P+       L  +N  NN  T  LP       SL  L++RNN+L+ + P    +   LE
Sbjct: 135 LPELPAL---LEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTFL-PELPES---LE 183

Query: 492 ALDMGENELVGNIPTWMGERFS---RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
           ALD+  N L  ++P             I    R N+     P  +  L     + +  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLG 581
           LS  I   ++  +A            +      
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 37/287 (12%), Positives = 79/287 (27%), Gaps = 39/287 (13%)

Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSL--------------LKHLYISSVNLSKASDS 54
            ++L++LD+      +  +  + L  ++               L+ L + +  L+   + 
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL 178

Query: 55  LLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTT---LDLSENEFQGQIPSRLGNLTS 111
                   SL+ L +S   L   P +   N  S  T       EN     IP  + +L  
Sbjct: 179 P------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 112 LKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDE 171
              + L  N  +S +   LS+                +       +      +     + 
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 172 LGGKIPT------------SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD 219
               +              +F  F    S +    N S    ++        A+      
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQ 351

Query: 220 LGSCQIFGHMTNQLG---RFKGLNFLDLSNTTMDGSIPLSLGQIANL 263
             +       + +      +  L    L +   +G      G + +L
Sbjct: 352 SFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 8e-10
 Identities = 49/318 (15%), Positives = 92/318 (28%), Gaps = 80/318 (25%)

Query: 193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL------GRFKGLNFLDLSN 246
           +  +S   ++    +      + E   L          N+             + L L+ 
Sbjct: 19  YNTISGTYADYFSAWD-----KWEKQALPGENR-----NEAVSLLKECLINQFSELQLNR 68

Query: 247 TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI--HFVNLTKLVTFRANGNSLIFKINP 304
             +  S+P +L     +  L++++N L      +     +L  L    A  N L      
Sbjct: 69  LNLS-SLPDNLPP--QITVLEITQNAL----ISLPELPASLEYL---DACDNRL------ 112

Query: 305 NWVP--PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYW 362
           + +P  P  L  L V + +L    P        L  +   + +++  +P           
Sbjct: 113 STLPELPASLKHLDVDNNQL-TMLPELPAL---LEYINADNNQLTM-LP----ELPTSLE 163

Query: 363 FLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQ 422
            L++  NQ+   +P        L  +L    D+S N L                      
Sbjct: 164 VLSVRNNQL-TFLP-------ELPESL-EALDVSTNLLE--------------------- 193

Query: 423 LSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPT 482
                          +         R N  T  +P +I +L    ++ L +N LS  I  
Sbjct: 194 ----SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 483 SFNNFTILEALDMGENEL 500
           S +  T            
Sbjct: 249 SLSQQTAQPDYHGPRIYF 266

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN-LSKASDSLLVINSL 61
                   +L+ +++S  N  L        S L  L  + I   N L   +       +L
Sbjct: 47  KGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNL 103

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTS-LKYLDLSF 119
           P+L+ L +S   + H P +   +      LD+ +N     I       L+     L L+ 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           N    +     +     E     +N L+  + +      +    L +S  
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRT 212

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 40/247 (16%)

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDL 117
           +   +  EL+    KL      + + F  L  +++S+N+    I +    NL  L  + +
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 118 S-FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI 176
              N    + P     L +L++L + +  ++ ++  +   +      L +  N       
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI------ 139

Query: 177 PTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR 235
                    + +     F  LS                E   L L    I          
Sbjct: 140 --------NIHTIERNSFVGLS---------------FESVILWLNKNGI---QEIHNSA 173

Query: 236 FKGLN---FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292
           F G          N  ++          +    LD+S+  ++ ++      NL KL    
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232

Query: 293 ANGNSLI 299
                 +
Sbjct: 233 TYNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 55/377 (14%), Positives = 104/377 (27%), Gaps = 92/377 (24%)

Query: 87  SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
           S       E++   +IPS L    +   L     +   +  G  S   DLE + +  N +
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 147 QGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILG 205
              I +    NL  +  + +   +               L   +   F NL         
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKAN--------------NLLYINPEAFQNLPN------- 105

Query: 206 IFSACVANELESLDLGSCQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL- 257
                    L+ L + +  I         H             LD+ +     +I  +  
Sbjct: 106 ---------LQYLLISNTGIKHLPDVHKIHSLQ-------KVLLDIQDNINIHTIERNSF 149

Query: 258 -GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG 316
            G       L L+KN +   +    F N T+L     + N+ + ++  +           
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDNNNLEELPND----------- 196

Query: 317 VRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP 376
                                 L IS TRI   +P     ++ +    +    +    +P
Sbjct: 197 ------------VFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKK---LP 240

Query: 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW 436
             +      +  L     L+         H      N+ + I       N         +
Sbjct: 241 TLEK-----LVALMEA-SLTYP------SHCCAFA-NWRRQISELHPICNKSILRQEVDY 287

Query: 437 MNWPRLRMLNLRNNNFT 453
           M   R +  +L  +N +
Sbjct: 288 MTQARGQRSSLAEDNES 304

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 35/265 (13%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
           R+   + +  T  +P  +    + + L     +L  I   +F+ F  LE +++ +N+++ 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 503 NIPTWMGERFSRLIILNL-RSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
            I   +     +L  + + ++N      P     L +LQ L ++   +   +P       
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD------ 121

Query: 562 AMATTDSSDQSNDIFYASLGD----EKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617
                     S       + D      I  ++             +      + ++KN  
Sbjct: 122 -----VHKIHSLQKVLLDIQDNINIHTIERNSF----------VGLSFESVILWLNKNGI 166

Query: 618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIPQSMSNL 676
             E+     N   L  LN S N     +P+++         LD S  ++       + NL
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 677 SFLNYLNLSNNNLNGEIPSSTQLQS 701
             L   +  N     ++P+  +L +
Sbjct: 226 KKLRARSTYNLK---KLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 31/253 (12%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTS-FNNFTILEALDMGEN 498
                L             +      L  + +  N +  +I    F+N   L  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN 558
             +  I     +    L  L + +        +         +LD+  N    TI R  N
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N 147

Query: 559 NFSAMA--TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN 616
           +F  ++  +       N I       ++I   A            +   L        NN
Sbjct: 148 SFVGLSFESVILWLNKNGI-------QEIHNSAF-----------NGTQLDELNLSDNNN 189

Query: 617 FSGEVPVEV-TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF-SANQLSGYIPQSMS 674
              E+P +V     G   L+ S       +P     + +++ L   S   L   +P ++ 
Sbjct: 190 LE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP-TLE 243

Query: 675 NLSFLNYLNLSNN 687
            L  L   +L+  
Sbjct: 244 KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 60/288 (20%)

Query: 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295
            +    L    T +      +     +LE +++S+N++   +    F NL KL   R   
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 296 NSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
            + +  I      P     L                    L  L IS+T I   +P    
Sbjct: 89  ANNLLYI-----NPEAFQNL------------------PNLQYLLISNTGIK-HLPDVHK 124

Query: 356 NSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFS 415
               Q   L+I  N                     +I  +  N+  G            S
Sbjct: 125 IHSLQKVLLDIQDN--------------------INIHTIERNSFVG-----------LS 153

Query: 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
                  L+KN         +       +    NNN            S  + L++   R
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 476 LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN 523
           +  +      N   L A      + +  +     E+   L+  +L   
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYP 256

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLS 118
            LP L+++  S  K+      +    S +  + L+ N  +  +  ++   L SLK L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
            N+   V       L+ +  LSL  N++   ++    + L S+ TL L  N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
               EL+L+  +               L  ++ S N+            + +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           +  +V       L  L+ L L+SNR+   + +     L+S++ L L  N
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%)

Query: 445 LNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGN 503
           L L NN FT      I   L  L  +N  NN+++ I   +F   + +  + +  N L  N
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 504 IPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
           +   M +    L  L LRSN+     +  F      L+S+++L +  N ++ T+  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI----GLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
            L  L+ ++ S  N K+         G S +  + ++S  L        +   L SLK L
Sbjct: 55  KLPQLRKINFS--NNKITDIEEGAFEGASGVNEILLTSNRLENVQHK--MFKGLESLKTL 110

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
            L   ++      S    SS+  L L +N+     P     L SL  L+L  N FN
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 59/189 (31%)

Query: 110 TSLKYLDLSFNQFNSVVP-GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSG 168
                L L+ N+F  +   G   KL  L  ++  +N++  +I     E  + +  +LL+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 169 NDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFG 227
           N               +L++     F  L                  L++L L S     
Sbjct: 91  N---------------RLENVQHKMFKGLES----------------LKTLMLRS----- 114

Query: 228 HMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTK 287
              N++      +F+ LS                ++  L L  N++  TV+   F  L  
Sbjct: 115 ---NRITCVGNDSFIGLS----------------SVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 288 LVTFRANGN 296
           L T     N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 440 PRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
             +  + L +N    ++   +   L SL +L LR+NR++ +   SF   + +  L + +N
Sbjct: 81  SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
           ++   +     +    L  LNL +N F+ +     C LA L
Sbjct: 140 QIT-TVAPGAFDTLHSLSTLNLLANPFNCN-----CYLAWL 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
            L+ L+ L L+  N KL          L  L+ L+++   L        V + L +L EL
Sbjct: 59  RLTKLRLLYLN-DN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIG--VFDQLVNLAEL 114

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVV 126
           +L   +L   PP    + + LT L L  NE Q  +P  +   LTSLK L L  NQ   V 
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
            G   KL +L+ L L +N+L+  +     ++L  ++ L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 10  SNLQYLDLSGYNF-KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           ++ + LDL       L +        L+ L+ LY++   L        +   L +L+ L 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNKLQTLPAG--IFKELKNLETLW 91

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVVP 127
           ++  KL   P        +L  L L  N+ +  +P R+  +LT L YL L +N+  S+  
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 128 GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           G   KL  L+ L L +N+L+  +     + LT ++TL L  N
Sbjct: 151 GVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 50/221 (22%)

Query: 85  FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            +    LDL  N+           LT L+ L L+ N+  ++  G   +L +LE L +  N
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 145 RLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEI 203
           +LQ  +     + L ++  L L  N               +LKS     F +L++     
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRN---------------QLKSLPPRVFDSLTK----- 134

Query: 204 LGIFSACVANELESLDLGSCQI-------FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS 256
                      L  L LG  ++       F  +T+       L  L L N  +   +P  
Sbjct: 135 -----------LTYLSLGYNELQSLPKGVFDKLTS-------LKELRLYNNQL-KRVPEG 175

Query: 257 L-GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
              ++  L+ L L  N+L   V E  F +L KL   +   N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501
            + L+L++N  +     +   L+ L  L L +N+L  +    F     LE L + +N+L 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 502 GNIPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIP 554
             +P  + ++   L  L L  N+        F      L  L  L + YN L  ++P
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----SLTKLTYLSLGYNELQ-SLP 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 29/181 (16%)

Query: 397 NNAL----------SGSIFHLICQGENFSK-------NIEFFQLSKNHFSGEIPDCWMNW 439
           N AL          + +   + C  +  +        + +   L  N  S      +   
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60

Query: 440 PRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
            +LR+L L +N    +LP  I   L +L +L + +N+L  +    F+    L  L +  N
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIP 554
           +L  ++P  + +  ++L  L+L  N+      G F     +L SL+ L +  N L   +P
Sbjct: 120 QLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLK-RVP 173

Query: 555 R 555
            
Sbjct: 174 E 174

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKAS---DSLLV 57
           + P     L  +  L  +        +T+ + S L  +  +  + ++  ++    ++ ++
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117
                 ++ L L+   L     L       +T LDLS N  +  +P  L  L  L+ L  
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493

Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           S N   +V    ++ L  L+ L L +NRLQ + +   L +   +  L L GN
Sbjct: 494 SDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 45/293 (15%), Positives = 83/293 (28%), Gaps = 72/293 (24%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
                    L   +LS     +    +     L  L+               L +I  + 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMR 393

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
           +L  L      L +F  L + +      LD   ++F  +          ++ L L+    
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
             +    L +L  +  L L  NRL+  +    L  L  ++ L  S N             
Sbjct: 454 TVLCH--LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDN------------- 496

Query: 183 FCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFL 242
              L++   G  NL +                L+ L L +        N+L +   +   
Sbjct: 497 --ALENVD-GVANLPR----------------LQELLLCN--------NRLQQSAAI--- 526

Query: 243 DLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV-----NLTKLVT 290
                         L     L  L+L  N L         +     +++ ++T
Sbjct: 527 ------------QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 328 LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVT 387
             L   +       S+T                      S  ++    P+     + ++ 
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNL 447
            + ++  L       ++ +             +    ++ F  E     M +  +R+L+L
Sbjct: 391 LMRALDPLLY--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 448 RNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL--VGNIP 505
            + + T  L   +  L  +  L+L +NRL  + P +      LE L   +N L  V  + 
Sbjct: 449 AHKDLT-VLC-HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDGV- 504

Query: 506 TWMGERFSRLIILNLRSNKFHG-DFPIQLCRLASLQILDVAYNNLS 550
                   RL  L L +N+         L     L +L++  N+L 
Sbjct: 505 ----ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 44/267 (16%), Positives = 72/267 (26%), Gaps = 71/267 (26%)

Query: 41  LYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG 100
               S    +     L +     L+    S  +L    P +     ++  L +   +   
Sbjct: 341 WCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII-LLMRALDPLL 399

Query: 101 QIPSRLGNLTSLKYLD--------LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS 152
                L   ++LK +D           ++F         +  D+  L L        ++ 
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD----LTV 455

Query: 153 L-GLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACV 211
           L  LE L  +  L LS N               +L++       L               
Sbjct: 456 LCHLEQLLLVTHLDLSHN---------------RLRALPPALAALRC------------- 487

Query: 212 ANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
              LE L            N L    G+  L                    L+ L L  N
Sbjct: 488 ---LEVLQASD--------NALENVDGVANLP------------------RLQELLLCNN 518

Query: 272 ELNGTVSEIHFVNLTKLVTFRANGNSL 298
            L  + +    V+  +LV     GNSL
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 40/274 (14%), Positives = 84/274 (30%), Gaps = 32/274 (11%)

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRL 476
           ++    L+           W      +   L  +           T   L    L   + 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKS 361

Query: 477 SGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536
           + ++ +   +   L+ L     E                IIL +R+          L   
Sbjct: 362 T-VLQSELESCKELQEL-----EPENKWCLLT-------IILLMRALDPLLYEKETLQYF 408

Query: 537 ASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGF 596
           ++L+ +D     +       + +   +  +    +  D+    L  + +           
Sbjct: 409 STLKAVD----PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------- 455

Query: 597 LVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656
            + +   L LV  +D+S N     +P  +  L+ L+ L  S N     +   +  +  ++
Sbjct: 456 -LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 657 SLDFSANQLSGY-IPQSMSNLSFLNYLNLSNNNL 689
            L    N+L      Q + +   L  LNL  N+L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS 666
           VR + ++  + +  V   +  L  +  L+ S+N     +P  +  +R +E L  S N L 
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

Query: 667 GYIPQSMSNLSFLNYLNLSNNNLN 690
             +   ++NL  L  L L NN L 
Sbjct: 500 -NVD-GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
            ++ F  E  V       ++ L+ ++   T  +  ++  +  +  LD S N+L   +P +
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPA 481

Query: 673 MSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           ++ L  L  L  S+N L   +     L  
Sbjct: 482 LAALRCLEVLQASDNALE-NVDGVANLPR 509

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 38/234 (16%)

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSF 119
            PS + LKL    L   P  + +N  +++ + +S +    Q+ S    NL+ + ++++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 120 NQF-NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
            +    + P  L +L  L+FL + +  L+       + +      L ++ N  +   IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM-TSIPV 148

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
           +             F  L                NE  +L L +       + Q   F G
Sbjct: 149 NA------------FQGLC---------------NETLTLKLYNNGF---TSVQGYAFNG 178

Query: 239 LN--FLDLSNTTMDGSIPLSL--GQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
                + L+       I      G  +    LD+S+  +   +      +L +L
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 38/171 (22%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLP 62
            H   NL N+  + +S  +  L          LS + H+ I +       D    +  LP
Sbjct: 48  SHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELP 105

Query: 63  SLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR-LGNLTS-LKYLDLSF 119
            LK L +    L  FP L+   +      L++++N +   IP      L +    L L  
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTS-IQTLLLSGN 169
           N F SV     +    L+ + L  N+    I       + S    L +S  
Sbjct: 166 NGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 8   NLSNLQYLDLSGYNF--KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
           NLS + ++++        +  D    L  L LLK L I +  L    D L  + S     
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDA---LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFF 133

Query: 66  ELKLSF-CKLHHFPPLSSANFSSLT-TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF- 122
            L+++    +   P  +     + T TL L  N F   +     N T L  + L+ N++ 
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 123 NSVVPGWLSKL-NDLEFLSLQSNRLQGNISSLGLENLTSIQTL 164
             +       + +    L +    +   + S GLE+L  +   
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 41/253 (16%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
             +   +    +P       S  +L L    L  I   +F+N   +  + +  +  +  +
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 505 PTWMGERFSRLIILNLRSNK---------FHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
            +      S++  + +R+ +                    L  L+ L +    L    P 
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE--------LPLLKFLGIFNTGLK-MFPD 122

Query: 556 CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN 615
               +S           N           I  +A           + + N    + +  N
Sbjct: 123 LTKVYSTDIFFILEITDNPYM------TSIPVNAF----------QGLCNETLTLKLYNN 166

Query: 616 NFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI--GVMRSIESLDFSANQLSGYIPQSM 673
            F+  V     N   L ++  + N +   I  +   GV      LD S   ++    + +
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 674 SNLSFLNYLNLSN 686
            +L  L   N   
Sbjct: 226 EHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 440 PRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGE 497
            ++  + +RN      +       L  L  L + N  L      T   +  I   L++ +
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 498 NELVGNIPTWMGERF-SRLIILNLRSNKFH----GDFPIQLCRLASLQILDVAYNNLSGT 552
           N  + +IP    +   +  + L L +N F       F         L  + +  N     
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-----NGTKLDAVYLNKNKYLTV 194

Query: 553 IPR 555
           I +
Sbjct: 195 IDK 197

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 13  QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC 72
           + LDL      L   + +   GL+ L  L +    L   S    V + L  L  L L+  
Sbjct: 38  EKLDLQ-ST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANN 93

Query: 73  KLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVVPGWLS 131
           +L   P     + + L  L L  N+ +  +PS +   LT LK L L+ NQ  S+  G   
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 132 KLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           KL +L+ LSL +N+LQ ++     + L  +QT+ L GN
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 54/214 (25%), Positives = 76/214 (35%), Gaps = 68/214 (31%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
             LDL          +    LT L +L+L +NQ  ++  G    L +L  L L +N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 149 NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIF 207
           ++     ++LT +  L L GN               +LKS  +G F  L++         
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGN---------------QLKSLPSGVFDRLTK--------- 132

Query: 208 SACVANELESLDLGSCQIFGHMTNQL-----GRFKGLNFLDLSNTTMDGSIPLSLGQIAN 262
                  L+ L L         TNQL     G F  L                      N
Sbjct: 133 -------LKELRLN--------TNQLQSIPAGAFDKL---------------------TN 156

Query: 263 LEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
           L+ L LS N+L  +V    F  L KL T    GN
Sbjct: 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
           L+L++         +   L+ L  LNL  N+L  +    F++ T L  L +  N+L  ++
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 505 PTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLS 550
           P  + +  ++L  L L  N+      G F     RL  L+ L +  N L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFD----RLTKLKELRLNTNQLQ 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFN 120
            ++ E++L    +   PP + + +  L  +DLS N+   ++       L SL  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           +   +       L  L+ L L +N++   +     ++L ++  L L  N
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 8   NLSNLQYLDLSGYNF--KLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
               L+ +DLS  N   +L  D      GL  L  L +    +++   S  +   L SL+
Sbjct: 54  PYKKLRRIDLS-NNQISELAPDA---FQGLRSLNSLVLYGNKITELPKS--LFEGLFSLQ 107

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
            L L+  K++     +  +  +L  L L +N+ Q         L +++ + L+ N F 
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
             + L  N      P +      L  ++L NN++S + P +F     L +L +  N++  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 503 NIPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
            +P  + E    L +L L +NK        F      L +L +L +  N L  TI +
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ----DLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 413 NFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNL 471
           N  + I   +L +N      P  +  + +LR ++L NN  +  L       L SL SL L
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL 87

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
             N+++ +  + F     L+ L +  N++   +     +    L +L+L  NK       
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 532 QLCRLASLQILDVAYNN 548
               L ++Q + +   N
Sbjct: 147 TFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 440 PRLRMLNLRNNNFTGSLPMSI-GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
             L  L L  N  T  LP S+   L SL  L L  N+++ +   +F +   L  L + +N
Sbjct: 80  RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL 539
           +L   I          +  ++L  N F  D     C L  L
Sbjct: 139 KL-QTIAKGTFSPLRAIQTMHLAQNPFICD-----CHLKWL 173

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 63/302 (20%), Positives = 100/302 (33%), Gaps = 46/302 (15%)

Query: 10  SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL--VINSLPSLKEL 67
            ++Q LD+        A     L  L   + + +    L++A    +   +   P+L EL
Sbjct: 3   LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 68  KLSFCKLHH------FPPLSSANFSSLTTLDLSENEFQGQ----IPSRLGNLTSLKYLDL 117
            L   +L           L + +   +  L L      G     + S L  L +L+ L L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPS-CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 118 SFNQFN-----SVVPGWLSKLNDLEFLSLQSNRLQGNIS----SLGLENLTSIQTLLLSG 168
           S N         +  G L     LE L L+   L    S    +  L      + L +S 
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSN 179

Query: 169 ND-------ELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANE-LESLDL 220
           ND        L   +  S    C+L++       ++ D    L       +   L  L L
Sbjct: 180 NDINEAGVRVLCQGLKDS---PCQLEALKLESCGVTSDNCRDLC--GIVASKASLRELAL 234

Query: 221 GSCQIFGHMTNQLGRF-----KGLNFLDLSNT--TMDGSIPLS--LGQIANLEYLDLSKN 271
           GS ++      +L          L  L +     T  G   L   L    +L+ L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 272 EL 273
           EL
Sbjct: 295 EL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 9e-11
 Identities = 66/307 (21%), Positives = 106/307 (34%), Gaps = 44/307 (14%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSL-----LKHLYISSVNLSKASDSLL--VI 58
           L  L  LQ L LS  +  L    +  L    L     L+ L +   +LS AS   L  V+
Sbjct: 109 LRTLPTLQELHLS--DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 59  NSLPSLKELKLSFCKLHH--FPPLSSA---NFSSLTTLDLSENEFQGQ----IPSRLGNL 109
            + P  KEL +S   ++      L      +   L  L L            +   + + 
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 110 TSLKYLDLSFNQF-----NSVVPGWLSKLNDLEFLSLQSNRLQGN-ISSLG--LENLTSI 161
            SL+ L L  N+        + PG L   + L  L +    +       L   L    S+
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 162 QTLLLSGNDELGGKIPTSFGRF-----CKLKSFSTGFTNLSQDISEILGIFSACVANE-L 215
           + L L+GN+ LG +             C+L+S      + +          S    N  L
Sbjct: 287 KELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS--SVLAQNRFL 343

Query: 216 ESLDLGSCQIFGHMTNQLGRF-----KGLNFLDLSNT--TMDGSIPLS--LGQIANLEYL 266
             L + + ++      +L +        L  L L++   +      L+  L    +L  L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 267 DLSKNEL 273
           DLS N L
Sbjct: 404 DLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 84/504 (16%), Positives = 157/504 (31%), Gaps = 110/504 (21%)

Query: 38  LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLH--HFPPLSSA--NFSSLTTLDL 93
           ++ L I    LS A  + L +  L   + ++L  C L       +SSA     +L  L+L
Sbjct: 5   IQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 94  SENEFQGQIPSRLGNL-----TSLKYLDLSFNQFNSVVPGW------LSKLNDLEFLSLQ 142
             NE        +          ++ L L          G       L  L  L+ L L 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA--GCGVLSSTLRTLPTLQELHLS 121

Query: 143 SNRLQG----NISSLGLENLTSIQTLLLSGN---DELGGKIPTSFGRFCKLKSFSTGFTN 195
            N L       +    L+    ++ L L            + +        K  +    +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 196 LSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPL 255
           +++    +L         +LE+L L SC +                      T D    L
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGV----------------------TSDNCRDL 219

Query: 256 S--LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLT 313
              +   A+L  L L  N+L     ++    L   +            ++P+     +L 
Sbjct: 220 CGIVASKASLRELALGSNKL----GDVGMAELCPGL------------LHPSS----RLR 259

Query: 314 GLGVRSCRLGPR----FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY----WFLN 365
            L +  C +  +        L++++ L +L ++   +  +  R    ++ +       L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 366 ISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK 425
           +             S  +     L     +SNN L  +    +CQG           L +
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFL-LELQISNNRLEDAGVRELCQG-----------LGQ 367

Query: 426 NHFSGEIPDCWMNWPRLRMLNLRNNNFT----GSLPMSIGTLSSLMSLNLRNNRLS---- 477
                           LR+L L + + +     SL  ++    SL  L+L NN L     
Sbjct: 368 PG------------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415

Query: 478 -GIIPTSFNNFTILEALDMGENEL 500
             ++ +      +LE L + +   
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 58/305 (19%), Positives = 92/305 (30%), Gaps = 38/305 (12%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTI--SWLSGLSLLKHLYISSVNLSKASDSLLV---INS 60
           L     L+ L L   +    +     S L      K L +S+ ++++A   +L     +S
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 61  LPSLKELKLSFCKLHHF--PPLSSA--NFSSLTTLDLSENEFQGQ-----IPSRLGNLTS 111
              L+ LKL  C +       L     + +SL  L L  N+          P  L   + 
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 112 LKYLDLSFNQFNSVVPGW------LSKLNDLEFLSLQSNRLQG----NISSLGLENLTSI 161
           L+ L +      +   G       L     L+ LSL  N L       +    LE    +
Sbjct: 258 LRTLWIWECGITAK--GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 162 QTLLLSGN---DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESL 218
           ++L +              +   +   L         L       L        + L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 219 DLGSCQI----FGHMTNQLGRFKGLNFLDLSNTTMD--GSIPLSLGQIAN---LEYLDLS 269
            L  C +       +   L     L  LDLSN  +   G + L          LE L L 
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435

Query: 270 KNELN 274
               +
Sbjct: 436 DIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.0 bits (141), Expect = 7e-09
 Identities = 63/306 (20%), Positives = 95/306 (31%), Gaps = 42/306 (13%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSL----LKHLYISSVNLSKASDSLL--VIN 59
           L     L  L+L              L GL      ++ L + +  L+ A   +L   + 
Sbjct: 52  LRVNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 60  SLPSLKELKLSFCKLHH--FPPLSSA---NFSSLTTLDLSENEFQGQ----IPSRLGNLT 110
           +LP+L+EL LS   L       L          L  L L            + S L    
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 111 SLKYLDLSFNQFNSVVPGWLSK-LND----LEFLSLQSNRL---QGNISSLGLENLTSIQ 162
             K L +S N  N      L + L D    LE L L+S  +           + +  S++
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 163 TLLLSGNDELGGK-----IPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANE-LE 216
            L L  N  LG        P       +L++       ++        +     A E L+
Sbjct: 231 ELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAK--GCGDLCRVLRAKESLK 287

Query: 217 SLDLGSCQIFGHMTNQLGRF-----KGLNFLDLSNT--TMDGSIPLS--LGQIANLEYLD 267
            L L   ++       L          L  L + +   T       S  L Q   L  L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 268 LSKNEL 273
           +S N L
Sbjct: 348 ISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 55/336 (16%), Positives = 106/336 (31%), Gaps = 49/336 (14%)

Query: 394 DLSNNALSGSIFHLICQG-ENFSKNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLR 448
           +L +N L     H + QG +  S  I+   L     +G     +       P L+ L+L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 449 NNNFTGSLPMSIGTL-----SSLMSLNLRNNRLSGI----IPTSFNNFTILEALDMGENE 499
           +N    +    +          L  L L    LS      + +        + L +  N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 500 L----VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ-----LCRLASLQILDVAYNNLS 550
           +    V  +   + +   +L  L L S         +     +   ASL+ L +  N L 
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGI 610
                 +     +    S  ++  I+   +  +   +   +     L   +S+  L    
Sbjct: 241 DVGMAEL--CPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-----LRAKESLKEL---- 289

Query: 611 DISKNNFSGE-----VPVEVTNLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFS 661
            ++ N    E         +     L+SL      FT          +   R +  L  S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 662 ANQLSG----YIPQSM-SNLSFLNYLNLSNNNLNGE 692
            N+L       + Q +    S L  L L++ +++  
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 71/455 (15%), Positives = 130/455 (28%), Gaps = 86/455 (18%)

Query: 135 DLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN---DELGGKIPTSFGRFCKLKSFST 191
           D++ L +Q   L     +  L  L   Q + L      +     I ++      L   + 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG 251
               L       +       + +++ L L +C +                      T  G
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL----------------------TGAG 101

Query: 252 SIPLS--LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
              LS  L  +  L+ L LS N L           L  L     +               
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDA-------GLQLLCEGLLDPQC------------ 142

Query: 310 FQLTGLGVRSCRLGPR----FPLWLQSQKKLNDLYISSTRISAK----IPRRFWNSIFQY 361
            +L  L +  C L           L+++    +L +S+  I+      + +   +S  Q 
Sbjct: 143 -RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 362 WFLNISGNQMYG-GVPKFDS--PSMPLVTNLGSIFDLSNNALSGSIFHLICQG-ENFSKN 417
             L +    +             S   +  L     L +N L       +C G  + S  
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLREL----ALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 418 IEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGSLPMSIG-----TLSSLMS 468
           +    + +   + +    +         L+ L+L  N         +          L S
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 469 LNLRNNRLSG----IIPTSFNNFTILEALDMGENEL----VGNIPTWMGERFSRLIILNL 520
           L +++   +        +       L  L +  N L    V  +   +G+  S L +L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 521 RSNKFHGDFPIQ-----LCRLASLQILDVAYNNLS 550
                  D         L    SL+ LD++ N L 
Sbjct: 378 ADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 40/312 (12%), Positives = 94/312 (30%), Gaps = 54/312 (17%)

Query: 415 SKNIEFFQLSKNHFSGE-IPDCWMNWPRLRMLNLRNNNFT----GSLPMSIGTLSSLMSL 469
           S +I+   +     S     +      + +++ L +   T      +  ++    +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 470 NLRNNRLSG-----IIPTSFNNFTILEALDMGENEL----VGNIPTWMGERFSRLIILNL 520
           NLR+N L       ++         ++ L +    L     G + +        L  L+L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHL 120

Query: 521 RSNKFHGDFPIQLCRLA-----SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI 575
             N         LC         L+ L + Y +LS          +++       +   +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPDFKELTV 177

Query: 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGE----VPVEVTNLQGL 631
               + +        ++ +G       +  L     +     + +    +   V +   L
Sbjct: 178 SNNDINE----AGVRVLCQGLKDSPCQLEAL----KLESCGVTSDNCRDLCGIVASKASL 229

Query: 632 QSLNFSYNLFTGRIPDNIGVM----------RSIESLDFSANQLS----GYIPQSMSNLS 677
           + L    N        ++G+             + +L      ++    G + + +    
Sbjct: 230 RELALGSNKLG-----DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 678 FLNYLNLSNNNL 689
            L  L+L+ N L
Sbjct: 285 SLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 80/523 (15%), Positives = 155/523 (29%), Gaps = 128/523 (24%)

Query: 214 ELESLDLGSCQI-FGHMTNQLGRFKGLNFLDLSNT--TMDGSIPLS--LGQIANLEYLDL 268
           +++SLD+   ++        L   +    + L +   T      +S  L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 269 SKNELNG----TVSEIHFVNLTKLVTFRANGNSL----------IFKINPNWVPPFQLTG 314
             NEL       V +       K+         L            +  P       L  
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT------LQE 117

Query: 315 LGVRSCRLGPR-----FPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
           L +    LG           L  Q +L  L +    +SA       + +           
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL----------- 166

Query: 370 QMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG-ENFSKNIEFFQLSKNHF 428
                       + P    L     +SNN ++ +   ++CQG ++    +E  +L     
Sbjct: 167 -----------RAKPDFKEL----TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

Query: 429 SGE----IPDCWMNWPRLRMLNLRNNNFTGS-----LPMSIGTLSSLMSLNLRNNRLS-- 477
           + +    +     +   LR L L +N           P  +   S L +L +    ++  
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

Query: 478 --GIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
             G +         L+ L +  NEL        G+  +RL+   L               
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNEL--------GDEGARLLCETLLEPGC---------- 313

Query: 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDE--KIVEDALLVM 593
              L+ L V   + +     C ++FS++   +       I    L D   + +   L   
Sbjct: 314 --QLESLWVKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL--- 365

Query: 594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEV----TNLQGLQSLNFSYNLFTGRIPDNI 649
                      +++R + ++  + S      +         L+ L+ S N        + 
Sbjct: 366 -------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-----GDA 413

Query: 650 GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692
           G+++ +ES+                    L  L L +   + E
Sbjct: 414 GILQLVESV--------------RQPGCLLEQLVLYDIYWSEE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 9e-11
 Identities = 89/657 (13%), Positives = 188/657 (28%), Gaps = 198/657 (30%)

Query: 228 HMTNQLGRFKGLNFLDLSNTTMDGSIP-LSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286
           HM  + G  +   + D+ +   D  +       + ++    LSK E++  +     V+ T
Sbjct: 6   HMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 287 KLV--TFRANGNSLI--F-----KINPNWV---------PPFQLTGLGV----RSCRLGP 324
             +  T  +    ++  F     +IN  ++          P  +T + +    R      
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 325 RFP--------LWLQSQKKLNDL----YI--------------SSTRISAKIPRRFWNSI 358
            F          +L+ ++ L +L     +                  +S K+  +    I
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 359 FQYWFLNISGNQMYGGVPKFDSPS--MPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416
           F  W LN+  N         +SP   + ++  L    D +  + S    ++  +  +   
Sbjct: 185 F--W-LNL-KNC--------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 417 NIEFFQLSKNHFSGEIPDC-------WMNWPRLRMLNL--------RNNNFTGSLPMSIG 461
            +     SK +      +C         N       NL        R    T  L  +  
Sbjct: 233 ELRRLLKSKPY-----ENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 462 TLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521
           T  SL   ++                T  E        L+     ++  R   L      
Sbjct: 287 THISLDHHSM--------------TLTPDEVK-----SLLLK---YLDCRPQDL------ 318

Query: 522 SNKFHGDFPIQLCRLASLQI-----------------LDVAYNNLSGTIPRCINNFSAMA 564
                   P ++      ++                   V  + L+  I   +N      
Sbjct: 319 --------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---- 366

Query: 565 TTDSSDQSNDIFYASLG----DEKIVEDALLVMKGFLVEY--KSILN-LVRGIDISKNNF 617
             + ++      +  L        I    L ++   +++     ++N L +   + K   
Sbjct: 367 --EPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 618 SG---------EVPVEVTNLQGL-QSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG 667
                      E+ V++ N   L +S+   YN+            ++ +S D     L  
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNI-----------PKTFDSDDLIPPYLDQ 471

Query: 668 YIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL-QSFGGSSFADNDLCGAPLPNCTKKSVL 726
           Y        S + + +L N      +     +   F    F +  +           S+L
Sbjct: 472 YF------YSHIGH-HLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSIL 521

Query: 727 VTDDQNRIGNEED---GDETDWTLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFL 780
             +   ++   +     ++  +   ++  L F+      I   LI      KY   L
Sbjct: 522 --NTLQQLKFYKPYICDNDPKYERLVNAILDFLPK----IEENLI----CSKYTDLL 568

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS 124
            EL L   +    P   S N+  LT +DLS N           N+T L  L LS+N+   
Sbjct: 34  TELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           + P     L  L  LSL  N +   +      +L+++  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
           T L L  N+F   +P  L N   L  +DLS N+ +++     S +  L  L L  NRL+ 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 149 NISSLGLENLTSIQTLLLSGND 170
            I     + L S++ L L GND
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 57  VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYL 115
            +++   L  + LS  ++      S +N + L TL LS N  +  IP R    L SL+ L
Sbjct: 49  ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLL 107

Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            L  N  + V  G  + L+ L  L++ +N
Sbjct: 108 SLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
           L L  N FT  +P  +     L  ++L NNR+S +   SF+N T L  L +  N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 505 PTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNN 548
           P    +    L +L+L  N       G F      L++L  L +   N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFN----DLSALSHLAI-GAN 136

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 45/290 (15%), Positives = 87/290 (30%), Gaps = 40/290 (13%)

Query: 10  SNLQYLDLSG---------YNFKLHADTISWL----SGLSLLKHLYISSVNLSKASDSLL 56
            NL+ L L G                    W+    + L  LK ++   + +S      L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 57  VINSLPSLKELKLSFCK------LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG--- 107
                  L+ LKL  C       L         +   + TL + E+ F  +    L    
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSI----VTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 108 -NLTSLKYLDLSFNQFNSV----VPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSI 161
            + TSL+ L+    +F  +    +         L  + +    +   +       NL   
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLG 221
               L+ +  +  K           +    G + +  +  E+  +F      ++  LDL 
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRL---GLSYMGPN--EMPILFPFA--AQIRKLDLL 301

Query: 222 SCQIFGHMTNQL-GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSK 270
              +       L  +   L  L+  N   D  + +       L+ L + +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 40/314 (12%), Positives = 95/314 (30%), Gaps = 47/314 (14%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL--VI 58
            +P      + ++ LDL  Y      D  + +     L+ L   +V      D  L  + 
Sbjct: 284 EMPILFPFAAQIRKLDLL-YALLETEDHCTLIQKCPNLEVLETRNV----IGDRGLEVLA 338

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
                LK L++                S    + L++                L+Y+ + 
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ------------GCQELEYMAVY 386

Query: 119 FNQFNSV----VPGWLSKLNDLEFLSLQSNRLQGNIS-----SLGLENLTSIQTL-LLSG 168
            +   +     +  +L  L D   + L       ++         L     ++       
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 169 NDELGGKIPTSFGRFCK-LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG 227
              L     +  G++   ++    G+   S D   ++     C    L+ L++  C    
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DEG-LMEFSRGC--PNLQKLEMRGCCF-- 500

Query: 228 HMTNQ-----LGRFKGLNFLDLSNT--TMDGSIPLSLGQI-ANLEYLDLSKNELNGTVSE 279
             + +     + +   L +L +     +M G   + + +   N+E +   +        E
Sbjct: 501 --SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGE 558

Query: 280 IHFV-NLTKLVTFR 292
           I  + +   ++ + 
Sbjct: 559 IREMEHPAHILAYY 572

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 44/313 (14%), Positives = 83/313 (26%), Gaps = 53/313 (16%)

Query: 7   GNLSNLQYLDLSG------------------------YNFKLHADTISWLS----GLSLL 38
               +L+ L L                                     WL       + L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 39  KHLYISSVNLSKASDSLL--VINSLPSLKELKLSFCKLHHFPPL--SSANFSSLTTLDLS 94
           + L       +K S   L  +  +  SL  +K+   ++        ++AN        L+
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 95  ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG 154
           E+    +    L     L  L LS+   N  +P        +  L L    L+       
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 155 LENLTSIQTLLLSGNDELGGKIPTSFGRFCK-LKSFS-TGFTNLSQDISEILGIFSACVA 212
           ++   +++ L     + +G +      ++CK LK        +      E   +    + 
Sbjct: 314 IQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 213 N------ELESLDLGSCQI----FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIA- 261
                  ELE + +    I       +   L        + L        +PL  G  + 
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 262 -----NLEYLDLS 269
                 L      
Sbjct: 432 LIGCKKLRRFAFY 444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 27/284 (9%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
           N  +L  + +  +            + L       ++        +  + +     L  L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN--EDIGMPEKYMNLVFPRKLCRL 275

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSVV 126
            LS+   +  P L     + +  LDL     +     + +    +L+ L+      +  +
Sbjct: 276 GLSYMGPNEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334

Query: 127 PGWLSKLNDLEFLSLQS-------NRLQGNISSLGL----ENLTSIQTLLLSGNDELGGK 175
                    L+ L ++           +G +S  GL    +    ++ + +  +D +  +
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD-ITNE 393

Query: 176 IPTSFGRFCK-LKSF-------STGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG 227
              S G + K L  F           T+L  D + +  +   C      +  L    +  
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 228 HMTNQLGRF-KGLNFLDLSNTTM-DGSIPLSLGQIANLEYLDLS 269
              + +G++   + ++ L      D  +        NL+ L++ 
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPS--RLGNLTSLKYLD 116
            +    +EL L   K+     L +        +D S+NE    I        L  LK L 
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLL 70

Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLLSGN 169
           ++ N+   +  G    L DL  L L +N L   +  L  L +L S+  L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/118 (23%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 5   QLGNLSNLQYLDLSGYNFKLHADTISWL-SGLSLLKHLYISSVNLSKASDSLLVINSLPS 63
           Q  N    + LDL GY        I  L + L     +  S   + K          L  
Sbjct: 14  QYTNAVRDRELDLRGYKIP----VIENLGATLDQFDAIDFSDNEIRKLDG----FPLLRR 65

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFN 120
           LK L ++  ++             LT L L+ N          L +L SL YL +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
            L     +D S    +     +     L  LK L +++  + +  + L    +LP L EL
Sbjct: 40  TLDQFDAIDFSDNEIR----KLDGFPLLRRLKTLLVNNNRICRIGEGLD--QALPDLTEL 93

Query: 68  KLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR---LGNLTSLKYLD 116
            L+   L     L   A+  SLT L +  N    +   R   +  +  ++ LD
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 444 MLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL--V 501
           M+ L       +             L+LR  ++  I           +A+D  +NE+  +
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL 57

Query: 502 GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
              P        RL  L + +N+           L  L  L +  N+L 
Sbjct: 58  DGFP-----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 9   LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           L N++YL L   N KLH   IS L  L+ L +L ++   L    +   V + L +LKEL 
Sbjct: 62  LPNVRYLALG-GN-KLHD--ISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVVP 127
           L   +L   P       ++LT L+L+ N+ Q  +P  +   LT+L  LDLS+NQ  S+  
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE 174

Query: 128 GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           G   KL  L+ L L  N+L+ ++     + LTS+Q + L  N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 18/132 (13%)

Query: 45  SVNL-SKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP 103
             NL  K+    +  N L S+ ++  +   +     +      ++  L L  N+      
Sbjct: 23  KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVRYLALGGNKLH---- 76

Query: 104 SRLG---NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL--GL-EN 157
             +     LT+L YL L+ NQ  S+  G   KL +L+ L L  N+LQ    SL  G+ + 
Sbjct: 77  -DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ----SLPDGVFDK 131

Query: 158 LTSIQTLLLSGN 169
           LT++  L L+ N
Sbjct: 132 LTNLTYLNLAHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 44/192 (22%)

Query: 110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
                 +L        V    ++LN ++ +   ++ ++   S  G++ L +++ L L GN
Sbjct: 19  AETIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGN 73

Query: 170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
                K+        +L    T  T L                N+L+SL  G   +F  +
Sbjct: 74  -----KL-HDISALKEL----TNLTYLI------------LTGNQLQSLPNG---VFDKL 108

Query: 230 TNQLGRFKGLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286
           TN       L  L L      ++   +   L    NL YL+L+ N+L      + F  LT
Sbjct: 109 TN-------LKELVLVENQLQSLPDGVFDKL---TNLTYLNLAHNQLQSLPKGV-FDKLT 157

Query: 287 KLVTFRANGNSL 298
            L     + N L
Sbjct: 158 NLTELDLSYNQL 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 42/289 (14%), Positives = 85/289 (29%), Gaps = 33/289 (11%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWL-SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
             ++L  L++S    ++    +  L +    LK L ++            ++   P L+E
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN--RAVPLEKLATLLQRAPQLEE 239

Query: 67  LKLSFCKLHHFPPLSSA------NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           L          P + S           L  L    +     +P+     + L  L+LS+ 
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 121 QFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS 179
              S  +   L +   L+ L +        +  L       ++ L +  ++    +   +
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVA 358

Query: 180 FGRFCKLKSFSTGFTNLSQDISE--------ILGIFSACVANELESLDLGSCQIFG--HM 229
                 L S S G   L   +          ++ I        +    L   +     ++
Sbjct: 359 LTEQG-LVSVSMGCPKLESVLYFCRQMTNAALITIARNRP--NMTRFRLCIIEPKAPDYL 415

Query: 230 TNQLG---------RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269
           T +             K L  L LS    D            +E L ++
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 43/287 (14%), Positives = 88/287 (30%), Gaps = 24/287 (8%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSG-LSLLKHLYISSVNLSKASDSLLVI-NSLPS 63
           L     L+ L   GY  ++  D  S LS  LS  K L   S         L  + +    
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 64  LKELKLSFCKLHHFPPLS-SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
           L  L LS+  +  +  +        L  L + +      +         L+ L +     
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF--PS 348

Query: 123 NSVVPGWLSKLND--LEFLSLQSNRLQ------GNISSLGLE----NLTSIQTLLLSGND 170
              V      L +  L  +S+   +L+        +++  L     N  ++    L   +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408

Query: 171 ELGGKIPTSFGRFCKLKSFSTGFTNLSQ-DISEILGIFS----ACVANELESLDLGSCQI 225
                  T         +      +L +  +S +L           A ++E L +     
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD 468

Query: 226 FGHMTNQLGRF-KGLNFLDLSNTTM-DGSIPLSLGQIANLEYLDLSK 270
                + +      L  L++ +    D ++  +  ++  +  L +S 
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 64/297 (21%)

Query: 10  SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKL 69
             ++ ++L G             +  +L+   +   V     +    + +S   L+E++L
Sbjct: 66  PKVRSVELKG---------KPHFADFNLVPDGWGGYVYPWIEA----MSSSYTWLEEIRL 112

Query: 70  SFCKL--HHFPPLSSANFSSLTTLDLSE-NEFQGQ-IPSRLGNLTSLKYLDLSFNQFNSV 125
               +       ++  +F +   L LS    F    + +      +LK LDL  +  + V
Sbjct: 113 KRMVVTDDCLELIA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171

Query: 126 VPGWLSKLND----LEFLSLQSNRLQGNISSLGLENL----TSIQTLLLSGNDELGGKIP 177
              WLS   D    L  L++    L   +S   LE L     ++++L L+          
Sbjct: 172 SGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKLNR--------- 220

Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSC------QIFGHMTN 231
                              +  + ++  +        LE L  G         ++  ++ 
Sbjct: 221 -------------------AVPLEKLATLLQRAPQ--LEELGTGGYTAEVRPDVYSGLSV 259

Query: 232 QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
            L   K L  L      +   +P      + L  L+LS   +             KL
Sbjct: 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 41/268 (15%), Positives = 83/268 (30%), Gaps = 49/268 (18%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL--VINSLPSLK 65
           +  N + L LS           +  +    LK L +   ++   S   L    ++  SL 
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 66  ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
            L +S             +FS+L  L              +    +LK L L+       
Sbjct: 188 SLNISCLASEV-------SFSALERL--------------VTRCPNLKSLKLNRAVPLEK 226

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
           +   L +   LE L                               ++   +  +     +
Sbjct: 227 LATLLQRAPQLEELGTGG--------------------YTAEVRPDVYSGLSVALSGCKE 266

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH-MTNQLGRFKGLNFLDL 244
           L+  S GF +     + +  ++S C  + L +L+L    +  + +   L +   L  L +
Sbjct: 267 LRCLS-GFWDAV--PAYLPAVYSVC--SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 245 SNTTMDGSIPLSLGQIANLEYLDLSKNE 272
            +   D  + +      +L  L +  +E
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSE 349

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 4   HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPS 63
            +    +  + ++L G    +     + LS L   KHL +S+ N+ K S     ++ + +
Sbjct: 17  RKSVVATEAEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKISS----LSGMEN 71

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
           L+ L L    +     L +    +L  L +S N+    + S +  L +L+ L +S N+  
Sbjct: 72  LRILSLGRNLIKKIENLDA-VADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

Query: 124 SVVP-GWLSKLNDLEFLSLQSNRLQGNIS 151
           +      L+ L+ LE L L  N L  +  
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 17/116 (14%)

Query: 60  SLPSLKELKLSFCKLHHFPPLSS-----ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114
                ++++L        PP+       +   +   L LS N  + +I S L  + +L+ 
Sbjct: 21  VATEAEKVELHG----MIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRI 74

Query: 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLLSGN 169
           L L  N     +    +  + LE L +  N+    I+SL G+E L +++ L +S N
Sbjct: 75  LSLGRNLI-KKIENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 36/206 (17%), Positives = 59/206 (28%), Gaps = 67/206 (32%)

Query: 108 NLTSLKYLDLSFNQFNSV--VPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTL 164
             T  + ++L       +  +   LS L   + L+L +N     I  +  L  + +++ L
Sbjct: 21  VATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRIL 75

Query: 165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQ 224
            L  N                              I +I  + +    + LE L +    
Sbjct: 76  SLGRNL-----------------------------IKKIENLDAVA--DTLEELWISY-- 102

Query: 225 IFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI-HFV 283
                 NQ+    G+  L                   NL  L +S N++     EI    
Sbjct: 103 ------NQIASLSGIEKLV------------------NLRVLYMSNNKIT-NWGEIDKLA 137

Query: 284 NLTKLVTFRANGNSLIFKINPNWVPP 309
            L KL      GN L      N    
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATS 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 74  LHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFNQFNSVVPGWLSK 132
           LHH P   +     LT L +   +    +  R L  L  L+ L +  +    V P     
Sbjct: 24  LHHLPGAEN-----LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 133 LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
              L  L+L  N L+ ++S   ++ L S+Q L+LSGN
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 21  NFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPL 80
                 D++  L G   L  LYI +    +  +    +  L  L+ L +    L    P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPD 74

Query: 81  SSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN 123
           +      L+ L+LS N  +  +  +     SL+ L LS N  +
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISW--LSGLSLLKHLYISSVNLSKASDSLLVIN 59
             H L    NL  L +       H   +    L GL  L++L I    L   +      +
Sbjct: 23  SLHHLPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--H 77

Query: 60  SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ 99
             P L  L LSF  L      +     SL  L LS N   
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 440 PRLRMLNLRNNNFTGSLP-MSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
             L  L + N      L    +  L  L +L +  + L  + P +F+    L  L++  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ 540
            L       +  +   L  L L  N  H       C L  LQ
Sbjct: 91  ALESLSWKTV--QGLSLQELVLSGNPLHCS-----CALRWLQ 125

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 455 SLPMSIGTLSSLMSLNLRNNRLSGIIPT-SFNNFTILEALDMGENELVGNIPTWMGERFS 513
                +    +L  L + N +    +          L  L + ++ L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           RL  LNL  N        +  +  SLQ L ++ N L
Sbjct: 81  RLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS 124
           + L L   ++    P    +  +L  L L  N+          +LT L  LDL  NQ   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSL--GLENLTSIQTLLLSGN 169
           +      +L  L+ L +  N+L      L  G+E LT +  L L  N
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 89  TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
             L L +N+     P    +L +LK L L  NQ  ++  G    L  L  L L +N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 149 NISSL--GL-ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
               L   + + L  ++ L +  N               KL     G   L+ 
Sbjct: 102 ---VLPSAVFDRLVHLKELFMCCN---------------KLTELPRGIERLTH 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 65/191 (34%)

Query: 110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL--GL-ENLTSIQTLLL 166
           T+ + L L  NQ   + PG    L +L+ L L SN+L     +L  G+ ++LT +  L L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----ALPVGVFDSLTQLTVLDL 95

Query: 167 SGNDELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQI 225
             N               +L    +  F  L                  L+ L +     
Sbjct: 96  GTN---------------QLTVLPSAVFDRLVH----------------LKELFMC---- 120

Query: 226 FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNL 285
                N+L                   +P  + ++ +L +L L +N+L  ++    F  L
Sbjct: 121 ----CNKL-----------------TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL 158

Query: 286 TKLVTFRANGN 296
           + L      GN
Sbjct: 159 SSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 65  KELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQF 122
            EL L+  +L              L  L+L  N+  G I        + ++ L L  N+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
             +       L+ L+ L+L  N++   +     E+L S+ +L L+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFN 123
             L+L   KL   P       + LT L LS+N+ Q  +P  +   LT L  L L  N+  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
           S+  G   KL  L+ L+L +N+L+ ++     + LTS+Q + L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
           SS T L+L  N+ Q         LT L  L LS NQ  S+  G   KL  L  L L  N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 146 LQGNISSL--GL-ENLTSIQTLLLSGN 169
           LQ    SL  G+ + LT ++ L L  N
Sbjct: 88  LQ----SLPNGVFDKLTQLKELALDTN 110

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 57  VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNLTSLKYL 115
           V + L  L +L LS  ++   P       + LT L L EN+ Q  +P+ +   LT LK L
Sbjct: 47  VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105

Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            L  NQ  SV  G   +L  L+ + L +N
Sbjct: 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 39  KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98
            +L + + +L    +   V + L SL +L L   KL   P       +SLT L+LS N+ 
Sbjct: 31  TYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 99  QGQIPSRL-GNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLEN 157
           Q  +P+ +   LT LK L L+ NQ  S+  G   KL  L+ L L  N+L+ ++     + 
Sbjct: 89  Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146

Query: 158 LTSIQTLLLSGN 169
           LTS+Q + L  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
           +  T LDL  N  +         LTSL  L L  N+  S+  G  +KL  L +L+L +N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 146 LQGNISSL--GL-ENLTSIQTLLLSGN 169
           LQ    SL  G+ + LT ++ L L+ N
Sbjct: 88  LQ----SLPNGVFDKLTQLKELALNTN 110

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
             L+L  N+           L+SL  L L  N+L  +    FN  T L  L++  N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 503 NIPTWMGERFSRLIILNLRSNKF----HGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
           ++P  + ++ ++L  L L +N+      G F     +L  L+ L +  N L  ++P 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLK-SVPD 141

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 60  SLPSLKELKLSFCKLHHFPPLS-SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
           +  +++EL L  CK +       +A F +L  L L        + S L  L  LK L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG-LENLTSIQTLLLSGN 169
            N+    +     KL +L  L+L  N+L+ +IS+L  L+ L  +++L L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 4   HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPS 63
            +    + ++ L L               +    L+ L + +V L   S+    +  LP 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISVSN----LPKLPK 72

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFN 120
           LK+L+LS  ++     + +    +LT L+LS N+ +       L  L  LK LDL   
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           I        NL++L L          ++S L  L  LK L +S   +    D L     L
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLI----SVSNLPKLPKLKKLELSENRIFGGLDMLA--EKL 94

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR---LGNLTSLKYLD 116
           P+L  L LS  KL     L        L +LDL   E       R      L  L YLD
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 437 MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI-IPTSFNNFTILEALDM 495
           M+  R   L LRN              +++  L L N + +   I      F  LE L +
Sbjct: 8   MDMKRRIHLELRNRTP-----------AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL 56

Query: 496 GENEL--VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
               L  V N+P     +  +L  L L  N+  G   +   +L +L  L+++ N L 
Sbjct: 57  INVGLISVSNLP-----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
           ++   L L +N+     P     LT L  LDL  NQ   +  G   KL  L  LSL  N+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 146 LQGNISSLGLENLTSIQTLLLSGN 169
           L+ +I     +NL S+  + L  N
Sbjct: 90  LK-SIPRGAFDNLKSLTHIWLLNN 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 60  SLPSLKELKLSFCKLHHFPPLS-SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
           +   +KEL L   + +       +  F  L  L          I + L  L  LK L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG-LENLTSIQTLLLSGN 169
            N+ +  +     K  +L  L+L  N+++ ++S++  L+ L ++++L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
             S+++ L L                    L+ L   +V L+  ++    +  L  LK+L
Sbjct: 15  TPSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKLKKL 69

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFN 120
           +LS  ++     + +    +LT L+LS N+ +       L  L +LK LDL   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +         L++L            +I+ L  L+ LK L +S   +S   + L      
Sbjct: 34  LEGLTDEFEELEFLSTINVGLT----SIANLPKLNKLKKLELSDNRVSGGLEVLA--EKC 87

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSENEFQGQIPSR---LGNLTSLKYLD 116
           P+L  L LS  K+     +       +L +LDL   E       R      L  L YLD
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 462 TLSSLMSLNLRNNRLSGI-IPTSFNNFTILEALDMGENEL--VGNIPTWMGERFSRLIIL 518
           T S +  L L N+R +   +    + F  LE L      L  + N+P     + ++L  L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKL 69

Query: 519 NLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550
            L  N+  G   +   +  +L  L+++ N + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 86  SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
           +    L L+ N+     P    +L +L+ L  + N+  ++  G   KL  L  L L  N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 146 LQGNISSLGLENLTSIQTLLLSGN 169
           L+ +I     +NL S+  + L  N
Sbjct: 93  LK-SIPRGAFDNLKSLTHIYLYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 55/280 (19%), Positives = 97/280 (34%), Gaps = 39/280 (13%)

Query: 32  LSGLSLLKHLYISSVNLSKASDSLLV---INSLPSLKELKLSFCKL-----HHFPPLSSA 83
            S    +  L +S  NL   S   L+    N+  S+  L LS   L          + +A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 84  NFSSLTTLDLSENEFQGQIPSRLGNL-----TSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138
             +++T+L+LS N    +    L         ++  LDL +N F+S       +      
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 139 LSLQSNRLQGN-ISSLGLENL--------TSIQTLLLSGNDELGGKIPTSFGRF-----C 184
            S+ S  L+GN +     + L         ++ +L L GN+ L  K      +F      
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPA 196

Query: 185 KLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFK------- 237
            + S       L       L    + + N + SL+L    + G     L   K       
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 238 --GLNFLDLSNTTMDGSIPLS--LGQIANLEYLDLSKNEL 273
              L++  + N + +    L      I  +  +D +  E+
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 37/232 (15%), Positives = 65/232 (28%), Gaps = 46/232 (19%)

Query: 83  ANFSSLTTLDLSENEFQGQ----IPSRLGNLTSLKYLDLSFNQFN----SVVPGWLSKLN 134
           A FS +    L  +    +    + + L    S+K + LS N         +   ++   
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 135 DLEFLSLQSNRLQGNISSLG----------LENLTSIQTLLLSGNDELGGKIPTSFGRFC 184
           DLE          G +              L     + T+ LS N   G         F 
Sbjct: 61  DLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDF- 117

Query: 185 KLKSFST--------------GFTNLSQDISEILGIFSACVANELESLDLGSCQIFG--- 227
            L   +                   +++ + E+     A  A  L S+  G  ++     
Sbjct: 118 -LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 228 -HMTNQLGRFKGLNFLDLSNT--TMDGSIPL---SLGQIANLEYLDLSKNEL 273
                     + L+ + +       +G   L    L     L+ LDL  N  
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 49/336 (14%), Positives = 95/336 (28%), Gaps = 91/336 (27%)

Query: 6   LGNLSNLQYLDLSGYNFKLH-ADTIS-WLSGLSLLKHLYISSVNLSKASDSLL------- 56
           L    +++ + LSG       A  +S  ++    L+    S +   +  D +        
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 57  -VINSLPSLKELKLSFCKL--HHFPPLSSA--NFSSLTTLDLSENEF------------- 98
             +   P L  ++LS          PL       + L  L L  N               
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 99  QGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGW---LSKLNDLEFLSLQSNRLQ----GNI 150
           +  +  +  N   L+ +    N+  +  +  W         L  + +  N ++     ++
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 151 SSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSAC 210
              GL     ++ L L  N         +F                S  ++  L      
Sbjct: 208 LLEGLAYCQELKVLDLQDN---------TFTHLG------------SSALAIAL-----K 241

Query: 211 VANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS--LGQIAN--LEYL 266
               L  L L  C +                      +  G+  +     ++ N  L+ L
Sbjct: 242 SWPNLRELGLNDCLL----------------------SARGAAAVVDAFSKLENIGLQTL 279

Query: 267 DLSKNELNG----TVSEIHFVNLTKLVTFRANGNSL 298
            L  NE+      T+  +    +  L+    NGN  
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 50/329 (15%), Positives = 96/329 (29%), Gaps = 62/329 (18%)

Query: 215 LESLDLGSCQI----FGHMTNQLGRFKGLNFLDLSNTTM--DGSIPLS--LGQIANLEYL 266
           +E   L    I       +   L     +  + LS  T+  + +  LS  +    +LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPR- 325
           + S         EI           R    +L     P       L  + +     GP  
Sbjct: 66  EFSDIFTGRVKDEI-------PEALRLLLQAL--LKCPK------LHTVRLSDNAFGPTA 110

Query: 326 ---FPLWLQSQKKLNDLYISSTRIS--------------AKIPRRFWNSIFQYWFLNISG 368
                 +L     L  LY+ +  +               A   +       +   +    
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS--IICGR 168

Query: 369 NQMY-GGVPKFDSPSMPLVTNLGSIFDLSNNALSGS-IFHLICQGENFSKNIEFFQLSKN 426
           N++  G + ++ + +      L     +  N +    I HL+ +G  + + ++   L  N
Sbjct: 169 NRLENGSMKEW-AKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 427 HFSGE----IPDCWMNWPRLRMLNLRNNNFTG------SLPMSIGTLSSLMSLNLRNNRL 476
            F+      +     +WP LR L L +   +           S      L +L L+ N +
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 477 S-----GIIPTSFNNFTILEALDMGENEL 500
                  +          L  L++  N  
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 27/242 (11%)

Query: 44  SSVNLSKASDSLLVINSLPSLKELKLSFC-KLHHFPPLSSANFSSLTTLDLSENEF-QGQ 101
            +++L+  +    V   L S   +           P     +   +  +DLS +      
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL----EN 157
           +   L   + L+ L L   + +  +   L+K ++L  L+L         S   L     +
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSS 166

Query: 158 LTSIQTLLLSGNDELGGK-IPTSFGRFCK-LKSFSTGFTNLSQDISE--ILGIFSACVAN 213
            + +  L LS   +   K +  +     + +   +   +   +++ +  +  +   C   
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN--LSGYRKNLQKSDLSTLVRRC--P 222

Query: 214 ELESLDLGSCQIFGHMTNQ----LGRFKGLNFLDLSNTTM--DGSIPLSLGQIANLEYLD 267
            L  LDL        + N       +   L  L LS        ++ L LG+I  L+ L 
Sbjct: 223 NLVHLDLSDSV---MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQ 278

Query: 268 LS 269
           + 
Sbjct: 279 VF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 19/233 (8%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           + P   G L +   +        +        S   +  H+ +S+  +  ++    +++ 
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ-HMDLSNSVIEVST-LHGILSQ 116

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF--QGQIPSRLGNLTSLKYLDLS 118
              L+ L L   +L      + A  S+L  L+LS      +  + + L + + L  L+LS
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 119 FNQF---NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL----ENLTSIQTLLLSGNDE 171
           +        V          +  L+L  +  + N+    L        ++  L LS +  
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234

Query: 172 LGGKIPTSFGRFCKLKSFS-TGFTNLSQDISEILGIFSACVANELESLDLGSC 223
           L       F +   L+  S +   ++    +  L          L++L +   
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDII-PET--LLELGEIP--TLKTLQVFGI 282

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 9   LSNLQYLDLSGYNFKLHADTISWL--SGLSLLKHLYISSVNLSKASDS-------LLVIN 59
             NL+ L++   +  L    +  +  S L  L+ L +         D        L   +
Sbjct: 192 RPNLKSLEII--SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 60  SLPSLKELKLSFCKLHHFPP---LSSANFSSLTTLDLSENEFQG----QIPSRLGNLTSL 112
             P+LK L +   +  +      L S     L T+D+S           +   +  +  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 113 KYLDLSFNQF 122
           K++++ +N  
Sbjct: 310 KFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 25/171 (14%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 20  YNFKLHADTISWLSGLSLLKHL----YISSVNLSKASDSLLVINSLPSLKELKLSFCKL- 74
            +       ISW+  + L   L     ++++ +   ++  +     P+LK L++    L 
Sbjct: 147 GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLP 206

Query: 75  -HHFPPLSSANFSSLTTLDL---SENEFQGQIPSRL------GNLTSLKYLDLSFNQFNS 124
                 +  ++  +L  L L    E+       +            +LK+L +   +  +
Sbjct: 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266

Query: 125 VVPGWLSK---LNDLEFLSLQSNRLQGNISSL---GLENLTSIQTLLLSGN 169
           VV     +   L  LE + + +  L    + L    ++ +  ++ + +  N
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 13/196 (6%)

Query: 75  HHFPPLSSANFSSLTTLDLS-ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKL 133
             F       +  +   +       Q  +   L  +  L  L +      S+       L
Sbjct: 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL 195

Query: 134 NDLEFLSL-QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT-----SFGRFCKLK 187
             LE +S    + +  +I    L NL  +   +   +    G +       S  RF  LK
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255

Query: 188 SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQI----FGHMTNQLGRFKGLNFLD 243
                       + E+     + +  +LE++D+ +  +       + + + + K L F++
Sbjct: 256 WLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 244 LSNTTMDGSIPLSLGQ 259
           +    +   +   L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	793
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.47

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-80  Score=725.79  Aligned_cols=666  Identities=28%  Similarity=0.373  Sum_probs=430.9

Q ss_pred             CCcEEeCCCCCCCCCCC-CccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCc--cCCCCCC
Q 003813           11 NLQYLDLSGYNFKLHAD-TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPL--SSANFSS   87 (793)
Q Consensus        11 ~L~~L~Ls~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~   87 (793)
                      +++.|||+++.+..... ..+.+.++++|+.++++.+.+...++   .++.+++|++|+|++|.+++..+.  .++++++
T Consensus        51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  127 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG  127 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC---CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred             cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch---hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence            45555555554421000 01124455555555555554433222   245555555555555555543333  4555555


Q ss_pred             CCEEECcCccCCCcccccc-cCCCCCCEEeCcCCcCccCCccc---ccCCCCCCEEEccCCccccccChhhhcCCCCCcE
Q 003813           88 LTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVVPGW---LSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQT  163 (793)
Q Consensus        88 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  163 (793)
                      |++|++++|.+.+..|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+.++   +..+++|++
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~  204 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF  204 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence            5555555555554444443 55555555555555555554444   4555555555555555554333   245555555


Q ss_pred             EEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEe
Q 003813          164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLD  243 (793)
Q Consensus       164 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  243 (793)
                      |++++|. +.+.+|. ++++++|++|++++|.+++.+|..+..+     ++|++|++++|++.+..|..  .+++|++|+
T Consensus       205 L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          205 LDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC-----TELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             EECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTC-----SSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             EECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcC-----CCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            5555555 4444444 5555555555555555555555555554     55555555555555554443  455555555


Q ss_pred             CcCCcCCCCcchhhcCC-CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCC-CCCcccccEEEccCcc
Q 003813          244 LSNTTMDGSIPLSLGQI-ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPN-WVPPFQLTGLGVRSCR  321 (793)
Q Consensus       244 L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~~~  321 (793)
                      +++|.+++.+|..+... ++|++|++++|.+++.+|. .+.++++|++|++++|.+.+.++.. +..+++|++|++++|.
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            55555555555555443 5555555555555554444 4555555555555555555544443 4555555555555555


Q ss_pred             CCCCCCcccccCC-CCCeEEeecCccccccChhHHhc-cccccEEEeeCccccccCCC-CCCCCCCccCCCCcEEEcccC
Q 003813          322 LGPRFPLWLQSQK-KLNDLYISSTRISAKIPRRFWNS-IFQYWFLNISGNQMYGGVPK-FDSPSMPLVTNLGSIFDLSNN  398 (793)
Q Consensus       322 ~~~~~~~~l~~~~-~L~~L~l~~n~i~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~~~~~~~~~l~~l~ls~n  398 (793)
                      +.+.+|.++..++ +|++|++++|++.+.+|..+... +++|++|++++|++++.+|. +..      ...++.+++++|
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N  428 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFN  428 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSS
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCC
Confidence            5555565555555 66666666666665555544321 45566666666666655552 222      455666677777


Q ss_pred             cccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccc
Q 003813          399 ALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG  478 (793)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  478 (793)
                      ++++.+|..+..    +++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus       429 ~l~~~~p~~l~~----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  504 (768)
T 3rgz_A          429 YLSGTIPSSLGS----LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG  504 (768)
T ss_dssp             EEESCCCGGGGG----CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             cccCcccHHHhc----CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence            666666654433    6778888888888887788888888888888888888887778778888888888888888887


Q ss_pred             ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccC-----------
Q 003813          479 IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYN-----------  547 (793)
Q Consensus       479 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-----------  547 (793)
                      .+|.++..+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....+..+++..+           
T Consensus       505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          505 EIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             cCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            7888888888888888888888877887776 6788888888888888888877766655554443331           


Q ss_pred             -----------ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc
Q 003813          548 -----------NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN  616 (793)
Q Consensus       548 -----------~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  616 (793)
                                 .+.+..+..+..++.+...+..                    .....|..+.....++.|+.|||++|+
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--------------------~~~~~g~~~~~~~~l~~L~~LdLs~N~  643 (768)
T 3rgz_A          584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT--------------------SRVYGGHTSPTFDNNGSMMFLDMSYNM  643 (768)
T ss_dssp             CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT--------------------SCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhccccccccccc--------------------cceecccCchhhhccccccEEECcCCc
Confidence                       1122222222222222111110                    011223333444556778999999999


Q ss_pred             ceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          617 FSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       617 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ++|.+|.+++++++|++|+|++|+++|.+|+.|+++++|++|||++|+++|.+|..++.+++|++||+++|+++|+||.+
T Consensus       644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCcCCccccCC-CccCCCCCCCCCC
Q 003813          697 TQLQSFGGSSFADN-DLCGAPLPNCTKK  723 (793)
Q Consensus       697 ~~~~~~~~~~~~~n-~l~~~~~~~c~~~  723 (793)
                      +++.++...+|.|| +|||.|+..|...
T Consensus       724 ~~~~~~~~~~~~gN~~Lcg~~l~~C~~~  751 (768)
T 3rgz_A          724 GQFETFPPAKFLNNPGLCGYPLPRCDPS  751 (768)
T ss_dssp             SSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred             hhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence            99999999999999 9999998888643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-72  Score=661.77  Aligned_cols=661  Identities=27%  Similarity=0.389  Sum_probs=569.4

Q ss_pred             CCcccEEEcCCccCCCC-CchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccc--cccCCCC
Q 003813           35 LSLLKHLYISSVNLSKA-SDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPS--RLGNLTS  111 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~  111 (793)
                      -.+++.|+|+++.+.+. ...+..+.+++.|+.++++.+.+..+++ .++++++|++|||++|.+.+.+|.  .++++++
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  127 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG  127 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence            36899999999988762 1145568899999999999998876554 799999999999999999988888  9999999


Q ss_pred             CCEEeCcCCcCccCCcccc-cCCCCCCEEEccCCccccccChhh--hcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcE
Q 003813          112 LKYLDLSFNQFNSVVPGWL-SKLNDLEFLSLQSNRLQGNISSLG--LENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS  188 (793)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  188 (793)
                      |++|++++|.+.+..|..+ .++++|++|++++|.+++..+...  +.++++|++|++++|. +.+..+.  ..+++|++
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~l~~L~~  204 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVDV--SRCVNLEF  204 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCBC--TTCTTCCE
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCCc--ccCCcCCE
Confidence            9999999999998888766 899999999999999996554432  6899999999999998 7766654  88999999


Q ss_pred             EEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813          189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL  268 (793)
Q Consensus       189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  268 (793)
                      |++++|.+++.+|. ++.+     ++|++|++++|++.+..|..++.+++|++|++++|.+++.+|..  .+++|++|++
T Consensus       205 L~Ls~n~l~~~~~~-l~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L  276 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF-LGDC-----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL  276 (768)
T ss_dssp             EECCSSCCCSCCCB-CTTC-----CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred             EECcCCcCCCCCcc-cccC-----CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence            99999999998887 7766     99999999999999999999999999999999999999888765  8999999999


Q ss_pred             cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcc-cccCCCCCeEEeecCccc
Q 003813          269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLW-LQSQKKLNDLYISSTRIS  347 (793)
Q Consensus       269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~i~  347 (793)
                      ++|.+++.+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.
T Consensus       277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence            9999998888854455699999999999999999999999999999999999998888876 899999999999999999


Q ss_pred             cccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCc
Q 003813          348 AKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNH  427 (793)
Q Consensus       348 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~  427 (793)
                      +.+|..+....++|++|++++|++.+.+|.....   .....++.+++++|.+++.+|..+..    +++|+.|++++|.
T Consensus       357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~Ls~N~  429 (768)
T 3rgz_A          357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---NPKNTLQELYLQNNGFTGKIPPTLSN----CSELVSLHLSFNY  429 (768)
T ss_dssp             ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC---STTCCCCEEECCSSEEEEECCGGGGG----CTTCCEEECCSSE
T ss_pred             ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh---cccCCccEEECCCCccccccCHHHhc----CCCCCEEECcCCc
Confidence            9999988765559999999999999988843221   11457999999999999998876654    8999999999999


Q ss_pred             ccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchh
Q 003813          428 FSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW  507 (793)
Q Consensus       428 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  507 (793)
                      +++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+
T Consensus       430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc--CCccch
Q 003813          508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS--LGDEKI  585 (793)
Q Consensus       508 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~~  585 (793)
                      +. .+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|..+.....+................  ......
T Consensus       510 ~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          510 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             Hh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence            88 799999999999999999999999999999999999999999999988877665443222110000000  000000


Q ss_pred             hhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813          586 VEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL  665 (793)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  665 (793)
                      .........+........++.+..++++.|.++|.+|..++.+++|++|||++|+++|.+|..++++++|+.|+|++|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence            00000011222333344556667789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCcccccCCCC-CccCCcCCccccCCCccCC
Q 003813          666 SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGGSSFADNDLCGA  715 (793)
Q Consensus       666 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~~  715 (793)
                      +|.+|..++++++|++||+|+|+++|.||.. ..+..+....+++|.+.|.
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            9999999999999999999999999999976 4455666677888877764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-62  Score=571.64  Aligned_cols=604  Identities=21%  Similarity=0.223  Sum_probs=445.9

Q ss_pred             CCCCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc
Q 003813            2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS   81 (793)
Q Consensus         2 ip~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (793)
                      ||..+.  +++++|++++|.++.++...  |.++++|++|++++|.++++.  +..++++++|++|++++|+++.+++..
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~   92 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQLSDKT   92 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCCCGGG--GGGGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccccC--CCCcEEECCCCCCCCcCHHH--HhCCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCccChhh
Confidence            566554  67888888888776554432  677788888888888887763  234567788888888888888887777


Q ss_pred             CCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhc--CCC
Q 003813           82 SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLE--NLT  159 (793)
Q Consensus        82 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~--~l~  159 (793)
                      |+++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..++++++|++|++++|.++ .++...+.  .++
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~  171 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANS  171 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTC
T ss_pred             hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccc
Confidence            888888888888888887666677888888888888888887777777778888888888888877 34433343  457


Q ss_pred             CCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCC-
Q 003813          160 SIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG-  238 (793)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~-  238 (793)
                      +|++|++++|. +.+..|..+..+.+|+.+++..+.+.+.....+...  ...++|++|++++|.+.+..|..+..++. 
T Consensus       172 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~  248 (680)
T 1ziw_A          172 SLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWT  248 (680)
T ss_dssp             EESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred             cccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--hhhccccEEEccCCcccccChhHhhccCcC
Confidence            78888888887 777777778888888888887777664433332211  11267788888888777777777766643 


Q ss_pred             -CCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc
Q 003813          239 -LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV  317 (793)
Q Consensus       239 -L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  317 (793)
                       |++|++++|.+++..|.+|+.+++|++|++++|.+.+..+. .|.++++|+.|++++|...+....             
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~-------------  314 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISL-------------  314 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC-----------------
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhccccc-------------
Confidence             88888888877777777777777888888887777754444 677777777777776543321100             


Q ss_pred             cCccCCCCCC----cccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEE
Q 003813          318 RSCRLGPRFP----LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF  393 (793)
Q Consensus       318 ~~~~~~~~~~----~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l  393 (793)
                            ..+|    ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+....                
T Consensus       315 ------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~----------------  371 (680)
T 1ziw_A          315 ------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLT----------------  371 (680)
T ss_dssp             --------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEEC----------------
T ss_pred             ------ccccccChhhcccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcc----------------
Confidence                  0111    134556666666666666665333 3334456666666666554221110                


Q ss_pred             EcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCCCCCccEEEcc
Q 003813          394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSSLMSLNLR  472 (793)
Q Consensus       394 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  472 (793)
                         ...+.+          ...++|+.|++++|++++..|.+|..+++|++|++++|.+++.+| ..+.++++|++|+++
T Consensus       372 ---~~~f~~----------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          372 ---NETFVS----------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS  438 (680)
T ss_dssp             ---TTTTGG----------GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred             ---hhhhcc----------cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence               000000          013679999999999999999999999999999999999987666 678899999999999


Q ss_pred             CCccccccCccccCCCCCCEEeCCCCccc--ccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813          473 NNRLSGIIPTSFNNFTILEALDMGENELV--GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       473 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                      +|++.+..+..|..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence            99999998999999999999999999886  56777776 7999999999999999887788999999999999999998


Q ss_pred             cccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccC
Q 003813          551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG  630 (793)
Q Consensus       551 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  630 (793)
                      +..+..+..-                                    .......++.|+.|+|++|+++...+..|.++++
T Consensus       518 ~~~~~~~~~~------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          518 RLWKHANPGG------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             GGGSTTSTTS------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccchhhccCC------------------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            5433221100                                    0001223556799999999999555557999999


Q ss_pred             CceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc-CCCCCCeEEcccCcccccCCC-CCccCCc
Q 003813          631 LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS-NLSFLNYLNLSNNNLNGEIPS-STQLQSF  702 (793)
Q Consensus       631 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~~  702 (793)
                      |++|+|++|++++..+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.|+. .+...+.
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~  635 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI  635 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence            99999999999977777889999999999999999999998887 789999999999999999986 4444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-59  Score=547.63  Aligned_cols=565  Identities=20%  Similarity=0.199  Sum_probs=358.1

Q ss_pred             CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813           62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL  141 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  141 (793)
                      +++++|++++|.++++++..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            34555555555555555444555555555555555555444555555555555555555555443344555555555555


Q ss_pred             cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEcc
Q 003813          142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLG  221 (793)
Q Consensus       142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  221 (793)
                      ++|.+. .++...|+++++|++|++++|. +.+..+..++++++|++|+++.|.+++..+..+...   ..++|++|+++
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~L~~L~L~  179 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF---ANSSLKKLELS  179 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG---TTCEESEEECT
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc---ccccccEEECC
Confidence            555554 3332235555555555555554 444444555555555555555555554444433221   01455666666


Q ss_pred             CcccccccccccCCCCCCCEEeCcCCcCCCCcchhhc---CCCCCCEEEccCCCCccccChhhhhcCCC--CcEEECCCC
Q 003813          222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG---QIANLEYLDLSKNELNGTVSEIHFVNLTK--LVTFRANGN  296 (793)
Q Consensus       222 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~l~~n  296 (793)
                      +|.+.+..|..++.+++|+.|+++++.+.+.....+.   ..++|+.|++++|.+.+..+. .|.+++.  |++|++++|
T Consensus       180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n  258 (680)
T 1ziw_A          180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYN  258 (680)
T ss_dssp             TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTS
T ss_pred             CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCC
Confidence            6655555555555555566666555554422211111   234555666666555543333 4444433  555555555


Q ss_pred             eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccccc--------ChhHHhccccccEEEeeC
Q 003813          297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI--------PRRFWNSIFQYWFLNISG  368 (793)
Q Consensus       297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--------~~~~~~~~~~L~~L~ls~  368 (793)
                      .+.+..+..+..+++|++|++++|.+.+..|.++..+++|++|++++|...+.+        +...+..+++|       
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L-------  331 (680)
T 1ziw_A          259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL-------  331 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC-------
T ss_pred             CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC-------
Confidence            555555445555555555555555555555555566666666666655433211        11122233444       


Q ss_pred             ccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc--cCCCCccCC--CCCCE
Q 003813          369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG--EIPDCWMNW--PRLRM  444 (793)
Q Consensus       369 n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~  444 (793)
                                            +.+++++|.+.+..+..    +..+++|+.|++++|.+..  ..+..|..+  ++|+.
T Consensus       332 ----------------------~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~  385 (680)
T 1ziw_A          332 ----------------------EHLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI  385 (680)
T ss_dssp             ----------------------CEEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred             ----------------------CEEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence                                  44444444444433322    3347888888888887532  233344433  58999


Q ss_pred             EEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCc
Q 003813          445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN  523 (793)
Q Consensus       445 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n  523 (793)
                      |++++|++++..|.+|..+++|++|++++|.+++.+| ..|.++++|++|++++|++.+..+..+. .+++|+.|++++|
T Consensus       386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n  464 (680)
T 1ziw_A          386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRV  464 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTS
T ss_pred             EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccc
Confidence            9999999998888889999999999999999987665 6788899999999999998854444444 7889999999999


Q ss_pred             ccc--ccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813          524 KFH--GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK  601 (793)
Q Consensus       524 ~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (793)
                      .+.  +.+|..+..+++|+.|++++|++++..|..+.++++|                                      
T Consensus       465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L--------------------------------------  506 (680)
T 1ziw_A          465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL--------------------------------------  506 (680)
T ss_dssp             CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             cccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc--------------------------------------
Confidence            886  5678888899999999999999987666666665554                                      


Q ss_pred             hhccceeEEEcccCcceeeCc--------cccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813          602 SILNLVRGIDISKNNFSGEVP--------VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSM  673 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  673 (793)
                            +.|++++|++++..+        ..+.++++|++|+|++|+++...+..|+++++|+.|+|++|++++..+..|
T Consensus       507 ------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          507 ------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             ------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence                  889999999986422        247899999999999999995545579999999999999999998888889


Q ss_pred             cCCCCCCeEEcccCcccccCCCCC--ccCCcCCccccCC
Q 003813          674 SNLSFLNYLNLSNNNLNGEIPSST--QLQSFGGSSFADN  710 (793)
Q Consensus       674 ~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n  710 (793)
                      ..+++|+.|++++|++++..|...  .+..+....+.+|
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            999999999999999998776532  3445555556666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-57  Score=522.91  Aligned_cols=542  Identities=19%  Similarity=0.183  Sum_probs=383.1

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      +.++.++..++.+|..   +  -+++++|++++|.++++++..|.++++|++|++++|.+.+..|.+|.++++|++|+++
T Consensus        15 ~~~~c~~~~l~~iP~~---l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGT---L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TEEECTTSCCSSCCTT---S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEECCCCCcccCcCC---C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            3566666666666542   2  1356777777777777766677777777777777777776667777777777777777


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ  198 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  198 (793)
                      +|.+++..|..|+++++|++|++++|.++ .++...++++++|++|++++|. +.+..+..+..+++|+.|++++|.+++
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc
Confidence            77777766777777777777777777776 4433336777777777777776 554333333346677777777777666


Q ss_pred             cchhHHhhhccccCCCcc--EEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCcc-
Q 003813          199 DISEILGIFSACVANELE--SLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG-  275 (793)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-  275 (793)
                      ..+..++.+     ++|+  .|++++|.+.+..|..+.. .+|++|++++|.   ..+..+..+.+++...+....+.+ 
T Consensus       168 ~~~~~~~~l-----~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          168 LSKEDMSSL-----QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECHHHHHTT-----TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             cChhhhhhh-----cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccc
Confidence            666666665     6666  6777777777666655543 567777777775   344555555554444433222211 


Q ss_pred             ---ccChhhhhcCC--CCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccccc
Q 003813          276 ---TVSEIHFVNLT--KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI  350 (793)
Q Consensus       276 ---~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~  350 (793)
                         .++...+..+.  +|+.+++++|.+....+..+..+++|++|++++|.+. .+|.++..+++|++|++++|++.+..
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~  317 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC  317 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence               12222232222  3444444444444333333333444444444444333 33333444444444444444333221


Q ss_pred             ChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc
Q 003813          351 PRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG  430 (793)
Q Consensus       351 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  430 (793)
                      |.                                                          .+..+++|+.|++++|.+.+
T Consensus       318 ~~----------------------------------------------------------~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          318 QI----------------------------------------------------------SASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             GG----------------------------------------------------------CGGGCTTCSEEECCSCSSCC
T ss_pred             hh----------------------------------------------------------hhhccCcCCEEECCCCCccc
Confidence            11                                                          12236788888888888876


Q ss_pred             cCCC-CccCCCCCCEEEccCCcccccC--CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchh
Q 003813          431 EIPD-CWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW  507 (793)
Q Consensus       431 ~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  507 (793)
                      .+|. .+..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++.+..|..
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            5554 5888999999999999998765  778889999999999999999888999999999999999999998777666


Q ss_pred             HHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccccc-C--ccccccccCccccCCCCCCccccccCCccc
Q 003813          508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI-P--RCINNFSAMATTDSSDQSNDIFYASLGDEK  584 (793)
Q Consensus       508 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~  584 (793)
                      .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.. |  ..+..+                        
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l------------------------  475 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL------------------------  475 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC------------------------
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC------------------------
Confidence            4557899999999999999888889999999999999999997632 2  334443                        


Q ss_pred             hhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCc
Q 003813          585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQ  664 (793)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  664 (793)
                                          +.|+.|++++|++++.+|..|+++++|++|+|++|++++.+|+.+++++.| .|++++|+
T Consensus       476 --------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          476 --------------------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             --------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             --------------------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence                                445899999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCCCcccccCCCCCCeEEcccCcccccCCCCCccC
Q 003813          665 LSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ  700 (793)
Q Consensus       665 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~  700 (793)
                      +++.+|..+..+++|++|++++|+++|.|+..+...
T Consensus       535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  570 (606)
T 3t6q_A          535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE  570 (606)
T ss_dssp             CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred             ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence            999999999999999999999999999998654333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-56  Score=527.31  Aligned_cols=561  Identities=20%  Similarity=0.197  Sum_probs=396.1

Q ss_pred             EEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcc-cccccCCCCCCEEeCc
Q 003813           40 HLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI-PSRLGNLTSLKYLDLS  118 (793)
Q Consensus        40 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls  118 (793)
                      ..+.++++++.+|.      -.+++++|+|++|.++++.+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|+
T Consensus         8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            45666777777653      2356777777777777777777777777777777777544444 6677777777777777


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcEEEcCCCCCCCCCC-cccccCCCCCcEEEccCCcc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQTLLLSGNDELGGKI-PTSFGRFCKLKSFSTGFTNL  196 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l  196 (793)
                      +|.+.+..|..|+++++|++|++++|.+.+.++. ..++++++|++|++++|. +.+.. +..++++++|+.|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence            7777777777777777777777777777754433 236777777777777776 54443 35677777777777777777


Q ss_pred             cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCC------CCEEeCcCCcCCCCcchhhcCC---CCCCEEE
Q 003813          197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG------LNFLDLSNTTMDGSIPLSLGQI---ANLEYLD  267 (793)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~  267 (793)
                      ++..+..+..+..   ++|+.|++++|.+.+..|..++.+++      |++|++++|.+++..+..+...   ..++.+.
T Consensus       161 ~~~~~~~l~~l~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          161 FLVCEHELEPLQG---KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             CCCCSGGGHHHHH---CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             CeeCHHHcccccC---CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            7766666654422   57888888888887777776666555      8888888888877777666543   5677777


Q ss_pred             ccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCC--cccccEEEccCccCCCCCCcccccCCCCCeEEeecCc
Q 003813          268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVP--PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTR  345 (793)
Q Consensus       268 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  345 (793)
                      ++.+.......                .+.+.......+..  .++++.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus       238 l~~~~~~~~~~----------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          238 LAHHIMGAGFG----------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             CCSSCCBCSSS----------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred             ccccccccccc----------------ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence            76443321100                01111111111211  2345555555555555555566666777777777777


Q ss_pred             cccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccC
Q 003813          346 ISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK  425 (793)
Q Consensus       346 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~  425 (793)
                      +.+..|.. +..+++|++|++++|.+.+..|                                 ..+..+++|+.|++++
T Consensus       302 i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~---------------------------------~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          302 INKIADEA-FYGLDNLQVLNLSYNLLGELYS---------------------------------SNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEECTTT-TTTCSSCCEEEEESCCCSCCCS---------------------------------CSCSSCTTCCEEECCS
T ss_pred             CCCCChHH-hcCCCCCCEEECCCCCCCccCH---------------------------------HHhcCCCCCCEEECCC
Confidence            66544433 3445666666666665543333                                 1233478899999999


Q ss_pred             CcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCc
Q 003813          426 NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP  505 (793)
Q Consensus       426 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  505 (793)
                      |.+++..+..|.++++|++|++++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++.+.-.
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTT
T ss_pred             CCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCch
Confidence            999988888899999999999999999842     237899999999999984 4433   5689999999999984322


Q ss_pred             hhHHhhcccCcEEEccCccccccCCc-cccCCCCcCEEEcccCccccccC-----ccccccccCccccCCCCCCcccccc
Q 003813          506 TWMGERFSRLIILNLRSNKFHGDFPI-QLCRLASLQILDVAYNNLSGTIP-----RCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       506 ~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      ......+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+     ..+.+                    
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--------------------  478 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--------------------  478 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC--------------------
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC--------------------
Confidence            23333789999999999999965443 45668999999999999974332     22322                    


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD  659 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  659 (793)
                                              ++.|+.|||++|++++.+|..|.++++|++|+|++|++++..|..+.  ++|+.||
T Consensus       479 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~  532 (844)
T 3j0a_A          479 ------------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD  532 (844)
T ss_dssp             ------------------------BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred             ------------------------cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEE
Confidence                                    45568999999999999999999999999999999999987777766  8999999


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCCC-CCCC
Q 003813          660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLP-NCTK  722 (793)
Q Consensus       660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~-~c~~  722 (793)
                      |++|++++.+|..|.   +|+.+++++|++.|.|+..+...++    ..++ .++|.+.. .|..
T Consensus       533 Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWL----NHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             EEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCSS
T ss_pred             CCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHHHHH----HhcCcccccccccCccCC
Confidence            999999999998764   7899999999999999865433332    1223 55665443 5643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-56  Score=511.75  Aligned_cols=545  Identities=21%  Similarity=0.197  Sum_probs=386.3

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      ++++.++++++.+|..   +  .+++++|++++|+++++++..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~---~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDD---I--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TEEECTTSCCSSCCTT---S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CceEccCCCcccCCCC---C--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            4566777766666542   1  2567777777777777776667777777777777777776666677777777777777


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCccc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLS  197 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~  197 (793)
                      +|.+++..|..|+++++|++|++++|.+. .++...++++++|++|++++|. +.+ .+|..++++++|++|++++|.++
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcce
Confidence            77777766777777777777777777776 4443336777777777777776 443 55777777777777777777666


Q ss_pred             ccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCC-CCcchhhcCCCCCCEEEccCCCCccc
Q 003813          198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMD-GSIPLSLGQIANLEYLDLSKNELNGT  276 (793)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~  276 (793)
                      +..+..++.+... ...+++|++++|.+.+..+..+... +|++|++++|.++ +..|..+++++.|+.+++..+.+.+.
T Consensus       167 ~~~~~~~~~l~~L-~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          167 TITVNDLQFLREN-PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             EECTTTTHHHHHC-TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             ecChhhhhhhhcc-ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence            6555555544100 0114478888887766655555444 7778888877775 35566777777777777755444311


Q ss_pred             c-----ChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc-cCccCCCCCCcccccCCCCCeEEeecCcccccc
Q 003813          277 V-----SEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV-RSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI  350 (793)
Q Consensus       277 ~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~  350 (793)
                      .     +...+.++.                      ...++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +
T Consensus       245 ~~l~~~~~~~~~~l~----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l  300 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLC----------------------DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-L  300 (606)
T ss_dssp             CCCSCCCGGGGTTGG----------------------GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-C
T ss_pred             CcccccChHHhhhhh----------------------hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-h
Confidence            0     000111111                      012344444 33344444444 5555566666666655533 3


Q ss_pred             ChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc
Q 003813          351 PRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG  430 (793)
Q Consensus       351 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  430 (793)
                      |  .+..+++|+.|++++|.+ +.+|.+                                   .+++|+.|++++|...+
T Consensus       301 ~--~l~~~~~L~~L~l~~n~l-~~lp~~-----------------------------------~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          301 E--DVPKHFKWQSLSIIRCQL-KQFPTL-----------------------------------DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             C--CCCTTCCCSEEEEESCCC-SSCCCC-----------------------------------CCSSCCEEEEESCSSCE
T ss_pred             h--hccccccCCEEEcccccC-cccccC-----------------------------------CCCccceeeccCCcCcc
Confidence            3  222334445555554444 333321                                   26788888888886554


Q ss_pred             cCCCCccCCCCCCEEEccCCccccc--CCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhH
Q 003813          431 EIPDCWMNWPRLRMLNLRNNNFTGS--LPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM  508 (793)
Q Consensus       431 ~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  508 (793)
                      ..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...
T Consensus       343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            43  567888999999999988865  37778888999999999999885 55788889999999999999987666344


Q ss_pred             HhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc-ccCccccccccCccccCCCCCCccccccCCccchhh
Q 003813          509 GERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVE  587 (793)
Q Consensus       509 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  587 (793)
                      +..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+.++++|                        
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------  475 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL------------------------  475 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC------------------------
Confidence            4478999999999999998888899999999999999999987 467777766655                        


Q ss_pred             hhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCC
Q 003813          588 DALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG  667 (793)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  667 (793)
                                          +.|++++|++++.+|..++++++|++|++++|++++.+|..|+++++|+.|++++|+++ 
T Consensus       476 --------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-  534 (606)
T 3vq2_A          476 --------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-  534 (606)
T ss_dssp             --------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred             --------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence                                78999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcccccCCC-CCCeEEcccCcccccCCCCCccCCc
Q 003813          668 YIPQSMSNLS-FLNYLNLSNNNLNGEIPSSTQLQSF  702 (793)
Q Consensus       668 ~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~~  702 (793)
                      .+|..+..++ +|++|++++|++.|.||..+...++
T Consensus       535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          535 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence            6787799997 5999999999999999976544444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-55  Score=502.21  Aligned_cols=535  Identities=18%  Similarity=0.169  Sum_probs=369.2

Q ss_pred             cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813           13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD   92 (793)
Q Consensus        13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   92 (793)
                      +.++.++..++.+|..++     +++++|++++|.+++++  +..+.++++|++|++++|+++.+.+..|.++++|++|+
T Consensus        15 ~~~~c~~~~l~~iP~~l~-----~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   87 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV   87 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC-----TTCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ceEECCCCCcccCcCCCC-----CcCcEEEccCCccCcCC--hhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence            467777777776666532     36788888888887762  33567788888888888888877777788888888888


Q ss_pred             CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCC
Q 003813           93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL  172 (793)
Q Consensus        93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~  172 (793)
                      +++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ++...+..+++|++|++++|. +
T Consensus        88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l  165 (606)
T 3t6q_A           88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNA-I  165 (606)
T ss_dssp             CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSC-C
T ss_pred             CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCc-c
Confidence            88888877777778888888888888888877666777788888888888888773 321124557888888888877 6


Q ss_pred             CCCCcccccCCCCCc--EEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcC-
Q 003813          173 GGKIPTSFGRFCKLK--SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTM-  249 (793)
Q Consensus       173 ~~~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l-  249 (793)
                      .+..+..++.+++|+  .+++++|.+++..+..+..      .+|++|++++|..   .+..+..+.+++...+....+ 
T Consensus       166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~  236 (606)
T 3t6q_A          166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS------AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE  236 (606)
T ss_dssp             CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT------CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT
T ss_pred             cccChhhhhhhcccceeEEecCCCccCccChhHhhh------ccccccccCCchh---HHHHhhhccccchhheechhhc
Confidence            666777777777777  7788888877766655443      4678888887752   233333333333222221111 


Q ss_pred             ----CCCcchhhcCCC--CCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813          250 ----DGSIPLSLGQIA--NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG  323 (793)
Q Consensus       250 ----~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~  323 (793)
                          ....+..+..+.  +|+.|++++|.+++ ++...|.++++|++|++++|.+. ..+..+..+++|++|++++|.+.
T Consensus       237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~  314 (606)
T 3t6q_A          237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE  314 (606)
T ss_dssp             TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS
T ss_pred             cccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC
Confidence                112233333333  67788888887764 44446777888888888888776 45566777788888888888888


Q ss_pred             CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccccc
Q 003813          324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS  403 (793)
Q Consensus       324 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~  403 (793)
                      +..|..+..+++|++|++++|.+.+.++...+..                                              
T Consensus       315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----------------------------------------------  348 (606)
T 3t6q_A          315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN----------------------------------------------  348 (606)
T ss_dssp             BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT----------------------------------------------
T ss_pred             cCchhhhhccCcCCEEECCCCCcccccchhhhhc----------------------------------------------
Confidence            7778888888899999988888776555543333                                              


Q ss_pred             ccchhhcccCCCCCccEEEccCCcccccC--CCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC
Q 003813          404 IFHLICQGENFSKNIEFFQLSKNHFSGEI--PDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP  481 (793)
Q Consensus       404 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  481 (793)
                                 +++|++|++++|.+++..  +..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus       349 -----------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          349 -----------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             -----------CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             -----------cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence                       345555555555555443  4555666666666666666666666666666666666666666665544


Q ss_pred             c-cccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccccc---CCccccCCCCcCEEEcccCccccccCccc
Q 003813          482 T-SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGD---FPIQLCRLASLQILDVAYNNLSGTIPRCI  557 (793)
Q Consensus       482 ~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  557 (793)
                      . .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..+
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            3 356666666666666666654454444 466666666666666542   23456777778888888888777667666


Q ss_pred             cccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeecc
Q 003813          558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS  637 (793)
Q Consensus       558 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  637 (793)
                      .+++.|                                            +.|||++|++++.+|..+.+++.| .|+++
T Consensus       497 ~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          497 TSLKMM--------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             TTCTTC--------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             ccccCC--------------------------------------------CEEECCCCccCcCChhHhCccccc-EEECc
Confidence            655544                                            678888888888888889999999 99999


Q ss_pred             CCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813          638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       638 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                      +|++++.+|+.++.+++|+.|++++|.+++..+
T Consensus       532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999998888889999999999999999987554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-54  Score=494.47  Aligned_cols=530  Identities=17%  Similarity=0.175  Sum_probs=426.0

Q ss_pred             CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813           12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL   91 (793)
Q Consensus        12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   91 (793)
                      -++++.+++.++.+|..+     .+++++|++++|.+++++.  ..+.++++|++|++++|.++++++..|.++++|++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~-----~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-----PSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-----CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCceEccCCCcccCCCCC-----CCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            467999999998888764     2789999999999988743  357899999999999999999988899999999999


Q ss_pred             ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCC
Q 003813           92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus        92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ++++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCc
Confidence            999999998889999999999999999999999887889999999999999999985 56766 9999999999999998


Q ss_pred             CCCCCCcccccCCCCCc----EEEccCCcccccchhHHhhhccccCCCccEEEccCcccc-cccccccCCCCCCCEEeCc
Q 003813          171 ELGGKIPTSFGRFCKLK----SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF-GHMTNQLGRFKGLNFLDLS  245 (793)
Q Consensus       171 ~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~  245 (793)
                       +.+..+..++.+.+|+    .++++.|.+++..+..+..      .+|++|++++|.+. +..|..+++++.|+.+++.
T Consensus       165 -l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          165 -IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             -CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             -ceecChhhhhhhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence             8888888787776655    8999999998655444332      57999999999886 5677788899999998886


Q ss_pred             CCcCCC------CcchhhcCCC--CCCEEEc-cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEE
Q 003813          246 NTTMDG------SIPLSLGQIA--NLEYLDL-SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG  316 (793)
Q Consensus       246 ~n~l~~------~~~~~l~~l~--~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  316 (793)
                      .+.+.+      ..+..+..+.  .++.+++ ..|.+.+.++.  +..+++|+.+++++|.+..                
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~----------------  299 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY----------------  299 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC----------------
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh----------------
Confidence            554432      1222232222  4666777 66777776664  7777888888877776642                


Q ss_pred             ccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcc
Q 003813          317 VRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLS  396 (793)
Q Consensus       317 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls  396 (793)
                               +| ++..+++|++|++++|.+ +.+|. +  .+++|+.|++++|...+.++                    
T Consensus       300 ---------l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~~--------------------  345 (606)
T 3vq2_A          300 ---------LE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISFK--------------------  345 (606)
T ss_dssp             ---------CC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEECC--------------------
T ss_pred             ---------hh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccchh--------------------
Confidence                     22 344455566666666655 44552 2  45666666666664332221                    


Q ss_pred             cCcccccccchhhcccCCCCCccEEEccCCccccc--CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCC
Q 003813          397 NNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE--IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN  474 (793)
Q Consensus       397 ~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  474 (793)
                                     +..+++|+.|++++|.+++.  .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|
T Consensus       346 ---------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          346 ---------------KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS  409 (606)
T ss_dssp             ---------------CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred             ---------------hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence                           12367888888888888866  37788889999999999999885 5678888999999999999


Q ss_pred             ccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccc-cCCccccCCCCcCEEEcccCccccc
Q 003813          475 RLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG-DFPIQLCRLASLQILDVAYNNLSGT  552 (793)
Q Consensus       475 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (793)
                      ++.+..| ..+.++++|++|++++|++.+..|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus       410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI  488 (606)
T ss_dssp             EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence            9998877 6888999999999999999877777666 78999999999999987 4788899999999999999999988


Q ss_pred             cCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCc
Q 003813          553 IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ  632 (793)
Q Consensus       553 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  632 (793)
                      .|..+.++++|                                            +.|++++|++++.+|..+.++++|+
T Consensus       489 ~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          489 SWGVFDTLHRL--------------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             CTTTTTTCTTC--------------------------------------------CEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             ChhhhcccccC--------------------------------------------CEEECCCCcCCCcCHHHccCCCcCC
Confidence            88777776655                                            7899999999999999999999999


Q ss_pred             eeeccCCcccccCCccccCcC-CCCEEECCCCcCCCCCc
Q 003813          633 SLNFSYNLFTGRIPDNIGVMR-SIESLDFSANQLSGYIP  670 (793)
Q Consensus       633 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p  670 (793)
                      +|++++|+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999 7888899997 69999999999987554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-52  Score=494.45  Aligned_cols=534  Identities=19%  Similarity=0.205  Sum_probs=426.7

Q ss_pred             cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccC
Q 003813           65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQS  143 (793)
Q Consensus        65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~  143 (793)
                      +..+.++++++.+|.    -.++|++|||++|.+++..|.+|.++++|++|++++|...+. .|..|.++++|++|+|++
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            578889999999985    347999999999999988899999999999999999965544 488899999999999999


Q ss_pred             CccccccChhhhcCCCCCcEEEcCCCCCCCCCCccc--ccCCCCCcEEEccCCcccccch-hHHhhhccccCCCccEEEc
Q 003813          144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS--FGRFCKLKSFSTGFTNLSQDIS-EILGIFSACVANELESLDL  220 (793)
Q Consensus       144 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~L  220 (793)
                      |.+.+..|.. |+++++|++|++++|. +.+..+..  ++++++|++|++++|.+++..+ ..++.+     ++|++|++
T Consensus        83 N~l~~~~p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-----~~L~~L~L  155 (844)
T 3j0a_A           83 SKIYFLHPDA-FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-----NSLKSIDF  155 (844)
T ss_dssp             CCCCEECTTS-SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-----SSCCEEEE
T ss_pred             CcCcccCHhH-ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhC-----CCCCEEEC
Confidence            9999544554 9999999999999998 77766654  8999999999999999887654 466666     88999999


Q ss_pred             cCcccccccccccCCC--CCCCEEeCcCCcCCCCcchhhcCCCC------CCEEEccCCCCccccChhhhh--cCCCCcE
Q 003813          221 GSCQIFGHMTNQLGRF--KGLNFLDLSNTTMDGSIPLSLGQIAN------LEYLDLSKNELNGTVSEIHFV--NLTKLVT  290 (793)
Q Consensus       221 ~~n~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~--~l~~L~~  290 (793)
                      ++|.+.+..+..++.+  ++|+.|++++|.+.+..|..++.+++      |++|++++|.+.+.++.....  ..++++.
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            9998888888878776  88999999999988888777776665      889999888887766653222  2245666


Q ss_pred             EECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCccccc--CCCCCeEEeecCccccccChhHHhccccccEEEeeC
Q 003813          291 FRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQS--QKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISG  368 (793)
Q Consensus       291 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~  368 (793)
                      +.++.+.....               ...+.+....+..+..  .++|++|++++|.+.+..+.. +..+++|+.|++++
T Consensus       236 L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~  299 (844)
T 3j0a_A          236 LILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAY  299 (844)
T ss_dssp             EECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEES
T ss_pred             eeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCC
Confidence            66664433211               1122222222333444  378999999999998755443 45577787888777


Q ss_pred             ccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEcc
Q 003813          369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLR  448 (793)
Q Consensus       369 n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  448 (793)
                      |++.+..|.                                 .+..+++|+.|++++|.+++..|..|..+++|++|+++
T Consensus       300 n~i~~~~~~---------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          300 NKINKIADE---------------------------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCCEECTT---------------------------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CcCCCCChH---------------------------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            777654441                                 23347899999999999998889999999999999999


Q ss_pred             CCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccccc
Q 003813          449 NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGD  528 (793)
Q Consensus       449 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  528 (793)
                      +|++++..+..|..+++|++|++++|.+++..     .+++|+.|++++|+++ .+|..    ..+++.|++++|++++.
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENL  416 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSS
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccC
Confidence            99999888888999999999999999998532     3889999999999998 77754    46799999999999964


Q ss_pred             C-CccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccc
Q 003813          529 F-PIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNL  606 (793)
Q Consensus       529 ~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (793)
                      . +..+..+++|+.|++++|++++..+. .+..                                            ++.
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------------~~~  452 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------------------------------------------NPS  452 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--------------------------------------------CTT
T ss_pred             chhhhhhcCCccceeeCCCCccccccccccccc--------------------------------------------CCc
Confidence            2 23456899999999999999864432 1222                                            344


Q ss_pred             eeEEEcccCcce-----eeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCe
Q 003813          607 VRGIDISKNNFS-----GEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY  681 (793)
Q Consensus       607 L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  681 (793)
                      |+.|++++|.++     +..|..|.++++|++|+|++|++++.+|..|+++++|+.|+|++|++++..|..+.  ++|++
T Consensus       453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~  530 (844)
T 3j0a_A          453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI  530 (844)
T ss_dssp             CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred             cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence            688999999997     45567789999999999999999999999999999999999999999988887776  89999


Q ss_pred             EEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813          682 LNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP  716 (793)
Q Consensus       682 L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  716 (793)
                      ||+++|+++|.+|..  +..+....+.|| ..|..+
T Consensus       531 L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          531 LDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             EECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            999999999999875  445666667777 556544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-51  Score=466.50  Aligned_cols=518  Identities=20%  Similarity=0.196  Sum_probs=345.3

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      ++++.++.+++.+|..   +  .+++++|++++|.++++++..|.++++|++|++++|.+++..+.+|.++++|++|+++
T Consensus        10 ~~~~c~~~~l~~ip~~---l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A           10 ITYQCMELNFYKIPDN---L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TEEECCSSCCSSCCSS---S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cEEEeCCCCccccCCC---c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence            4455566556655432   1  2456777777777776666667777777777777777766556667777777777777


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCccc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLS  197 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~  197 (793)
                      +|.+++..|..|+++++|++|++++|.++ .++...++++++|++|++++|. +.+ .+|..++++++|++|++++|.++
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccc
Confidence            77776666666777777777777777766 4444336677777777777776 443 45666666666666666666666


Q ss_pred             ccchhHHhhhccccCCCc----cEEEccCcccccccccccCCCCCCCEEeCcCCcCCC-CcchhhcCCCCCCEEEccCCC
Q 003813          198 QDISEILGIFSACVANEL----ESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNE  272 (793)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~  272 (793)
                      +..+..++.+     ++|    +.+++++|.+.+..+..+... +|++|++++|.... ..+..+..++.++.+.+....
T Consensus       163 ~~~~~~~~~l-----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          163 SIYCTDLRVL-----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             EECGGGGHHH-----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             eecHHHccch-----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence            6555555555     455    677777777776666666554 67777777664332 334555566666655543322


Q ss_pred             CccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcc--cccEEEccCc-cCCCCCCcccccCCCCCeEEeecCccccc
Q 003813          273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF--QLTGLGVRSC-RLGPRFPLWLQSQKKLNDLYISSTRISAK  349 (793)
Q Consensus       273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~  349 (793)
                      +..         ...++.          .....+..+.  .++.+++..+ .+.+..|.++..+                
T Consensus       237 ~~~---------~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l----------------  281 (570)
T 2z63_A          237 FRN---------EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL----------------  281 (570)
T ss_dssp             CCC---------CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG----------------
T ss_pred             ccC---------chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCc----------------
Confidence            210         000000          0001111111  1233333333 2223333334444                


Q ss_pred             cChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccc
Q 003813          350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFS  429 (793)
Q Consensus       350 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  429 (793)
                               ++|+.|++++|.+.+ +|.                                 .+..+ +|+.|++++|.+.
T Consensus       282 ---------~~L~~L~l~~~~l~~-l~~---------------------------------~~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          282 ---------TNVSSFSLVSVTIER-VKD---------------------------------FSYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             ---------TTCSEEEEESCEECS-CCB---------------------------------CCSCC-CCSEEEEESCBCS
T ss_pred             ---------CcccEEEecCccchh-hhh---------------------------------hhccC-CccEEeeccCccc
Confidence                     444444444444331 221                                 11123 6677777777766


Q ss_pred             ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccccc--CccccCCCCCCEEeCCCCcccccCchh
Q 003813          430 GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGII--PTSFNNFTILEALDMGENELVGNIPTW  507 (793)
Q Consensus       430 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~  507 (793)
                       .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+.++++|++|++++|.+.+ +|..
T Consensus       318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~  391 (570)
T 2z63_A          318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN  391 (570)
T ss_dssp             -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE
T ss_pred             -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc
Confidence             3443  3567788888888877765554  56778888888888877654  5677788888888888888874 4444


Q ss_pred             HHhhcccCcEEEccCccccccCC-ccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchh
Q 003813          508 MGERFSRLIILNLRSNKFHGDFP-IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIV  586 (793)
Q Consensus       508 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  586 (793)
                      +. .+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+.++++|                       
T Consensus       392 ~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------------------  447 (570)
T 2z63_A          392 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-----------------------  447 (570)
T ss_dssp             EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-----------------------
T ss_pred             cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-----------------------
Confidence            43 67888888888888886655 467788888888888888887777766665554                       


Q ss_pred             hhhhhhhccchhhhhhhccceeEEEcccCcce-eeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813          587 EDALLVMKGFLVEYKSILNLVRGIDISKNNFS-GEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL  665 (793)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  665 (793)
                                           +.|++++|.++ +.+|..+..+++|++|++++|++++..|..|+.+++|+.|++++|++
T Consensus       448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence                                 78889999887 57889999999999999999999998899999999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCcccccCCCCCcc
Q 003813          666 SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL  699 (793)
Q Consensus       666 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  699 (793)
                      ++..|..|..+++|++|++++|+++|.||..+.+
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            9998899999999999999999999999986544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-49  Score=449.67  Aligned_cols=516  Identities=20%  Similarity=0.202  Sum_probs=367.4

Q ss_pred             CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813           12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL   91 (793)
Q Consensus        12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   91 (793)
                      .+.++.++.+++.+|..+     .+++++|++++|.+++++.  ..+.++++|++|++++|+++++++..|+++++|++|
T Consensus         9 ~~~~~c~~~~l~~ip~~l-----~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS-----CSSCCEEECCSCCCCEECT--TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEeCCCCccccCCCc-----cccccEEEccCCccCccCh--hHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence            356777777777666543     2478888888888877632  246788888888888888888887778888888888


Q ss_pred             ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCC
Q 003813           92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus        92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ++++|.+++..|.+|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCc
Confidence            888888887667788888888888888888887666568888888888888888874 35655 8888888888888887


Q ss_pred             CCCCCCcccccCCCCC----cEEEccCCcccccchhHHhhhccccCCCccEEEccCcccc-cccccccCCCCCCCEEeCc
Q 003813          171 ELGGKIPTSFGRFCKL----KSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF-GHMTNQLGRFKGLNFLDLS  245 (793)
Q Consensus       171 ~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~  245 (793)
                       +.+..+..++.+++|    +.++++.|.+.+..+..+..      .+|+.|++++|... ...+..+..++.++.+.+.
T Consensus       161 -l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          161 -IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE------IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             -CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             -cceecHHHccchhccchhhhhcccCCCCceecCHHHhcc------CcceeEecccccccccchhhhhcCccccceeeec
Confidence             777777777777777    78888888887766655443      36888888887432 2344556677777766654


Q ss_pred             CCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCC--CCcEEECCCC-eeeeecCCCCCCcccccEEEccCccC
Q 003813          246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT--KLVTFRANGN-SLIFKINPNWVPPFQLTGLGVRSCRL  322 (793)
Q Consensus       246 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~~~~  322 (793)
                      ...+...        .+++.  +...         .+..++  .++.++++++ .+.+..+..+..+++|+.+++++|.+
T Consensus       234 ~~~~~~~--------~~l~~--~~~~---------~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  294 (570)
T 2z63_A          234 LGEFRNE--------GNLEK--FDKS---------ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI  294 (570)
T ss_dssp             EEECCCC--------SSCEE--CCTT---------TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred             cccccCc--------hhhhh--cchh---------hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence            3322210        11110  1111         111111  1333444444 33444444455555566666666555


Q ss_pred             CCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccc
Q 003813          323 GPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG  402 (793)
Q Consensus       323 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~  402 (793)
                      . .+|.++..+ +|++|++++|.+. .+|..   .                                             
T Consensus       295 ~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~---------------------------------------------  323 (570)
T 2z63_A          295 E-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---K---------------------------------------------  323 (570)
T ss_dssp             C-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---B---------------------------------------------
T ss_pred             h-hhhhhhccC-CccEEeeccCccc-ccCcc---c---------------------------------------------
Confidence            4 466666666 7777777777765 23321   1                                             


Q ss_pred             cccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC--CCCCCCCCCccEEEccCCcccccc
Q 003813          403 SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNRLSGII  480 (793)
Q Consensus       403 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~  480 (793)
                                  +++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..+..+++|++|++++|.+.+..
T Consensus       324 ------------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          324 ------------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             ------------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             ------------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence                        34555555555555544443  45677777777777776443  556667778888888888877655


Q ss_pred             CccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-cccCccccc
Q 003813          481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTIPRCINN  559 (793)
Q Consensus       481 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~  559 (793)
                      +. +..+++|+.|++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|++. +.+|..+..
T Consensus       390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            44 7788888888888888876555444447888888888888888888888888999999999999987 567877766


Q ss_pred             cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC
Q 003813          560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN  639 (793)
Q Consensus       560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  639 (793)
                      +++|                                            +.|++++|++++..|..+.++++|++|++++|
T Consensus       469 l~~L--------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          469 LRNL--------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             CTTC--------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccCC--------------------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            6555                                            78999999999888999999999999999999


Q ss_pred             cccccCCccccCcCCCCEEECCCCcCCCCCcc
Q 003813          640 LFTGRIPDNIGVMRSIESLDFSANQLSGYIPQ  671 (793)
Q Consensus       640 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  671 (793)
                      ++++..|..|+++++|+.|++++|.+++..|.
T Consensus       505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99988888899999999999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-49  Score=449.44  Aligned_cols=489  Identities=18%  Similarity=0.216  Sum_probs=300.3

Q ss_pred             EEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcc
Q 003813           67 LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL  146 (793)
Q Consensus        67 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  146 (793)
                      .+.+++.++.+|+..+   ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|.+
T Consensus        10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            3444455555544211   3455555555555544444555555555555555555554445555555555555555555


Q ss_pred             ccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccch-hHHhhhccccCCCccEEEccCcc
Q 003813          147 QGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDIS-EILGIFSACVANELESLDLGSCQ  224 (793)
Q Consensus       147 ~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~L~~n~  224 (793)
                      + .++...|+++++|++|++++|. +.+ ..|..++++++|++|++++|.+.+.++ ..+..+     ++|++|++++|+
T Consensus        87 ~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~  159 (549)
T 2z81_A           87 S-SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-----TSLNELEIKALS  159 (549)
T ss_dssp             C-SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETT
T ss_pred             C-ccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-----cccCeeeccCCc
Confidence            5 3333335555555555555554 332 233444444444444444443222222 223322     455555555555


Q ss_pred             cccccccccCCCCCCCEEeCcCCcCCCCcchh-hcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecC
Q 003813          225 IFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS-LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN  303 (793)
Q Consensus       225 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  303 (793)
                      +.+..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++++....                        
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------  214 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS------------------------  214 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC------------------------
T ss_pred             ccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc------------------------
Confidence            555555555555555555555555542 2222 23455555555555555431100                        


Q ss_pred             CCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHH---hccccccEEEeeCccccccCCCCCC
Q 003813          304 PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW---NSIFQYWFLNISGNQMYGGVPKFDS  380 (793)
Q Consensus       304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~  380 (793)
                                            .......+++|+.|++++|.+.+..+..+.   ..+++++.+++++|.+.+... +..
T Consensus       215 ----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~  271 (549)
T 2z81_A          215 ----------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FNP  271 (549)
T ss_dssp             ----------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CCC
T ss_pred             ----------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-ccc
Confidence                                  000011234455555555555443333222   234455566666655543211 000


Q ss_pred             CCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc-----CCCCccCCCCCCEEEccCCccccc
Q 003813          381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE-----IPDCWMNWPRLRMLNLRNNNFTGS  455 (793)
Q Consensus       381 ~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~  455 (793)
                                                .....+..+.+++.|++.++.+...     .+..+...++|++|++++|+++ .
T Consensus       272 --------------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~  324 (549)
T 2z81_A          272 --------------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L  324 (549)
T ss_dssp             --------------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred             --------------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence                                      0001122356677777776655422     1112233568899999999987 5


Q ss_pred             CCCCC-CCCCCccEEEccCCccccccC---ccccCCCCCCEEeCCCCcccccCch--hHHhhcccCcEEEccCccccccC
Q 003813          456 LPMSI-GTLSSLMSLNLRNNRLSGIIP---TSFNNFTILEALDMGENELVGNIPT--WMGERFSRLIILNLRSNKFHGDF  529 (793)
Q Consensus       456 ~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~  529 (793)
                      +|..+ ..+++|++|++++|++++..|   ..+..+++|++|++++|+++ .++.  ..+..+++|++|++++|+++ .+
T Consensus       325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  402 (549)
T 2z81_A          325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM  402 (549)
T ss_dssp             CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred             CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence            66655 568899999999999987664   34778899999999999987 3442  33447899999999999999 67


Q ss_pred             CccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeE
Q 003813          530 PIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG  609 (793)
Q Consensus       530 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  609 (793)
                      |..+..+++|++|++++|+++ .+|..+                                              .+.|+.
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~  435 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEV  435 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSE
T ss_pred             ChhhcccccccEEECCCCCcc-cccchh----------------------------------------------cCCceE
Confidence            888889999999999999987 333221                                              124689


Q ss_pred             EEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcc
Q 003813          610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL  689 (793)
Q Consensus       610 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  689 (793)
                      ||+++|++++.+    ..+++|++|+|++|+++ .+|+ .+.+++|+.|+|++|++++.+|..+..+++|++|++++|++
T Consensus       436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             EECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            999999998643    57899999999999999 7887 57899999999999999999999999999999999999999


Q ss_pred             cccCCC
Q 003813          690 NGEIPS  695 (793)
Q Consensus       690 ~g~ip~  695 (793)
                      +|.||.
T Consensus       510 ~~~~~~  515 (549)
T 2z81_A          510 DCSCPR  515 (549)
T ss_dssp             CCCHHH
T ss_pred             cCCCcc
Confidence            999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2e-47  Score=442.08  Aligned_cols=548  Identities=22%  Similarity=0.202  Sum_probs=383.2

Q ss_pred             cEEEcCCccCCCCCchhHhhCCC-CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeC
Q 003813           39 KHLYISSVNLSKASDSLLVINSL-PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL  117 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  117 (793)
                      ++.+.++-+++.+|..      + +++++|+|++|+|+++++.+|.++++|++|||++|.|+++.+.+|.++++|++|+|
T Consensus        34 ~~~~c~~~~l~~vP~~------lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~L  107 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDN------LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL  107 (635)
T ss_dssp             TEEECTTSCCSSCCSS------SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCCcCccCCC------CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEc
Confidence            4567777777777652      3 47888899998888888888888888999999988888777778888888999999


Q ss_pred             cCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCccc
Q 003813          118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS  197 (793)
Q Consensus       118 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~  197 (793)
                      ++|++++..+.+|.++++|++|++++|+++ .++...|+++++|++|++++|.......|..++.+++|++|++++|.++
T Consensus       108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          108 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            988888877778888888999999888888 5666558888888888888887323456777777877777777777777


Q ss_pred             ccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC-CcchhhcCCCCCCEEEccCCCCccc
Q 003813          198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNGT  276 (793)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~  276 (793)
                      +..+..+..+.... .....++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+.....
T Consensus       187 ~~~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  264 (635)
T 4g8a_A          187 SIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  264 (635)
T ss_dssp             EECGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             ccccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence            66666555441100 1233556666665443333222 2334455555554332 1223344444444444332221100


Q ss_pred             cChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC---CCCcccccCCCCCeEEeecCccccccChh
Q 003813          277 VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP---RFPLWLQSQKKLNDLYISSTRISAKIPRR  353 (793)
Q Consensus       277 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  353 (793)
                                         ..+.......+.....+....+..+....   ..+..+.....++.+++.++.+....+. 
T Consensus       265 -------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-  324 (635)
T 4g8a_A          265 -------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-  324 (635)
T ss_dssp             -------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-
T ss_pred             -------------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-
Confidence                               00000111112222223333222222111   1222334455566666666655432221 


Q ss_pred             HHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC
Q 003813          354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP  433 (793)
Q Consensus       354 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  433 (793)
                        .....++.|++++|.+                             .+..+       ..+..|+.+++..|...... 
T Consensus       325 --~~~~~L~~L~l~~~~~-----------------------------~~~~~-------~~l~~L~~l~l~~n~~~~~~-  365 (635)
T 4g8a_A          325 --SYNFGWQHLELVNCKF-----------------------------GQFPT-------LKLKSLKRLTFTSNKGGNAF-  365 (635)
T ss_dssp             --GSCCCCSEEEEESCEE-----------------------------SSCCC-------CBCTTCCEEEEESCCSCCBC-
T ss_pred             --ccchhhhhhhcccccc-----------------------------cCcCc-------ccchhhhhcccccccCCCCc-
Confidence              1233455555555443                             32211       12467888888888776432 


Q ss_pred             CCccCCCCCCEEEccCCccc--ccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhh
Q 003813          434 DCWMNWPRLRMLNLRNNNFT--GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER  511 (793)
Q Consensus       434 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  511 (793)
                       ....+++|+.|++++|.+.  +..+..+..+.+|++++++.|.+.. .+..+..+++|+.++++.|......+...+..
T Consensus       366 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          366 -SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             -CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             -ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence             3456889999999999885  3455566678899999999998875 45668889999999999998887777666668


Q ss_pred             cccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-cccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813          512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL  590 (793)
Q Consensus       512 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (793)
                      +++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|                           
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L---------------------------  496 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------------  496 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------
Confidence            899999999999999888889999999999999999854 3566666665554                           


Q ss_pred             hhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813          591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                                       +.|||++|++++.+|..|+++++|++|+|++|++++..|..|+++++|++|||++|++++..|
T Consensus       497 -----------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          497 -----------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             -----------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             -----------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence                             889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-CCCCeEEcccCcccccCCCCCccC
Q 003813          671 QSMSNL-SFLNYLNLSNNNLNGEIPSSTQLQ  700 (793)
Q Consensus       671 ~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~  700 (793)
                      ..+..+ ++|++|++++|+++|.|...+...
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence            999998 689999999999999998554333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-47  Score=435.35  Aligned_cols=500  Identities=18%  Similarity=0.200  Sum_probs=332.0

Q ss_pred             CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCC
Q 003813            9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSL   88 (793)
Q Consensus         9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   88 (793)
                      |+.....|.+++.++.+|..+     .++|++|++++|.+++++  +..+.++++|++|++++|+++++++..|.++++|
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~-----~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCC-----CTTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCceEECCCCccccccccC-----CCCccEEECcCCccCccC--hhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence            344556788888888777654     268899999999888763  2347788999999999999998888888899999


Q ss_pred             CEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcC
Q 003813           89 TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS  167 (793)
Q Consensus        89 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  167 (793)
                      ++|++++|.+++..|.+|+++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...++++++|++|+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            9999999999877777789999999999999988863 567788899999999999886557776568888999999999


Q ss_pred             CCCCCCCCCcccccCCCCCcEEEccCCcccccchhHH-hhhccccCCCccEEEccCccccccc--c-cccCCCCCCCEEe
Q 003813          168 GNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEIL-GIFSACVANELESLDLGSCQIFGHM--T-NQLGRFKGLNFLD  243 (793)
Q Consensus       168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L~  243 (793)
                      +|. +.+..|..++.+++|+.|+++.|.+.. ++..+ ..+     ++|++|++++|++.+..  + .....+++|+.|+
T Consensus       157 ~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          157 ALS-LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADIL-----SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             ETT-CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHST-----TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             CCc-ccccChhhhhccccCceEecccCcccc-cchhhHhhc-----ccccEEEccCCccccccccccchhhhhhccccee
Confidence            888 777788888888888888887776643 33322 223     66777777777665432  1 1122344555555


Q ss_pred             CcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813          244 LSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG  323 (793)
Q Consensus       244 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~  323 (793)
                      +++|.+++..+..+..                     .+..+++|+.+++++|.+.+.....                  
T Consensus       230 l~~n~l~~~~~~~l~~---------------------~~~~~~~L~~l~l~~~~~~~~~~~~------------------  270 (549)
T 2z81_A          230 FRGSVLTDESFNELLK---------------------LLRYILELSEVEFDDCTLNGLGDFN------------------  270 (549)
T ss_dssp             EESCEEEHHHHHHHHG---------------------GGGGCTTCCEEEEESCEEECCSCCC------------------
T ss_pred             ccccccchhHHHHHHH---------------------Hhhhhcccccccccccccccccccc------------------
Confidence            5555544332222110                     1233444444444444443211000                  


Q ss_pred             CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccccc
Q 003813          324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS  403 (793)
Q Consensus       324 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~  403 (793)
                      ......+..+++++.|++.++.+.....   +.                                              .
T Consensus       271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~----------------------------------------------~  301 (549)
T 2z81_A          271 PSESDVVSELGKVETVTIRRLHIPQFYL---FY----------------------------------------------D  301 (549)
T ss_dssp             CCTTTCCCCCTTCCEEEEESCBCSCGGG---SC----------------------------------------------C
T ss_pred             ccchhhhhhhcccccccccccccchhhh---cc----------------------------------------------c
Confidence            0000112233444555555444321100   00                                              0


Q ss_pred             ccchhhcccCCCCCccEEEccCCcccccCCCCc-cCCCCCCEEEccCCcccccCC---CCCCCCCCccEEEccCCccccc
Q 003813          404 IFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW-MNWPRLRMLNLRNNNFTGSLP---MSIGTLSSLMSLNLRNNRLSGI  479 (793)
Q Consensus       404 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~  479 (793)
                      ++..    ....++|+.|++++|.++ .+|..+ .++++|++|++++|++++..|   ..++.+++|++|++++|++++.
T Consensus       302 l~~~----~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  376 (549)
T 2z81_A          302 LSTV----YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM  376 (549)
T ss_dssp             CCHH----HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred             chhh----hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence            0000    001345666666666665 344443 456777777777777765542   3356667777777777777654


Q ss_pred             cC--ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccc
Q 003813          480 IP--TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI  557 (793)
Q Consensus       480 ~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  557 (793)
                      .+  ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+  .++|++|++++|++++.+    
T Consensus       377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----  447 (549)
T 2z81_A          377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----  447 (549)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----
T ss_pred             ccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----
Confidence            32  44667777777777777776 6666554 5677777777777776 344333  257888888888877532    


Q ss_pred             cccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeecc
Q 003813          558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS  637 (793)
Q Consensus       558 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  637 (793)
                      .+                                            ++.|++|||++|+++ .+|. ...+++|++|+|+
T Consensus       448 ~~--------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls  481 (549)
T 2z81_A          448 LF--------------------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS  481 (549)
T ss_dssp             CC--------------------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred             cc--------------------------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence            12                                            233578888888888 6675 4678999999999


Q ss_pred             CCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813          638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       638 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                      +|++++.+|+.++.+++|+.|++++|.+++..|
T Consensus       482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999888889999999999999999998776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-48  Score=437.39  Aligned_cols=473  Identities=19%  Similarity=0.204  Sum_probs=248.8

Q ss_pred             cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCC
Q 003813           65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN  144 (793)
Q Consensus        65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  144 (793)
                      ++|++++|+++.+|.. +.  ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            3455666666555542 22  55666666666666555555666666666666666666555555666666666666666


Q ss_pred             ccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCc--cEEEcc
Q 003813          145 RLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL--ESLDLG  221 (793)
Q Consensus       145 ~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L--~~L~L~  221 (793)
                      +++ .+|..   .+++|++|++++|. +.+ .+|..++++++|++|++++|.+++.   .+..+     ++|  ++|+++
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L~L~~L~l~  146 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-----AHLNISKVLLV  146 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-----TTSCEEEEEEE
T ss_pred             cee-ecCcc---ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchh---hcccc-----ccceeeEEEee
Confidence            655 44442   55556666666655 333 3445555555555555444444431   12222     344  555555


Q ss_pred             Cccc--ccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeee
Q 003813          222 SCQI--FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI  299 (793)
Q Consensus       222 ~n~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  299 (793)
                      +|.+  .+..|..+..+..                       +...+++++|.+.+.++...+.++++|+.+++++|...
T Consensus       147 ~n~l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  203 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED  203 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred             ccccccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence            5555  4444444433321                       12223344444443333333333444444433333200


Q ss_pred             eecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHh--ccccccEEEeeCccccccCCC
Q 003813          300 FKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN--SIFQYWFLNISGNQMYGGVPK  377 (793)
Q Consensus       300 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~  377 (793)
                      ..       ..          .+.+.+| .+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|++.|.+|.
T Consensus       204 ~~-------~~----------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  265 (520)
T 2z7x_B          204 NK-------CS----------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF  265 (520)
T ss_dssp             TT-------TH----------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred             cc-------cc----------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence            00       00          0001111 3444555566666555554432222211  123455555555555444442


Q ss_pred             CCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC-CCccCC---CCCCEEEccCCccc
Q 003813          378 FDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP-DCWMNW---PRLRMLNLRNNNFT  453 (793)
Q Consensus       378 ~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~  453 (793)
                      ...                            ......++.|+.+++++|.+  .+| ..+..+   ++|+.|++++|.+.
T Consensus       266 ~~~----------------------------~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          266 RDF----------------------------DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             CCC----------------------------CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             chh----------------------------hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence            110                            00002245566666666655  233 222222   44666666666554


Q ss_pred             ccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc
Q 003813          454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL  533 (793)
Q Consensus       454 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~  533 (793)
                      ...  .+..+++|++|++++|++++..|..+..+++|++|++++|++++ ++                      .+|..+
T Consensus       316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~----------------------~~~~~~  370 (520)
T 2z7x_B          316 HML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LS----------------------KIAEMT  370 (520)
T ss_dssp             CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-HH----------------------HHHHHH
T ss_pred             ccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-cc----------------------cchHHH
Confidence            221  11345555566666665555555555555555555555555542 11                      223344


Q ss_pred             cCCCCcCEEEcccCccccccCcc-ccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc
Q 003813          534 CRLASLQILDVAYNNLSGTIPRC-INNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI  612 (793)
Q Consensus       534 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  612 (793)
                      ..+++|++|++++|++.+.+|.. +..++                                            .|+.|++
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~--------------------------------------------~L~~L~L  406 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDEKKGDCSWTK--------------------------------------------SLLSLNM  406 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCGGGCSCCCCT--------------------------------------------TCCEEEC
T ss_pred             hhCCCCCEEECCCCcCCcccccchhccCc--------------------------------------------cCCEEEC
Confidence            45555555555555554433322 22222                                            2355666


Q ss_pred             ccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcc-cccCCCCCCeEEcccCcccc
Q 003813          613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQ-SMSNLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       613 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g  691 (793)
                      ++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|. .+..+++|++|++++|+++|
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence            66666555555543  68999999999999 888888899999999999999995 555 48999999999999999999


Q ss_pred             cCCCCC
Q 003813          692 EIPSST  697 (793)
Q Consensus       692 ~ip~~~  697 (793)
                      .|+..+
T Consensus       483 ~c~~~~  488 (520)
T 2z7x_B          483 SCPRID  488 (520)
T ss_dssp             CHHHHH
T ss_pred             cCCchH
Confidence            988543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.8e-48  Score=440.32  Aligned_cols=452  Identities=18%  Similarity=0.280  Sum_probs=291.0

Q ss_pred             CCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCcc------------CCcccccCCCCCCEEEccCCccccccChh
Q 003813           86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS------------VVPGWLSKLNDLEFLSLQSNRLQGNISSL  153 (793)
Q Consensus        86 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~i~~~  153 (793)
                      .+++.|+|++|.+.|.+|.+++++++|++|+|++|.+..            .+|...  +..|+ +++++|.+.+.++..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            478888888888888888888888888888888886521            122211  33444 555666555444433


Q ss_pred             hhc-CCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc--cCCcccccchhHHhhhccccCCCccEEEccCcccccc--
Q 003813          154 GLE-NLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST--GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH--  228 (793)
Q Consensus       154 ~~~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l--~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--  228 (793)
                       +. .+..+..+++.... +..      .....++.+.+  ..|.+++ +|..++.+     ++|++|++++|.+++.  
T Consensus       158 -~~~~~~~l~~~~l~~~~-~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l-----~~L~~L~Ls~n~l~~~~~  223 (636)
T 4eco_A          158 -FSDLIKDCINSDPQQKS-IKK------SSRITLKDTQIGQLSNNITF-VSKAVMRL-----TKLRQFYMGNSPFVAENI  223 (636)
T ss_dssp             -SCHHHHHHHHHCTTSCC-CCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGC-----TTCCEEEEESCCCCGGGB
T ss_pred             -HHHHHHHHhhcCccccc-ccc------ccccchhhhhhccccCCCcc-CCHHHhcc-----cCCCEEECcCCccccccc
Confidence             22 11122222222211 000      00011111111  1345555 55555555     5666666666666553  


Q ss_pred             ---------------cccccC--CCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC-Ccc-ccChhhhhcC----
Q 003813          229 ---------------MTNQLG--RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE-LNG-TVSEIHFVNL----  285 (793)
Q Consensus       229 ---------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l----  285 (793)
                                     +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|. .+.++    
T Consensus       224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~  302 (636)
T 4eco_A          224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAP  302 (636)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSG
T ss_pred             cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccc
Confidence                           566666  66666666666666666666666666666666666665 655 4544 33332    


Q ss_pred             --CCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCc--ccccCCCCCeEEeecCccccccChhHHhccccc
Q 003813          286 --TKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL--WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY  361 (793)
Q Consensus       286 --~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L  361 (793)
                        ++|++|++++|.                        +. .+|.  .+..+++|++|++++|++.+.+| . +.     
T Consensus       303 ~l~~L~~L~L~~n~------------------------l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~-----  350 (636)
T 4eco_A          303 VGEKIQIIYIGYNN------------------------LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FG-----  350 (636)
T ss_dssp             GGGTCCEEECCSSC------------------------CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CE-----
T ss_pred             cCCCCCEEECCCCc------------------------CC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hC-----
Confidence              333333333332                        22 3343  44444444444444444443333 1 11     


Q ss_pred             cEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCC
Q 003813          362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPR  441 (793)
Q Consensus       362 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  441 (793)
                                                                          .+++|+.|++++|.++ .+|..+..+++
T Consensus       351 ----------------------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          351 ----------------------------------------------------SEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             ----------------------------------------------------EEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             ----------------------------------------------------CCCCCCEEECCCCccc-cccHhhhhhcc
Confidence                                                                1456777777777777 66777777777


Q ss_pred             -CCEEEccCCcccccCCCCCCCCC--CccEEEccCCccccccCcccc-------CCCCCCEEeCCCCcccccCchhHHhh
Q 003813          442 -LRMLNLRNNNFTGSLPMSIGTLS--SLMSLNLRNNRLSGIIPTSFN-------NFTILEALDMGENELVGNIPTWMGER  511 (793)
Q Consensus       442 -L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~  511 (793)
                       |++|++++|+++ .+|..+..++  +|++|++++|.+++..|..+.       .+++|++|++++|+++ .+|..++..
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~  455 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST  455 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence             888888888777 6676666544  788888888888777777776       6777888888888887 677777766


Q ss_pred             cccCcEEEccCccccccCCccccC--------CCCcCEEEcccCccccccCcccc--ccccCccccCCCCCCccccccCC
Q 003813          512 FSRLIILNLRSNKFHGDFPIQLCR--------LASLQILDVAYNNLSGTIPRCIN--NFSAMATTDSSDQSNDIFYASLG  581 (793)
Q Consensus       512 l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~  581 (793)
                      +++|++|++++|+++ .+|.....        +++|+.|++++|+++ .+|..+.  .+++                   
T Consensus       456 l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~-------------------  514 (636)
T 4eco_A          456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY-------------------  514 (636)
T ss_dssp             TCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT-------------------
T ss_pred             CCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC-------------------
Confidence            788888888888887 55543322        227888888888887 6666554  4444                   


Q ss_pred             ccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeec------cCCcccccCCccccCcCCC
Q 003813          582 DEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNF------SYNLFTGRIPDNIGVMRSI  655 (793)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L  655 (793)
                                               |+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..++++++|
T Consensus       515 -------------------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          515 -------------------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             -------------------------CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             -------------------------cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence                                     4778888888886 7888888888888888      5688899999999999999


Q ss_pred             CEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       656 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      +.|+|++|++ +.+|..+.  ++|++||+++|++.+.
T Consensus       569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            9999999999 68888766  7999999999988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.9e-48  Score=440.71  Aligned_cols=454  Identities=18%  Similarity=0.240  Sum_probs=283.1

Q ss_pred             CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCC------C------cccccccCCCCCCEEeCcCCcCccCCccc
Q 003813           62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ------G------QIPSRLGNLTSLKYLDLSFNQFNSVVPGW  129 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  129 (793)
                      .+++.|+|+++.+.+..+..++++++|++|+|++|.+.      +      .+|...  +..|+ +++++|.+.+..|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            58999999999999887789999999999999999762      2      233333  45677 888888888877766


Q ss_pred             ccC-CCCCCEEEccCCccccccChhhhcCCCCCcEEEcCC--CCCCCCCCcccccCCCCCcEEEccCCccccc-------
Q 003813          130 LSK-LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSG--NDELGGKIPTSFGRFCKLKSFSTGFTNLSQD-------  199 (793)
Q Consensus       130 ~~~-l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~--n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-------  199 (793)
                      +.. +..+..+++....+.       ......++.+.+..  |. +++ +|..++++++|++|++++|.+++.       
T Consensus       158 ~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  228 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE  228 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred             HHHHHHHHhhcCccccccc-------cccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence            552 112222222211111       01111222222221  22 444 555555555555555555555553       


Q ss_pred             ----------chhHHh--hhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCc-CCC-CcchhhcCC-----
Q 003813          200 ----------ISEILG--IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTT-MDG-SIPLSLGQI-----  260 (793)
Q Consensus       200 ----------~~~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l-----  260 (793)
                                +|..++  .+     ++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+     
T Consensus       229 ~~~~~~~~~~ip~~l~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~  303 (636)
T 4eco_A          229 NENSEYAQQYKTEDLKWDNL-----KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV  303 (636)
T ss_dssp             CTTSHHHHHHTTSCCCGGGC-----TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred             ccccchhcccCchhhhhccc-----CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence                      555555  55     677777777777777777777777788888888877 776 677777665     


Q ss_pred             -CCCCEEEccCCCCccccCh-hhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCe
Q 003813          261 -ANLEYLDLSKNELNGTVSE-IHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLND  338 (793)
Q Consensus       261 -~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  338 (793)
                       ++|++|++++|+++ .+|. ..+.++++|++|++++|.+.+.++ .+.                        .+++|++
T Consensus       304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~------------------------~l~~L~~  357 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG------------------------SEIKLAS  357 (636)
T ss_dssp             GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE------------------------EEEEESE
T ss_pred             CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC------------------------CCCCCCE
Confidence             77888888888777 5554 357777777777777777765444 333                        3344444


Q ss_pred             EEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCC-
Q 003813          339 LYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN-  417 (793)
Q Consensus       339 L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~-  417 (793)
                      |++++|++. .+|..+. .                                                         +++ 
T Consensus       358 L~L~~N~l~-~lp~~l~-~---------------------------------------------------------l~~~  378 (636)
T 4eco_A          358 LNLAYNQIT-EIPANFC-G---------------------------------------------------------FTEQ  378 (636)
T ss_dssp             EECCSSEEE-ECCTTSE-E---------------------------------------------------------ECTT
T ss_pred             EECCCCccc-cccHhhh-h---------------------------------------------------------hccc
Confidence            444444443 2332211 1                                                         233 


Q ss_pred             ccEEEccCCcccccCCCCccCCC--CCCEEEccCCcccccCCCCCC-------CCCCccEEEccCCccccccCccccCCC
Q 003813          418 IEFFQLSKNHFSGEIPDCWMNWP--RLRMLNLRNNNFTGSLPMSIG-------TLSSLMSLNLRNNRLSGIIPTSFNNFT  488 (793)
Q Consensus       418 L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~  488 (793)
                      |+.|++++|.++ .+|..+..++  +|++|++++|++++..|..+.       .+++|++|++++|++++..+..+..++
T Consensus       379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~  457 (636)
T 4eco_A          379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS  457 (636)
T ss_dssp             CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred             CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence            444444444444 3344443322  455555555555555554444       445556666666665543333444556


Q ss_pred             CCCEEeCCCCcccccCchhHHhhc-------ccCcEEEccCccccccCCcccc--CCCCcCEEEcccCccccccCccccc
Q 003813          489 ILEALDMGENELVGNIPTWMGERF-------SRLIILNLRSNKFHGDFPIQLC--RLASLQILDVAYNNLSGTIPRCINN  559 (793)
Q Consensus       489 ~L~~L~L~~N~l~~~~p~~~~~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~  559 (793)
                      +|+.|++++|+++ .+|...+...       ++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+.+
T Consensus       458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~  534 (636)
T 4eco_A          458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN  534 (636)
T ss_dssp             CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence            6666666666665 5555444222       26666666666666 5566555  66677777777777665 6666555


Q ss_pred             cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc------ccCcceeeCccccccccCCce
Q 003813          560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI------SKNNFSGEVPVEVTNLQGLQS  633 (793)
Q Consensus       560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~  633 (793)
                      +++|                                            +.|+|      ++|++.+.+|..++++++|++
T Consensus       535 l~~L--------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~  570 (636)
T 4eco_A          535 SSTL--------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ  570 (636)
T ss_dssp             CSSC--------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             CCCC--------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence            5444                                            45555      678888999999999999999


Q ss_pred             eeccCCcccccCCccccCcCCCCEEECCCCcCCCC
Q 003813          634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY  668 (793)
Q Consensus       634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  668 (793)
                      |+|++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       571 L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          571 LQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             EECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             EECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            99999999 58898876  8999999999988743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.5e-46  Score=416.53  Aligned_cols=459  Identities=22%  Similarity=0.242  Sum_probs=310.5

Q ss_pred             cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813           13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD   92 (793)
Q Consensus        13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   92 (793)
                      ++||+++|.++.+|..+   .  ++|++|++++|.+++++  +..+.++++|++|++++|+++++.+..|+++++|++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~---~--~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL---S--QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCSSCCCSC---C--TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred             ceEecCCCCcccccccc---c--ccccEEECCCCcccccC--hhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence            57888888887777653   2  78888888888888763  34577888888888888888888777888888888888


Q ss_pred             CcCccCCCcccccccCCCCCCEEeCcCCcCcc-CCcccccCCCCCCEEEccCCccccccChhhhcCCCCC--cEEEcCCC
Q 003813           93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS-VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI--QTLLLSGN  169 (793)
Q Consensus        93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L~L~~n  169 (793)
                      |++|.++ .+|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+    ..+..+++|  ++|++++|
T Consensus        76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEEC
T ss_pred             cCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecc
Confidence            8888888 45555  78888888888888877 357788888888888888887763    236666777  88888877


Q ss_pred             CCC--CCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccc-cccCCCCCCCEEeCcC
Q 003813          170 DEL--GGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFLDLSN  246 (793)
Q Consensus       170 ~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~  246 (793)
                      . +  .+..|..+..+..                            +...+++++|++.+.++ ..+..+++|+.|++++
T Consensus       149 ~-l~~~~~~~~~l~~l~~----------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  199 (520)
T 2z7x_B          149 E-TYGEKEDPEGLQDFNT----------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC  199 (520)
T ss_dssp             T-TTTSSCCTTTTTTCCE----------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred             c-cccccccccccccccc----------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence            6 5  4555555544431                            12345666666655444 3456777788888887


Q ss_pred             Cc-------CCCCcchhhcCCCCCCEEEccCCCCccccChhhh--hcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc
Q 003813          247 TT-------MDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF--VNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV  317 (793)
Q Consensus       247 n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  317 (793)
                      |.       +.+.+| .++.+++|+.|++++|.+.+.......  ...++|++|++++|.+.+                 
T Consensus       200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------  261 (520)
T 2z7x_B          200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG-----------------  261 (520)
T ss_dssp             CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES-----------------
T ss_pred             cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC-----------------
Confidence            76       554444 677778888888887777643322111  123466666666665554                 


Q ss_pred             cCccCCCCCCccc-----ccCCCCCeEEeecCccccccC-hhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCc
Q 003813          318 RSCRLGPRFPLWL-----QSQKKLNDLYISSTRISAKIP-RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS  391 (793)
Q Consensus       318 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~  391 (793)
                             .+|.++     ..+++|+.+++++|.+  .+| ..+...+.                                
T Consensus       262 -------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~--------------------------------  300 (520)
T 2z7x_B          262 -------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFS--------------------------------  300 (520)
T ss_dssp             -------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHH--------------------------------
T ss_pred             -------ccccchhhcccccCceeEeccccccce--ecchhhhhcccc--------------------------------
Confidence                   344444     6677777777777777  355 23322111                                


Q ss_pred             EEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEc
Q 003813          392 IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL  471 (793)
Q Consensus       392 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  471 (793)
                                             ..+|+.|++++|.+....  .+..+++|++|++++|++++..|..+..+++|++|++
T Consensus       301 -----------------------~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  355 (520)
T 2z7x_B          301 -----------------------NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL  355 (520)
T ss_dssp             -----------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred             -----------------------cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence                                   134555555555554321  1256778888888888888778888888888888888


Q ss_pred             cCCcccc--ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813          472 RNNRLSG--IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL  549 (793)
Q Consensus       472 ~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  549 (793)
                      ++|++++  .+|..+..+++|++|++++|++++.+|...+..+++                        |+.|++++|++
T Consensus       356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~------------------------L~~L~Ls~N~l  411 (520)
T 2z7x_B          356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS------------------------LLSLNMSSNIL  411 (520)
T ss_dssp             CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT------------------------CCEEECCSSCC
T ss_pred             cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc------------------------CCEEECcCCCC
Confidence            8888886  445667777888888888887775466543323444                        44444444444


Q ss_pred             ccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccccc
Q 003813          550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ  629 (793)
Q Consensus       550 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  629 (793)
                      ++.+|..+.                                              +.|+.||+++|+++ .+|..+..++
T Consensus       412 ~~~~~~~l~----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~  444 (520)
T 2z7x_B          412 TDTIFRCLP----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE  444 (520)
T ss_dssp             CGGGGGSCC----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             Ccchhhhhc----------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence            433332221                                              12356666666666 6777777889


Q ss_pred             CCceeeccCCcccccCCcc-ccCcCCCCEEECCCCcCCCCCc
Q 003813          630 GLQSLNFSYNLFTGRIPDN-IGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       630 ~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                      +|++|++++|+++ .+|.. +..+++|+.|++++|.+++..+
T Consensus       445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999999999999 56655 8899999999999999987654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.6e-44  Score=414.78  Aligned_cols=540  Identities=20%  Similarity=0.187  Sum_probs=387.8

Q ss_pred             CCCCCCCCCC---CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCC
Q 003813            2 IPHQLGNLSN---LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFP   78 (793)
Q Consensus         2 ip~~l~~l~~---L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   78 (793)
                      +|++...+..   -++.+-++-+++.+|..++     +++++|+|++|+|+.++.  ..|.++++|++|+|++|+|++++
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp-----~~~~~LdLs~N~i~~l~~--~~f~~l~~L~~L~Ls~N~i~~i~   92 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFYKIPDNLP-----FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIE   92 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCSSCCSSSC-----TTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCccccCCCCEEECCCCCcCccCCCCC-----cCCCEEEeeCCCCCCCCH--HHHhCCCCCCEEECCCCcCCCcC
Confidence            4544444422   2356667667777776542     479999999999998753  35789999999999999999999


Q ss_pred             CccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccc-cChhhhcC
Q 003813           79 PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN-ISSLGLEN  157 (793)
Q Consensus        79 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~  157 (793)
                      +.+|.++++|++|+|++|++++..+.+|.++++|++|++++|+++++.+..|+++++|++|++++|.+++. +|.. ++.
T Consensus        93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~  171 (635)
T 4g8a_A           93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSN  171 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGG
T ss_pred             hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hcc
Confidence            98999999999999999999977777899999999999999999998778899999999999999998743 3444 889


Q ss_pred             CCCCcEEEcCCCCCCCCCCcccccCCCCC----cEEEccCCcccccchhHHhhhccccCCCccEEEccCccccc-ccccc
Q 003813          158 LTSIQTLLLSGNDELGGKIPTSFGRFCKL----KSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG-HMTNQ  232 (793)
Q Consensus       158 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~  232 (793)
                      +++|++|++++|+ +.+..+..+..+.++    ..++++.|.+....+..+..      ..++.+++.+|.... ..+..
T Consensus       172 l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~------~~~~~l~l~~n~~~~~~~~~~  244 (635)
T 4g8a_A          172 LTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE------IRLHKLTLRNNFDSLNVMKTC  244 (635)
T ss_dssp             CTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSSHHHHHHH
T ss_pred             chhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccccc------hhhhhhhhhcccccccccchh
Confidence            9999999999998 888778777665544    46888888887654444332      457788888876543 33445


Q ss_pred             cCCCCCCCEEeCcCCc------CCCCcchhhcCCCCCCEEEccCCCCcccc--ChhhhhcCCCCcEEECCCCeeeeecCC
Q 003813          233 LGRFKGLNFLDLSNTT------MDGSIPLSLGQIANLEYLDLSKNELNGTV--SEIHFVNLTKLVTFRANGNSLIFKINP  304 (793)
Q Consensus       233 l~~l~~L~~L~L~~n~------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~  304 (793)
                      +..+..++...+..+.      +.......+..+..+...++..+......  ....+..+..++.+.+.++.+....  
T Consensus       245 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--  322 (635)
T 4g8a_A          245 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--  322 (635)
T ss_dssp             HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--
T ss_pred             hcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--
Confidence            6677777776664332      22233334445555665555444322111  1113455566666666666554322  


Q ss_pred             CCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCC
Q 003813          305 NWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP  384 (793)
Q Consensus       305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  384 (793)
                                              .+.....++.|++.+|.+....+.    .+..++.++++.|......+        
T Consensus       323 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~--------  366 (635)
T 4g8a_A          323 ------------------------DFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS--------  366 (635)
T ss_dssp             ------------------------GGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCC--------
T ss_pred             ------------------------ccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcc--------
Confidence                                    133345666666666666443222    23455666666554432111        


Q ss_pred             ccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc--cCCCCccCCCCCCEEEccCCcccccCCCCCCC
Q 003813          385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG--EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT  462 (793)
Q Consensus       385 ~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  462 (793)
                                                 ...+++|+.+++++|.+..  ..+..+..+.+|+.++++.|.+.. .+..+..
T Consensus       367 ---------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~  418 (635)
T 4g8a_A          367 ---------------------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLG  418 (635)
T ss_dssp             ---------------------------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred             ---------------------------cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccc
Confidence                                       1125677788888777643  345556677788888888888774 4556777


Q ss_pred             CCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccc-ccCCccccCCCCcC
Q 003813          463 LSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFH-GDFPIQLCRLASLQ  540 (793)
Q Consensus       463 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~  540 (793)
                      +++|+.+++++|......+ ..|..+++++.++++.|.+.+..|..+. .+++|++|++++|.+. +..|..+..+++|+
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~  497 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLT  497 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             cccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccC
Confidence            8888888888877665544 5677788888888888888755554444 6788888888888754 45677888899999


Q ss_pred             EEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceee
Q 003813          541 ILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGE  620 (793)
Q Consensus       541 ~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  620 (793)
                      +|+|++|++++..|..|.++++|                                            ++|+|++|+|++.
T Consensus       498 ~L~Ls~N~L~~l~~~~f~~l~~L--------------------------------------------~~L~Ls~N~l~~l  533 (635)
T 4g8a_A          498 FLDLSQCQLEQLSPTAFNSLSSL--------------------------------------------QVLNMSHNNFFSL  533 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECTTSCCCBC
T ss_pred             EEECCCCccCCcChHHHcCCCCC--------------------------------------------CEEECCCCcCCCC
Confidence            99999999988888887776665                                            7899999999988


Q ss_pred             CccccccccCCceeeccCCcccccCCccccCc-CCCCEEECCCCcCCC
Q 003813          621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM-RSIESLDFSANQLSG  667 (793)
Q Consensus       621 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~  667 (793)
                      .|..|.++++|++|||++|++++.+|+.+..+ ++|+.|+|++|.++.
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            88899999999999999999999999999988 689999999999985

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-45  Score=428.26  Aligned_cols=118  Identities=15%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             CcccccCCCCCcEEEccCCcccc-----------------cchhHHh--hhccccCCCccEEEccCcccccccccccCCC
Q 003813          176 IPTSFGRFCKLKSFSTGFTNLSQ-----------------DISEILG--IFSACVANELESLDLGSCQIFGHMTNQLGRF  236 (793)
Q Consensus       176 ~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l  236 (793)
                      +|..++++++|+.|++++|.+++                 .+|..++  .+     ++|++|++++|++.+.+|..++++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-----~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-----TTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-----CCCCEEECcCCCCCccChHHHhCC
Confidence            45555555555555555555555                 3666654  55     778888888888778888888888


Q ss_pred             CCCCEEeCcCCc-CCC-CcchhhcCCC-------CCCEEEccCCCCccccCh-hhhhcCCCCcEEECCCCeee
Q 003813          237 KGLNFLDLSNTT-MDG-SIPLSLGQIA-------NLEYLDLSKNELNGTVSE-IHFVNLTKLVTFRANGNSLI  299 (793)
Q Consensus       237 ~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~  299 (793)
                      ++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|. ..+.++++|+.|++++|.+.
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            888888888887 776 6777666554       8888888888887 5654 35667777777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-45  Score=415.80  Aligned_cols=477  Identities=21%  Similarity=0.210  Sum_probs=253.8

Q ss_pred             CCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEE
Q 003813           61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS  140 (793)
Q Consensus        61 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  140 (793)
                      +...+++++++|+++++|....   ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3444677777777776665222   5677777777777766666777777777777777777776666777777777777


Q ss_pred             ccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEE
Q 003813          141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD  219 (793)
Q Consensus       141 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  219 (793)
                      +++|.++ .+|..   .+++|++|++++|. +.+ ..|..++++++|++|++++|.+++.   .+..+     ++|    
T Consensus       107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L----  169 (562)
T 3a79_B          107 VSHNRLQ-NISCC---PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-----AHL----  169 (562)
T ss_dssp             CTTSCCC-EECSC---CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-----TTS----
T ss_pred             CCCCcCC-ccCcc---ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---chhhh-----hhc----
Confidence            7777776 56653   56667777777766 433 3345555555555555554444331   11111     222    


Q ss_pred             ccCcccccccccccCCCCCCCEEeCcCCcC--CCCcchhhcCCC-CCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813          220 LGSCQIFGHMTNQLGRFKGLNFLDLSNTTM--DGSIPLSLGQIA-NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN  296 (793)
Q Consensus       220 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  296 (793)
                                        +|++|++++|.+  ++..|.++..+. ..-.+++++|.+.+.++...+.++++|+.+++++|
T Consensus       170 ------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  231 (562)
T 3a79_B          170 ------------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN  231 (562)
T ss_dssp             ------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred             ------------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence                              124444444444  444444444332 11133445555544444433444444444444443


Q ss_pred             eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHh--ccccccEEEeeCcccccc
Q 003813          297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN--SIFQYWFLNISGNQMYGG  374 (793)
Q Consensus       297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~  374 (793)
                      .....                    ........+..+++|+.++++++.+.+........  ..++|++|++++|.+.|.
T Consensus       232 ~~~~~--------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  291 (562)
T 3a79_B          232 DENCQ--------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER  291 (562)
T ss_dssp             STTHH--------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC
T ss_pred             ccccc--------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc
Confidence            21000                    00001112333444555555544443221111100  112455555555554444


Q ss_pred             CCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC-CCccC---CCCCCEEEccCC
Q 003813          375 VPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP-DCWMN---WPRLRMLNLRNN  450 (793)
Q Consensus       375 ~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~Ls~n  450 (793)
                      +|....                            ......++.|+.+++..+.+  .+| ..+..   ..+|++|++++|
T Consensus       292 ip~~~~----------------------------~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          292 IDREEF----------------------------TYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             CCCCCC----------------------------CCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             ccchhh----------------------------hcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence            442110                            00001133344444444443  222 11111   134566666666


Q ss_pred             cccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC
Q 003813          451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP  530 (793)
Q Consensus       451 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  530 (793)
                      .+....  ....+++|++|++++|++++..|..+.++++|++|++++|++++ ++                      .+|
T Consensus       342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~----------------------~~~  396 (562)
T 3a79_B          342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FF----------------------KVA  396 (562)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB-TT----------------------HHH
T ss_pred             Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC-cc----------------------cch
Confidence            554211  11345555555555555555555555555555555555555542 22                      112


Q ss_pred             ccccCCCCcCEEEcccCccccccCcc-ccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeE
Q 003813          531 IQLCRLASLQILDVAYNNLSGTIPRC-INNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG  609 (793)
Q Consensus       531 ~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  609 (793)
                      ..+..+++|++|++++|++++.+|.. +..++                                            .|+.
T Consensus       397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~--------------------------------------------~L~~  432 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE--------------------------------------------SILV  432 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT--------------------------------------------TCCE
T ss_pred             hhhcCCCCCCEEECCCCcCCCccChhhhcCcc--------------------------------------------cCCE
Confidence            33445555555555555555433332 22222                                            2355


Q ss_pred             EEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccc-ccCCCCCCeEEcccCc
Q 003813          610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS-MSNLSFLNYLNLSNNN  688 (793)
Q Consensus       610 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~  688 (793)
                      |++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|++|++++|+
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence            66666666555555443  68999999999999 788888899999999999999994 5554 9999999999999999


Q ss_pred             ccccCCCCCc
Q 003813          689 LNGEIPSSTQ  698 (793)
Q Consensus       689 l~g~ip~~~~  698 (793)
                      ++|.||..+.
T Consensus       509 ~~c~c~~~~~  518 (562)
T 3a79_B          509 WDCTCPGIRY  518 (562)
T ss_dssp             BCCCHHHHHH
T ss_pred             cCCCcchHHH
Confidence            9999986544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-44  Score=419.73  Aligned_cols=402  Identities=15%  Similarity=0.206  Sum_probs=234.5

Q ss_pred             CcCccCCcccccCCCCCCEEEccCCcccc-----------------ccChhhhc--CCCCCcEEEcCCCCCCCCCCcccc
Q 003813          120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQG-----------------NISSLGLE--NLTSIQTLLLSGNDELGGKIPTSF  180 (793)
Q Consensus       120 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~i~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~l  180 (793)
                      |.+++ +|..|+++++|++|+|++|.+++                 .+|.. ++  ++++|++|++++|. +.+.+|..+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~-l~~~iP~~l  511 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCP-NMTQLPDFL  511 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCT-TCCSCCGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCC-CCccChHHH
Confidence            55655 56666666666666666666665                 25544 44  66666666666665 566666666


Q ss_pred             cCCCCCcEEEccCCc-ccc-cchhHHhhhc--cccCCCccEEEccCccccccccc--ccCCCCCCCEEeCcCCcCCCCcc
Q 003813          181 GRFCKLKSFSTGFTN-LSQ-DISEILGIFS--ACVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIP  254 (793)
Q Consensus       181 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~--~~~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~  254 (793)
                      +++++|+.|++++|. +++ .+|..++.+.  ...+++|++|++++|++. .+|.  .++.+++|++|++++|.++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            666666666666665 665 5666555441  111235555555555554 4444  4555555555555555555 444


Q ss_pred             hhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCccc-ccEEEccCccCCCCCCcccccC
Q 003813          255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ-LTGLGVRSCRLGPRFPLWLQSQ  333 (793)
Q Consensus       255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~  333 (793)
                       .++.+++|+.|++++|.+. .+|                         ..+..+++ |+.|++++|.+. .+|.++...
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp-------------------------~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~  641 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIP-------------------------EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK  641 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCC-------------------------TTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred             -hhcCCCcceEEECcCCccc-cch-------------------------HHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence             4555555555555555554 344                         33444444 555555555544 444444333


Q ss_pred             CC--CCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcc
Q 003813          334 KK--LNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG  411 (793)
Q Consensus       334 ~~--L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~  411 (793)
                      +.  |+.|++++|++.+                         .+|.+...                            ..
T Consensus       642 ~~~~L~~L~Ls~N~l~g-------------------------~ip~l~~~----------------------------l~  668 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGS-------------------------EGRNISCS----------------------------MD  668 (876)
T ss_dssp             CSSCEEEEECCSSCTTT-------------------------TSSSCSSC----------------------------TT
T ss_pred             ccCCCCEEECcCCcCCC-------------------------ccccchhh----------------------------hc
Confidence            22  4444444444433                         22211100                            00


Q ss_pred             cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCC
Q 003813          412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE  491 (793)
Q Consensus       412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  491 (793)
                      ....++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+....                +..+.++++|+
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~  731 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLT  731 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCC
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCcc
Confidence            001245666677766666322223345666777777776666 3443322111                00122334666


Q ss_pred             EEeCCCCcccccCchhHH-hhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCC
Q 003813          492 ALDMGENELVGNIPTWMG-ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD  570 (793)
Q Consensus       492 ~L~L~~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  570 (793)
                      .|+|++|+++ .+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+                      
T Consensus       732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------  787 (876)
T 4ecn_A          732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------  787 (876)
T ss_dssp             EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------
T ss_pred             EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------
Confidence            6666666666 5666554 346677777777777775 56667777777777777765                      


Q ss_pred             CCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcccc
Q 003813          571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG  650 (793)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  650 (793)
                                                              ++++|++.+.+|..+.++++|++|+|++|++ +.+|..+.
T Consensus       788 ----------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          788 ----------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             ----------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ----------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence                                                    1356677777888888888888888888888 58888766


Q ss_pred             CcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813          651 VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       651 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  691 (793)
                        ++|+.|||++|++....+..+.....+..+.+++|++..
T Consensus       827 --~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          827 --PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             --SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             --CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence              688888999888887777777666667777888887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-42  Score=394.40  Aligned_cols=469  Identities=21%  Similarity=0.228  Sum_probs=282.5

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      +...+++++++++++++|..   +  .++|++|++++|.++++++..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~---~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKD---L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTT---S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCccCCCC---C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            44457788888877776542   2  267788888888888777777778888888888888887766777778888888


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccC
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGF  193 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~  193 (793)
                      |++++|.++. +|..  .+++|++|++++|++++ .+|.. |+++++|++|++++|. +.+.....+.++ +|+.|+++.
T Consensus       105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~L-~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAK-FRQLDLLPVAHL-HLSCILLDL  178 (562)
T ss_dssp             EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSB-CCTTTTGGGTTS-CEEEEEEEE
T ss_pred             EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCc-cccCchhhhhhc-eeeEEEeec
Confidence            8888887775 4444  67788888888887773 22233 7778888888888776 544322233333 337777777


Q ss_pred             Ccc--cccchhHHhhhccccCCCccEEEccCccccccccc-ccCCCCCCCEEeCcCCcCC----CCcchhhcCCCCCCEE
Q 003813          194 TNL--SQDISEILGIFSACVANELESLDLGSCQIFGHMTN-QLGRFKGLNFLDLSNTTMD----GSIPLSLGQIANLEYL  266 (793)
Q Consensus       194 n~l--~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L  266 (793)
                      |.+  ++..|..+..+..    +.-.+++++|.+.+.++. .+..+++|+.+++++|...    ......+..+++|+.+
T Consensus       179 n~l~~~~~~~~~l~~l~~----~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L  254 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNT----TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV  254 (562)
T ss_dssp             SSCCCCSSSCCEEEECCE----EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred             ccccccccCcccccccCc----ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence            777  5555554433310    112446666665544332 3445566666666665311    0112234455555555


Q ss_pred             EccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCccc-----ccCCCCCeEEe
Q 003813          267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWL-----QSQKKLNDLYI  341 (793)
Q Consensus       267 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l  341 (793)
                      +++++.+.+........                      .....+|++|++++|.+.+.+|.++     ..++.|+.+++
T Consensus       255 ~L~~~~l~~~~~~~~~~----------------------~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQ----------------------FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             EEEEEEECHHHHHHHHH----------------------HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             EecCCcCcHHHHHHHHH----------------------hhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence            55555443211100000                      0011133344444444433444333     33333333333


Q ss_pred             ecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEE
Q 003813          342 SSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF  421 (793)
Q Consensus       342 ~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L  421 (793)
                      +.+.+  .+|.......                                                      ....+|+.|
T Consensus       313 ~~~~~--~~p~~~~~~~------------------------------------------------------~~~~~L~~L  336 (562)
T 3a79_B          313 KNQVF--LFSKEALYSV------------------------------------------------------FAEMNIKML  336 (562)
T ss_dssp             EECCC--SSCHHHHHHH------------------------------------------------------HHTCCCSEE
T ss_pred             cccee--ecChhhhhhh------------------------------------------------------hccCcceEE
Confidence            33333  2232111000                                                      002456777


Q ss_pred             EccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccc--cCccccCCCCCCEEeCCCCc
Q 003813          422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI--IPTSFNNFTILEALDMGENE  499 (793)
Q Consensus       422 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~  499 (793)
                      ++++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++.  .|..+.++++|+.|++++|+
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            77777665321  125678888888888888888888888888999999999988863  34567777888888888887


Q ss_pred             ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813          500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      +++.+|...+..+++|++|++++|++++.+|..+.  ++|                                        
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L----------------------------------------  452 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV----------------------------------------  452 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC----------------------------------------
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC----------------------------------------
Confidence            77546654333444444444444444433332221  233                                        


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcc-ccCcCCCCEE
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDN-IGVMRSIESL  658 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L  658 (793)
                                                  +.|||++|+++ .+|..+.++++|++|+|++|+++ .+|.. ++.+++|+.|
T Consensus       453 ----------------------------~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          453 ----------------------------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             ----------------------------SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE
T ss_pred             ----------------------------CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE
Confidence                                        55566666665 56666668889999999999999 56655 8899999999


Q ss_pred             ECCCCcCCCCCc
Q 003813          659 DFSANQLSGYIP  670 (793)
Q Consensus       659 ~Ls~N~l~~~~p  670 (793)
                      ++++|.+++..|
T Consensus       503 ~l~~N~~~c~c~  514 (562)
T 3a79_B          503 WLHDNPWDCTCP  514 (562)
T ss_dssp             ECCSCCBCCCHH
T ss_pred             EecCCCcCCCcc
Confidence            999999987655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-40  Score=365.18  Aligned_cols=372  Identities=16%  Similarity=0.190  Sum_probs=245.5

Q ss_pred             CCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEE
Q 003813          237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG  316 (793)
Q Consensus       237 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  316 (793)
                      ++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+.+|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45666666666666555666666666666666666665555554566666666666666666555555555555555555


Q ss_pred             ccCccCCCCCCcc--cccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEE
Q 003813          317 VRSCRLGPRFPLW--LQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFD  394 (793)
Q Consensus       317 l~~~~~~~~~~~~--l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~  394 (793)
                      +++|.+.+..+..  +..+++|++|++++|++.+..|..++..+++|++|++++|++.+..|..                
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------  173 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED----------------  173 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT----------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh----------------
Confidence            5555555433332  5666677777777777666555554444555555555555443332210                


Q ss_pred             cccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCc--------cCCCCCCEEEccCCcccccCCCCCCCC---
Q 003813          395 LSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW--------MNWPRLRMLNLRNNNFTGSLPMSIGTL---  463 (793)
Q Consensus       395 ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l---  463 (793)
                                   +.. + ....++.|++++|.+.+..+..+        ..+++|++|++++|++++..|..+...   
T Consensus       174 -------------l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  238 (455)
T 3v47_A          174 -------------LLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG  238 (455)
T ss_dssp             -------------SGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred             -------------hhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence                         000 0 01345556666665554433322        233445555555555544444333221   


Q ss_pred             CCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHH-hhcccCcEEEccCccccccCCccccCCCCcCEE
Q 003813          464 SSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMG-ERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL  542 (793)
Q Consensus       464 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  542 (793)
                      ++|+.|++++|.+.+...              ..+.+.+..+..+. -..++|++|++++|++.+..|..+..+++|++|
T Consensus       239 ~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  304 (455)
T 3v47_A          239 TKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL  304 (455)
T ss_dssp             CCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence            445555555554432210              00111111111111 024689999999999999999999999999999


Q ss_pred             EcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCc
Q 003813          543 DVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP  622 (793)
Q Consensus       543 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p  622 (793)
                      ++++|++.+..|..+.+++.|                                            +.|+|++|++++..|
T Consensus       305 ~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          305 TLAQNEINKIDDNAFWGLTHL--------------------------------------------LKLNLSQNFLGSIDS  340 (455)
T ss_dssp             ECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECCSSCCCEECG
T ss_pred             ECCCCcccccChhHhcCcccC--------------------------------------------CEEECCCCccCCcCh
Confidence            999999998878777766555                                            889999999999889


Q ss_pred             cccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCC
Q 003813          623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST  697 (793)
Q Consensus       623 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~  697 (793)
                      ..++++++|++|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|+++|.||...
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            999999999999999999999999999999999999999999998888888999999999999999999999653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.2e-40  Score=360.71  Aligned_cols=403  Identities=24%  Similarity=0.289  Sum_probs=179.9

Q ss_pred             CCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEE
Q 003813           85 FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTL  164 (793)
Q Consensus        85 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  164 (793)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++.+|..            .++++|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHEL   76 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEE
Confidence            46777777777777 46777777777777777777777777777777776665444443321            234555


Q ss_pred             EcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeC
Q 003813          165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL  244 (793)
Q Consensus       165 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  244 (793)
                      ++++|. +++ +|..   .                             ++|++|++++|.+.+ +|..   .++|++|++
T Consensus        77 ~l~~~~-l~~-lp~~---~-----------------------------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l  118 (454)
T 1jl5_A           77 ELNNLG-LSS-LPEL---P-----------------------------PHLESLVASCNSLTE-LPEL---PQSLKSLLV  118 (454)
T ss_dssp             ECTTSC-CSC-CCSC---C-----------------------------TTCSEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             EecCCc-ccc-CCCC---c-----------------------------CCCCEEEccCCcCCc-cccc---cCCCcEEEC
Confidence            665554 332 1110   1                             234444444444433 2221   134444444


Q ss_pred             cCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC
Q 003813          245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP  324 (793)
Q Consensus       245 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~  324 (793)
                      ++|.+++. |..   .++|++|++++|++++ +|  .+.++++|++|++++|++.+ ++..   ..+|++|++++|.+.+
T Consensus       119 ~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~  187 (454)
T 1jl5_A          119 DNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE  187 (454)
T ss_dssp             CSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS
T ss_pred             CCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc
Confidence            44444421 110   1344444444444442 33  24444444444444444332 1100   1133333333333332


Q ss_pred             CCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccc
Q 003813          325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI  404 (793)
Q Consensus       325 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~  404 (793)
                       +| .+..+++|++|++++|++.+ +|.                                                    
T Consensus       188 -l~-~~~~l~~L~~L~l~~N~l~~-l~~----------------------------------------------------  212 (454)
T 1jl5_A          188 -LP-ELQNLPFLTAIYADNNSLKK-LPD----------------------------------------------------  212 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSS-CCC----------------------------------------------------
T ss_pred             -Cc-cccCCCCCCEEECCCCcCCc-CCC----------------------------------------------------
Confidence             22 23344444444444444332 110                                                    


Q ss_pred             cchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccc
Q 003813          405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSF  484 (793)
Q Consensus       405 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  484 (793)
                               ..++|+.|++++|.++ .+|. +..+++|++|++++|++++ +|..   +++|++|++++|++++ +|.. 
T Consensus       213 ---------~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~-  275 (454)
T 1jl5_A          213 ---------LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL-  275 (454)
T ss_dssp             ---------CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC-
T ss_pred             ---------CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc-
Confidence                     0235666666666666 4453 6667777777777777764 3432   3567777777777765 3332 


Q ss_pred             cCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC-CCcCEEEcccCccccccCccccccccC
Q 003813          485 NNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL-ASLQILDVAYNNLSGTIPRCINNFSAM  563 (793)
Q Consensus       485 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L  563 (793)
                        +++|+.|++++|++++ +|.    ..++|++|++++|++++. +    .+ ++|+.|++++|++++ +|..+      
T Consensus       276 --~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~~------  336 (454)
T 1jl5_A          276 --PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPALP------  336 (454)
T ss_dssp             --CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCCC------
T ss_pred             --cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-ccccC------
Confidence              3667777777777664 332    124677777777777642 2    22 467777777777764 44321      


Q ss_pred             ccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccc
Q 003813          564 ATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTG  643 (793)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  643 (793)
                                                               +.|+.|++++|+++ .+|.   .+++|++|++++|++++
T Consensus       337 -----------------------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          337 -----------------------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             -----------------------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred             -----------------------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence                                                     23466777777777 4555   36777777777777776


Q ss_pred             --cCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc--cCCCC
Q 003813          644 --RIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG--EIPSS  696 (793)
Q Consensus       644 --~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~  696 (793)
                        .+|..++.+        +.|.+.|.+|..   +++|++||+++|+++|  .+|..
T Consensus       372 l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          372 FPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             CCCCCTTCCEE--------ECCC----------------------------------
T ss_pred             CCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence              566655432        345666666653   4677777888887776  66653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-38  Score=351.07  Aligned_cols=392  Identities=19%  Similarity=0.187  Sum_probs=267.5

Q ss_pred             cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccC
Q 003813           65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQS  143 (793)
Q Consensus        65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~  143 (793)
                      +.++.++++++.+|.  +.  ++|++|+|++|.+++..|.+|.++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            345556666665553  11  4566666666666655555555566666666665555422 234455555555555555


Q ss_pred             CccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCc
Q 003813          144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSC  223 (793)
Q Consensus       144 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  223 (793)
                      |.+++..|.. |+++++                                                      |++|++++|
T Consensus        89 n~l~~~~~~~-~~~l~~------------------------------------------------------L~~L~L~~n  113 (455)
T 3v47_A           89 NQFLQLETGA-FNGLAN------------------------------------------------------LEVLTLTQC  113 (455)
T ss_dssp             CTTCEECTTT-TTTCTT------------------------------------------------------CCEEECTTS
T ss_pred             CccCccChhh-ccCccc------------------------------------------------------CCEEeCCCC
Confidence            5554222222 333333                                                      333333334


Q ss_pred             cccccccc--ccCCCCCCCEEeCcCCcCCCCcchh-hcCCCCCCEEEccCCCCccccChhhhhcC--CCCcEEECCCCee
Q 003813          224 QIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLS-LGQIANLEYLDLSKNELNGTVSEIHFVNL--TKLVTFRANGNSL  298 (793)
Q Consensus       224 ~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l  298 (793)
                      ++.+..+.  .++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+. .+..+  .+|+.+++++|.+
T Consensus       114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l  192 (455)
T 3v47_A          114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITL  192 (455)
T ss_dssp             CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBC
T ss_pred             CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcc
Confidence            44333332  3777888999999999888777766 78888888888888888765444 44443  4566666666555


Q ss_pred             eeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhc--cccccEEEeeCccccccCC
Q 003813          299 IFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS--IFQYWFLNISGNQMYGGVP  376 (793)
Q Consensus       299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~~  376 (793)
                      ....+..+.                ......+..+++|++|++++|++.+..|..+...  ..+++.|++++|...+...
T Consensus       193 ~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          193 QDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             TTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             cccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence            432211100                0000112345778888888888887777766553  2678888888887654322


Q ss_pred             CCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC
Q 003813          377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL  456 (793)
Q Consensus       377 ~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  456 (793)
                      ..                   +.+.+..+..+..  ...++|+.|++++|.+++..|..|..+++|++|++++|++++..
T Consensus       257 ~~-------------------~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          257 GH-------------------TNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TC-------------------CSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ch-------------------hhhccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            11                   1111111111100  11478999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813          457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL  536 (793)
Q Consensus       457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  536 (793)
                      |..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccC
Confidence            99999999999999999999999899999999999999999999977677766 79999999999999997766678899


Q ss_pred             CCcCEEEcccCccccccC
Q 003813          537 ASLQILDVAYNNLSGTIP  554 (793)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p  554 (793)
                      ++|+.|++++|++++..|
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            999999999999998777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.8e-39  Score=349.37  Aligned_cols=187  Identities=25%  Similarity=0.327  Sum_probs=106.1

Q ss_pred             CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC-------------CEEeCcCCcCccCC
Q 003813           60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL-------------KYLDLSFNQFNSVV  126 (793)
Q Consensus        60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~  126 (793)
                      +..+|++|++++|.+..+|+ .++++++|++|++++|.+.+.+|.+++++++|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            35889999999999977665 79999999999999999999999999999876             666666666655 2


Q ss_pred             cccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhh
Q 003813          127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGI  206 (793)
Q Consensus       127 ~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  206 (793)
                      |..   .++|++|++++|.+++ +|..    .++|++|++++|.                         +++ ++.    
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~-------------------------l~~-l~~----  128 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNN-------------------------LKA-LSD----  128 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSC-------------------------CSC-CCS----
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCc-------------------------cCc-ccC----
Confidence            321   2456666666666653 4431    2455555555554                         332 110    


Q ss_pred             hccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCC
Q 003813          207 FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT  286 (793)
Q Consensus       207 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  286 (793)
                      .    .++|++|++++|++.+ +| .++.+++|++|++++|++++ +|..+   ++|++|++++|.+++ ++  .+.+++
T Consensus       129 ~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~  195 (454)
T 1jl5_A          129 L----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLP  195 (454)
T ss_dssp             C----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCT
T ss_pred             C----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCC
Confidence            0    0467777777777765 55 47777777777777777774 44332   477777777777764 44  366777


Q ss_pred             CCcEEECCCCeee
Q 003813          287 KLVTFRANGNSLI  299 (793)
Q Consensus       287 ~L~~L~l~~n~l~  299 (793)
                      +|++|++++|.+.
T Consensus       196 ~L~~L~l~~N~l~  208 (454)
T 1jl5_A          196 FLTAIYADNNSLK  208 (454)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCC
Confidence            7777777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-37  Score=338.74  Aligned_cols=407  Identities=17%  Similarity=0.201  Sum_probs=254.1

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS  111 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  111 (793)
                      +.++++|++|++++|.+++++    .+..+++|++|++++|++++++   ++.+++|++|++++|.+++. +  ++++++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             hhHcCCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            455667777777777766653    2456677777777777776653   66667777777777777653 2  666777


Q ss_pred             CCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813          112 LKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST  191 (793)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l  191 (793)
                      |++|++++|++++. |  ++.+++|++|++++|++++ ++   ++++++|++|++++|. ..+.+  .+..+++|+.|++
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNK-KITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCS-CCCCC--CCTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCC-ccccc--ccccCCcCCEEEC
Confidence            77777777777663 3  6667777777777777663 32   5667777777777775 33333  3556666666666


Q ss_pred             cCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCC
Q 003813          192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN  271 (793)
Q Consensus       192 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  271 (793)
                      ++|.+++ +|  +..+     ++|+.|++++|++++.   .++.+++|++|++++|++++ +|  ++.+++|++|++++|
T Consensus       178 s~n~l~~-l~--l~~l-----~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          178 SFNKITE-LD--VSQN-----KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CSSCCCC-CC--CTTC-----TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred             CCCccce-ec--cccC-----CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence            6666655 22  3333     6777777777777654   36777788888888888876 44  677788888888888


Q ss_pred             CCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccC
Q 003813          272 ELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIP  351 (793)
Q Consensus       272 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~  351 (793)
                      ++++. +   +..+++|+.|+++.|              +|+.+++++|...+.+|  ...+++|+.|++++|...+.+|
T Consensus       244 ~l~~~-~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          244 PLTEL-D---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CCSCC-C---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             cCCCc-C---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence            77753 2   345677777776655              23445555555544444  2345555555555555444333


Q ss_pred             hhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc
Q 003813          352 RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE  431 (793)
Q Consensus       352 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  431 (793)
                      ..    ..+                             ++.++++                 .+++|+.|++++|++++.
T Consensus       304 ~~----~~~-----------------------------L~~L~l~-----------------~~~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          304 CQ----AAG-----------------------------ITELDLS-----------------QNPKLVYLYLNNTELTEL  333 (457)
T ss_dssp             CT----TCC-----------------------------CSCCCCT-----------------TCTTCCEEECTTCCCSCC
T ss_pred             cC----CCc-----------------------------ceEechh-----------------hcccCCEEECCCCccccc
Confidence            21    112                             2222222                 246788888888888874


Q ss_pred             CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhh
Q 003813          432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER  511 (793)
Q Consensus       432 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  511 (793)
                       +  +.++++|+.|++++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+...
T Consensus       334 -~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~  397 (457)
T 3bz5_A          334 -D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ  397 (457)
T ss_dssp             -C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred             -c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence             2  7888889999999988885        24667778888888875     245567788889999888888776654


Q ss_pred             cccCcEEEccCccccccCCc--cccCCC-----CcCEEEcccCccccccCcccc
Q 003813          512 FSRLIILNLRSNKFHGDFPI--QLCRLA-----SLQILDVAYNNLSGTIPRCIN  558 (793)
Q Consensus       512 l~~L~~L~L~~n~l~~~~p~--~~~~l~-----~L~~L~Ls~N~l~~~~p~~~~  558 (793)
                      ..++....-..+........  .+.+++     -+.....++|.++|.++..+.
T Consensus       398 ~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~  451 (457)
T 3bz5_A          398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFE  451 (457)
T ss_dssp             TSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC
T ss_pred             cCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccc
Confidence            45555444443322211110  111111     223333446777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-36  Score=333.13  Aligned_cols=359  Identities=19%  Similarity=0.222  Sum_probs=232.8

Q ss_pred             hhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCC
Q 003813           57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDL  136 (793)
Q Consensus        57 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  136 (793)
                      .++.+++|++|++++|.+++++  .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            3567889999999999998875  588899999999999998864 3  88899999999999998884 3  8889999


Q ss_pred             CEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCcc
Q 003813          137 EFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELE  216 (793)
Q Consensus       137 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~  216 (793)
                      ++|++++|++++ ++   ++.+++|++|++++|+ +++.   .++.+++|+.|+++.|...+.++  +..+     ++|+
T Consensus       109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~l-----~~L~  173 (457)
T 3bz5_A          109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQ-----TQLT  173 (457)
T ss_dssp             CEEECCSSCCSC-CC---CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCCC--CTTC-----TTCC
T ss_pred             CEEECCCCcCCe-ec---CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCcccccc--cccC-----CcCC
Confidence            999999998884 54   7788899999999887 6553   26666667777666665444331  2222     5566


Q ss_pred             EEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813          217 SLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN  296 (793)
Q Consensus       217 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  296 (793)
                      +|++++|++++. |  ++.+++|++|++++|.+++.   .++.+++|++|++++|++++ +|   +..+++|+.|++++|
T Consensus       174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred             EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCC
Confidence            666666665542 2  55556666666666666543   25555666666666666553 32   445555555555555


Q ss_pred             eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCC
Q 003813          297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP  376 (793)
Q Consensus       297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  376 (793)
                      ++.+..                           ...+++|+.|++++|++                              
T Consensus       244 ~l~~~~---------------------------~~~l~~L~~L~l~~n~L------------------------------  266 (457)
T 3bz5_A          244 PLTELD---------------------------VSTLSKLTTLHCIQTDL------------------------------  266 (457)
T ss_dssp             CCSCCC---------------------------CTTCTTCCEEECTTCCC------------------------------
T ss_pred             cCCCcC---------------------------HHHCCCCCEEeccCCCC------------------------------
Confidence            443321                           12233444444333221                              


Q ss_pred             CCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC
Q 003813          377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL  456 (793)
Q Consensus       377 ~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  456 (793)
                                    +.+++++|.+.+.+|.      ..+++|+.|++++|...+.+|.   ..++|+.|++++|      
T Consensus       267 --------------~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------  317 (457)
T 3bz5_A          267 --------------LEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------  317 (457)
T ss_dssp             --------------SCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------
T ss_pred             --------------CEEECCCCccCCcccc------cccccCCEEECCCCcccceecc---CCCcceEechhhc------
Confidence                          2223333333333321      2356777777777776666553   2344555554443      


Q ss_pred             CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813          457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL  536 (793)
Q Consensus       457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  536 (793)
                             ++|++|++++|++++. +  +.++++|+.|++++|++++         ++.|..|++++|.+.|.     +.+
T Consensus       318 -------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~  373 (457)
T 3bz5_A          318 -------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQT  373 (457)
T ss_dssp             -------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEE
T ss_pred             -------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----cee
Confidence                   5777888888888764 2  7777888888888887773         34556667778887765     244


Q ss_pred             CCcCEEEcccCccccccCcccc
Q 003813          537 ASLQILDVAYNNLSGTIPRCIN  558 (793)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p~~~~  558 (793)
                      ..|+.+++++|+++|.+|..+.
T Consensus       374 ~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          374 ITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EECCCBCCBTTBEEEECCTTCB
T ss_pred             eecCccccccCcEEEEcChhHh
Confidence            5677778888888888886543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=334.37  Aligned_cols=257  Identities=17%  Similarity=0.154  Sum_probs=160.1

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +++|+.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|+.|+
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            34455555555555555555555555555555555555555555555555555555555555554444555555555555


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND  574 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  574 (793)
                      +++|.+.+..+.. +..+++|++|++++|...+.+|.......+|+.|++++|++++..+..+.+++.            
T Consensus       183 l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------------  249 (477)
T 2id5_A          183 LRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------------  249 (477)
T ss_dssp             EESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT------------
T ss_pred             CCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc------------
Confidence            5555555322222 224555666666665555555554444556666666666665322223333333            


Q ss_pred             cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCC
Q 003813          575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS  654 (793)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  654 (793)
                                                      |+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++
T Consensus       250 --------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          250 --------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             --------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             --------------------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence                                            366777777777666777788888888888888888888888888888


Q ss_pred             CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813          655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP  716 (793)
Q Consensus       655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  716 (793)
                      |+.|+|++|++++..+..|..+++|++|++++|++.|.|+..+.+.+.....+.++ ..|..|
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            88888888888877777788888888888888888888775544444333444444 445433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.4e-35  Score=322.27  Aligned_cols=344  Identities=25%  Similarity=0.377  Sum_probs=201.9

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      ++++++|+++++.+..++.    +..+++|++|++++|.++++++  +.++++|++|++++|.+.+..+  +.++++|++
T Consensus        45 l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            5677777777777766543    4567777777777777777764  6777777777777777775433  777777777


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT  194 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n  194 (793)
                      |++++|.+++..+  +.++++|++|++++|.+. .++.  ++.+++|++|+++++  +.+.  ..+.++++|+.|++++|
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~~--~~~~--~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGNQ--VTDL--KPLANLTTLERLDISSN  187 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEES--CCCC--GGGTTCTTCCEEECCSS
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCCc--ccCc--hhhccCCCCCEEECcCC
Confidence            7777777776432  677777777777777776 3442  677777777777533  3222  22666666666666666


Q ss_pred             cccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 003813          195 NLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN  274 (793)
Q Consensus       195 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  274 (793)
                      .+++.  ..+..+     ++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.+.
T Consensus       188 ~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          188 KVSDI--SVLAKL-----TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCCCC--GGGGGC-----TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             cCCCC--hhhccC-----CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            55442  113333     566666666666655444  45566666666666666543  24556666666666666665


Q ss_pred             cccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhH
Q 003813          275 GTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF  354 (793)
Q Consensus       275 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~  354 (793)
                      +..+   +..+++|+.|++++|.+.                        +..+  +..+++|++|++++|++.+..+   
T Consensus       257 ~~~~---~~~l~~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~L~~n~l~~~~~---  304 (466)
T 1o6v_A          257 NLAP---LSGLTKLTELKLGANQIS------------------------NISP--LAGLTALTNLELNENQLEDISP---  304 (466)
T ss_dssp             CCGG---GTTCTTCSEEECCSSCCC------------------------CCGG--GTTCTTCSEEECCSSCCSCCGG---
T ss_pred             cchh---hhcCCCCCEEECCCCccC------------------------cccc--ccCCCccCeEEcCCCcccCchh---
Confidence            3322   455555555555555443                        2222  5566777777777777655322   


Q ss_pred             HhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCC
Q 003813          355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPD  434 (793)
Q Consensus       355 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  434 (793)
                      +..                                                         +++|+.|++++|++++..| 
T Consensus       305 ~~~---------------------------------------------------------l~~L~~L~L~~n~l~~~~~-  326 (466)
T 1o6v_A          305 ISN---------------------------------------------------------LKNLTYLTLYFNNISDISP-  326 (466)
T ss_dssp             GGG---------------------------------------------------------CTTCSEEECCSSCCSCCGG-
T ss_pred             hcC---------------------------------------------------------CCCCCEEECcCCcCCCchh-
Confidence            122                                                         3444444444444444333 


Q ss_pred             CccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCccc
Q 003813          435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV  501 (793)
Q Consensus       435 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  501 (793)
                       +..+++|++|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence             34455555555555555532  234455555555555555554444  455555555555555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.4e-36  Score=313.30  Aligned_cols=258  Identities=30%  Similarity=0.550  Sum_probs=242.2

Q ss_pred             CCccEEEccCCcccc--cCCCCccCCCCCCEEEccC-CcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCE
Q 003813          416 KNIEFFQLSKNHFSG--EIPDCWMNWPRLRMLNLRN-NNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEA  492 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  492 (793)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+++.+|..|..+++|++|++++|.+++..|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCC-CcCEEEcccCccccccCccccccccCccccCCCC
Q 003813          493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA-SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQ  571 (793)
Q Consensus       493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  571 (793)
                      |++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++          
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~----------  198 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence            99999999989998887 799999999999999999999999998 999999999999999998776654          


Q ss_pred             CCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC
Q 003813          572 SNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV  651 (793)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  651 (793)
                                                         |+.|++++|++++.+|..+..+++|++|++++|++++.+|. +..
T Consensus       199 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~  242 (313)
T 1ogq_A          199 -----------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL  242 (313)
T ss_dssp             -----------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred             -----------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence                                               37899999999999999999999999999999999977776 889


Q ss_pred             cCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCCCCC
Q 003813          652 MRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLPNC  720 (793)
Q Consensus       652 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c  720 (793)
                      +++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+| .+||.|...|
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence            99999999999999999999999999999999999999999999888888888899999 7999887766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.7e-35  Score=322.65  Aligned_cols=345  Identities=24%  Similarity=0.332  Sum_probs=263.5

Q ss_pred             CCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEE
Q 003813          213 NELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR  292 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  292 (793)
                      ++++.|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+   +.++++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEE
Confidence            578888888887754 33 36778888888888888876544  7788888888888888764332   67777777777


Q ss_pred             CCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc
Q 003813          293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY  372 (793)
Q Consensus       293 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~  372 (793)
                      +++|.+...                         +. +..+++|++|++++|.+.+. +.  +..+++|+.|+++ |.+.
T Consensus       119 L~~n~l~~~-------------------------~~-~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~-~~~~  168 (466)
T 1o6v_A          119 LFNNQITDI-------------------------DP-LKNLTNLNRLELSSNTISDI-SA--LSGLTSLQQLSFG-NQVT  168 (466)
T ss_dssp             CCSSCCCCC-------------------------GG-GTTCTTCSEEEEEEEEECCC-GG--GTTCTTCSEEEEE-ESCC
T ss_pred             CCCCCCCCC-------------------------hH-HcCCCCCCEEECCCCccCCC-hh--hccCCcccEeecC-Cccc
Confidence            777765432                         11 55666777777777766542 21  3445666666664 2221


Q ss_pred             ccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcc
Q 003813          373 GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF  452 (793)
Q Consensus       373 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  452 (793)
                      +.                                   ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+
T Consensus       169 ~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          169 DL-----------------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             CC-----------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             Cc-----------------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            10                                   0133478888999999888754  3478889999999999999


Q ss_pred             cccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCcc
Q 003813          453 TGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ  532 (793)
Q Consensus       453 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  532 (793)
                      ++..|  ++.+++|++|++++|++++.  ..+..+++|+.|++++|.+.+..|  + ..+++|++|++++|++++..+  
T Consensus       212 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--  282 (466)
T 1o6v_A          212 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--  282 (466)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--
T ss_pred             ccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--
Confidence            86655  67789999999999998864  467889999999999999985444  3 368999999999999986543  


Q ss_pred             ccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc
Q 003813          533 LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI  612 (793)
Q Consensus       533 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  612 (793)
                      +..+++|+.|++++|++.+..|  +..+                                            +.|+.|++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l--------------------------------------------~~L~~L~L  316 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNL--------------------------------------------KNLTYLTL  316 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGC--------------------------------------------TTCSEEEC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCC--------------------------------------------CCCCEEEC
Confidence            7889999999999999875433  3333                                            44588999


Q ss_pred             ccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       613 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      ++|++++..|  +..+++|++|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999997766  78999999999999999964  468999999999999999998887  89999999999999999983

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=318.48  Aligned_cols=322  Identities=22%  Similarity=0.282  Sum_probs=209.3

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      +.++.+++.++.+|..     -.+++++|++++|+++++++..|.++++|++|+|++|.+++..|.+|.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEG-----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCcCCCC-----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            4566666666665442     12466777777777777766667777777777777777776666677777777777777


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ  198 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  198 (793)
                      +|.+++..+..|.++++|++|++++|.+.+..+. .|.++++|++|++++|. +.+..+..|..+               
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l---------------  151 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDND-LVYISHRAFSGL---------------  151 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTT-CCEECTTSSTTC---------------
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCc-cceeChhhccCC---------------
Confidence            7777665555666777777777777776633333 36666677777776665 444444444444               


Q ss_pred             cchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccC
Q 003813          199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVS  278 (793)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  278 (793)
                                    ++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++
T Consensus       152 --------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          152 --------------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             --------------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             --------------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence                          455555555555555555556666777777777777776666667777777777777776654444


Q ss_pred             hhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhcc
Q 003813          279 EIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSI  358 (793)
Q Consensus       279 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~  358 (793)
                      ...+                                                 ...+|++|++++|++++ +|...+   
T Consensus       218 ~~~~-------------------------------------------------~~~~L~~L~l~~n~l~~-~~~~~~---  244 (477)
T 2id5_A          218 PNCL-------------------------------------------------YGLNLTSLSITHCNLTA-VPYLAV---  244 (477)
T ss_dssp             TTTT-------------------------------------------------TTCCCSEEEEESSCCCS-CCHHHH---
T ss_pred             cccc-------------------------------------------------cCccccEEECcCCcccc-cCHHHh---
Confidence            3111                                                 11234444444444432 222111   


Q ss_pred             ccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccC
Q 003813          359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMN  438 (793)
Q Consensus       359 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  438 (793)
                                                                            ..+++|+.|++++|.+++..+..|.+
T Consensus       245 ------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          245 ------------------------------------------------------RHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ------------------------------------------------------TTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             ------------------------------------------------------cCccccCeeECCCCcCCccChhhccc
Confidence                                                                  12466777777777777677777778


Q ss_pred             CCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCccccc
Q 003813          439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGN  503 (793)
Q Consensus       439 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  503 (793)
                      +++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            88888888888888877788888888888888888888877777778888888888888887643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-33  Score=303.27  Aligned_cols=313  Identities=18%  Similarity=0.203  Sum_probs=224.3

Q ss_pred             CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEE
Q 003813          261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLY  340 (793)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  340 (793)
                      ++++.|++++|.+. .+|...+.++++|++|++++|.+....+..+..+.+|++|++++|.+.+..|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34444444444443 33333444445555555554444444333444444444444444444445555556666666666


Q ss_pred             eecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccE
Q 003813          341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF  420 (793)
Q Consensus       341 l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~  420 (793)
                      +++|++.. +|...                                                         +..+++|++
T Consensus       124 L~~n~l~~-l~~~~---------------------------------------------------------~~~l~~L~~  145 (390)
T 3o6n_A          124 LERNDLSS-LPRGI---------------------------------------------------------FHNTPKLTT  145 (390)
T ss_dssp             CCSSCCCC-CCTTT---------------------------------------------------------TTTCTTCCE
T ss_pred             CCCCccCc-CCHHH---------------------------------------------------------hcCCCCCcE
Confidence            66666542 22221                                                         122577888


Q ss_pred             EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813          421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL  500 (793)
Q Consensus       421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  500 (793)
                      |++++|.+++..+..|.++++|++|++++|++++.   .+..+++|+.|++++|.+++.     ...++|+.|++++|.+
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI  217 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCee
Confidence            88888888877777888888888888888888854   255678888899988888753     3446788999999988


Q ss_pred             cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813          501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL  580 (793)
Q Consensus       501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  580 (793)
                      . .+|...   .++|++|++++|++++.  ..+..+++|++|++++|.+.+..|..+.++++|                 
T Consensus       218 ~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------  274 (390)
T 3o6n_A          218 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------------  274 (390)
T ss_dssp             C-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------
T ss_pred             e-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------------
Confidence            7 455432   57899999999998854  478888999999999999988778777666555                 


Q ss_pred             CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEEC
Q 003813          581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF  660 (793)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  660 (793)
                                                 +.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|+.|++
T Consensus       275 ---------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          275 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             ---------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ---------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence                                       789999999985 5667788999999999999999 67888999999999999


Q ss_pred             CCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813          661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       661 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  695 (793)
                      ++|+++.. |  +..+++|++|++++|+++|.+..
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence            99999855 3  77889999999999999987543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=319.21  Aligned_cols=333  Identities=17%  Similarity=0.202  Sum_probs=241.8

Q ss_pred             CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEE
Q 003813          261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLY  340 (793)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  340 (793)
                      .+++.+++++|.+. .+|...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34445555554443 33333444555555555555554444444444444444444445555545555556666666666


Q ss_pred             eecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccE
Q 003813          341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF  420 (793)
Q Consensus       341 l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~  420 (793)
                      +++|.+++ +|...                                                         +..+++|+.
T Consensus       130 L~~n~l~~-l~~~~---------------------------------------------------------~~~l~~L~~  151 (597)
T 3oja_B          130 LERNDLSS-LPRGI---------------------------------------------------------FHNTPKLTT  151 (597)
T ss_dssp             CCSSCCCC-CCTTT---------------------------------------------------------TTTCTTCCE
T ss_pred             eeCCCCCC-CCHHH---------------------------------------------------------hccCCCCCE
Confidence            66666543 22211                                                         123678888


Q ss_pred             EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813          421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL  500 (793)
Q Consensus       421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  500 (793)
                      |++++|.+++..|..|.++++|++|++++|.+++..   +..+++|+.|++++|.+++.     ...++|+.|++++|.+
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI  223 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcc
Confidence            888888888888888888999999999999988642   55678899999999988753     3456899999999988


Q ss_pred             cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813          501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL  580 (793)
Q Consensus       501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  580 (793)
                      . .+|...   .++|+.|++++|.+++  +..+..+++|+.|+|++|.+.+..|..+++++.|                 
T Consensus       224 ~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------  280 (597)
T 3oja_B          224 N-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------------  280 (597)
T ss_dssp             C-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------
T ss_pred             c-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------------
Confidence            7 455433   3689999999999986  3678889999999999999998888887776655                 


Q ss_pred             CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEEC
Q 003813          581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF  660 (793)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  660 (793)
                                                 +.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|
T Consensus       281 ---------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          281 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             ---------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ---------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence                                       789999999986 5777788999999999999999 78888999999999999


Q ss_pred             CCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813          661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP  716 (793)
Q Consensus       661 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  716 (793)
                      ++|.+++..   +..+++|++|++++|+++|.++.. .+..+....+.++ ..|+.+
T Consensus       332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            999998653   677899999999999999986543 2444555556666 677754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.5e-33  Score=297.84  Aligned_cols=129  Identities=22%  Similarity=0.301  Sum_probs=97.0

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|++
T Consensus       226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDL  302 (390)
T ss_dssp             SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEEC
T ss_pred             ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEEC
Confidence            4566666666666543  4566777777788877777777777777778888888888887753 455567888888888


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT  552 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (793)
                      ++|++. .+|..+. .+++|++|++++|+++.. +  +..+++|+.|++++|++.+.
T Consensus       303 ~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          303 SHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            888887 6777766 688899999999988843 3  67788999999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.8e-34  Score=295.49  Aligned_cols=252  Identities=25%  Similarity=0.421  Sum_probs=227.9

Q ss_pred             CCCcEEEcccCcccc--cccchhhcccCCCCCccEEEccC-CcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC
Q 003813          388 NLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFFQLSK-NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS  464 (793)
Q Consensus       388 ~~l~~l~ls~n~l~~--~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  464 (793)
                      ..++.+++++|.+.+  .+|..+.    .+++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            345666666666666  5665443    489999999995 999999999999999999999999999999999999999


Q ss_pred             CccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc-cCcEEEccCccccccCCccccCCCCcCEEE
Q 003813          465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS-RLIILNLRSNKFHGDFPIQLCRLASLQILD  543 (793)
Q Consensus       465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  543 (793)
                      +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+. .++ +|++|++++|++++.+|..+..++ |+.|+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            999999999999999999999999999999999999999999888 576 999999999999999999999987 99999


Q ss_pred             cccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcc
Q 003813          544 VAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPV  623 (793)
Q Consensus       544 Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~  623 (793)
                      +++|++++..|..+.+++.|                                            +.|++++|++++.+|.
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNT--------------------------------------------QKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCC--------------------------------------------SEEECCSSEECCBGGG
T ss_pred             CcCCcccCcCCHHHhcCCCC--------------------------------------------CEEECCCCceeeecCc
Confidence            99999998888877766655                                            7899999999977776


Q ss_pred             ccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc-ccc
Q 003813          624 EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN-LNG  691 (793)
Q Consensus       624 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g  691 (793)
                       +..+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+|.. ..+++|+.+++++|+ ++|
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence             888999999999999999999999999999999999999999999987 889999999999999 555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=284.02  Aligned_cols=305  Identities=21%  Similarity=0.292  Sum_probs=160.2

Q ss_pred             CCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCC
Q 003813            8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSS   87 (793)
Q Consensus         8 ~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   87 (793)
                      .+++|++|+++++.++.+++    +..+++|++|++++|.+++++.    +..+++|++|++++|.++.++  .+.++++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~~--~~~~l~~  111 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDIS--ALQNLTN  111 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             hcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence            45555566665555543322    4455555566665555555422    445555556665555555543  3555555


Q ss_pred             CCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcC
Q 003813           88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS  167 (793)
Q Consensus        88 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  167 (793)
                      |++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+. .++.  +..+++|++|+++
T Consensus       112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECT
T ss_pred             CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEcc
Confidence            55555555555532 22 5555555555555554333222 2555555555555555554 2222  4555555555555


Q ss_pred             CCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCC
Q 003813          168 GNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNT  247 (793)
Q Consensus       168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n  247 (793)
                      +|. +.+..+  +..+++                             |+.+++++|.+.+..+  +..+++|++|++++|
T Consensus       186 ~n~-l~~~~~--~~~l~~-----------------------------L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          186 YNQ-IEDISP--LASLTS-----------------------------LHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             TSC-CCCCGG--GGGCTT-----------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             CCc-cccccc--ccCCCc-----------------------------cceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            554 322111  444444                             5555555554433322  444455555555555


Q ss_pred             cCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCC
Q 003813          248 TMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFP  327 (793)
Q Consensus       248 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  327 (793)
                      .+++..+  +..+++|++|++++|.+++ ++  .+..+++|++|++++|.+...  +.+..+++|+.|++++|.+.+..+
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence            5543322  4455555555555555442 21  344555555555555544432  234445555555566666555666


Q ss_pred             cccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc
Q 003813          328 LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY  372 (793)
Q Consensus       328 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~  372 (793)
                      ..+..+++|++|++++|++++..|   ...+++|++|++++|.++
T Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             hHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            667777777777777777766544   445677777777777663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.4e-31  Score=282.30  Aligned_cols=306  Identities=21%  Similarity=0.284  Sum_probs=212.4

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL  112 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  112 (793)
                      ..+++|++|+++++.+..++.    +..+++|++|++++|.++.+++  +.++++|++|++++|.++..  +++..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             hhcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            345556666666665555432    3445556666666665555543  55555666666666555532  245555555


Q ss_pred             CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813          113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG  192 (793)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~  192 (793)
                      ++|++++|.+.+..+  +..+++|++|++++|.....++.  +..+++|++|++++|                       
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~-----------------------  165 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES-----------------------  165 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSS-----------------------
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCC-----------------------
Confidence            555555555554322  55555555555555543323222  455555555555555                       


Q ss_pred             CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC
Q 003813          193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE  272 (793)
Q Consensus       193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  272 (793)
                        .+.+..+  +..+     ++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.
T Consensus       166 --~~~~~~~--~~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          166 --KVKDVTP--IANL-----TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             --CCCCCGG--GGGC-----TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             --CcCCchh--hccC-----CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence              4433222  3333     788899999998865544  7889999999999999997655  8899999999999999


Q ss_pred             CccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccCh
Q 003813          273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR  352 (793)
Q Consensus       273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~  352 (793)
                      +++ ++.  +..+++|++|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|++.+..+.
T Consensus       233 l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          233 ITD-LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             cCC-Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence            984 333  88999999999999998764  4578889999999999999864  4688999999999999999875554


Q ss_pred             hHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813          353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS  401 (793)
Q Consensus       353 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  401 (793)
                      . +..+++|++|++++|++++..| +..      ...++.+++++|.++
T Consensus       306 ~-l~~l~~L~~L~L~~n~l~~~~~-~~~------l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 V-IGGLTNLTTLFLSQNHITDIRP-LAS------LSKMDSADFANQVIK  346 (347)
T ss_dssp             H-HHTCTTCSEEECCSSSCCCCGG-GGG------CTTCSEESSSCC---
T ss_pred             H-hhccccCCEEEccCCccccccC-hhh------hhccceeehhhhccc
Confidence            4 4568999999999999987766 333      678999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.4e-31  Score=302.66  Aligned_cols=311  Identities=19%  Similarity=0.233  Sum_probs=207.4

Q ss_pred             CCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcE
Q 003813          109 LTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS  188 (793)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  188 (793)
                      +.+++.+++++|.+..+.+..|..+++|++|++++|.+. .++...|+.+++|++|++++|. +.+..|..|+++     
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-----  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV-----  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC-----
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCC-----
Confidence            456666666666666655555566666666666666665 3333235666666666666655 444444444444     


Q ss_pred             EEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813          189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL  268 (793)
Q Consensus       189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  268 (793)
                                              ++|++|++++|.+.+..+..|+.+++|++|++++|.+++..|..|+.+++|++|++
T Consensus       123 ------------------------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          123 ------------------------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             ------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             ------------------------CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence                                    45555666666655544455566667777777777776666666666777777777


Q ss_pred             cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccc
Q 003813          269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA  348 (793)
Q Consensus       269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~  348 (793)
                      ++|.+++.    .+..+++|+.|++++|.+.+.                             ...++|+.|++++|.+..
T Consensus       179 ~~N~l~~~----~~~~l~~L~~L~l~~n~l~~l-----------------------------~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          179 SSNRLTHV----DLSLIPSLFHANVSYNLLSTL-----------------------------AIPIAVEELDASHNSINV  225 (597)
T ss_dssp             TTSCCSBC----CGGGCTTCSEEECCSSCCSEE-----------------------------ECCTTCSEEECCSSCCCE
T ss_pred             cCCCCCCc----ChhhhhhhhhhhcccCccccc-----------------------------cCCchhheeeccCCcccc
Confidence            77766532    234455555555555544321                             111234444444443322


Q ss_pred             ccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcc
Q 003813          349 KIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF  428 (793)
Q Consensus       349 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l  428 (793)
                      .                         .+                                    ...++|+.|++++|.+
T Consensus       226 ~-------------------------~~------------------------------------~~~~~L~~L~L~~n~l  244 (597)
T 3oja_B          226 V-------------------------RG------------------------------------PVNVELTILKLQHNNL  244 (597)
T ss_dssp             E-------------------------EC------------------------------------SCCSCCCEEECCSSCC
T ss_pred             c-------------------------cc------------------------------------ccCCCCCEEECCCCCC
Confidence            1                         00                                    0025678888888888


Q ss_pred             cccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhH
Q 003813          429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM  508 (793)
Q Consensus       429 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  508 (793)
                      ++  +..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++. |..+..+++|+.|+|++|.++ .+|.++
T Consensus       245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~  320 (597)
T 3oja_B          245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQ  320 (597)
T ss_dssp             CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCccc
Confidence            75  36678888999999999999888888888899999999999998864 566677899999999999998 788877


Q ss_pred             HhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccc
Q 003813          509 GERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT  552 (793)
Q Consensus       509 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (793)
                      . .+++|++|++++|++++. |  +..+++|+.|++++|++.+.
T Consensus       321 ~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          321 P-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             H-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             c-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            6 689999999999999854 3  67788999999999998764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.6e-34  Score=316.09  Aligned_cols=389  Identities=16%  Similarity=0.108  Sum_probs=192.9

Q ss_pred             CCccEEEccCcccccccccc-cCCCCCCCEEeCcCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhhhhcCC-
Q 003813          213 NELESLDLGSCQIFGHMTNQ-LGRFKGLNFLDLSNTTMDG----SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT-  286 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  286 (793)
                      ++|++|++++|+++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+...+..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34555555555554332222 4445555556665555553    23444555566666666666654332222223333 


Q ss_pred             ---CCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhc----cc
Q 003813          287 ---KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS----IF  359 (793)
Q Consensus       287 ---~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~----~~  359 (793)
                         +|++|++++|.+.....                    ..++..+..+++|++|++++|.+.+..+..+...    .+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence               34444444444321000                    0224445556666666666666654434333322    12


Q ss_pred             cccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCcc--
Q 003813          360 QYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWM--  437 (793)
Q Consensus       360 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--  437 (793)
                      +|++|++++|                             .+++.....+...+..+++|+.|++++|.+++..+..+.  
T Consensus       143 ~L~~L~L~~n-----------------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  193 (461)
T 1z7x_W          143 RLEKLQLEYC-----------------------------SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG  193 (461)
T ss_dssp             CCCEEECTTS-----------------------------CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             cceEEECCCC-----------------------------CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence            2333333333                             333322222223333356666666666666544333332  


Q ss_pred             ---CCCCCCEEEccCCccccc----CCCCCCCCCCccEEEccCCcccccc-----CccccCCCCCCEEeCCCCccccc--
Q 003813          438 ---NWPRLRMLNLRNNNFTGS----LPMSIGTLSSLMSLNLRNNRLSGII-----PTSFNNFTILEALDMGENELVGN--  503 (793)
Q Consensus       438 ---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~--  503 (793)
                         ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.  
T Consensus       194 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~  273 (461)
T 1z7x_W          194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC  273 (461)
T ss_dssp             HHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             HhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH
Confidence               244666666666666642    3444555666666666666665432     22223456666666666666532  


Q ss_pred             --CchhHHhhcccCcEEEccCccccccCCcccc-----CCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          504 --IPTWMGERFSRLIILNLRSNKFHGDFPIQLC-----RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       504 --~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                        ++..+. .+++|++|++++|++.+..+..+.     ..++|+.|++++|.+++.....+                   
T Consensus       274 ~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-------------------  333 (461)
T 1z7x_W          274 GDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-------------------  333 (461)
T ss_dssp             HHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-------------------
T ss_pred             HHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH-------------------
Confidence              344433 456666666666666533222222     12466666666666653211100                   


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc-----ccCCceeeccCCcccc----cCCc
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN-----LQGLQSLNFSYNLFTG----RIPD  647 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~  647 (793)
                                           .......+.|+.||+++|.+++..+..+..     .++|++|++++|++++    .+|.
T Consensus       334 ---------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          334 ---------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             ---------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ---------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence                                 011112334466666666666544444432     4566777777776664    5666


Q ss_pred             cccCcCCCCEEECCCCcCCCCCccccc-----CCCCCCeEEcccCcccc
Q 003813          648 NIGVMRSIESLDFSANQLSGYIPQSMS-----NLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       648 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g  691 (793)
                      .+..+++|+.|++++|++++.....+.     ....|+.|++.++.+..
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            666666777777777766643211111     23346666666555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.3e-34  Score=315.00  Aligned_cols=381  Identities=19%  Similarity=0.174  Sum_probs=190.5

Q ss_pred             CCccEEEccCCCCCCCCCcc-CCCCCCCCEEECcCccCCC----cccccccCCCCCCEEeCcCCcCccCCcccc-cCCC-
Q 003813           62 PSLKELKLSFCKLHHFPPLS-SANFSSLTTLDLSENEFQG----QIPSRLGNLTSLKYLDLSFNQFNSVVPGWL-SKLN-  134 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~-  134 (793)
                      ++|++|++++|+++...... +..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46777777777776554322 5667777777777777763    235566677777777777777665333222 2333 


Q ss_pred             ---CCCEEEccCCcccc----ccChhhhcCCCCCcEEEcCCCCCCCCCCccccc-----CCCCCcEEEccCCcccccc--
Q 003813          135 ---DLEFLSLQSNRLQG----NISSLGLENLTSIQTLLLSGNDELGGKIPTSFG-----RFCKLKSFSTGFTNLSQDI--  200 (793)
Q Consensus       135 ---~L~~L~L~~n~l~~----~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~--  200 (793)
                         +|++|++++|.+..    .++.. +..+++|++|++++|. +.+..+..+.     ..++|++|++++|.+++..  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence               57777777777652    22332 6666677777777665 4332222221     2344555555555555432  


Q ss_pred             --hhHHhhhccccCCCccEEEccCcccccccccccC-----CCCCCCEEeCcCCcCCCC----cchhhcCCCCCCEEEcc
Q 003813          201 --SEILGIFSACVANELESLDLGSCQIFGHMTNQLG-----RFKGLNFLDLSNTTMDGS----IPLSLGQIANLEYLDLS  269 (793)
Q Consensus       201 --~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~  269 (793)
                        +..+...     ++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|+++
T Consensus       161 ~l~~~l~~~-----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  235 (461)
T 1z7x_W          161 PLASVLRAK-----PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  235 (461)
T ss_dssp             HHHHHHHHC-----TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHhhC-----CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence              2222222     4555555555554433322221     133555555555555432    23444445555555555


Q ss_pred             CCCCccccC----hhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCC----CCcccccCCCCCeEEe
Q 003813          270 KNELNGTVS----EIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPR----FPLWLQSQKKLNDLYI  341 (793)
Q Consensus       270 ~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l  341 (793)
                      +|.+.+...    ...+..+++|++|++                        ++|.++..    ++..+..+++|++|++
T Consensus       236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L------------------------~~n~l~~~~~~~l~~~l~~~~~L~~L~L  291 (461)
T 1z7x_W          236 SNKLGDVGMAELCPGLLHPSSRLRTLWI------------------------WECGITAKGCGDLCRVLRAKESLKELSL  291 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEEC------------------------TTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCcCChHHHHHHHHHHhcCCCCceEEEC------------------------cCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence            554432110    101112333333333                        33333321    3444555666666666


Q ss_pred             ecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEE
Q 003813          342 SSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF  421 (793)
Q Consensus       342 ~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L  421 (793)
                      ++|.+.+..+..+...+.                                                     ...++|+.|
T Consensus       292 s~n~i~~~~~~~l~~~l~-----------------------------------------------------~~~~~L~~L  318 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLL-----------------------------------------------------EPGCQLESL  318 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHT-----------------------------------------------------STTCCCCEE
T ss_pred             CCCCCchHHHHHHHHHhc-----------------------------------------------------cCCccceee
Confidence            666665433333322110                                                     002345555


Q ss_pred             EccCCccccc----CCCCccCCCCCCEEEccCCcccccCCCCCCC-----CCCccEEEccCCcccc----ccCccccCCC
Q 003813          422 QLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT-----LSSLMSLNLRNNRLSG----IIPTSFNNFT  488 (793)
Q Consensus       422 ~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~  488 (793)
                      ++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            5555555433    2334444555666666666555433322221     4466666666666654    4455555566


Q ss_pred             CCCEEeCCCCcccccCchhHHhh----cccCcEEEccCcccc
Q 003813          489 ILEALDMGENELVGNIPTWMGER----FSRLIILNLRSNKFH  526 (793)
Q Consensus       489 ~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~  526 (793)
                      +|++|++++|++++.-...+.+.    ..+|+.|.+.++.+.
T Consensus       399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            66666666666553322222211    224666666655554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.5e-29  Score=264.42  Aligned_cols=253  Identities=22%  Similarity=0.232  Sum_probs=208.1

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      ..++++++++++.++.+|..     -.+++++|++++|+++++++..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKD-----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER  104 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCS-----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             cCCCeEEEecCCCccccCcc-----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence            34788999999988887652     2368899999999999998888999999999999999999877889999999999


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC--CCCcccccCCCCCcEEEcc
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG--GKIPTSFGRFCKLKSFSTG  192 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~l~~l~~L~~L~l~  192 (793)
                      |++++|.++. +|..+.  ++|++|++++|.+. .++...+.++++|++|++++|. +.  +..+..+..+++|+.|+++
T Consensus       105 L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          105 LYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             EECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECC
Confidence            9999999886 454443  78999999999998 6666668999999999999987 54  3667788889999999999


Q ss_pred             CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC
Q 003813          193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE  272 (793)
Q Consensus       193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  272 (793)
                      .|.++. +|..+       .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus       180 ~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          180 DTNITT-IPQGL-------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             SSCCCS-CCSSC-------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             CCcccc-CCccc-------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            888775 33322       1679999999999888888888899999999999999988777788889999999999998


Q ss_pred             CccccChhhhhcCCCCcEEECCCCeeeeecCCCCC
Q 003813          273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWV  307 (793)
Q Consensus       273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  307 (793)
                      ++ .+|. .+..+++|++|++++|+++......|.
T Consensus       252 l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          252 LV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             CS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             Cc-cCCh-hhccCCCcCEEECCCCcCCccChhhcC
Confidence            87 6665 578888899999998888766555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.8e-30  Score=268.41  Aligned_cols=288  Identities=20%  Similarity=0.223  Sum_probs=232.8

Q ss_pred             CcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEE
Q 003813           36 SLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL  115 (793)
Q Consensus        36 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  115 (793)
                      .+++.++++++.++.+|..   +  .++|++|++++|.++++++..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~---~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKE---I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSSCCSC---C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             ccCCEEECCCCCccccCCC---C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            4789999999999887653   2  3789999999999999988889999999999999999998888899999999999


Q ss_pred             eCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC--CCCcccccCCCCCcEEEccC
Q 003813          116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG--GKIPTSFGRFCKLKSFSTGF  193 (793)
Q Consensus       116 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~l~~l~~L~~L~l~~  193 (793)
                      ++++|.++. +|..+.  ++|++|++++|.+. .++...+.++++|++|++++|. +.  +..+..+..+ +|+.|+++.
T Consensus       108 ~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          108 YISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             ECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcC
Confidence            999999986 454443  79999999999998 6666668999999999999998 54  4667788888 999999999


Q ss_pred             CcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 003813          194 TNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL  273 (793)
Q Consensus       194 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  273 (793)
                      |.+++ +|..+       .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.++..+++|++|++++|++
T Consensus       182 n~l~~-l~~~~-------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          182 AKLTG-IPKDL-------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             SBCSS-CCSSS-------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCc-cCccc-------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            99876 44332       16899999999999988888999999999999999999988888899999999999999999


Q ss_pred             ccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCc------ccccEEEccCccCC--CCCCcccccCCCCCeEEeecC
Q 003813          274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP------FQLTGLGVRSCRLG--PRFPLWLQSQKKLNDLYISST  344 (793)
Q Consensus       274 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n  344 (793)
                      + .+|. .+..+++|+.|++++|+++......|...      ..++.+++++|++.  ...|.++..+++|+.+++++|
T Consensus       254 ~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          254 S-RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             C-BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             e-ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            8 6776 58899999999999999987666555432      34556666666554  334444555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.2e-30  Score=269.74  Aligned_cols=221  Identities=20%  Similarity=0.269  Sum_probs=168.2

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccc--cccCccccCCCCCCE
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLS--GIIPTSFNNFTILEA  492 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~  492 (793)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.++  +..+..+..+ +|+.
T Consensus       101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            566777777777766 3444333  67788888888877666666777788888888888775  3566777777 7888


Q ss_pred             EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCC
Q 003813          493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS  572 (793)
Q Consensus       493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  572 (793)
                      |++++|+++ .+|..+.   ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|         
T Consensus       177 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------  243 (332)
T 2ft3_A          177 LRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------  243 (332)
T ss_dssp             CBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------
T ss_pred             EECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------
Confidence            888888887 4666543   678888888888887777788888889999999988887666566555444         


Q ss_pred             CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813          573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM  652 (793)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  652 (793)
                                                         +.|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus       244 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          244 -----------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             -----------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             -----------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence                                               78899999888 788888999999999999999997777777653


Q ss_pred             ------CCCCEEECCCCcCC--CCCcccccCCCCCCeEEcccCc
Q 003813          653 ------RSIESLDFSANQLS--GYIPQSMSNLSFLNYLNLSNNN  688 (793)
Q Consensus       653 ------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  688 (793)
                            ..|+.|++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  67899999999987  6778889999999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-29  Score=267.07  Aligned_cols=222  Identities=19%  Similarity=0.269  Sum_probs=124.2

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccc--ccCccccCCCCCCE
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG--IIPTSFNNFTILEA  492 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~  492 (793)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+..  ..+..+.++++|++
T Consensus        99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A           99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            344555555555554 2233222  455555555555555444455555555666665555542  44555556666666


Q ss_pred             EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCC
Q 003813          493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS  572 (793)
Q Consensus       493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  572 (793)
                      |++++|.++ .+|..+.   ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|         
T Consensus       176 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------  242 (330)
T 1xku_A          176 IRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------  242 (330)
T ss_dssp             EECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------
T ss_pred             EECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------
Confidence            666666655 4554332   456666666666665555666666666666666666655444444433333         


Q ss_pred             CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC-
Q 003813          573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV-  651 (793)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  651 (793)
                                                         +.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. 
T Consensus       243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence                                               56666666666 55666666666666666666666555555533 


Q ss_pred             -----cCCCCEEECCCCcCCC--CCcccccCCCCCCeEEcccCc
Q 003813          652 -----MRSIESLDFSANQLSG--YIPQSMSNLSFLNYLNLSNNN  688 (793)
Q Consensus       652 -----l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  688 (793)
                           .+.|+.|++++|.+..  ..|..|..++.++.+++++|+
T Consensus       287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                 2556666666666653  445666666666666666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.6e-29  Score=259.51  Aligned_cols=254  Identities=20%  Similarity=0.229  Sum_probs=216.8

Q ss_pred             cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc--CCCCCCCCCCccE
Q 003813          391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS--LPMSIGTLSSLMS  468 (793)
Q Consensus       391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~  468 (793)
                      +.++++++.++.. |..      ..++++.|++++|.++...+..|.++++|++|++++|+++..  .+..+..+++|++
T Consensus        10 ~~l~c~~~~l~~i-p~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTG------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TEEECCSSCCSSC-CSC------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CEEEcCCCCcccC-CCC------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            4556666655432 221      146899999999999976666789999999999999999843  3566778999999


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813          469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN  548 (793)
Q Consensus       469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  548 (793)
                      |++++|.+++ +|..+..+++|++|++++|++++..+...+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus        83 L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            9999999985 566799999999999999999844432344479999999999999998888889999999999999999


Q ss_pred             ccc-ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813          549 LSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN  627 (793)
Q Consensus       549 l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  627 (793)
                      +.+ .+|..+..+++|                                            +.|++++|++++..|..+..
T Consensus       162 l~~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          162 FQENFLPDIFTELRNL--------------------------------------------TFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             EGGGEECSCCTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTTT
T ss_pred             cccccchhHHhhCcCC--------------------------------------------CEEECCCCCcCCcCHHHhcC
Confidence            986 567776665554                                            88999999999988999999


Q ss_pred             ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCC-CCCeEEcccCcccccCCCC
Q 003813          628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS-FLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~  696 (793)
                      +++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.++..
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            99999999999999988888899999999999999999999999999985 9999999999999988754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.1e-28  Score=269.00  Aligned_cols=253  Identities=22%  Similarity=0.237  Sum_probs=219.3

Q ss_pred             CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEE
Q 003813          390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL  469 (793)
Q Consensus       390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  469 (793)
                      ...++.++..++. +|..+      .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        56 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            3456666666554 33222      4789999999999999999999999999999999999999888999999999999


Q ss_pred             EccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcc-ccccCCccccCCCCcCEEEcccCc
Q 003813          470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK-FHGDFPIQLCRLASLQILDVAYNN  548 (793)
Q Consensus       470 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~  548 (793)
                      +|++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|++++|. +....+..+..+++|+.|++++|+
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            99999999888888999999999999999998 6666666689999999999954 444444568899999999999999


Q ss_pred             cccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc
Q 003813          549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL  628 (793)
Q Consensus       549 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l  628 (793)
                      +++ +| .+..                                            ++.|+.|+|++|++++..|..|.++
T Consensus       208 l~~-~~-~~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          208 IKD-MP-NLTP--------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             CSS-CC-CCTT--------------------------------------------CTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             ccc-cc-cccc--------------------------------------------cccccEEECcCCcCcccCcccccCc
Confidence            974 33 2333                                            3446899999999999999999999


Q ss_pred             cCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          629 QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       629 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            99999999999999999999999999999999999999888889999999999999999999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=6.7e-29  Score=259.70  Aligned_cols=227  Identities=16%  Similarity=0.236  Sum_probs=202.4

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      .+.++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999999998 67888888999999999999999 88889999999999999999999 6788899999999999


Q ss_pred             CCCCcccccCchhHH--------hhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccc
Q 003813          495 MGENELVGNIPTWMG--------ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT  566 (793)
Q Consensus       495 L~~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  566 (793)
                      +++|++.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+.++++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            999988888988764        14889999999999999 788889999999999999999984 56556655544   


Q ss_pred             cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCC
Q 003813          567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP  646 (793)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  646 (793)
                                                               +.|++++|++.+.+|..++++++|++|+|++|++.+.+|
T Consensus       232 -----------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          232 -----------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             -----------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             -----------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence                                                     789999999999999999999999999999999999999


Q ss_pred             ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccc
Q 003813          647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN  690 (793)
Q Consensus       647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  690 (793)
                      ..++++++|+.|++++|++.+.+|..+.++++|+.+++..|.+.
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999977654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=266.62  Aligned_cols=253  Identities=22%  Similarity=0.226  Sum_probs=217.8

Q ss_pred             CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEE
Q 003813          390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL  469 (793)
Q Consensus       390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  469 (793)
                      ...++.++..++. +|..+      .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        45 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            3456666665553 33222      3789999999999999888999999999999999999998888899999999999


Q ss_pred             EccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcc-ccccCCccccCCCCcCEEEcccCc
Q 003813          470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK-FHGDFPIQLCRLASLQILDVAYNN  548 (793)
Q Consensus       470 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~  548 (793)
                      +|++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|++++|. +....+..|.++++|+.|++++|+
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            99999999888888999999999999999998 5666555589999999999954 444444578899999999999999


Q ss_pred             cccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc
Q 003813          549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL  628 (793)
Q Consensus       549 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l  628 (793)
                      ++ .+|. +..                                            ++.|+.|||++|++++..|..|.++
T Consensus       197 l~-~~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          197 LR-EIPN-LTP--------------------------------------------LIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             CS-SCCC-CTT--------------------------------------------CSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             Cc-cccc-cCC--------------------------------------------CcccCEEECCCCccCccChhhhccC
Confidence            97 4442 333                                            3446899999999999999999999


Q ss_pred             cCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          629 QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       629 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            99999999999999999999999999999999999999888889999999999999999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.3e-30  Score=296.11  Aligned_cols=424  Identities=15%  Similarity=0.081  Sum_probs=230.6

Q ss_pred             hCCCCCccEEEccCCCCC---CCCCccCC------------CCCCCCEEECcCccCCCcccccccCC-C-CCCEEeCcCC
Q 003813           58 INSLPSLKELKLSFCKLH---HFPPLSSA------------NFSSLTTLDLSENEFQGQIPSRLGNL-T-SLKYLDLSFN  120 (793)
Q Consensus        58 ~~~l~~L~~L~Ls~n~l~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l-~-~L~~L~Ls~n  120 (793)
                      +..+++|++|++++|...   +..+..++            .+++|++|+|++|.+++..+..+... + +|++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            445667777777665321   11111111            56777777777777765555555543 3 4777777776


Q ss_pred             cC-cc-CCcccccCCCCCCEEEccCCccccc----cChhhhcCCCCCcEEEcCCCCCCC----CCCcccccCCCCCcEEE
Q 003813          121 QF-NS-VVPGWLSKLNDLEFLSLQSNRLQGN----ISSLGLENLTSIQTLLLSGNDELG----GKIPTSFGRFCKLKSFS  190 (793)
Q Consensus       121 ~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~l~~l~~L~~L~  190 (793)
                      .- .. .++.....+++|++|++++|.+.+.    ++.. +..+++|++|++++|. +.    +.++..+.++++|+.|+
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEe
Confidence            51 11 1122223677777888877776533    2222 4567777777777776 44    23344456677777777


Q ss_pred             ccCCcccccchhHHhhhccccCCCccEEEccCcccc---cccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEE
Q 003813          191 TGFTNLSQDISEILGIFSACVANELESLDLGSCQIF---GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD  267 (793)
Q Consensus       191 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  267 (793)
                      ++.+.+.+ ++..+..+     ++|++|+++++...   +..+..+..+++|+.|+++++... .+|..+..+++|++|+
T Consensus       227 L~~~~~~~-l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          227 VGDFEILE-LVGFFKAA-----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CSSCBGGG-GHHHHHHC-----TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEE
T ss_pred             ccCccHHH-HHHHHhhh-----hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEe
Confidence            77776665 55666665     77777777753322   223345666777777777775433 5666677777788888


Q ss_pred             ccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeec----
Q 003813          268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISS----  343 (793)
Q Consensus       268 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----  343 (793)
                      +++|.+++......+.++++|++|+++ +.+...                       .++.....+++|++|++++    
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-----------------------~l~~~~~~~~~L~~L~L~~g~~~  355 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-----------------------GLEVLAQYCKQLKRLRIERGADE  355 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-----------------------HHHHHHHHCTTCCEEEEECCCCS
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-----------------------HHHHHHHhCCCCCEEEeecCccc
Confidence            877776544333345667777777766 222111                       1122223445555555552    


Q ss_pred             -------CccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCC
Q 003813          344 -------TRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK  416 (793)
Q Consensus       344 -------n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~  416 (793)
                             +.+++.....+...+++|++|+++.|.+++                             ..+..+..   .++
T Consensus       356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-----------------------------~~~~~l~~---~~~  403 (592)
T 3ogk_B          356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-----------------------------ESLESIGT---YLK  403 (592)
T ss_dssp             STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-----------------------------HHHHHHHH---HCC
T ss_pred             cccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-----------------------------HHHHHHHh---hCC
Confidence                   333332222333334444444444333322                             11111111   134


Q ss_pred             CccEEEcc----CCccccc-----CCCCccCCCCCCEEEccCCc--ccccCCCCCC-CCCCccEEEccCCccccc-cCcc
Q 003813          417 NIEFFQLS----KNHFSGE-----IPDCWMNWPRLRMLNLRNNN--FTGSLPMSIG-TLSSLMSLNLRNNRLSGI-IPTS  483 (793)
Q Consensus       417 ~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~  483 (793)
                      +|+.|+++    .|.+++.     ++..+.++++|++|++++|.  +++..+..+. .+++|++|++++|++++. .+..
T Consensus       404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  483 (592)
T 3ogk_B          404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF  483 (592)
T ss_dssp             SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred             CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence            55555554    3444432     22224456667777775432  4433332222 256677777777776642 3344


Q ss_pred             ccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc-cCCCCcCEEEccc
Q 003813          484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL-CRLASLQILDVAY  546 (793)
Q Consensus       484 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~  546 (793)
                      +.++++|++|++++|++++.....+...+++|++|++++|++++.-...+ ..++.+....+..
T Consensus       484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            46677777777777776544334444457777777777777664422222 2445555444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.1e-28  Score=253.52  Aligned_cols=235  Identities=20%  Similarity=0.219  Sum_probs=178.2

Q ss_pred             cEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCC
Q 003813          419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN  498 (793)
Q Consensus       419 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  498 (793)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            456666666663 34433  356777777777777666666777777777777777777776777777777777777777


Q ss_pred             c-ccccC-chhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          499 E-LVGNI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       499 ~-l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                      + +. .+ |..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+.++++|             
T Consensus        91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------  155 (285)
T 1ozn_A           91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------  155 (285)
T ss_dssp             TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence            6 55 44 33333 67778888888888777667777788888888888888875555445554443             


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE  656 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  656 (793)
                                                     +.|++++|++++..+..+..+++|++|++++|++++..|..|+.+++|+
T Consensus       156 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          156 -------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             -------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                                           7788888888877777788999999999999999988899999999999


Q ss_pred             EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCc
Q 003813          657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF  702 (793)
Q Consensus       657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~  702 (793)
                      .|++++|++++..+..+..+++|++|++++|++.|.++..+...++
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            9999999999887788999999999999999999988765433333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=264.21  Aligned_cols=259  Identities=17%  Similarity=0.198  Sum_probs=168.8

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            45666666666666555555666666666666666666555555666666666666666666544444566666666666


Q ss_pred             CCCcccccCch-hHHhhcccCcEEEccCc-cccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813          496 GENELVGNIPT-WMGERFSRLIILNLRSN-KFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN  573 (793)
Q Consensus       496 ~~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  573 (793)
                      ++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++.+..|..+.++++|+.++...+..
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            666665 4444 22335666666666666 34444445566666666666666666655566666665555544333211


Q ss_pred             ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccc---cccCCceeeccCCcccc----cCC
Q 003813          574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT---NLQGLQSLNFSYNLFTG----RIP  646 (793)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p  646 (793)
                                          ..........++.|+.|++++|++++..+..+.   ....++.++++++.+++    .+|
T Consensus       211 --------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          211 --------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             --------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             --------------------ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence                                011112233467789999999999876655443   45678888888888876    478


Q ss_pred             ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813          647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  695 (793)
                      +.++.+++|+.|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            8899999999999999999944444469999999999999999999884

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.1e-30  Score=293.91  Aligned_cols=386  Identities=12%  Similarity=0.023  Sum_probs=228.1

Q ss_pred             CCCCCCEEeCcCCcCCCCcchhhcC-CC-CCCEEEccCCC-CccccChhhhhcCCCCcEEECCCCeeeeecC----CCCC
Q 003813          235 RFKGLNFLDLSNTTMDGSIPLSLGQ-IA-NLEYLDLSKNE-LNGTVSEIHFVNLTKLVTFRANGNSLIFKIN----PNWV  307 (793)
Q Consensus       235 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~  307 (793)
                      .+++|++|++++|.+++..+.+++. ++ +|++|++++|. +..........++++|++|++++|.+.+...    ....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5566777777777666555555544 23 37777776665 1111111123466777777777776543311    1122


Q ss_pred             CcccccEEEccCccCC----CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCC
Q 003813          308 PPFQLTGLGVRSCRLG----PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM  383 (793)
Q Consensus       308 ~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  383 (793)
                      .+++|++|+++.|.+.    ..++..+..+++|++|++++|.+.+ ++ ..+..+++|+.|+++.....  .+.      
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~--~~~------  259 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED--IGM------  259 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC--TTC------
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc--cch------
Confidence            3456666666666654    2344456678888888888888765 44 44556778888888753211  110      


Q ss_pred             CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCC
Q 003813          384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGT  462 (793)
Q Consensus       384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  462 (793)
                                            ......+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..
T Consensus       260 ----------------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          260 ----------------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             ----------------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             ----------------------HHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence                                  00012233356777777776533 3456666677788888888877654332 23466


Q ss_pred             CCCccEEEccCCccccccCccccCCCCCCEEeCC-----------CCcccccCchhHHhhcccCcEEEccCccccccCCc
Q 003813          463 LSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG-----------ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI  531 (793)
Q Consensus       463 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----------~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  531 (793)
                      +++|++|+++++-..+.++..+..+++|++|+++           .|.+++.....+...+++|++|+++.|.+++..+.
T Consensus       317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            7788888887333333334444667778888887           35555433333344677888888877777766555


Q ss_pred             cccC-CCCcCEEEcc----cCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccc
Q 003813          532 QLCR-LASLQILDVA----YNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNL  606 (793)
Q Consensus       532 ~~~~-l~~L~~L~Ls----~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (793)
                      .+.. +++|+.|+++    .|.+++...+.                                      + .......++.
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------------------------------~-~~~~~~~~~~  437 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDN--------------------------------------G-VRSLLIGCKK  437 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------------------------------H-HHHHHHHCTT
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHH--------------------------------------H-HHHHHHhCCC
Confidence            5554 7778888886    44554310000                                      0 0011222455


Q ss_pred             eeEEEcccCc--ceeeCcccccc-ccCCceeeccCCcccc-cCCccccCcCCCCEEECCCCcCCCC-CcccccCCCCCCe
Q 003813          607 VRGIDISKNN--FSGEVPVEVTN-LQGLQSLNFSYNLFTG-RIPDNIGVMRSIESLDFSANQLSGY-IPQSMSNLSFLNY  681 (793)
Q Consensus       607 L~~L~Ls~N~--l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~  681 (793)
                      |+.|++++|.  +++..+..+.. +++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++.....+++|++
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence            6777776433  55555554443 6778888888888775 3445556778888888888887644 3444456778888


Q ss_pred             EEcccCccccc
Q 003813          682 LNLSNNNLNGE  692 (793)
Q Consensus       682 L~ls~N~l~g~  692 (793)
                      |++++|++++.
T Consensus       518 L~ls~n~it~~  528 (592)
T 3ogk_B          518 LWVQGYRASMT  528 (592)
T ss_dssp             EEEESCBCCTT
T ss_pred             eECcCCcCCHH
Confidence            88888877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.9e-28  Score=255.03  Aligned_cols=280  Identities=19%  Similarity=0.195  Sum_probs=218.4

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCC
Q 003813            7 GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFS   86 (793)
Q Consensus         7 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   86 (793)
                      ..++.....|.+++.++.+|..+     .++|++|++++|.+++++.  ..+.++++|++|++++|+++++++..|.+++
T Consensus        28 ~~C~~~~~c~~~~~~l~~iP~~~-----~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSIPSGL-----TEAVKSLDLSNNRITYISN--SDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             CEECTTSEEECCSTTCSSCCTTC-----CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCCCeEeeCCCCCcccccccc-----cccCcEEECCCCcCcccCH--HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            34566667888888888777654     2589999999999887643  2467889999999999999988887888999


Q ss_pred             CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCc-ccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEE
Q 003813           87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP-GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLL  165 (793)
Q Consensus        87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  165 (793)
                      +|++|++++|.+++..+..|.++++|++|++++|++++..+ ..+.++++|++|++++|...+.++...++++++|++|+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            99999999999986666668889999999999999887544 47888999999999998533366555588899999999


Q ss_pred             cCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccC---CCCCCCEE
Q 003813          166 LSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLG---RFKGLNFL  242 (793)
Q Consensus       166 L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L  242 (793)
                      +++|. +.+..|..+..+++|++|++++|.+.......+..+     ++|++|++++|.+.+..+..+.   ....++.+
T Consensus       181 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          181 IDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-----SSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             EEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-----TTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             CCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhc-----ccccEEECCCCccccccccccccccccchhhcc
Confidence            99988 788888889999999999999988864333334444     7899999999988776554433   45678888


Q ss_pred             eCcCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeee
Q 003813          243 DLSNTTMDG----SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF  300 (793)
Q Consensus       243 ~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  300 (793)
                      +++++.+++    .+|.++..+++|++|++++|+++ .+|...|.++++|++|++++|++.+
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            888888775    35677888888888888888887 6666567788888888888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.9e-27  Score=247.29  Aligned_cols=249  Identities=21%  Similarity=0.244  Sum_probs=164.6

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCc--ccccccCCCCCCEEe
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLD  116 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~  116 (793)
                      +.++++++.++.+|..     -.++|++|++++|+++.+++..|.++++|++|++++|.++..  .+.++..+++|++|+
T Consensus        10 ~~l~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSCCSC-----CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcccCCCC-----CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            4567777777666542     225677777777777777776677777788888877777632  255666777888888


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL  196 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  196 (793)
                      +++|.+.. +|..+..+++|++|++++|.+.+..+...+..+++|++|++++|. +.+..+..+..+++|+.|++++|.+
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcc
Confidence            88877765 555677777888888888777733322347777777777777776 6666666666666666666666666


Q ss_pred             cc-cchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 003813          197 SQ-DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG  275 (793)
Q Consensus       197 ~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  275 (793)
                      ++ .+|..+..+     ++|++|++++|++.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus       163 ~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          163 QENFLPDIFTEL-----RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             GGGEECSCCTTC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             ccccchhHHhhC-----cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            54 344444444     666667777766666666666666777777777777666555566666677777777776665


Q ss_pred             ccChhhhhcCC-CCcEEECCCCeeee
Q 003813          276 TVSEIHFVNLT-KLVTFRANGNSLIF  300 (793)
Q Consensus       276 ~~~~~~~~~l~-~L~~L~l~~n~l~~  300 (793)
                      ..+. .+..++ +|++|++++|++.+
T Consensus       238 ~~~~-~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          238 SKKQ-ELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CSSS-SCCCCCTTCCEEECTTCCEEC
T ss_pred             cCHH-HHHhhhccCCEEEccCCCeec
Confidence            4443 455553 56666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.9e-28  Score=246.87  Aligned_cols=253  Identities=17%  Similarity=0.170  Sum_probs=213.5

Q ss_pred             cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEE
Q 003813          391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLN  470 (793)
Q Consensus       391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  470 (793)
                      ..++++++.+... |..      ..++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        14 ~~~~c~~~~l~~i-p~~------~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVG------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSSC-CTT------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCcccC-CcC------CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence            4566666665542 221      257899999999999988888999999999999999999988899999999999999


Q ss_pred             ccCCc-cccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813          471 LRNNR-LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL  549 (793)
Q Consensus       471 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  549 (793)
                      +++|. +....|..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            99997 8877789999999999999999999865555554 799999999999999977777799999999999999999


Q ss_pred             ccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccccc
Q 003813          550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ  629 (793)
Q Consensus       550 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  629 (793)
                      ++..+..+.++++                                            |+.|++++|++++..|..+.+++
T Consensus       166 ~~~~~~~~~~l~~--------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          166 SSVPERAFRGLHS--------------------------------------------LDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             CEECTTTTTTCTT--------------------------------------------CCEEECCSSCCCEECTTTTTTCT
T ss_pred             cccCHHHhcCccc--------------------------------------------cCEEECCCCcccccCHhHccCcc
Confidence            8655555655554                                            48899999999999999999999


Q ss_pred             CCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      +|++|++++|++++..++.+..+++|+.|++++|.+....+.. .-...++.+..+.+.+.|..|..
T Consensus       202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            9999999999999877778999999999999999998654421 12234566668889999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.6e-27  Score=249.28  Aligned_cols=205  Identities=17%  Similarity=0.267  Sum_probs=188.2

Q ss_pred             CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccC-------
Q 003813          414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNN-------  486 (793)
Q Consensus       414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------  486 (793)
                      .+++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            3789999999999999 88999999999999999999999 77889999999999999999988888877654       


Q ss_pred             --CCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCc
Q 003813          487 --FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA  564 (793)
Q Consensus       487 --l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  564 (793)
                        +++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..++++++| 
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L-  255 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL-  255 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC-
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC-
Confidence              999999999999998 8998876 79999999999999995 67789999999999999999999999888776665 


Q ss_pred             cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc
Q 003813          565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR  644 (793)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  644 (793)
                                                                 +.|+|++|++.+.+|..++++++|++|+|++|++.+.
T Consensus       256 -------------------------------------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          256 -------------------------------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             -------------------------------------------CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             -------------------------------------------CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence                                                       7899999999999999999999999999999999999


Q ss_pred             CCccccCcCCCCEEECCCCcCCC
Q 003813          645 IPDNIGVMRSIESLDFSANQLSG  667 (793)
Q Consensus       645 ~p~~l~~l~~L~~L~Ls~N~l~~  667 (793)
                      +|+.++++++|+.+++..|.+..
T Consensus       293 iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGGGSCC
T ss_pred             ccHHHhhccCceEEeCCHHHHHH
Confidence            99999999999999999887763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=6.2e-29  Score=258.67  Aligned_cols=208  Identities=21%  Similarity=0.307  Sum_probs=126.1

Q ss_pred             CCCccEEEccCCcccccCCCCc--cCCCCCCEEEccCCcccccCCCCCCCC-----CCccEEEccCCccccccCccccCC
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNNFTGSLPMSIGTL-----SSLMSLNLRNNRLSGIIPTSFNNF  487 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l  487 (793)
                      +++|++|++++|++++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..|.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4556666666666655555544  5555666666666666544 4444444     555555555555555555555555


Q ss_pred             CCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc--cCCCCcCEEEcccCccccccCccccccccCcc
Q 003813          488 TILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL--CRLASLQILDVAYNNLSGTIPRCINNFSAMAT  565 (793)
Q Consensus       488 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  565 (793)
                      ++|++|++++|++.+.++                       .|..+  ..+++|++|++++|++++. +..         
T Consensus       173 ~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---------  219 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERG-----------------------LISALCPLKFPTLQVLALRNAGMETP-SGV---------  219 (312)
T ss_dssp             SSCCEEECCSCTTCHHHH-----------------------HHHHSCTTSCTTCCEEECTTSCCCCH-HHH---------
T ss_pred             CCCCEEECCCCCcCcchH-----------------------HHHHHHhccCCCCCEEECCCCcCcch-HHH---------
Confidence            555555555555443211                       11122  4556666666666665421 100         


Q ss_pred             ccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCc-cccccccCCceeeccCCccccc
Q 003813          566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP-VEVTNLQGLQSLNFSYNLFTGR  644 (793)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~  644 (793)
                                                     .......++.|+.||+++|++++.+| ..+..+++|++|+|++|+++ .
T Consensus       220 -------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  267 (312)
T 1wwl_A          220 -------------------------------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q  267 (312)
T ss_dssp             -------------------------------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred             -------------------------------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence                                           00011123345667777777766554 34566788888888888888 7


Q ss_pred             CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      +|..+.  ++|+.|||++|++++. |. +..+++|++|++++|++++.
T Consensus       268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            777776  7888888888888866 65 88888888888888888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.4e-26  Score=251.38  Aligned_cols=252  Identities=19%  Similarity=0.205  Sum_probs=210.1

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD  116 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  116 (793)
                      ..+.++.++..++.+|..     -.+++++|+|++|+++.+++..|.++++|++|+|++|.+++..+.+|.++++|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG-----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcCccCCC-----CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            456788888888887653     236899999999999999888899999999999999999987788899999999999


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL  196 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  196 (793)
                      |++|.+++..+..|..+++|++|++++|.+. .++...|.++++|++|++++|+.+....+..+..+++|+.|++++|.+
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            9999999877778889999999999999988 677666889999999999987645555555788888999999988888


Q ss_pred             cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 003813          197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGT  276 (793)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  276 (793)
                      ++. | .+..+     ++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|+|++|+++ .
T Consensus       209 ~~~-~-~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  280 (452)
T 3zyi_A          209 KDM-P-NLTPL-----VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S  280 (452)
T ss_dssp             SSC-C-CCTTC-----TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-C
T ss_pred             ccc-c-ccccc-----ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-c
Confidence            753 3 23333     78999999999998888888999999999999999998888888889999999999999987 4


Q ss_pred             cChhhhhcCCCCcEEECCCCeeeeec
Q 003813          277 VSEIHFVNLTKLVTFRANGNSLIFKI  302 (793)
Q Consensus       277 ~~~~~~~~l~~L~~L~l~~n~l~~~~  302 (793)
                      ++...|..+++|+.|++++|++....
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             cChHHhccccCCCEEEccCCCcCCCC
Confidence            55557888889999999999886543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=250.95  Aligned_cols=252  Identities=19%  Similarity=0.223  Sum_probs=213.3

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD  116 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  116 (793)
                      ..+.++.++..++.+|..     -.+++++|+|++|+++.+++..|.++++|++|+|++|.+++..+.+|.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-----CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcCcCCCC-----CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence            456888888888887653     236889999999999999888899999999999999999987778899999999999


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL  196 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  196 (793)
                      |++|++++..+..|..+++|++|++++|.+. .++...|.++++|++|++++|+.+....+..|.++++|+.|++++|.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            9999999877778999999999999999988 666666899999999999987645555556788899999999999988


Q ss_pred             cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 003813          197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGT  276 (793)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  276 (793)
                      +. +|. +..+     ++|++|++++|++.+..|..|..+++|++|++++|++++..+..|.++++|++|+|++|+++ .
T Consensus       198 ~~-~~~-~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  269 (440)
T 3zyj_A          198 RE-IPN-LTPL-----IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L  269 (440)
T ss_dssp             SS-CCC-CTTC-----SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-C
T ss_pred             cc-ccc-cCCC-----cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-c
Confidence            74 332 3333     78999999999999888889999999999999999999888888999999999999999998 4


Q ss_pred             cChhhhhcCCCCcEEECCCCeeeeec
Q 003813          277 VSEIHFVNLTKLVTFRANGNSLIFKI  302 (793)
Q Consensus       277 ~~~~~~~~l~~L~~L~l~~n~l~~~~  302 (793)
                      ++...|..+++|+.|++++|++....
T Consensus       270 ~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          270 LPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             cChhHhccccCCCEEEcCCCCccCCC
Confidence            55557888999999999999886543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=4.2e-26  Score=233.17  Aligned_cols=211  Identities=19%  Similarity=0.202  Sum_probs=156.1

Q ss_pred             CCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEE
Q 003813          440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILN  519 (793)
Q Consensus       440 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  519 (793)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+. .+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence            3566777777776665555666666777777777776666666666677777777777776643333333 567777777


Q ss_pred             ccCccccccCCccccCCCCcCEEEcccCccccc-cCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchh
Q 003813          520 LRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT-IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLV  598 (793)
Q Consensus       520 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (793)
                      +++|++.+..+..+..+++|++|++++|++.+. +|..+.++++|                                   
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------------------------  151 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------------------------  151 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence            777777765555677777888888888877652 46666555444                                   


Q ss_pred             hhhhhccceeEEEcccCcceeeCccccccccCCc----eeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc
Q 003813          599 EYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ----SLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS  674 (793)
Q Consensus       599 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  674 (793)
                               +.|++++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+..|.
T Consensus       152 ---------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          152 ---------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             ---------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred             ---------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence                     6788888888877777787777777    899999999966665554 45899999999999988777889


Q ss_pred             CCCCCCeEEcccCcccccCCCC
Q 003813          675 NLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       675 ~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      .+++|++|++++|+++|.||.-
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccccccEEEccCCcccccCCch
Confidence            9999999999999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.4e-27  Score=244.57  Aligned_cols=220  Identities=18%  Similarity=0.180  Sum_probs=166.7

Q ss_pred             CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813          414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL  493 (793)
Q Consensus       414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  493 (793)
                      .+++|+.|++++|.+++..|..|.++++|++|++++|++++..+  +..+++|++|++++|++++..     ..++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            35678888888888887777788888888888888888886554  778888888888888887543     33788888


Q ss_pred             eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccc-ccccCccccCCCCC
Q 003813          494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN-NFSAMATTDSSDQS  572 (793)
Q Consensus       494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~  572 (793)
                      ++++|++++..+.    .+++|++|++++|++++..+..+..+++|++|++++|++++..|..+. .+            
T Consensus       105 ~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l------------  168 (317)
T 3o53_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------  168 (317)
T ss_dssp             ECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT------------
T ss_pred             ECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc------------
Confidence            8888888744332    357788888888888877777788888888888888888765554442 33            


Q ss_pred             CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813          573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM  652 (793)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  652 (793)
                                                      +.|+.|++++|++++. |. ...+++|++|+|++|++++ +|..+..+
T Consensus       169 --------------------------------~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  213 (317)
T 3o53_A          169 --------------------------------DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSA  213 (317)
T ss_dssp             --------------------------------TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred             --------------------------------CcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhccc
Confidence                                            3347788888888755 32 3347888888888888884 44457888


Q ss_pred             CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      ++|+.|++++|+++ .+|..+..+++|++|++++|+++|.
T Consensus       214 ~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence            88888888888887 4677778888888888888888743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.9e-28  Score=251.89  Aligned_cols=222  Identities=19%  Similarity=0.207  Sum_probs=174.0

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +++|+.|++++|.+++..+  +..+++|++|++++|++++..     ..++|++|++++|++++..+..   +++|++|+
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~  126 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIY  126 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEE
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEE
Confidence            6778888888888876554  777888888888888887433     2378888888888888765443   56788888


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCcccc-CCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC-RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN  573 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  573 (793)
                      +++|++++..|..+. .+++|++|++++|++++..+..+. .+++|++|++++|++++. |.. ..              
T Consensus       127 l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~--------------  189 (317)
T 3o53_A          127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VV--------------  189 (317)
T ss_dssp             CCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CC--------------
T ss_pred             CCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cc--------------
Confidence            888888754444444 678888888888888876666663 678899999999988743 211 11              


Q ss_pred             ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813          574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR  653 (793)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  653 (793)
                                                    ++.|+.|++++|++++. |..+..+++|++|++++|+++ .+|..+..++
T Consensus       190 ------------------------------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          190 ------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             ------------------------------cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence                                          33458899999999854 555999999999999999999 6788899999


Q ss_pred             CCCEEECCCCcCC-CCCcccccCCCCCCeEEcc-cCcccccCCC
Q 003813          654 SIESLDFSANQLS-GYIPQSMSNLSFLNYLNLS-NNNLNGEIPS  695 (793)
Q Consensus       654 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~  695 (793)
                      +|+.|++++|.++ +.+|..+..+++|+.++++ .+.++|..|.
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9999999999999 8889999999999999999 5567776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1e-27  Score=249.41  Aligned_cols=208  Identities=16%  Similarity=0.199  Sum_probs=147.2

Q ss_pred             cccEEEccCccCCCCCCcccccCCCCCeEEeecCccc-cccChhHH------hccccccEEEeeCccccccCCCCCCCCC
Q 003813          311 QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS-AKIPRRFW------NSIFQYWFLNISGNQMYGGVPKFDSPSM  383 (793)
Q Consensus       311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~~~  383 (793)
                      +|+.+++++|.+  .+|..+...  ++.|++++|++. ..+|....      ..+++|++|++++|++++.+|       
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------  112 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP-------  112 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-------
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-------
Confidence            455555555555  445444333  666677776663 33444332      135566666666666555444       


Q ss_pred             CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCC-----CCCCEEEccCCcccccCCC
Q 003813          384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNW-----PRLRMLNLRNNNFTGSLPM  458 (793)
Q Consensus       384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~  458 (793)
                                            ..+.  +..+++|+.|++++|.+++. |..+..+     ++|++|++++|++++..|.
T Consensus       113 ----------------------~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A          113 ----------------------PPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             ----------------------CCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             ----------------------HHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence                                  2211  13478999999999999987 8877776     9999999999999988889


Q ss_pred             CCCCCCCccEEEccCCccccc--cCccc--cCCCCCCEEeCCCCcccc--cCchhHHhhcccCcEEEccCccccccCC-c
Q 003813          459 SIGTLSSLMSLNLRNNRLSGI--IPTSF--NNFTILEALDMGENELVG--NIPTWMGERFSRLIILNLRSNKFHGDFP-I  531 (793)
Q Consensus       459 ~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~  531 (793)
                      .|..+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++  .++..++..+++|++|++++|++++..| .
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            999999999999999998765  23334  889999999999999972  3444555567888888888888887664 3


Q ss_pred             cccCCCCcCEEEcccCccccccCc
Q 003813          532 QLCRLASLQILDVAYNNLSGTIPR  555 (793)
Q Consensus       532 ~~~~l~~L~~L~Ls~N~l~~~~p~  555 (793)
                      .+..+++|++|++++|+++ .+|.
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~ip~  270 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QVPK  270 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SCCS
T ss_pred             hhhhcCCCCEEECCCCccC-hhhh
Confidence            4555677777777777776 4443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-26  Score=256.08  Aligned_cols=226  Identities=18%  Similarity=0.165  Sum_probs=190.0

Q ss_pred             hhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCC
Q 003813          408 ICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNF  487 (793)
Q Consensus       408 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  487 (793)
                      +......+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .
T Consensus        26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~   98 (487)
T 3oja_A           26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----G   98 (487)
T ss_dssp             HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----C
T ss_pred             HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----C
Confidence            33333345689999999999998888899999999999999999987666  8899999999999999986543     3


Q ss_pred             CCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccc-ccccCccc
Q 003813          488 TILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN-NFSAMATT  566 (793)
Q Consensus       488 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~  566 (793)
                      ++|+.|++++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .++.    
T Consensus        99 ~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~----  170 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----  170 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT----
T ss_pred             CCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc----
Confidence            8999999999999854443    468899999999999988888899999999999999999987776654 4444    


Q ss_pred             cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCC
Q 003813          567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP  646 (793)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  646 (793)
                                                              |+.|+|++|.+++..+  ...+++|+.|+|++|.+++. |
T Consensus       171 ----------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~  207 (487)
T 3oja_A          171 ----------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-G  207 (487)
T ss_dssp             ----------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-C
T ss_pred             ----------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-C
Confidence                                                    4889999999997633  34689999999999999964 4


Q ss_pred             ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      ..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            458999999999999999995 677899999999999999999843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.6e-25  Score=246.56  Aligned_cols=203  Identities=25%  Similarity=0.273  Sum_probs=132.4

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +++|+.|++++|.+++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+++|+.|+
T Consensus       100 l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~  167 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW  167 (622)
T ss_dssp             CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence            45666677776666643 33   35667777777777663 4432   36677777777776643 32   245677777


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND  574 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  574 (793)
                      +++|.++ .+|    ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..                  
T Consensus       168 L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------  219 (622)
T 3g06_A          168 AYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------  219 (622)
T ss_dssp             CCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred             CCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------
Confidence            7777776 455    135677777777777764 4432   356777777777765 23321                  


Q ss_pred             cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCC
Q 003813          575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS  654 (793)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  654 (793)
                                                   ++.|+.|++++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++
T Consensus       220 -----------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~  262 (622)
T 3g06_A          220 -----------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSG  262 (622)
T ss_dssp             -----------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             -----------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence                                         1234677777777774 55   34577778888888877 5665   4677


Q ss_pred             CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813          655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  695 (793)
                      |+.|+|++|+++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            788888888887 6677777888888888888888777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.1e-25  Score=248.25  Aligned_cols=188  Identities=26%  Similarity=0.358  Sum_probs=125.1

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++
T Consensus       121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L  188 (622)
T 3g06_A          121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV  188 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence            445555555555553 3332   3566666666666663 332   23566666676666664 33   34566777777


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      ++|.++ .+|.    .+++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|.   .                
T Consensus       189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~----------------  239 (622)
T 3g06_A          189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---L----------------  239 (622)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---C----------------
T ss_pred             CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---C----------------
Confidence            777766 3553    2456777777777776 34432   4677788888887764 441   1                


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI  655 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  655 (793)
                                                  ++.|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|..++++++|
T Consensus       240 ----------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          240 ----------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             ----------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             ----------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence                                        123477888888887 4555   5678899999999998 788889999999


Q ss_pred             CEEECCCCcCCCCCcccccCCC
Q 003813          656 ESLDFSANQLSGYIPQSMSNLS  677 (793)
Q Consensus       656 ~~L~Ls~N~l~~~~p~~l~~l~  677 (793)
                      +.|+|++|.+++.+|..+..++
T Consensus       287 ~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHHhcc
Confidence            9999999999988888777655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.1e-26  Score=254.06  Aligned_cols=243  Identities=20%  Similarity=0.196  Sum_probs=198.3

Q ss_pred             CCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccE
Q 003813          389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMS  468 (793)
Q Consensus       389 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  468 (793)
                      .++.+++++|.+.+..|..    +..+++|+.|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            3445555555555544433    3448999999999999998766  8899999999999999986443     389999


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCcccc-CCCCcCEEEcccC
Q 003813          469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC-RLASLQILDVAYN  547 (793)
Q Consensus       469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N  547 (793)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..|..+. .+++|+.|+|++|
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            99999999987664   458899999999999976676665 799999999999999998888876 7999999999999


Q ss_pred             ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813          548 NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN  627 (793)
Q Consensus       548 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  627 (793)
                      .+++..+.  ..                                            ++.|+.|+|++|.+++.+| .+..
T Consensus       180 ~l~~~~~~--~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~-~~~~  212 (487)
T 3oja_A          180 FIYDVKGQ--VV--------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQS  212 (487)
T ss_dssp             CCCEEECC--CC--------------------------------------------CTTCCEEECCSSCCCEECG-GGGG
T ss_pred             cccccccc--cc--------------------------------------------CCCCCEEECCCCCCCCCCH-hHcC
Confidence            99865221  12                                            3446899999999997555 5999


Q ss_pred             ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCC-CCCcccccCCCCCCeEEcc-------cCcccccCC
Q 003813          628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS-GYIPQSMSNLSFLNYLNLS-------NNNLNGEIP  694 (793)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~g~ip  694 (793)
                      +++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++       .|+..|.+|
T Consensus       213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            9999999999999995 7888999999999999999998 7788899999999999987       555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=5e-25  Score=224.04  Aligned_cols=207  Identities=19%  Similarity=0.242  Sum_probs=135.0

Q ss_pred             CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813          417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG  496 (793)
Q Consensus       417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  496 (793)
                      ..+.++++++.++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|.++++.+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            34555555555552 343332  345555555555554444455555555555555555554444444445555555555


Q ss_pred             CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                      +|++                         ++..+..+..+++|++|++++|++++..|..+.++++|             
T Consensus        94 ~n~l-------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------  135 (270)
T 2o6q_A           94 DNKL-------------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------  135 (270)
T ss_dssp             SSCC-------------------------CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcC-------------------------CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-------------
Confidence            5544                         43333344555555555555555554444333333332             


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE  656 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  656 (793)
                                                     +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+
T Consensus       136 -------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             -------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence                                           5566666666655555688899999999999999977777899999999


Q ss_pred             EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813          657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  695 (793)
                      .|++++|++++..+..|..+++|++|++++|++.|.++.
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            999999999988778899999999999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.3e-27  Score=273.47  Aligned_cols=310  Identities=16%  Similarity=0.102  Sum_probs=153.0

Q ss_pred             cCCCCcccEEEcCCccCCC-C---C-c-------h-hHhhCCCCCccEEEccCCCCCCCCCccCC-CCCCCCEEECcCc-
Q 003813           32 LSGLSLLKHLYISSVNLSK-A---S-D-------S-LLVINSLPSLKELKLSFCKLHHFPPLSSA-NFSSLTTLDLSEN-   96 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~-~---~-~-------~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n-   96 (793)
                      +..+++|++|+++++.... .   + .       + ......+++|++|++++|.++......+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            4567778888887764211 1   0 0       0 11123567777777777776654433343 4677777777777 


Q ss_pred             cCCCc-ccccccCCCCCCEEeCcCCcCccCCccccc----CCCCCCEEEccCCccccccChhh----hcCCCCCcEEEcC
Q 003813           97 EFQGQ-IPSRLGNLTSLKYLDLSFNQFNSVVPGWLS----KLNDLEFLSLQSNRLQGNISSLG----LENLTSIQTLLLS  167 (793)
Q Consensus        97 ~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~i~~~~----~~~l~~L~~L~L~  167 (793)
                      .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++++|.  +.+....    ..++++|++|+++
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence            44322 333344677777777777776654433332    55677777777775  1222221    2345777777777


Q ss_pred             CCCCCCCCCcccccCCCCCcEEEccCCcc-------cccchhHHhhhccccCCCccEE-EccCcccccccccccCCCCCC
Q 003813          168 GNDELGGKIPTSFGRFCKLKSFSTGFTNL-------SQDISEILGIFSACVANELESL-DLGSCQIFGHMTNQLGRFKGL  239 (793)
Q Consensus       168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l-------~~~~~~~~~~~~~~~~~~L~~L-~L~~n~~~~~~~~~l~~l~~L  239 (793)
                      +|..+.+ ++..+..+++|+.|+++.+..       .+ ++..+..+     ++|+.+ .+.+.. .+.++..+..+++|
T Consensus       220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~-----~~L~~Ls~~~~~~-~~~l~~~~~~~~~L  291 (594)
T 2p1m_B          220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGC-----KELRCLSGFWDAV-PAYLPAVYSVCSRL  291 (594)
T ss_dssp             TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTC-----TTCCEEECCBTCC-GGGGGGGHHHHTTC
T ss_pred             CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcC-----CCcccccCCcccc-hhhHHHHHHhhCCC
Confidence            7642323 555666666666666544321       11 22233333     555555 222221 12233333344555


Q ss_pred             CEEeCcCCcCCCCcch-hhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEcc
Q 003813          240 NFLDLSNTTMDGSIPL-SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR  318 (793)
Q Consensus       240 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  318 (793)
                      ++|++++|.+++.... .+..+++|++|++++| +...........+++|++|++.++.-.+               ...
T Consensus       292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~  355 (594)
T 2p1m_B          292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEP  355 (594)
T ss_dssp             CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSC
T ss_pred             CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------ccc
Confidence            5555555554432211 2335555555555555 2211111122234555555543221000               000


Q ss_pred             CccCCCCCCcc-cccCCCCCeEEeecCccccccChhHHhccccccEEEee
Q 003813          319 SCRLGPRFPLW-LQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNIS  367 (793)
Q Consensus       319 ~~~~~~~~~~~-l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls  367 (793)
                      .+.++...... ...+++|++|.+..+.+++.....+...+++|+.|+++
T Consensus       356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            11111111111 12356677776666666655555555455666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.1e-27  Score=271.72  Aligned_cols=158  Identities=13%  Similarity=0.055  Sum_probs=86.5

Q ss_pred             CCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc--C----cccccc-----CCccccCCCCcCEEEcccCccccccCc
Q 003813          487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLR--S----NKFHGD-----FPIQLCRLASLQILDVAYNNLSGTIPR  555 (793)
Q Consensus       487 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (793)
                      +++|+.|+++.|.+++..+..+...+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            56666666666666655444454456666666666  2    333311     111244556666666655 44322221


Q ss_pred             cccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccc-ccccCCcee
Q 003813          556 CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSL  634 (793)
Q Consensus       556 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L  634 (793)
                      .+..                                           .++.|+.|+|++|.+++..+..+ ..+++|++|
T Consensus       450 ~l~~-------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  486 (594)
T 2p1m_B          450 YIGT-------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL  486 (594)
T ss_dssp             HHHH-------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred             HHHH-------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence            1111                                           13445677777777765444444 557777777


Q ss_pred             eccCCcccccCCc-cccCcCCCCEEECCCCcCCCCCcccc-cCCCCCCeEEcccCc
Q 003813          635 NFSYNLFTGRIPD-NIGVMRSIESLDFSANQLSGYIPQSM-SNLSFLNYLNLSNNN  688 (793)
Q Consensus       635 ~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~  688 (793)
                      +|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            7777777644433 33446777777777777753333333 345666555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.5e-24  Score=222.27  Aligned_cols=207  Identities=20%  Similarity=0.256  Sum_probs=161.5

Q ss_pred             ccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccC
Q 003813          436 WMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRL  515 (793)
Q Consensus       436 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  515 (793)
                      +.++++++++++++|.++ .+|..+.  ++++.|++++|.+++..+..|.++++|+.|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            455667777777777776 4554443  56777777777777776777777777777777777776 34433  257778


Q ss_pred             cEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhcc
Q 003813          516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG  595 (793)
Q Consensus       516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (793)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            88888888887 667777788888888888888876655666655544                                


Q ss_pred             chhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccC
Q 003813          596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN  675 (793)
Q Consensus       596 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  675 (793)
                                  +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus       127 ------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          127 ------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             ------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence                        77888888888777777889999999999999999666667889999999999999998 77888888


Q ss_pred             CCCCCeEEcccCcccccCC
Q 003813          676 LSFLNYLNLSNNNLNGEIP  694 (793)
Q Consensus       676 l~~L~~L~ls~N~l~g~ip  694 (793)
                      +++|+.+++++|++.|.|.
T Consensus       194 ~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TCCCSEEECCSCCBCCSGG
T ss_pred             cccCCeEEeCCCCccCcCc
Confidence            8999999999999998874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.3e-24  Score=220.29  Aligned_cols=213  Identities=19%  Similarity=0.207  Sum_probs=184.7

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      .+++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            36799999999999988888999999999999999999988888999999999999999999999889999999999999


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCcccccc-CCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGD-FPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN  573 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  573 (793)
                      +++|.+.+..+..+. .+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..++.        
T Consensus       107 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------  177 (276)
T 2z62_A          107 AVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------  177 (276)
T ss_dssp             CTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT--------
T ss_pred             CCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc--------
Confidence            999999854443444 799999999999999864 6899999999999999999999777767766655532        


Q ss_pred             ccccccCCccchhhhhhhhhccchhhhhhhcccee-EEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813          574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR-GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM  652 (793)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  652 (793)
                                                       +. .|++++|++++..+..+. ..+|++|++++|++++..+..|+.+
T Consensus       178 ---------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          178 ---------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             ---------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             ---------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence                                             22 799999999976665555 4589999999999997777778999


Q ss_pred             CCCCEEECCCCcCCCCCc
Q 003813          653 RSIESLDFSANQLSGYIP  670 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p  670 (793)
                      ++|+.|++++|.+++..|
T Consensus       224 ~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCEEECCSSCBCCCTT
T ss_pred             ccccEEEccCCcccccCC
Confidence            999999999999996543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.2e-23  Score=211.97  Aligned_cols=205  Identities=20%  Similarity=0.247  Sum_probs=159.5

Q ss_pred             CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCcc
Q 003813          388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLM  467 (793)
Q Consensus       388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  467 (793)
                      ...+.++++++.++. +|..+      .++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCCEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            457899999999986 45332      36899999999999988888999999999999999999977777789999999


Q ss_pred             EEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccC
Q 003813          468 SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYN  547 (793)
Q Consensus       468 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  547 (793)
                      +|++++|++++..+..|.++++|++|++++|++++ ++...+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            99999999998888888888899999998888873 44333335667777777777666544444555666666666555


Q ss_pred             ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813          548 NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN  627 (793)
Q Consensus       548 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  627 (793)
                      +++                                                                    +..+..|.+
T Consensus       168 ~l~--------------------------------------------------------------------~~~~~~~~~  179 (270)
T 2o6q_A          168 QLK--------------------------------------------------------------------RVPEGAFDK  179 (270)
T ss_dssp             CCS--------------------------------------------------------------------CCCTTTTTT
T ss_pred             cCc--------------------------------------------------------------------EeChhHhcc
Confidence            554                                                                    334445677


Q ss_pred             ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCC
Q 003813          628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY  668 (793)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  668 (793)
                      +++|++|++++|++++..+..|..+++|+.|++++|.+...
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            78888888888888866666788888888888888887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.1e-25  Score=242.06  Aligned_cols=243  Identities=14%  Similarity=0.204  Sum_probs=193.6

Q ss_pred             hhcccCCCCCccEEEccCCcccccC----CCCccCCCCCCEEEccCC---cccccCCCCC-------CCCCCccEEEccC
Q 003813          408 ICQGENFSKNIEFFQLSKNHFSGEI----PDCWMNWPRLRMLNLRNN---NFTGSLPMSI-------GTLSSLMSLNLRN  473 (793)
Q Consensus       408 ~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~L~~  473 (793)
                      +...+..+++|+.|++++|.+++..    +..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3344445788999999999988763    345778999999999996   4455556554       6789999999999


Q ss_pred             Ccccc----ccCccccCCCCCCEEeCCCCcccccCchhHHh---hc---------ccCcEEEccCcccc-ccCC---ccc
Q 003813          474 NRLSG----IIPTSFNNFTILEALDMGENELVGNIPTWMGE---RF---------SRLIILNLRSNKFH-GDFP---IQL  533 (793)
Q Consensus       474 n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~~  533 (793)
                      |.+.+    .+|..+..+++|++|+|++|.+++..+..+..   .+         ++|++|++++|+++ +.+|   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99987    46778889999999999999987544444432   23         89999999999997 4444   467


Q ss_pred             cCCCCcCEEEcccCcccc-----ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhcccee
Q 003813          534 CRLASLQILDVAYNNLSG-----TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR  608 (793)
Q Consensus       534 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  608 (793)
                      ..+++|++|++++|+++.     ..|..+..                                            ++.|+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------------------------------------------~~~L~  219 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------------------------------------------CQELK  219 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------------------------------------------CTTCC
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------------------------------------------CCCcc
Confidence            788999999999999862     12223333                                            44568


Q ss_pred             EEEcccCcce----eeCccccccccCCceeeccCCccccc----CCcccc--CcCCCCEEECCCCcCCC----CCcccc-
Q 003813          609 GIDISKNNFS----GEVPVEVTNLQGLQSLNFSYNLFTGR----IPDNIG--VMRSIESLDFSANQLSG----YIPQSM-  673 (793)
Q Consensus       609 ~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-  673 (793)
                      .|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            9999999996    67888999999999999999999976    567774  48999999999999998    488877 


Q ss_pred             cCCCCCCeEEcccCcccccCC
Q 003813          674 SNLSFLNYLNLSNNNLNGEIP  694 (793)
Q Consensus       674 ~~l~~L~~L~ls~N~l~g~ip  694 (793)
                      .++++|++|++++|++++..|
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTSH
T ss_pred             hcCCCceEEEccCCcCCcchh
Confidence            678999999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=7.1e-24  Score=215.70  Aligned_cols=203  Identities=19%  Similarity=0.219  Sum_probs=137.8

Q ss_pred             CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcE
Q 003813          438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLII  517 (793)
Q Consensus       438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~  517 (793)
                      .+++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++ ++...+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCE
Confidence            44555556666555542 1 2355556666666666665542  245566666666666666653 33332235666666


Q ss_pred             EEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccch
Q 003813          518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL  597 (793)
Q Consensus       518 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (793)
                      |++++|++++..+..+..+++|++|++++|++++..+..+.++++|                                  
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------------------  159 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL----------------------------------  159 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC----------------------------------
Confidence            6666666665555556667777777777777765444444444433                                  


Q ss_pred             hhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCC
Q 003813          598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS  677 (793)
Q Consensus       598 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  677 (793)
                                +.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|.+.+.       ++
T Consensus       160 ----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~  222 (272)
T 3rfs_A          160 ----------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP  222 (272)
T ss_dssp             ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred             ----------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence                      6677777777766666778899999999999999988888889999999999999988865       44


Q ss_pred             CCCeEEcccCcccccCCCC
Q 003813          678 FLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       678 ~L~~L~ls~N~l~g~ip~~  696 (793)
                      .|++++++.|.++|.+|..
T Consensus       223 ~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHHhCCCcccCc
Confidence            6889999999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.5e-23  Score=213.31  Aligned_cols=209  Identities=25%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL  112 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  112 (793)
                      ..+++|+.|++++|.++.++.    +..+++|++|++++|.+++++  .+..+++|++|++++|.+++..+..|.++++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccceeeeeeCCCCcccccc----cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            344455555555555444322    334455555555555554432  34455555555555555554444444555555


Q ss_pred             CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813          113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG  192 (793)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~  192 (793)
                      ++|++++|++++..+..|+.+++|++|++++|.++ .++...++++++|++|++++|. +++..+..+..+++|+.|+++
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence            55555555555444444455555555555555554 3333334455555555555554 444444444555555555555


Q ss_pred             CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCC
Q 003813          193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIA  261 (793)
Q Consensus       193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  261 (793)
                      .|.+++..+..+..+     ++|++|++++|.+.+       .+++|+.++++.|.++|.+|.+++.++
T Consensus       190 ~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          190 QNQLKSVPDGVFDRL-----TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SSCCSCCCTTTTTTC-----TTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCcCCccCHHHHhCC-----cCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            555554444444444     566666666665532       344566666777777776666665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=4.5e-25  Score=234.66  Aligned_cols=257  Identities=17%  Similarity=0.205  Sum_probs=184.2

Q ss_pred             EEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC----CCccCCC-CCCEEEccCCcccccCCCCCCCC----
Q 003813          393 FDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP----DCWMNWP-RLRMLNLRNNNFTGSLPMSIGTL----  463 (793)
Q Consensus       393 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l----  463 (793)
                      ++++.|.++|.+|.....    .++|+.|++++|.+++..+    ..|.+++ +|++|+|++|++++..+..+..+    
T Consensus         3 ~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            456667777766654432    5668889999988887666    6777788 89999999998887766666654    


Q ss_pred             -CCccEEEccCCccccccCcc----ccCC-CCCCEEeCCCCcccccCchhHHhh----cccCcEEEccCccccccC----
Q 003813          464 -SSLMSLNLRNNRLSGIIPTS----FNNF-TILEALDMGENELVGNIPTWMGER----FSRLIILNLRSNKFHGDF----  529 (793)
Q Consensus       464 -~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~----  529 (793)
                       ++|++|++++|++++..+..    +..+ ++|++|++++|++++..+..+...    .++|++|+|++|++++..    
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             88999999999888766654    3444 789999999998876555444322    358999999999888543    


Q ss_pred             CccccCCC-CcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhc-cce
Q 003813          530 PIQLCRLA-SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSIL-NLV  607 (793)
Q Consensus       530 p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L  607 (793)
                      +..+..++ +|++|+|++|++++..+..+...                                        .... +.|
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~~~~~L  198 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LASIPASV  198 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHTSCTTC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHhCCCCC
Confidence            33445555 89999999998876555433221                                        1112 356


Q ss_pred             eEEEcccCcceee----Cccccccc-cCCceeeccCCcccccCC----ccccCcCCCCEEECCCCcCCCCCc-------c
Q 003813          608 RGIDISKNNFSGE----VPVEVTNL-QGLQSLNFSYNLFTGRIP----DNIGVMRSIESLDFSANQLSGYIP-------Q  671 (793)
Q Consensus       608 ~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p-------~  671 (793)
                      +.|||++|.+++.    ++..+..+ ++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..+       .
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence            8899999998853    45555553 589999999999986544    345667889999999998654443       3


Q ss_pred             cccCCCCCCeEEcccCcccccC
Q 003813          672 SMSNLSFLNYLNLSNNNLNGEI  693 (793)
Q Consensus       672 ~l~~l~~L~~L~ls~N~l~g~i  693 (793)
                      .+..+++|+.||+++|++.+..
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCGGG
T ss_pred             HhccCCceEEEecCCCcCCCcc
Confidence            5677888999999999987663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.3e-23  Score=210.69  Aligned_cols=202  Identities=18%  Similarity=0.175  Sum_probs=174.3

Q ss_pred             CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813          414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL  493 (793)
Q Consensus       414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  493 (793)
                      .+++++.+++++|.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            36789999999999984 555443  6899999999999988888899999999999999999976543  789999999


Q ss_pred             eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813          494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN  573 (793)
Q Consensus       494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  573 (793)
                      ++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++           
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------  149 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----------  149 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-----------
Confidence            99999998 7887665 7899999999999999777788999999999999999998665555555444           


Q ss_pred             ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813          574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR  653 (793)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  653 (793)
                                                       |+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.
T Consensus       150 ---------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          150 ---------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             ---------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ---------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence                                             488999999999766667889999999999999999 8888899999


Q ss_pred             CCCEEECCCCcCCC
Q 003813          654 SIESLDFSANQLSG  667 (793)
Q Consensus       654 ~L~~L~Ls~N~l~~  667 (793)
                      +|+.|+|++|.+..
T Consensus       196 ~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          196 LLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSEEECCSCCBCC
T ss_pred             cCCeEEeCCCCccC
Confidence            99999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.6e-23  Score=206.28  Aligned_cols=196  Identities=17%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             CCCEEEccCCcccccCCCCCCCCCCccEEEccCCc-cccccCccccCCCCCCEEeCCC-CcccccCchhHHhhcccCcEE
Q 003813          441 RLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR-LSGIIPTSFNNFTILEALDMGE-NELVGNIPTWMGERFSRLIIL  518 (793)
Q Consensus       441 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~L~~L  518 (793)
                      +|++|++++|++++..+..|.++++|++|++++|+ ++++.+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            55556666665555555455555566666666654 5555455555555666666655 5555 3333322345556666


Q ss_pred             EccCccccccCCccccCCCCcC---EEEcccC-ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhc
Q 003813          519 NLRSNKFHGDFPIQLCRLASLQ---ILDVAYN-NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK  594 (793)
Q Consensus       519 ~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (793)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+..+.+++.|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            666665553 443 55555555   6666666 5554333344443333                               


Q ss_pred             cchhhhhhhcccee-EEEcccCcceeeCccccccccCCceeeccCCc-ccccCCccccCc-CCCCEEECCCCcCCCCCcc
Q 003813          595 GFLVEYKSILNLVR-GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL-FTGRIPDNIGVM-RSIESLDFSANQLSGYIPQ  671 (793)
Q Consensus       595 ~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~  671 (793)
                                   + .|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++. |.
T Consensus       158 -------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~  222 (239)
T 2xwt_C          158 -------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS  222 (239)
T ss_dssp             -------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC
T ss_pred             -------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch
Confidence                         5 5666666666322333333 667777777774 765556667777 7777777777777643 33


Q ss_pred             cccCCCCCCeEEcccC
Q 003813          672 SMSNLSFLNYLNLSNN  687 (793)
Q Consensus       672 ~l~~l~~L~~L~ls~N  687 (793)
                      .  .+++|+.|+++++
T Consensus       223 ~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          223 K--GLEHLKELIARNT  236 (239)
T ss_dssp             T--TCTTCSEEECTTC
T ss_pred             h--HhccCceeeccCc
Confidence            2  4566777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=218.56  Aligned_cols=209  Identities=19%  Similarity=0.239  Sum_probs=129.6

Q ss_pred             CCccEEEccCCcccccCCCCc--cCCCCCCEEEccCCcccccCC----CCCCCCCCccEEEccCCccccccCccccCCCC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNNFTGSLP----MSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI  489 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  489 (793)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..|.++++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            456777777777766666666  666677777777777665433    22334666666666666666666666666666


Q ss_pred             CCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813          490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS  569 (793)
Q Consensus       490 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  569 (793)
                      |++|++++|++.+....                     ..+..+..+++|++|++++|+++. +|.....          
T Consensus       171 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~----------  218 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGMET-PTGVCAA----------  218 (310)
T ss_dssp             CCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH----------
T ss_pred             CCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH----------
Confidence            66666666665421000                     001122345566666666666541 1211000          


Q ss_pred             CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc---cCCceeeccCCcccccCC
Q 003813          570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL---QGLQSLNFSYNLFTGRIP  646 (793)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p  646 (793)
                                                    ....++.|+.|||++|++++.+|..+..+   ++|++|+|++|+++ .+|
T Consensus       219 ------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          219 ------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             ------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred             ------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence                                          00112334666777777766666666665   58888888888888 677


Q ss_pred             ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813          647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  691 (793)
                      ..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       268 ~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             hhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            7765  7888888888888864 33 6778888889999888864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=217.94  Aligned_cols=200  Identities=19%  Similarity=0.217  Sum_probs=150.9

Q ss_pred             CCccEEEccCCccccccCccc--cCCCCCCEEeCCCCcccccCc----hhHHhhcccCcEEEccCccccccCCccccCCC
Q 003813          464 SSLMSLNLRNNRLSGIIPTSF--NNFTILEALDMGENELVGNIP----TWMGERFSRLIILNLRSNKFHGDFPIQLCRLA  537 (793)
Q Consensus       464 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  537 (793)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|++.+..+    ..+. .+++|++|++++|++.+..|..+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence            456666666666666666665  666677777777776665444    2223 588999999999999988888999999


Q ss_pred             CcCEEEcccCccccc--cC--ccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcc
Q 003813          538 SLQILDVAYNNLSGT--IP--RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDIS  613 (793)
Q Consensus       538 ~L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  613 (793)
                      +|++|++++|++.+.  ++  .++..+                                            +.|++|+|+
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l--------------------------------------------~~L~~L~Ls  205 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKF--------------------------------------------PAIQNLALR  205 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSS--------------------------------------------CCCCSCBCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcC--------------------------------------------CCCCEEECC
Confidence            999999999998653  21  222333                                            345889999


Q ss_pred             cCcceeeCcc----ccccccCCceeeccCCcccccCCccccCc---CCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          614 KNNFSGEVPV----EVTNLQGLQSLNFSYNLFTGRIPDNIGVM---RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       614 ~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      +|+++ .+|.    .++.+++|++|||++|++++.+|+.++.+   ++|++|+|++|+++ .+|..+.  ++|++||+++
T Consensus       206 ~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~  281 (310)
T 4glp_A          206 NTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS  281 (310)
T ss_dssp             SSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred             CCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence            99997 3333    35788999999999999998889888887   69999999999999 6787764  8999999999


Q ss_pred             CcccccCCCCCccCCcCCccccCCCcc
Q 003813          687 NNLNGEIPSSTQLQSFGGSSFADNDLC  713 (793)
Q Consensus       687 N~l~g~ip~~~~~~~~~~~~~~~n~l~  713 (793)
                      |++++. |....+..+....+.+|.+.
T Consensus       282 N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          282 NRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CcCCCC-chhhhCCCccEEECcCCCCC
Confidence            999973 33334555666666777554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=8.5e-23  Score=205.09  Aligned_cols=183  Identities=17%  Similarity=0.208  Sum_probs=129.8

Q ss_pred             CCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEE
Q 003813          440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILN  519 (793)
Q Consensus       440 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  519 (793)
                      .+.++++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+. .+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEE
Confidence            34667788888777 5565544  5777777777777777666677777777777777766633332222 455555555


Q ss_pred             ccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhh
Q 003813          520 LRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVE  599 (793)
Q Consensus       520 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (793)
                      +++|++++..+..+..+++|+                                                           
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~-----------------------------------------------------------  110 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLD-----------------------------------------------------------  110 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCC-----------------------------------------------------------
T ss_pred             CCCCcccccChhHhcccCCCC-----------------------------------------------------------
Confidence            555555544444444444444                                                           


Q ss_pred             hhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCC
Q 003813          600 YKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFL  679 (793)
Q Consensus       600 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  679 (793)
                               .|+|++|++++..+..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+++|
T Consensus       111 ---------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          111 ---------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             ---------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ---------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence                     45555555554455567788899999999999997777789999999999999999998888889999999


Q ss_pred             CeEEcccCcccccCC
Q 003813          680 NYLNLSNNNLNGEIP  694 (793)
Q Consensus       680 ~~L~ls~N~l~g~ip  694 (793)
                      ++|++++|+++|.++
T Consensus       182 ~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          182 QTITLFGNQFDCSRC  196 (251)
T ss_dssp             CEEECCSCCBCTTST
T ss_pred             CEEEeeCCceeCCcc
Confidence            999999999998844

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.3e-23  Score=221.72  Aligned_cols=252  Identities=17%  Similarity=0.212  Sum_probs=185.8

Q ss_pred             CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc-CCCCCCCCCCccE
Q 003813          390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS-LPMSIGTLSSLMS  468 (793)
Q Consensus       390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  468 (793)
                      .+.++++++.+.......+.     .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~-----~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHH-----HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCCHHHHHhhh-----hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            45666666665532111110     16788999999998877665 45688999999999988765 6777888899999


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCC-ccccc-CchhHHhhcccCcEEEccCc-ccccc-CCccccCCC-CcCEEE
Q 003813          469 LNLRNNRLSGIIPTSFNNFTILEALDMGEN-ELVGN-IPTWMGERFSRLIILNLRSN-KFHGD-FPIQLCRLA-SLQILD  543 (793)
Q Consensus       469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~  543 (793)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            999999988888888888999999999999 67653 555444 7889999999999 88754 566677888 999999


Q ss_pred             cccCc--cc-cccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-cee
Q 003813          544 VAYNN--LS-GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSG  619 (793)
Q Consensus       544 Ls~N~--l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~  619 (793)
                      +++|.  ++ +.+|..+.+                                            ++.|+.|++++|. +++
T Consensus       202 l~~~~~~~~~~~l~~~~~~--------------------------------------------~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRR--------------------------------------------CPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHH--------------------------------------------CTTCSEEECTTCTTCCG
T ss_pred             eCCCcccCCHHHHHHHHhh--------------------------------------------CCCCCEEeCCCCCcCCH
Confidence            99984  43 233333333                                            4456889999998 777


Q ss_pred             eCccccccccCCceeeccCCc-ccccCCccccCcCCCCEEECCCCcCCCCCcccccCC-CCCCeEEcccCcccccCCCC
Q 003813          620 EVPVEVTNLQGLQSLNFSYNL-FTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       620 ~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ..+..+..+++|++|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..+..|++++|++++..|..
T Consensus       238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            778888999999999999995 33222236788999999999998 432   234444 24777788999999888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.9e-22  Score=199.75  Aligned_cols=199  Identities=16%  Similarity=0.185  Sum_probs=172.2

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCc-ccccCCCCCCCCCCccEEEccC-CccccccCccccCCCCCCE
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN-FTGSLPMSIGTLSSLMSLNLRN-NRLSGIIPTSFNNFTILEA  492 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~  492 (793)
                      .++++.|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3589999999999998888899999999999999997 8877777899999999999999 9999888889999999999


Q ss_pred             EeCCCCcccccCchhHHhhcccCc---EEEccCc-cccccCCccccCCCCcC-EEEcccCccccccCccccccccCcccc
Q 003813          493 LDMGENELVGNIPTWMGERFSRLI---ILNLRSN-KFHGDFPIQLCRLASLQ-ILDVAYNNLSGTIPRCINNFSAMATTD  567 (793)
Q Consensus       493 L~L~~N~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~  567 (793)
                      |++++|+++ .+|. + ..+++|+   +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......       
T Consensus       110 L~l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-------  178 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-------  178 (239)
T ss_dssp             EEEEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-------
T ss_pred             EeCCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-------
Confidence            999999998 4887 3 3688888   9999999 99977777899999999 9999999998 555432111       


Q ss_pred             CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-ceeeCccccccc-cCCceeeccCCcccccC
Q 003813          568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSGEVPVEVTNL-QGLQSLNFSYNLFTGRI  645 (793)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~  645 (793)
                                                           +.|+.|++++|+ +++..+..|.++ ++|++|++++|+++ .+
T Consensus       179 -------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l  220 (239)
T 2xwt_C          179 -------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL  220 (239)
T ss_dssp             -------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CC
T ss_pred             -------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cC
Confidence                                                 346899999995 997778889999 99999999999999 55


Q ss_pred             CccccCcCCCCEEECCCCc
Q 003813          646 PDNIGVMRSIESLDFSANQ  664 (793)
Q Consensus       646 p~~l~~l~~L~~L~Ls~N~  664 (793)
                      |..  .+++|+.|+++++.
T Consensus       221 ~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCT--TCTTCSEEECTTC-
T ss_pred             Chh--HhccCceeeccCcc
Confidence            554  67899999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=9.1e-24  Score=227.09  Aligned_cols=237  Identities=20%  Similarity=0.267  Sum_probs=182.9

Q ss_pred             CcEEEcccCcccccccchhhcccCCCCCccEEEccCC---cccccCCCCc-------cCCCCCCEEEccCCcccc----c
Q 003813          390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKN---HFSGEIPDCW-------MNWPRLRMLNLRNNNFTG----S  455 (793)
Q Consensus       390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~----~  455 (793)
                      ++.+++++|.+.+..+..++..+..+++|+.|+|++|   ++++.+|..+       ..+++|++|+|++|.+++    .
T Consensus        34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  113 (386)
T 2ca6_A           34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP  113 (386)
T ss_dssp             CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred             ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence            4444455555555545555556667899999999986   4555555544       688999999999999986    4


Q ss_pred             CCCCCCCCCCccEEEccCCccccccCcccc----CC---------CCCCEEeCCCCccc-ccCch--hHHhhcccCcEEE
Q 003813          456 LPMSIGTLSSLMSLNLRNNRLSGIIPTSFN----NF---------TILEALDMGENELV-GNIPT--WMGERFSRLIILN  519 (793)
Q Consensus       456 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~N~l~-~~~p~--~~~~~l~~L~~L~  519 (793)
                      +|..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|+++ +.+|.  ..+..+++|++|+
T Consensus       114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  193 (386)
T 2ca6_A          114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK  193 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence            666788899999999999999755444443    34         89999999999997 44553  1223688999999


Q ss_pred             ccCcccc--c---cCCccccCCCCcCEEEcccCccc----cccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813          520 LRSNKFH--G---DFPIQLCRLASLQILDVAYNNLS----GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL  590 (793)
Q Consensus       520 L~~n~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (793)
                      +++|++.  |   ..|..+..+++|+.|+|++|.++    +.+|..+..++                             
T Consensus       194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-----------------------------  244 (386)
T 2ca6_A          194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----------------------------  244 (386)
T ss_dssp             CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----------------------------
T ss_pred             CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----------------------------
Confidence            9999998  3   34447889999999999999996    44555554444                             


Q ss_pred             hhhccchhhhhhhccceeEEEcccCcceee----Cccccc--cccCCceeeccCCcccc----cCCccc-cCcCCCCEEE
Q 003813          591 LVMKGFLVEYKSILNLVRGIDISKNNFSGE----VPVEVT--NLQGLQSLNFSYNLFTG----RIPDNI-GVMRSIESLD  659 (793)
Q Consensus       591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~  659 (793)
                                     .|+.|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++|+.|+
T Consensus       245 ---------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          245 ---------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             ---------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ---------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                           458999999999876    566664  48999999999999997    488887 6789999999


Q ss_pred             CCCCcCCCCCc
Q 003813          660 FSANQLSGYIP  670 (793)
Q Consensus       660 Ls~N~l~~~~p  670 (793)
                      +++|++++..|
T Consensus       310 l~~N~l~~~~~  320 (386)
T 2ca6_A          310 LNGNRFSEEDD  320 (386)
T ss_dssp             CTTSBSCTTSH
T ss_pred             ccCCcCCcchh
Confidence            99999998774

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.8e-22  Score=206.59  Aligned_cols=194  Identities=22%  Similarity=0.391  Sum_probs=137.4

Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCc
Q 003813          437 MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLI  516 (793)
Q Consensus       437 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  516 (793)
                      ..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|+++ .++ .+. .+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCC
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCC
Confidence            345566677777766663 33 46666777777777777665443  666777777777777766 344 233 567777


Q ss_pred             EEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccc
Q 003813          517 ILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGF  596 (793)
Q Consensus       517 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (793)
                      +|++++|++++ ++ .+..+++|+.|++++|++++..+  +..+                                    
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l------------------------------------  150 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGL------------------------------------  150 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGC------------------------------------
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCC------------------------------------
Confidence            77777777774 33 36777788888888887764322  3333                                    


Q ss_pred             hhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCC
Q 003813          597 LVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL  676 (793)
Q Consensus       597 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  676 (793)
                              +.|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +..+
T Consensus       151 --------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l  216 (308)
T 1h6u_A          151 --------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT  216 (308)
T ss_dssp             --------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             --------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence                    334778888888875333  8888999999999999985443  8889999999999999986553  8889


Q ss_pred             CCCCeEEcccCcccc
Q 003813          677 SFLNYLNLSNNNLNG  691 (793)
Q Consensus       677 ~~L~~L~ls~N~l~g  691 (793)
                      ++|++|++++|++++
T Consensus       217 ~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          217 SNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEEEEEEEEEC
T ss_pred             CCCCEEEccCCeeec
Confidence            999999999999976

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.7e-23  Score=218.17  Aligned_cols=212  Identities=15%  Similarity=0.237  Sum_probs=158.2

Q ss_pred             CCCccEEEccCCccccc-CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCC-ccccc-cCccccCCCCCC
Q 003813          415 SKNIEFFQLSKNHFSGE-IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN-RLSGI-IPTSFNNFTILE  491 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~  491 (793)
                      +++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            57888888888888765 6777788888888888888888777777888888888888888 67653 566677888899


Q ss_pred             EEeCCCC-ccccc-CchhHHhhcc-cCcEEEccCc--ccc-ccCCccccCCCCcCEEEcccCc-cccccCccccccccCc
Q 003813          492 ALDMGEN-ELVGN-IPTWMGERFS-RLIILNLRSN--KFH-GDFPIQLCRLASLQILDVAYNN-LSGTIPRCINNFSAMA  564 (793)
Q Consensus       492 ~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~  564 (793)
                      +|++++| .+++. ++..+. .++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+.++++  
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~--  248 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY--  248 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT--
T ss_pred             EEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC--
Confidence            9999888 87754 455554 688 8999999888  444 4556667778889999999988 66555655555444  


Q ss_pred             cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-ceeeCccccccccCCceeeccCCcccc
Q 003813          565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSGEVPVEVTNLQGLQSLNFSYNLFTG  643 (793)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~  643 (793)
                                                                |+.|++++|. ++......+.++++|++|++++| ++ 
T Consensus       249 ------------------------------------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~-  284 (336)
T 2ast_B          249 ------------------------------------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP-  284 (336)
T ss_dssp             ------------------------------------------CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC-
T ss_pred             ------------------------------------------CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC-
Confidence                                                      4788888885 33222235788899999999988 33 


Q ss_pred             cCCccccCcC-CCCEEECCCCcCCCCCcccccC
Q 003813          644 RIPDNIGVMR-SIESLDFSANQLSGYIPQSMSN  675 (793)
Q Consensus       644 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~  675 (793)
                        .+.+..+. .++.|++++|++++..|..++.
T Consensus       285 --~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          285 --DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             --TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             --HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence              22444443 4777789999999998887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2.8e-21  Score=194.02  Aligned_cols=181  Identities=19%  Similarity=0.239  Sum_probs=152.4

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ...+.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            46789999999998 5666554  68999999999999988889999999999999999999999999999999999999


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      ++|+++ .+|...+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++                        
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------  145 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------  145 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence            999998 5555555589999999999999997666667778888888887777763                        


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI  655 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  655 (793)
                                                                  ..+..|+.+++|++|+|++|++++..|..|..+++|
T Consensus       146 --------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          146 --------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             --------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             --------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence                                                        233356677788888888888887777788888888


Q ss_pred             CEEECCCCcCCCC
Q 003813          656 ESLDFSANQLSGY  668 (793)
Q Consensus       656 ~~L~Ls~N~l~~~  668 (793)
                      +.|++++|.+++.
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            8888888888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=7.4e-21  Score=201.00  Aligned_cols=242  Identities=15%  Similarity=0.155  Sum_probs=183.6

Q ss_pred             cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCCCCCccE-
Q 003813          391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSSLMS-  468 (793)
Q Consensus       391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-  468 (793)
                      +.++.++++++. +|..+      ++++++|+|++|+++.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++ 
T Consensus        12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            456666666663 34322      4689999999999998777899999999999999999876554 57888988775 


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccC-ccccccCCccccCCC-CcCEEEccc
Q 003813          469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRS-NKFHGDFPIQLCRLA-SLQILDVAY  546 (793)
Q Consensus       469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~Ls~  546 (793)
                      +.+++|+++++.|..|.++++|++|++++|++. .+|...+....++..|++.+ +++....+..|..+. .++.|++++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            667789999998999999999999999999998 55554443566788899976 567655555666664 689999999


Q ss_pred             CccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEccc-CcceeeCcccc
Q 003813          547 NNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISK-NNFSGEVPVEV  625 (793)
Q Consensus       547 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~p~~~  625 (793)
                      |+++. +|......                                            ..++.+++++ |.++...+..|
T Consensus       164 N~i~~-i~~~~f~~--------------------------------------------~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          164 NGIQE-IHNSAFNG--------------------------------------------TQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             SCCCE-ECTTSSTT--------------------------------------------EEEEEEECTTCTTCCCCCTTTT
T ss_pred             ccccC-CChhhccc--------------------------------------------cchhHHhhccCCcccCCCHHHh
Confidence            99984 44332222                                            2358899985 55664444578


Q ss_pred             ccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcc
Q 003813          626 TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL  689 (793)
Q Consensus       626 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  689 (793)
                      .++++|++|||++|+++ .+|..  .+.+|+.|...++.--..+|. +.++++|+.++++++.-
T Consensus       199 ~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          199 HGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH  258 (350)
T ss_dssp             TTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred             ccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence            99999999999999999 45542  345666777666555557774 88999999999987643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5.3e-22  Score=210.97  Aligned_cols=271  Identities=19%  Similarity=0.146  Sum_probs=146.9

Q ss_pred             EEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCccc----ccccCCC-CCCEEeCcCCcCccCCcccccCC-----CC
Q 003813           66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP----SRLGNLT-SLKYLDLSFNQFNSVVPGWLSKL-----ND  135 (793)
Q Consensus        66 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~  135 (793)
                      ++++++|.+++..+..+...++|++|||++|.+++..+    .++..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677777777666555555568888888887776555    6677777 78888888887777666666553     77


Q ss_pred             CCEEEccCCccccccChh---hhcCC-CCCcEEEcCCCCCCCCCCcccc----cC-CCCCcEEEccCCcccccchhHHhh
Q 003813          136 LEFLSLQSNRLQGNISSL---GLENL-TSIQTLLLSGNDELGGKIPTSF----GR-FCKLKSFSTGFTNLSQDISEILGI  206 (793)
Q Consensus       136 L~~L~L~~n~l~~~i~~~---~~~~l-~~L~~L~L~~n~~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~~~~  206 (793)
                      |++|++++|.+++..+..   .+..+ ++|++|++++|. +++..+..+    .. .++|++|++++|.+++.....+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            888888888776333221   13334 677777777776 555544333    22 246666666666666433333222


Q ss_pred             hccccCCCccEEEccCccccccccccc----CCC-CCCCEEeCcCCcCCCC----cchhhcC-CCCCCEEEccCCCCccc
Q 003813          207 FSACVANELESLDLGSCQIFGHMTNQL----GRF-KGLNFLDLSNTTMDGS----IPLSLGQ-IANLEYLDLSKNELNGT  276 (793)
Q Consensus       207 ~~~~~~~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~  276 (793)
                      ......++|++|++++|++++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|+|++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            111111256666666666655444322    233 3566666666665542    2333333 23566666666655432


Q ss_pred             cCh---hhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChh
Q 003813          277 VSE---IHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR  353 (793)
Q Consensus       277 ~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  353 (793)
                      ...   ..+..+++|++|++++|.+.......                 ...++..+..+++|++|++++|++.+..+..
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~-----------------~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ-----------------CKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH-----------------HHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHH-----------------HHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            211   12233444444444444421110000                 0011223445666777777777766554444


Q ss_pred             H
Q 003813          354 F  354 (793)
Q Consensus       354 ~  354 (793)
                      +
T Consensus       304 ~  304 (362)
T 3goz_A          304 I  304 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.5e-20  Score=194.46  Aligned_cols=195  Identities=25%  Similarity=0.337  Sum_probs=139.9

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS  111 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  111 (793)
                      ...+++|++|++++|.++.++.    +..+++|++|++++|.++++++  +..+++|++|++++|.+++.  ..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~----~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccCchh----hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence            4456777777777777776542    4567777777777777777665  67777777777777777743  35777777


Q ss_pred             CCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813          112 LKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST  191 (793)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l  191 (793)
                      |++|++++|.+++. + .+..+++|++|++++|.++ .++.  ++.+++|++|++++|. +++. +. +..+++|+.|++
T Consensus       109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~-l~~~-~~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQ-VSDL-TP-LANLSKLTTLKA  180 (308)
T ss_dssp             CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCc-CCCC-hh-hcCCCCCCEEEC
Confidence            77777777777664 2 2677777777777777776 4443  6677777777777776 5443 22 777777777777


Q ss_pred             cCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC
Q 003813          192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG  251 (793)
Q Consensus       192 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  251 (793)
                      ++|.+++..+  +..+     ++|++|++++|++.+..+  +..+++|++|++++|.+++
T Consensus       181 ~~n~l~~~~~--l~~l-----~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          181 DDNKISDISP--LASL-----PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CSSCCCCCGG--GGGC-----TTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCccCcChh--hcCC-----CCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            7777765433  4444     889999999999876653  7889999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=3e-21  Score=189.02  Aligned_cols=178  Identities=20%  Similarity=0.207  Sum_probs=132.6

Q ss_pred             CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC-ccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813          491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP-IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS  569 (793)
Q Consensus       491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  569 (793)
                      +.+++++|.++ .+|..+.   ..+++|++++|++++..| ..|..+++|+.|++++|++++..+..+.+++.|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            35666666665 4555432   345667777777765543 346677777777777777776555555554444      


Q ss_pred             CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813          570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI  649 (793)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  649 (793)
                                                            +.|+|++|++++..|..|.++++|++|+|++|++++..|..|
T Consensus        84 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  125 (220)
T 2v70_A           84 --------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF  125 (220)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred             --------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence                                                  677888888887777789999999999999999999889999


Q ss_pred             cCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCcc-ccCCCccCCC
Q 003813          650 GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSS-FADNDLCGAP  716 (793)
Q Consensus       650 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~-~~~n~l~~~~  716 (793)
                      ..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+..+...++.... +.++..|+.|
T Consensus       126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P  193 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP  193 (220)
T ss_dssp             TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred             CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence            999999999999999999999999999999999999999999998654333332211 2344556544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.9e-20  Score=207.55  Aligned_cols=189  Identities=28%  Similarity=0.396  Sum_probs=135.4

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      .+++.|++++|.+++ +|..+  .++|++|+|++|+++ .+|   ..+++|++|++++|++++ +|. +.+  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            478888888888886 56544  367888888888888 566   346788888888888886 555 544  7888888


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      ++|++++ +|.    .+++|++|++++|++++ +|.   .+++|+.|++++|++++ +|. +.  +              
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~--------------  180 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E--------------  180 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T--------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C--------------
Confidence            8888874 666    36788888888888875 554   46778888888888775 554 32  2              


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCC-------ceeeccCCcccccCCcc
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGL-------QSLNFSYNLFTGRIPDN  648 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~  648 (793)
                                                    .|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..
T Consensus       181 ------------------------------~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          181 ------------------------------SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             ------------------------------TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred             ------------------------------CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence                                          2467777777777 5565 544  56       77777777777 57777


Q ss_pred             ccCcCCCCEEECCCCcCCCCCcccccCCC
Q 003813          649 IGVMRSIESLDFSANQLSGYIPQSMSNLS  677 (793)
Q Consensus       649 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  677 (793)
                      +..+++|+.|+|++|.+++.+|..+..++
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            77777777777777777777777666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.8e-20  Score=207.89  Aligned_cols=134  Identities=28%  Similarity=0.376  Sum_probs=60.8

Q ss_pred             CCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccE
Q 003813          389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMS  468 (793)
Q Consensus       389 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  468 (793)
                      .++.+++++|.+++ +|..+      +++|+.|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred             CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence            44455555555444 33211      134555555555554 233   223445555555555543 333 332  4555


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813          469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN  548 (793)
Q Consensus       469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  548 (793)
                      |++++|++++ +|.   .+++|+.|++++|++++ +|.    .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+
T Consensus       125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            5555555544 222   34455555555555542 443    23445555555555543 333 33  445555555555


Q ss_pred             cc
Q 003813          549 LS  550 (793)
Q Consensus       549 l~  550 (793)
                      ++
T Consensus       192 L~  193 (571)
T 3cvr_A          192 LE  193 (571)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.1e-20  Score=180.60  Aligned_cols=128  Identities=22%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 003813          420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE  499 (793)
Q Consensus       420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  499 (793)
                      .++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            44455555442 23222  2356666666666665544455556666666666666665555555556666666666666


Q ss_pred             ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc
Q 003813          500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG  551 (793)
Q Consensus       500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  551 (793)
                      ++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus        88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            55 3333333345556666666665554444445555666666666665553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.3e-20  Score=184.53  Aligned_cols=158  Identities=17%  Similarity=0.201  Sum_probs=130.4

Q ss_pred             CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCC
Q 003813          491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD  570 (793)
Q Consensus       491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  570 (793)
                      +.++++++.++ .+|..+.   ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            45666777666 5665442   467788888888876666677888888888888888887767776665554       


Q ss_pred             CCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcccc
Q 003813          571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG  650 (793)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  650 (793)
                                                           +.|+|++|++++..+..|.++++|++|+|++|++++..|..|.
T Consensus        83 -------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           83 -------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             -------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence                                                 7788888888866666788999999999999999998899999


Q ss_pred             CcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          651 VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       651 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      .+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+..
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            9999999999999999988889999999999999999999988744

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.4e-19  Score=176.00  Aligned_cols=150  Identities=29%  Similarity=0.302  Sum_probs=77.5

Q ss_pred             cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813           13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD   92 (793)
Q Consensus        13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   92 (793)
                      +.++.+++.++.++..+     .++|++|++++|++++++.  ..+..+++|++|++++|+++.+++..|.++++|++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPN--GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCCh--hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            34555555554444322     2355555555555555432  1234555555555555555555554455555555555


Q ss_pred             CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813           93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus        93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      +++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence            5555555444444555555555555555555544444555555555555555555 3333334455555555555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.3e-19  Score=191.35  Aligned_cols=237  Identities=16%  Similarity=0.096  Sum_probs=172.6

Q ss_pred             cEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCE-EeCC
Q 003813          419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEA-LDMG  496 (793)
Q Consensus       419 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~  496 (793)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56788888888 566655  3679999999999997767789999999999999999866554 67888888775 5667


Q ss_pred             CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEccc-CccccccCccccccccCccccCCCCCCcc
Q 003813          497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAY-NNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      .|+++ .++...+..+++|++|++++|++.+..+..+.....+..+++.+ +++....+..+..+.              
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------  153 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  153 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence            78888 55554455789999999999999876666677777888888876 455433333333322              


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccC-CcccccCCccccCcCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSY-NLFTGRIPDNIGVMRS  654 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~  654 (793)
                                                   ..++.|+|++|+|+. +|.......+|++|++++ |.++...++.|+++++
T Consensus       154 -----------------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          154 -----------------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             -----------------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             -----------------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence                                         235789999999995 555555667899999985 6677444467899999


Q ss_pred             CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCcc
Q 003813          655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSS  706 (793)
Q Consensus       655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~  706 (793)
                      |+.||+++|+++...+..|   ..|+.|.+.+++--..+|.-..+..+....
T Consensus       204 L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~  252 (350)
T 4ay9_X          204 PVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEAS  252 (350)
T ss_dssp             CSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred             cchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence            9999999999996555444   456666666555455777654444444333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=2.7e-19  Score=176.32  Aligned_cols=157  Identities=20%  Similarity=0.210  Sum_probs=129.9

Q ss_pred             CCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813          490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS  569 (793)
Q Consensus       490 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  569 (793)
                      .+.++.+++.+. .+|..+   .++|++|+|++|++++..|..+..+++|+.|+|++|++.+..+..+.+++.       
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-------   89 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------   89 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence            456777777765 666654   367888888888888777778888888888888888886444444555444       


Q ss_pred             CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813          570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI  649 (793)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  649 (793)
                                                           |+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus        90 -------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           90 -------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             -------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred             -------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence                                                 478888889888777777899999999999999999 889999


Q ss_pred             cCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813          650 GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       650 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  695 (793)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|+.
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            9999999999999999988888899999999999999999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=2.2e-19  Score=190.36  Aligned_cols=180  Identities=23%  Similarity=0.208  Sum_probs=116.8

Q ss_pred             CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCcccc-CCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813          443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFN-NFTILEALDMGENELVGNIPTWMGERFSRLIILNLR  521 (793)
Q Consensus       443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  521 (793)
                      +.+++++++++ .+|..+.  +.++.|+|++|++++..+..|. ++++|+.|+|++|++++ ++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence            57888888887 4665543  4577888888888877766666 67777777777776663 332222245555555555


Q ss_pred             CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813          522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK  601 (793)
Q Consensus       522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (793)
                      +|++++..+..|..+++|+                                                             
T Consensus        97 ~N~l~~~~~~~~~~l~~L~-------------------------------------------------------------  115 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALE-------------------------------------------------------------  115 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCC-------------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCC-------------------------------------------------------------
Confidence            5555544333444444444                                                             


Q ss_pred             hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc---cCcCCCCEEECCCCcCCCCCcccccCCCC
Q 003813          602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI---GVMRSIESLDFSANQLSGYIPQSMSNLSF  678 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  678 (793)
                             .|+|++|+|++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|||++|++++..+..+..++.
T Consensus       116 -------~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          116 -------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             -------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred             -------EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence                   45555555555556667777778888888888874433334   56788888888888888666677777776


Q ss_pred             --CCeEEcccCcccccCC
Q 003813          679 --LNYLNLSNNNLNGEIP  694 (793)
Q Consensus       679 --L~~L~ls~N~l~g~ip  694 (793)
                        ++.|++++|++.|.|.
T Consensus       189 ~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          189 WVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHHTTEECCSSCEECCHH
T ss_pred             hhcceEEecCCCccCCcC
Confidence              4778888888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=8.1e-19  Score=179.79  Aligned_cols=187  Identities=20%  Similarity=0.301  Sum_probs=113.9

Q ss_pred             EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 003813          420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE  499 (793)
Q Consensus       420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  499 (793)
                      .+.+..+.+++..  .+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|+.|++++|+
T Consensus        28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            3345555554332  233466677777777777633 2 35666677777777776665433  5666666666666666


Q ss_pred             ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813          500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      ++ .+|. +. .+++|++|++++|++++.  ..+..+++|                                        
T Consensus       102 l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L----------------------------------------  136 (291)
T 1h6t_A          102 VK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL----------------------------------------  136 (291)
T ss_dssp             CC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC----------------------------------------
T ss_pred             CC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC----------------------------------------
Confidence            55 2332 22 344444444444444431  233334444                                        


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD  659 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  659 (793)
                                                  +.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|+
T Consensus       137 ----------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          137 ----------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             ----------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ----------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence                                        4555555555533  456777788888888888875444  77888888888


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813          660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  691 (793)
                      +++|++++ +| .+..+++|+.|++++|++++
T Consensus       185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            88888875 34 37788888888888888775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4.1e-19  Score=181.99  Aligned_cols=126  Identities=23%  Similarity=0.306  Sum_probs=107.6

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +++|+.|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++.  ..+..+++|+.|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence            67899999999999865 3 48889999999999999996554  89999999999999999864  3489999999999


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG  551 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  551 (793)
                      +++|++++ ++ .+. .+++|++|++++|++++.  ..+..+++|+.|++++|++++
T Consensus       119 L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          119 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            99999984 54 344 699999999999999964  567788888888888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=169.85  Aligned_cols=156  Identities=14%  Similarity=0.205  Sum_probs=98.5

Q ss_pred             CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813          443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR  521 (793)
Q Consensus       443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  521 (793)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..+ ..|..+++|+.|++++|+++                    
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--------------------   70 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------------   70 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence            46777777776 3555442  345666666666665533 33555555555555555554                    


Q ss_pred             CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813          522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK  601 (793)
Q Consensus       522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (793)
                           +..+..|..+++|++|+|++|++++..|..+.++++|                                      
T Consensus        71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------  107 (220)
T 2v70_A           71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL--------------------------------------  107 (220)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC--------------------------------------
T ss_pred             -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC--------------------------------------
Confidence                 3333444555555555555555554444434333333                                      


Q ss_pred             hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813          602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                            ++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+++..+
T Consensus       108 ------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          108 ------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                  556666666666667777788888888888888887778888888888888888888876544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=5.8e-19  Score=168.72  Aligned_cols=155  Identities=18%  Similarity=0.247  Sum_probs=114.4

Q ss_pred             cEEEccCccccccCCccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCCCccccccCCccchhhhhhhhhc
Q 003813          516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK  594 (793)
Q Consensus       516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (793)
                      +++++++|.++ .+|..+..  +|++|++++|++++..+. .+.+++.                                
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~--------------------------------   55 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPH--------------------------------   55 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTT--------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCC--------------------------------
Confidence            55666666665 45554432  677777777777654443 2444443                                


Q ss_pred             cchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc
Q 003813          595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS  674 (793)
Q Consensus       595 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  674 (793)
                                  |+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|+.|+|++|++++.+|..|.
T Consensus        56 ------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  123 (192)
T 1w8a_A           56 ------------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             ------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             ------------CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence                        36788888888877788889999999999999999988888899999999999999999999999999


Q ss_pred             CCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCC
Q 003813          675 NLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPL  717 (793)
Q Consensus       675 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~  717 (793)
                      .+++|++|++++|+++|.+|..+...++....+.++ ..|+.|.
T Consensus       124 ~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             cCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            999999999999999999886543333333334444 4565543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=7.7e-19  Score=197.15  Aligned_cols=124  Identities=23%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      +.|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence            4444444444444422 1 24444444444444444443222  44444444444444444431  13444444444444


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                      ++|++. .++. +. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.
T Consensus       117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            444444 2221 21 344444444444444432  23444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.5e-18  Score=182.23  Aligned_cols=180  Identities=22%  Similarity=0.212  Sum_probs=144.1

Q ss_pred             ccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCC-CCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813          418 IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG-TLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG  496 (793)
Q Consensus       418 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  496 (793)
                      -+.++++++.++. +|..+.  +.++.|+|++|++++..+..+. .+++|++|+|++|+|+++.+..|.++++|+.|+|+
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3689999999985 666553  4699999999999988888887 89999999999999999988999999999999999


Q ss_pred             CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813          497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF  576 (793)
Q Consensus       497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  576 (793)
                      +|+++ .++...+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+                
T Consensus        97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~----------------  159 (361)
T 2xot_A           97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG----------------  159 (361)
T ss_dssp             SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------
T ss_pred             CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc----------------
Confidence            99998 5665555589999999999999998888999999999999999999984322222111                


Q ss_pred             cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccC--CceeeccCCccc
Q 003813          577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG--LQSLNFSYNLFT  642 (793)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~  642 (793)
                                               ..++.|+.|||++|+|++..+..+..++.  ++.|+|++|.+.
T Consensus       160 -------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          160 -------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                                     11334567777777777555556666665  367777777776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.1e-17  Score=163.55  Aligned_cols=134  Identities=22%  Similarity=0.276  Sum_probs=65.3

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            34555555555555444445555555555555555555444555555555555555555555444444445555555555


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                      ++|++++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus       112 ~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            55555432232222 3445555555555554444444444445555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.3e-17  Score=164.40  Aligned_cols=156  Identities=21%  Similarity=0.290  Sum_probs=97.3

Q ss_pred             CCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813          442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR  521 (793)
Q Consensus       442 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  521 (793)
                      -+.++.++++++ .+|..+.  ++|++|++++|.+++..|..|.++++|+.|+|++|++. .+|...+..+++|++|+|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence            344555555555 3444332  55666666666666655666666666666666666664 4444333345555555555


Q ss_pred             CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813          522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK  601 (793)
Q Consensus       522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (793)
                      +|++++..+..+..+++|+.|++++|+++                                                   
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------------------------------------------------  125 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT---------------------------------------------------  125 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------------------------------------
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc---------------------------------------------------
Confidence            55555444444555666666666655554                                                   


Q ss_pred             hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813          602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP  670 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (793)
                                        .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..+
T Consensus       126 ------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 ------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence                              445566677788888888888886666778888888888888888876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1.8e-20  Score=209.32  Aligned_cols=191  Identities=21%  Similarity=0.211  Sum_probs=121.2

Q ss_pred             CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCc-------------cccccCccccCCCCCCEEe-CCCCccccc
Q 003813          438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR-------------LSGIIPTSFNNFTILEALD-MGENELVGN  503 (793)
Q Consensus       438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~~  503 (793)
                      .++.|+.|+|++|+++ .+|..++.+++|+.|++++|.             ..+..|..+.++++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            4555666666666665 455556666666666665543             3444555555556666555 4444332  


Q ss_pred             CchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCcc
Q 003813          504 IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDE  583 (793)
Q Consensus       504 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  583 (793)
                                .|..+.+++|.++.. |.     ..|+.|++++|.+++ +|. +++++.|                    
T Consensus       424 ----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L--------------------  465 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLV--------------------  465 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred             ----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence                      222233344444422 11     247777777777764 454 5544443                    


Q ss_pred             chhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCC
Q 003813          584 KIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN  663 (793)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  663 (793)
                                              +.|+|++|+|+ .+|..++++++|+.|+|++|++++ +| .++.+++|+.|+|++|
T Consensus       466 ------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          466 ------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             ------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             ------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence                                    67777777777 677777788888888888888874 66 6777888888888888


Q ss_pred             cCCCCC-cccccCCCCCCeEEcccCcccccCCCC
Q 003813          664 QLSGYI-PQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       664 ~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            887776 777888888888888888887776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=5.9e-18  Score=162.69  Aligned_cols=152  Identities=14%  Similarity=0.244  Sum_probs=93.5

Q ss_pred             CCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccc
Q 003813          487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT  566 (793)
Q Consensus       487 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  566 (793)
                      +++|+.|++++|.++ .+| .+. .+++|++|++++|.+. . +..+..+++|++|++++|++++..|..+..+++|   
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---  114 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---  114 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred             cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence            344444444444444 333 222 3455555555555443 1 2245556666666666666665555554444333   


Q ss_pred             cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCc-ccccC
Q 003813          567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL-FTGRI  645 (793)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~  645 (793)
                                                               +.|++++|++++..|..+..+++|++|++++|+ ++ .+
T Consensus       115 -----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~  152 (197)
T 4ezg_A          115 -----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DI  152 (197)
T ss_dssp             -----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC
T ss_pred             -----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-cc
Confidence                                                     566666666666667777788888888888887 55 55


Q ss_pred             CccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813          646 PDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG  691 (793)
Q Consensus       646 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  691 (793)
                      | .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            5 57888888888888888875 33 67788888888888888754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=1.1e-18  Score=182.75  Aligned_cols=100  Identities=14%  Similarity=0.073  Sum_probs=48.4

Q ss_pred             CCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCC-EEEccCCCCccccChhhhhcCCCCcEE
Q 003813          213 NELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLE-YLDLSKNELNGTVSEIHFVNLTKLVTF  291 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L  291 (793)
                      ++|+.+++++|++....+.+|.++++|+++++.+| ++.+.+.+|.+|++|+ .+++.+ .++ .++..+|.+|++|+.+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence            44555555555554444445555555555555554 4434444455555555 555544 333 3444455555555555


Q ss_pred             ECCCCeeeeecCCCCCCcccccEE
Q 003813          292 RANGNSLIFKINPNWVPPFQLTGL  315 (793)
Q Consensus       292 ~l~~n~l~~~~~~~~~~~~~L~~L  315 (793)
                      +++.|.+.......|..+++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            555554444444444444444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=8.4e-18  Score=161.62  Aligned_cols=152  Identities=17%  Similarity=0.286  Sum_probs=76.0

Q ss_pred             CCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCC
Q 003813           34 GLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK  113 (793)
Q Consensus        34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  113 (793)
                      .+++|++|++++|.++.++.    +..+++|++|++++|.++.++  .+..+++|++|++++|.+++..+..++.+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCccChHH----HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455555555555554431    344555555555555444432  345555555555555555544445555555555


Q ss_pred             EEeCcCCcCccCCcccccCCCCCCEEEccCCc-cccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813          114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR-LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG  192 (793)
Q Consensus       114 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~  192 (793)
                      +|++++|.+++..|..++.+++|++|++++|. +. .++.  +..+++|++|++++|. +++ ++ .+..+++|+.|+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~--l~~l~~L~~L~l~~n~-i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMP--LKTLPELKSLNIQFDG-VHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGG--GGGCSSCCEEECTTBC-CCC-CT-TGGGCSSCCEEEEC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHh--hcCCCCCCEEECCCCC-CcC-hH-HhccCCCCCEEEee
Confidence            55555555555444555555555555555554 33 4431  5555555555555554 332 11 45555555555555


Q ss_pred             CCccc
Q 003813          193 FTNLS  197 (793)
Q Consensus       193 ~n~l~  197 (793)
                      +|.+.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            55543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.9e-18  Score=191.46  Aligned_cols=121  Identities=24%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD  116 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  116 (793)
                      .+..+.+..+.+.++..    +..+++|++|++++|.+..++  .+..+++|+.|+|++|.+.+..+  +..+++|+.|+
T Consensus        22 ~l~~l~l~~~~i~~~~~----~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC----HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccc----hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            34444555555544322    234555666666666666554  35566666666666666664333  56666666666


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      |++|.+.+. | .+..+++|++|+|++|.+. .++.  +..+++|+.|+|++|.
T Consensus        94 Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~  142 (605)
T 1m9s_A           94 LDENKIKDL-S-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNK  142 (605)
T ss_dssp             CCSSCCCCC-T-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSC
T ss_pred             CcCCCCCCC-h-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCc
Confidence            666666552 2 4566666666666666665 3332  5566666666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=6.8e-18  Score=169.99  Aligned_cols=168  Identities=19%  Similarity=0.324  Sum_probs=108.0

Q ss_pred             CccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEc
Q 003813          465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDV  544 (793)
Q Consensus       465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  544 (793)
                      +++.+++++|.+++..  .+..+++|+.|++++|.++ .+| .+. .+++|++|++++|++++..+  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3444445555544332  3444555555555555554 344 222 45566666666666553322  566666666666


Q ss_pred             ccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccc
Q 003813          545 AYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVE  624 (793)
Q Consensus       545 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  624 (793)
                      ++|++++ +|....                                              +.|+.|++++|++++ ++ .
T Consensus        93 ~~N~l~~-l~~~~~----------------------------------------------~~L~~L~L~~N~l~~-~~-~  123 (263)
T 1xeu_A           93 NRNRLKN-LNGIPS----------------------------------------------ACLSRLFLDNNELRD-TD-S  123 (263)
T ss_dssp             CSSCCSC-CTTCCC----------------------------------------------SSCCEEECCSSCCSB-SG-G
T ss_pred             CCCccCC-cCcccc----------------------------------------------CcccEEEccCCccCC-Ch-h
Confidence            6666653 221100                                              234667777777764 33 5


Q ss_pred             cccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          625 VTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       625 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      +..+++|++|++++|++++ +| .++.+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            7888889999999999885 44 688889999999999999876  6688889999999999998876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=3.7e-18  Score=171.90  Aligned_cols=123  Identities=25%  Similarity=0.342  Sum_probs=78.1

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      .++..+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +.++++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44666677777776443  46667777777777777773 34 56677777777777777775544  667777777777


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                      ++|+++ .+|...  . ++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus        93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence            777776 344322  1 5666666666666642 2 3555666666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2.1e-18  Score=198.83  Aligned_cols=181  Identities=18%  Similarity=0.190  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccC
Q 003813          456 LPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR  535 (793)
Q Consensus       456 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  535 (793)
                      .+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|+++ .+|..++.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3444555555555555555555 33333445555555555555555 5555443 4555555555555555 44555555


Q ss_pred             CCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccC
Q 003813          536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN  615 (793)
Q Consensus       536 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  615 (793)
                      +++|++|+|++|.++ .+|..|+++++|                                            +.|+|++|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------------------------------------------~~L~L~~N  326 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL--------------------------------------------QFLGVEGN  326 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------------------CCEECTTS
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------------------cEEeCCCC
Confidence            555555555555554 445444444333                                            44555555


Q ss_pred             cceeeCccccccccC-CceeeccCCcccccCCccccCcCCCCEEECCCC--------cCCCCCcccccCCCCCCeEEccc
Q 003813          616 NFSGEVPVEVTNLQG-LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN--------QLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       616 ~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      .|++.+|..+..+.. +..|+|++|.++|.+|..      |+.|++++|        .+.+..+..+..+..+....+++
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~  400 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY  400 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence            555555555543321 123556666666555543      334444444        33344444445555566666666


Q ss_pred             Ccccc
Q 003813          687 NNLNG  691 (793)
Q Consensus       687 N~l~g  691 (793)
                      |-+.+
T Consensus       401 Nil~~  405 (727)
T 4b8c_D          401 NTLCQ  405 (727)
T ss_dssp             -CCCG
T ss_pred             ccccc
Confidence            66653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=3.5e-19  Score=198.87  Aligned_cols=106  Identities=23%  Similarity=0.310  Sum_probs=93.6

Q ss_pred             ceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813          606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS  685 (793)
Q Consensus       606 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  685 (793)
                      .|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..|+.+++|+.|+|++|++++ +| .+..+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            36899999999996 676 999999999999999999 899999999999999999999997 67 89999999999999


Q ss_pred             cCcccccC-CCC-CccCCcCCccccCCCccCCC
Q 003813          686 NNNLNGEI-PSS-TQLQSFGGSSFADNDLCGAP  716 (793)
Q Consensus       686 ~N~l~g~i-p~~-~~~~~~~~~~~~~n~l~~~~  716 (793)
                      +|++++.+ |.. ..+..+....+.+|.+++.|
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            99999986 654 45566677778888777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=4e-17  Score=170.75  Aligned_cols=286  Identities=12%  Similarity=0.095  Sum_probs=173.6

Q ss_pred             CCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc--ccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhc
Q 003813          333 QKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY--GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQ  410 (793)
Q Consensus       333 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~  410 (793)
                      ..++++|.++++ +...--..+...+++|+.|||++|++.  ...+..        ........+..|.+..       .
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--------~~~~~~~~~~~~~I~~-------~   87 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT--------YPNGKFYIYMANFVPA-------Y   87 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS--------SGGGCCEEECTTEECT-------T
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc--------ccccccccccccccCH-------H
Confidence            456777777754 211111122222667888888888776  111110        0012223333332211       1


Q ss_pred             ccCC--------CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCc----ccc
Q 003813          411 GENF--------SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR----LSG  478 (793)
Q Consensus       411 ~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~  478 (793)
                      .+..        +++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.+.+|.++.++..+....+.    ...
T Consensus        88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~  166 (329)
T 3sb4_A           88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR  166 (329)
T ss_dssp             TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred             HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence            2223        67777788777 7776777777778888888888777776777777777777766665532    223


Q ss_pred             ccCccccCCCCCC-EEeCCCCcccccCchhHHhh---cccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccC
Q 003813          479 IIPTSFNNFTILE-ALDMGENELVGNIPTWMGER---FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP  554 (793)
Q Consensus       479 ~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  554 (793)
                      ....+|.++..|+ .+.+....   .++..++..   ..++..+.+.++-...........+++|+.+++++|+++..-+
T Consensus       167 i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~  243 (329)
T 3sb4_A          167 WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD  243 (329)
T ss_dssp             TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred             ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence            3445566677776 55554432   344444322   3456666665542221111111236788888888887774444


Q ss_pred             ccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCc-e
Q 003813          555 RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ-S  633 (793)
Q Consensus       555 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~  633 (793)
                      .+|.++++|                                            +.+++++| ++...+.+|.++++|+ .
T Consensus       244 ~aF~~~~~L--------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          244 FTFAQKKYL--------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             TTTTTCTTC--------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             hhhhCCCCC--------------------------------------------CEEECCcc-cceehHHHhhCChhccEE
Confidence            556665554                                            67777776 6666667788888888 8


Q ss_pred             eeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEc
Q 003813          634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNL  684 (793)
Q Consensus       634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  684 (793)
                      +++++ .++...+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88887 677566778888888888888888888777778888888887763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2.8e-18  Score=197.87  Aligned_cols=191  Identities=19%  Similarity=0.183  Sum_probs=124.9

Q ss_pred             EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813          421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL  500 (793)
Q Consensus       421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  500 (793)
                      +++..|.+. ..++.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+|
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344445554 56788999999999999999998 67777779999999999999999 7889999999999999999999


Q ss_pred             cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813          501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL  580 (793)
Q Consensus       501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  580 (793)
                      + .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...                 
T Consensus       283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~-----------------  342 (727)
T 4b8c_D          283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-----------------  342 (727)
T ss_dssp             S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred             C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence            9 8999887 7999999999999998 788889999999999999999999888776543221                 


Q ss_pred             CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC--------cccccCCccccCc
Q 003813          581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN--------LFTGRIPDNIGVM  652 (793)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l  652 (793)
                                                ...++|++|.+++.+|..      |+.|++++|        .+.+..+..+..+
T Consensus       343 --------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l  390 (727)
T 4b8c_D          343 --------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDL  390 (727)
T ss_dssp             --------------------------HHHHHHHHCCCCCCCCCC------------------------------------
T ss_pred             --------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcc
Confidence                                      123678999999888865      456677777        5555566667778


Q ss_pred             CCCCEEECCCCcCC
Q 003813          653 RSIESLDFSANQLS  666 (793)
Q Consensus       653 ~~L~~L~Ls~N~l~  666 (793)
                      ..++...+++|.+.
T Consensus       391 ~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          391 AKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------CCC
T ss_pred             cccceeeeeccccc
Confidence            88888899999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=157.05  Aligned_cols=134  Identities=20%  Similarity=0.277  Sum_probs=106.5

Q ss_pred             cEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhcc
Q 003813          516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG  595 (793)
Q Consensus       516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (793)
                      +++++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45666666666 4554432  46777777777776 555555444443                                


Q ss_pred             chhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccC
Q 003813          596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN  675 (793)
Q Consensus       596 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  675 (793)
                                  +.|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus        57 ------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           57 ------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             ------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence                        67788888887777778999999999999999999888889999999999999999999877778999


Q ss_pred             CCCCCeEEcccCcccccCCCCC
Q 003813          676 LSFLNYLNLSNNNLNGEIPSST  697 (793)
Q Consensus       676 l~~L~~L~ls~N~l~g~ip~~~  697 (793)
                      +++|++|++++|++.|.|+..+
T Consensus       125 l~~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A          125 LSALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CTTCCEEECCSSCEECSGGGHH
T ss_pred             CccccEEEeCCCCeecCCcCHH
Confidence            9999999999999999887543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=5.6e-17  Score=154.91  Aligned_cols=156  Identities=20%  Similarity=0.254  Sum_probs=111.8

Q ss_pred             CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCc-cccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813          491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI-QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS  569 (793)
Q Consensus       491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  569 (793)
                      +.+++++|.++ .+|..+.   .++++|++++|++++..+. .+..+++|++|+|++|++++..|..+.+++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56666666664 6665443   2677777777777755543 36777788888888888877667666665544      


Q ss_pred             CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813          570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI  649 (793)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  649 (793)
                                                            +.|+|++|++++..|..|.++++|++|+|++|++++.+|..|
T Consensus        81 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  122 (192)
T 1w8a_A           81 --------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             --------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             --------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence                                                  678888888888888888899999999999999999889999


Q ss_pred             cCcCCCCEEECCCCcCCCCCccc-ccCCCCCCeEEcccCcccccCCCC
Q 003813          650 GVMRSIESLDFSANQLSGYIPQS-MSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       650 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      +.+++|+.|+|++|.+++..+.. +.  ..++...+..+...|.-|..
T Consensus       123 ~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~  168 (192)
T 1w8a_A          123 EHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT
T ss_pred             hcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH
Confidence            99999999999999998766521 11  11222344455556655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=6.3e-16  Score=145.72  Aligned_cols=88  Identities=17%  Similarity=0.173  Sum_probs=76.1

Q ss_pred             eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813          608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN  687 (793)
Q Consensus       608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  687 (793)
                      +.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            66777777777556666788999999999999999877778899999999999999999777777889999999999999


Q ss_pred             cccccCCC
Q 003813          688 NLNGEIPS  695 (793)
Q Consensus       688 ~l~g~ip~  695 (793)
                      +++|.+|.
T Consensus       135 ~~~~~~~~  142 (177)
T 2o6r_A          135 PWDCSCPR  142 (177)
T ss_dssp             CBCCCHHH
T ss_pred             CeeccCcc
Confidence            99998873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=7.8e-15  Score=157.46  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=51.1

Q ss_pred             CCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc
Q 003813          434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS  513 (793)
Q Consensus       434 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  513 (793)
                      .+|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++ .++...|.+|+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~  366 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI  366 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence            34555555555555443 44344455555555555555432 44444555555566665555544 33 44444444555


Q ss_pred             cCcEEEccCccccccCCccccCCCCcCE
Q 003813          514 RLIILNLRSNKFHGDFPIQLCRLASLQI  541 (793)
Q Consensus       514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~  541 (793)
                      +|+.+++..+ +. .+..+|.++++|+.
T Consensus       367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          367 NLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             CCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            5555555433 11 12334555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.3e-16  Score=144.90  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             eEEEcccCcceeeCccccccccCCceeeccCCcccccC-CccccCcCCCCEEECCCCcCCCCCc---ccccCCCCCCeEE
Q 003813          608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRI-PDNIGVMRSIESLDFSANQLSGYIP---QSMSNLSFLNYLN  683 (793)
Q Consensus       608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~  683 (793)
                      +.|++++|++++.+|..+..+++|++|++++|++++.. +..++.+++|+.|++++|.+++..+   ..+..+++|++||
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            55666666666556666667778888888888887432 2677788888888888888886555   4778888888888


Q ss_pred             cccCccc
Q 003813          684 LSNNNLN  690 (793)
Q Consensus       684 ls~N~l~  690 (793)
                      +++|.+.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            8888775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=3.3e-16  Score=143.05  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=98.7

Q ss_pred             cccCcEEEccCcccc-ccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813          512 FSRLIILNLRSNKFH-GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL  590 (793)
Q Consensus       512 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (793)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+.+++                             
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----------------------------   64 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-----------------------------   64 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-----------------------------
Confidence            356777777777777 66777777788888888888877644  3333333                             


Q ss_pred             hhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc-CCccccCcCCCCEEECCCCcCCCCC
Q 003813          591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR-IPDNIGVMRSIESLDFSANQLSGYI  669 (793)
Q Consensus       591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~  669 (793)
                                     .|+.|++++|.+++.+|..+..+++|++|++++|++++. .|..++.+++|+.|++++|++++..
T Consensus        65 ---------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           65 ---------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             ---------------TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             ---------------CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence                           347788888888877787788888899999999998853 3477888899999999999988776


Q ss_pred             c---ccccCCCCCCeEEccc
Q 003813          670 P---QSMSNLSFLNYLNLSN  686 (793)
Q Consensus       670 p---~~l~~l~~L~~L~ls~  686 (793)
                      +   ..+..+++|++||+++
T Consensus       130 ~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          130 DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHHCCCcccccCCC
Confidence            6   5788889999988864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=8.2e-16  Score=143.58  Aligned_cols=136  Identities=20%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             CCCccEEEccCCccc-ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813          415 SKNIEFFQLSKNHFS-GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL  493 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  493 (793)
                      +++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            578999999999998 67888889999999999999999865  778899999999999999998788888889999999


Q ss_pred             eCCCCcccccCc--hhHHhhcccCcEEEccCccccccCC---ccccCCCCcCEEEcccCccccccCc
Q 003813          494 DMGENELVGNIP--TWMGERFSRLIILNLRSNKFHGDFP---IQLCRLASLQILDVAYNNLSGTIPR  555 (793)
Q Consensus       494 ~L~~N~l~~~~p--~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (793)
                      ++++|+++ .+|  ..+. .+++|++|++++|++++..+   ..+..+++|+.|++++|.+. .+|.
T Consensus       101 ~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999998 444  4444 78999999999999996655   47889999999999999886 4443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.2e-14  Score=154.96  Aligned_cols=265  Identities=12%  Similarity=0.105  Sum_probs=156.6

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      +..++.+.+.+ .++.++..  +|.++ +|+.+.+..+ ++.+...+|.++ +|+.+++.. .+..+.+.+|.+|++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~--aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKD--AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTT--TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHh--hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            34555555543 23333222  23333 4555555544 555555555553 455665554 444344455555666666


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT  194 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n  194 (793)
                      +++++|+++.+...+|. ..+|+.+.+..+ +. .++..+|.++++|+.+++..+  +......+|.+ ++|+.+.+. +
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-T
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-C
Confidence            66655555554444454 355666665533 33 455555556666666665554  33333444444 455555552 2


Q ss_pred             cccccchhHHhhhccccCCCccEEEccCcccc-----cccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEcc
Q 003813          195 NLSQDISEILGIFSACVANELESLDLGSCQIF-----GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS  269 (793)
Q Consensus       195 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  269 (793)
                      .++..-...+..+     ++|+.+++.++.+.     ...+.+|..|++|+.+++.+ .++.+...+|.+|++|+.+++.
T Consensus       258 ~i~~I~~~aF~~c-----~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          258 GVTNIASRAFYYC-----PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TCCEECTTTTTTC-----TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             CccEEChhHhhCC-----CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence            2222222233333     56666666665543     45667788888999999884 4776777788888999999986


Q ss_pred             CCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcc-cccEEEccCccC
Q 003813          270 KNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRSCRL  322 (793)
Q Consensus       270 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~~~~  322 (793)
                      .+ ++ .+...+|.++ +|+.+++.+|.........|..++ .++.+.+..+.+
T Consensus       332 ~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          332 AN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            55 54 6777788888 899999998887776667777664 678888776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=2.1e-14  Score=153.13  Aligned_cols=266  Identities=11%  Similarity=0.091  Sum_probs=200.0

Q ss_pred             CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEE
Q 003813           60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFL  139 (793)
Q Consensus        60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  139 (793)
                      .+..++.+.+.. .++.+...+|.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .+..+.+.+|.++++|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            457788888875 5888888899986 7999999877 776667788885 799999996 7888788899999999999


Q ss_pred             EccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEE
Q 003813          140 SLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD  219 (793)
Q Consensus       140 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  219 (793)
                      ++++|.++ .++..+|. +.+|+.+.+..+  +......+|.++.+|+.+.+..+ ++..-...+..      .+|+.+.
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~  254 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVK  254 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEE
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEE
Confidence            99999998 88888787 689999999866  66667788999999999988764 22211122221      5788888


Q ss_pred             ccCcccccccccccCCCCCCCEEeCcCCcCC-----CCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECC
Q 003813          220 LGSCQIFGHMTNQLGRFKGLNFLDLSNTTMD-----GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN  294 (793)
Q Consensus       220 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  294 (793)
                      +. +.+......+|.+|++|+.+++.++.+.     ...+.+|.+|++|+.+++.+ .+. .++..+|.+|++|+.+.+.
T Consensus       255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEEC
T ss_pred             eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEEC
Confidence            84 4466666778888888888888877664     35566788888888888874 454 6777788888888888885


Q ss_pred             CCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCC-CCCeEEeecCcc
Q 003813          295 GNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQK-KLNDLYISSTRI  346 (793)
Q Consensus       295 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~i  346 (793)
                      .+ +......+|..+ +|+.+.+.++......+..+..++ .++.+++..+.+
T Consensus       332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            54 555666677777 777777777766554455555553 566666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=3.1e-14  Score=152.78  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +.+|+.+.+.++ ++.+...+|.+|++|+.+++..+ ++.+-..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            455666666543 44455566777777777777643 55555667777777777777655 6656666777777777777


Q ss_pred             CCCCcccccCchhHHhhcccCcE
Q 003813          495 MGENELVGNIPTWMGERFSRLII  517 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~  517 (793)
                      +..+ +. .+.. .+.++++|+.
T Consensus       373 lp~~-~~-~~~~-~F~~c~~L~~  392 (394)
T 4fs7_A          373 LPKR-LE-QYRY-DFEDTTKFKW  392 (394)
T ss_dssp             EEGG-GG-GGGG-GBCTTCEEEE
T ss_pred             ECCC-CE-Ehhh-eecCCCCCcE
Confidence            7544 22 2322 2335555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=8.9e-15  Score=139.44  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=87.5

Q ss_pred             cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813           13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD   92 (793)
Q Consensus        13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   92 (793)
                      ++++++++.++.++..+     .++|++|++++|.++.++.   .+..+++|++|++++|.++.+++..|.++++|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~n~i~~ip~---~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-----PRDVTELYLDGNQFTLVPK---ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-----CTTCCEEECCSSCCCSCCG---GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCCCcCCCCC-----CCCCCEEECCCCcCchhHH---HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            56777777776666543     2467777777777776542   456677777777777777777766677777777777


Q ss_pred             CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc
Q 003813           93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG  148 (793)
Q Consensus        93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  148 (793)
                      |++|.+++..+.+|..+++|++|+|++|.++...+..|..+++|++|++++|.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            77777776666667777777777777777776555566677777777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.6e-15  Score=138.48  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=100.7

Q ss_pred             CCCccEEEccCCccc-ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813          415 SKNIEFFQLSKNHFS-GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL  493 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  493 (793)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888888888887 67788888888888888888888865  677888888888888888887777777778888888


Q ss_pred             eCCCCccccc-CchhHHhhcccCcEEEccCccccccCC---ccccCCCCcCEEEccc
Q 003813          494 DMGENELVGN-IPTWMGERFSRLIILNLRSNKFHGDFP---IQLCRLASLQILDVAY  546 (793)
Q Consensus       494 ~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~  546 (793)
                      ++++|++++. .+..+. .+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888888742 224444 67888888888888886554   4677788888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2.5e-14  Score=134.66  Aligned_cols=108  Identities=31%  Similarity=0.392  Sum_probs=51.0

Q ss_pred             CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813           62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL  141 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  141 (793)
                      ++|++|++++|+++++++..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34455555555554444444444455555555555554433334444555555555555554444444444455555555


Q ss_pred             cCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813          142 QSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ++|.++ .++...+..+++|++|++++|+
T Consensus       108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          108 DTNQLK-SVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence            555444 3333323444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=1.5e-16  Score=152.94  Aligned_cols=152  Identities=21%  Similarity=0.254  Sum_probs=92.5

Q ss_pred             CCCCCEEeCCCCcccccCch------hHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccccc
Q 003813          487 FTILEALDMGENELVGNIPT------WMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNF  560 (793)
Q Consensus       487 l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  560 (793)
                      ...++.++++.+.+.|.+|.      .+. .+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            34444445555555444443      444 56667777777776664 45 6666667777777777665 344333222


Q ss_pred             ccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCc
Q 003813          561 SAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL  640 (793)
Q Consensus       561 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  640 (793)
                                                                  +.|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus        93 --------------------------------------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           93 --------------------------------------------DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             --------------------------------------------HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             --------------------------------------------CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence                                                        234667777777764 34 56677777777777777


Q ss_pred             ccccCC-ccccCcCCCCEEECCCCcCCCCCccc----------ccCCCCCCeEEcccCccc
Q 003813          641 FTGRIP-DNIGVMRSIESLDFSANQLSGYIPQS----------MSNLSFLNYLNLSNNNLN  690 (793)
Q Consensus       641 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  690 (793)
                      +++..+ +.+..+++|+.|++++|.+++.+|..          +..+++|++||  +|+++
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            774222 35677777777777777776665542          66777777776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=2.3e-14  Score=133.50  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      ++.|+|++|+|++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            47788888888888888899999999999999999987777889999999999999999988888899999999999999


Q ss_pred             CcccccCCC
Q 003813          687 NNLNGEIPS  695 (793)
Q Consensus       687 N~l~g~ip~  695 (793)
                      |+++|.++.
T Consensus       112 N~~~c~c~~  120 (170)
T 3g39_A          112 NPWDCACSD  120 (170)
T ss_dssp             SCBCTTBGG
T ss_pred             CCCCCCchh
Confidence            999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.3e-14  Score=134.66  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=88.0

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS  111 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  111 (793)
                      +..+.+|++|++++|.++.++..   ....++|++|++++|.++++  ..+..+++|++|++++|.+++..+..|..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            45667777777777777765431   12233777777777777776  25777777777777777777544444577777


Q ss_pred             CCEEeCcCCcCccCCcc--cccCCCCCCEEEccCCccccccChh---hhcCCCCCcEEEcCCCC
Q 003813          112 LKYLDLSFNQFNSVVPG--WLSKLNDLEFLSLQSNRLQGNISSL---GLENLTSIQTLLLSGND  170 (793)
Q Consensus       112 L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~i~~~---~~~~l~~L~~L~L~~n~  170 (793)
                      |++|++++|.+.. +|.  .+..+++|++|++++|.+. .++..   .+..+++|++|++++|.
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            7777777777755 343  5667777777777777776 45543   36667777777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.4e-14  Score=134.59  Aligned_cols=131  Identities=16%  Similarity=0.157  Sum_probs=107.9

Q ss_pred             CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813          414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL  493 (793)
Q Consensus       414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  493 (793)
                      .+++|+.|++++|+++. +|......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            36889999999999985 454333344999999999999875  578889999999999999997766667899999999


Q ss_pred             eCCCCcccccCch--hHHhhcccCcEEEccCccccccCCcc----ccCCCCcCEEEcccCccc
Q 003813          494 DMGENELVGNIPT--WMGERFSRLIILNLRSNKFHGDFPIQ----LCRLASLQILDVAYNNLS  550 (793)
Q Consensus       494 ~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~  550 (793)
                      ++++|++. .+|.  .+. .+++|++|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus        94 ~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999996 6776  444 7899999999999998 45653    888999999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=8.6e-14  Score=130.03  Aligned_cols=89  Identities=22%  Similarity=0.253  Sum_probs=79.7

Q ss_pred             eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      ++.|+|++|+|++..|..|.++++|++|+|++|++++..+..|+++++|+.|+|++|++++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            47788888888888888999999999999999999976667789999999999999999987777799999999999999


Q ss_pred             CcccccCCC
Q 003813          687 NNLNGEIPS  695 (793)
Q Consensus       687 N~l~g~ip~  695 (793)
                      |++.|.++.
T Consensus       115 N~~~c~~~~  123 (174)
T 2r9u_A          115 NPWDCECRD  123 (174)
T ss_dssp             SCBCTTBGG
T ss_pred             CCccccccc
Confidence            999998763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.6e-16  Score=148.96  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=37.0

Q ss_pred             eeEEEcccCcceeeCc-cccccccCCceeeccCCcccccCCcc----------ccCcCCCCEEECCCCcCC
Q 003813          607 VRGIDISKNNFSGEVP-VEVTNLQGLQSLNFSYNLFTGRIPDN----------IGVMRSIESLDFSANQLS  666 (793)
Q Consensus       607 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~  666 (793)
                      |+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            3556666666653222 35667777777777777777665543          67777888776  55554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=2.7e-11  Score=129.77  Aligned_cols=127  Identities=16%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD  494 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  494 (793)
                      +..|+.+.+.++.. .+...+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.
T Consensus       264 c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            56666666654433 2555667777777777775 3455455667777777777777643 5556667777777777777


Q ss_pred             CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813          495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL  549 (793)
Q Consensus       495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  549 (793)
                      +..+ ++ .+....|.+|++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       341 ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          341 IPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             ECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            7554 44 6666666677777777777765442   3455667777776665544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=1.7e-12  Score=120.86  Aligned_cols=106  Identities=24%  Similarity=0.243  Sum_probs=66.8

Q ss_pred             ccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeC
Q 003813           38 LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL  117 (793)
Q Consensus        38 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  117 (793)
                      .+++++++|.++.+|..   +  .++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        11 ~~~l~~s~n~l~~ip~~---~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG---I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCcc---C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            35566666666665432   1  256666666666666666666666666666666666666555555666666666666


Q ss_pred             cCCcCccCCcccccCCCCCCEEEccCCcccc
Q 003813          118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG  148 (793)
Q Consensus       118 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  148 (793)
                      ++|+++++.+..|..+++|++|++++|.+..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            6666666555556666666666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=6.1e-11  Score=127.01  Aligned_cols=318  Identities=11%  Similarity=0.113  Sum_probs=167.4

Q ss_pred             cCCCC-cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC---CCCCCCccCCCCCCCCEEECcCccCCCccccccc
Q 003813           32 LSGLS-LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK---LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG  107 (793)
Q Consensus        32 l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  107 (793)
                      |.+++ .|+.+.+..+ ++.+.+.  +|.+|.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~--AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSN--AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTT--TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHH--HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            44443 3555555432 4444222  34555556655555442   44555555555555555555433 3323344555


Q ss_pred             CCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCc
Q 003813          108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLK  187 (793)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~  187 (793)
                      .+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++ .+...+|.+ ..|+.+.+..+  .......++..+..++
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~--~~~i~~~af~~c~~l~  208 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK--VTRIGTNAFSECFALS  208 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT--CCEECTTTTTTCTTCC
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc--ccccccchhhhccccc
Confidence            5566666665532 33334445555556666655543 22 344444433 34555555544  3333334455555555


Q ss_pred             EEEccCCcccccchhHHh--------hhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcC
Q 003813          188 SFSTGFTNLSQDISEILG--------IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQ  259 (793)
Q Consensus       188 ~L~l~~n~l~~~~~~~~~--------~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  259 (793)
                      ................+.        .........+..+.+.. .+......+|..+..|+.+.+.++... ....+|.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~  286 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN  286 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence            544333221110000000        00000013344444432 234455567888888999988766443 55677888


Q ss_pred             CCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeE
Q 003813          260 IANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDL  339 (793)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  339 (793)
                      +++|+.+.+. +.++ .++..+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +...-..+|.+|++|+.+
T Consensus       287 c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          287 CPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             CTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             ccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            8899999885 3444 677778889999999988764 55566677778888888887543 443445567777888888


Q ss_pred             EeecCccccccChhHHhccccccEEEeeCc
Q 003813          340 YISSTRISAKIPRRFWNSIFQYWFLNISGN  369 (793)
Q Consensus       340 ~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n  369 (793)
                      ++.++....    ..+..+..|+.+.+..+
T Consensus       363 ~~~~~~~~~----~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          363 EYSGSRSQW----NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EESSCHHHH----HTCBCCCCC--------
T ss_pred             EECCceeeh----hhhhccCCCCEEEeCCC
Confidence            777765421    11223445555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.5e-12  Score=120.02  Aligned_cols=104  Identities=20%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      +.+++++|.++.+|..   +  .++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        15 ~~l~~~~n~l~~iP~~---~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG---I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCccCCC---c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            4455555555554331   1  1455555555555555555555555555555555555554433444555555555555


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCccc
Q 003813          119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQ  147 (793)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  147 (793)
                      +|+++++.+..|..+++|++|++++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            55555544444555555555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=4.1e-14  Score=149.35  Aligned_cols=67  Identities=22%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             eeEEEcccCcceee----CccccccccCCceeeccCCccccc----CCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813          607 VRGIDISKNNFSGE----VPVEVTNLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFSANQLSGYIPQSM  673 (793)
Q Consensus       607 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  673 (793)
                      |++|||++|.+++.    ++..+...++|++|+|++|.++..    ++..+...++|++|||++|.++......+
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            45555555555432    234455556666667766666642    23334445666777777776664444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=5.5e-12  Score=132.91  Aligned_cols=86  Identities=21%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             eEEEccc-CcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          608 RGIDISK-NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       608 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      +.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            4555554 555555555666666666666666666666666666666666666666666655555555554 66666666


Q ss_pred             CcccccCC
Q 003813          687 NNLNGEIP  694 (793)
Q Consensus       687 N~l~g~ip  694 (793)
                      |++.|.|+
T Consensus       113 N~~~c~c~  120 (347)
T 2ifg_A          113 NPLHCSCA  120 (347)
T ss_dssp             SCCCCCGG
T ss_pred             CCccCCCc
Confidence            66666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.20  E-value=2.1e-09  Score=114.60  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCC
Q 003813          415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI  489 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  489 (793)
                      +++|+.+.+.++.++.+...+|.+|.+|+.++|..+ ++.+-..+|.+|.+|+.+.+..+ ++.+...+|.+++.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            455666666555555555666777777777777543 55455566777777777766543 55555666666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=2.5e-11  Score=127.85  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCC
Q 003813          608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG  667 (793)
Q Consensus       608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  667 (793)
                      +.|||++|+|++..|..|.++++|+.|+|++|+|++..|..|..++ |+.|+|++|.+..
T Consensus        59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            5566666666666666677777777777777777755555555554 7777777777663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=3.5e-12  Score=134.49  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             CCccEEEccCccccccc----ccccCCCCCCCEEeCcCCcCCCCc----chhhcCCCCCCEEEccCCCCcc
Q 003813          213 NELESLDLGSCQIFGHM----TNQLGRFKGLNFLDLSNTTMDGSI----PLSLGQIANLEYLDLSKNELNG  275 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~  275 (793)
                      ++|++|+|++|.+....    +..+...++|++|+|++|.+++..    +..+...++|++|+|++|.+++
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            55666666666664322    344555566777777777766432    2334455677777777777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.07  E-value=8.9e-09  Score=109.63  Aligned_cols=305  Identities=10%  Similarity=0.072  Sum_probs=183.5

Q ss_pred             cccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCC
Q 003813           30 SWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNL  109 (793)
Q Consensus        30 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  109 (793)
                      +|+....+|+.+.+.. .++.+++.  +|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|...
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~--aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEA--NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT  113 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTT--TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccCCEEEEeCC-CccChHHH--HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC
Confidence            3566667777777764 35555333  4667788888887643 777777777776 5777766543 443444556554


Q ss_pred             CCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC-----------CCCcc
Q 003813          110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG-----------GKIPT  178 (793)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~-----------~~~~~  178 (793)
                       +|+.+++..+ +..+....|... +|+...+..+ ++ .+...+|..+..++...+..+....           .....
T Consensus       114 -~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          114 -DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             -CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             -CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence             6788877654 333344455444 4666555443 33 4444446677777777665543110           11122


Q ss_pred             cccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhc
Q 003813          179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG  258 (793)
Q Consensus       179 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  258 (793)
                      .+.....+..+.+...... .....+...     ..++.+.+..+ +......++..+..|+.+.+..+ ++.+...+|.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~-----~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~  260 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYG-----KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ  260 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCE-ECTTTTTTC-----SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred             cccccccccccccccceeE-Eeecccccc-----cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence            2334444444443322110 111111112     56777777554 34455566777888888888765 5555566778


Q ss_pred             CCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCe
Q 003813          259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLND  338 (793)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  338 (793)
                      ++.+|+.+.+..+ +. .++...|.++++|+.+.+.++.+.......|..+.+|+.+.+..+ +...-..+|.+|++|+.
T Consensus       261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          261 NCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             eeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            8888888888654 43 566667888888888888887777777778888888888888653 44344567888888988


Q ss_pred             EEeecCccccccChhHHhcc
Q 003813          339 LYISSTRISAKIPRRFWNSI  358 (793)
Q Consensus       339 L~l~~n~i~~~~~~~~~~~~  358 (793)
                      +.+..+ ++. +....|..+
T Consensus       338 i~ip~~-v~~-I~~~aF~~c  355 (379)
T 4h09_A          338 ISYPKS-ITL-IESGAFEGS  355 (379)
T ss_dssp             CCCCTT-CCE-ECTTTTTTS
T ss_pred             EEECCc-cCE-EchhHhhCC
Confidence            888654 433 344444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=2.7e-09  Score=111.35  Aligned_cols=82  Identities=15%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             cceeEEEcccCcceeeCccccc---cccCCceeeccCCccccc----CCccccCcCCCCEEECCCCcCCCCCcccccC-C
Q 003813          605 NLVRGIDISKNNFSGEVPVEVT---NLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFSANQLSGYIPQSMSN-L  676 (793)
Q Consensus       605 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l  676 (793)
                      +.|+.|+|++|.+++..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. +
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            3445555555555433322222   356777777777777653    3444456677888888877776433333332 2


Q ss_pred             CCCCeEEcccCc
Q 003813          677 SFLNYLNLSNNN  688 (793)
Q Consensus       677 ~~L~~L~ls~N~  688 (793)
                        ...+|++.++
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              3557777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=1.2e-08  Score=106.36  Aligned_cols=166  Identities=15%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhh--cCCCCCcEEEcCCCCC-CCCC-Cc
Q 003813          102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL--ENLTSIQTLLLSGNDE-LGGK-IP  177 (793)
Q Consensus       102 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~--~~l~~L~~L~L~~n~~-~~~~-~~  177 (793)
                      +...+..+|+|+.|++++|.-.. .+. +. +++|++|++..|.+....... +  ..+++|++|+|+.+.. ..+. ..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccchhH
Confidence            33455667778888877763112 222 32 678888888777664221111 3  2677888887753210 1110 00


Q ss_pred             ccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccccccccc---CCCCCCCEEeCcCCcCCCCc-
Q 003813          178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL---GRFKGLNFLDLSNTTMDGSI-  253 (793)
Q Consensus       178 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~-  253 (793)
                      ..+..                    .+   ....+++|++|++.+|.+....+..+   ..+++|++|+|+.|.+++.. 
T Consensus       240 ~~l~~--------------------~l---~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          240 NVFRP--------------------LF---SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             GGTGG--------------------GS---CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             HHHHH--------------------HH---hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            00000                    00   00011455555555555543222222   23456677777666666532 


Q ss_pred             ---chhhcCCCCCCEEEccCCCCccccChhhhhc-CCCCcEEECCCCe
Q 003813          254 ---PLSLGQIANLEYLDLSKNELNGTVSEIHFVN-LTKLVTFRANGNS  297 (793)
Q Consensus       254 ---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~  297 (793)
                         +..+..+++|+.|++++|.++..... .+.. +  ...++++.++
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECCSBC
T ss_pred             HHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEecCCc
Confidence               22334457777777777766533221 2222 2  3556776665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=5.4e-08  Score=95.90  Aligned_cols=84  Identities=24%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             EEcccCcce---eeCccccccccCCceeeccCCcccc--cCCccccCcCCCCEEECCCCcCCCCCcccccCCC--CCCeE
Q 003813          610 IDISKNNFS---GEVPVEVTNLQGLQSLNFSYNLFTG--RIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS--FLNYL  682 (793)
Q Consensus       610 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  682 (793)
                      ++++.|+..   +.++....++++|++|+|++|++++  .+|..++.+++|+.|+|++|++++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            666777433   2222233567889999999999987  4567778899999999999999865  3344444  89999


Q ss_pred             EcccCcccccCCC
Q 003813          683 NLSNNNLNGEIPS  695 (793)
Q Consensus       683 ~ls~N~l~g~ip~  695 (793)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999887773

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=2.2e-07  Score=91.51  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             hhccceeEEEcccCccee--eCccccccccCCceeeccCCcccccCCccccCcC--CCCEEECCCCcCCCCCcc------
Q 003813          602 SILNLVRGIDISKNNFSG--EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR--SIESLDFSANQLSGYIPQ------  671 (793)
Q Consensus       602 ~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~------  671 (793)
                      ..++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  +.+..++  +|+.|+|++|.+++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457889999999999998  5567888999999999999999965  3456565  999999999999987763      


Q ss_pred             -cccCCCCCCeEEc
Q 003813          672 -SMSNLSFLNYLNL  684 (793)
Q Consensus       672 -~l~~l~~L~~L~l  684 (793)
                       .+..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             4778899998873

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=5.6e-08  Score=91.33  Aligned_cols=87  Identities=18%  Similarity=0.140  Sum_probs=40.4

Q ss_pred             CCCCCCCEEECcCccCCCc----ccccccCCCCCCEEeCcCCcCccC----CcccccCCCCCCEEEc--cCCccccc---
Q 003813           83 ANFSSLTTLDLSENEFQGQ----IPSRLGNLTSLKYLDLSFNQFNSV----VPGWLSKLNDLEFLSL--QSNRLQGN---  149 (793)
Q Consensus        83 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~---  149 (793)
                      ...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+...++|++|++  ++|.+...   
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3344555555555554421    122333344555555555555432    2233444555555555  55555421   


Q ss_pred             -cChhhhcCCCCCcEEEcCCCC
Q 003813          150 -ISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       150 -i~~~~~~~l~~L~~L~L~~n~  170 (793)
                       +.. .+...++|++|++++|.
T Consensus       142 ~l~~-~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          142 EIAN-MLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHH-HHHhCCCcCEEeccCCC
Confidence             111 14444556666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=8.8e-08  Score=89.96  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             CCCCccEEEccCC-ccccc----CCCCccCCCCCCEEEccCCccccc----CCCCCCCCCCccEEEccCCccccc----c
Q 003813          414 FSKNIEFFQLSKN-HFSGE----IPDCWMNWPRLRMLNLRNNNFTGS----LPMSIGTLSSLMSLNLRNNRLSGI----I  480 (793)
Q Consensus       414 ~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~  480 (793)
                      ..+.|+.|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|...    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3455666666665 55432    223344456666666666666521    122233445666777777766643    2


Q ss_pred             CccccCCCCCCEEeC--CCCcccccCchhHH---hhcccCcEEEccCcccc
Q 003813          481 PTSFNNFTILEALDM--GENELVGNIPTWMG---ERFSRLIILNLRSNKFH  526 (793)
Q Consensus       481 ~~~~~~l~~L~~L~L--~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~  526 (793)
                      ...+...++|++|+|  ++|.+...-...+.   ...++|++|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            345556667777777  66766533222221   13466777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=3.1e-06  Score=76.97  Aligned_cols=16  Identities=25%  Similarity=0.403  Sum_probs=7.8

Q ss_pred             hcCCCCCcEEEcCCCC
Q 003813          155 LENLTSIQTLLLSGND  170 (793)
Q Consensus       155 ~~~l~~L~~L~L~~n~  170 (793)
                      +..+++|++|++++|.
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            3444555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.2e-05  Score=73.04  Aligned_cols=84  Identities=8%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             CccEEEccCCccccccCccccCCCCCCEEeCCCCc-ccccCchhHHh---hcccCcEEEccCcc-ccccCCccccCCCCc
Q 003813          465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE-LVGNIPTWMGE---RFSRLIILNLRSNK-FHGDFPIQLCRLASL  539 (793)
Q Consensus       465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L  539 (793)
                      .|+.||+++|.++...-..+.++++|+.|+|++|. +++.--..+..   .+++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666666666655444455666666666666663 44322222321   12467777777774 553222345667888


Q ss_pred             CEEEcccCc
Q 003813          540 QILDVAYNN  548 (793)
Q Consensus       540 ~~L~Ls~N~  548 (793)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.56  E-value=0.00011  Score=63.76  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             ceeeccCCccc-ccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          632 QSLNFSYNLFT-GRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       632 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|++.|.+-..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~   74 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV   74 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence            37888888886 46676543  57999999999999877888999999999999999999887643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.09  E-value=0.00015  Score=67.30  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=10.8

Q ss_pred             hhcccCCCCCccEEEccCCcccc
Q 003813          408 ICQGENFSKNIEFFQLSKNHFSG  430 (793)
Q Consensus       408 ~~~~~~~~~~L~~L~L~~n~l~~  430 (793)
                      ++..+...+.|+.|+|++|.+..
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd   84 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISD   84 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBH
T ss_pred             HHHHHhhCCCcCEEEccCCCCCh
Confidence            33444444455555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00039  Score=64.45  Aligned_cols=18  Identities=11%  Similarity=0.250  Sum_probs=8.3

Q ss_pred             hcCCCCCCEEEccCCCCc
Q 003813          257 LGQIANLEYLDLSKNELN  274 (793)
Q Consensus       257 l~~l~~L~~L~L~~n~l~  274 (793)
                      +..-+.|+.|+|++|++.
T Consensus        66 L~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCCcCEEEccCCCCC
Confidence            333444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.47  E-value=0.0035  Score=54.19  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=17.6

Q ss_pred             CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccC
Q 003813           63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF   98 (793)
Q Consensus        63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i   98 (793)
                      +|++|+|++|+|+.+++..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344555555555555444444444555555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	793
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 6e-20
 Identities = 69/288 (23%), Positives = 107/288 (37%), Gaps = 26/288 (9%)

Query: 438 NWPRLRMLNLRNNNFTG--SLPMSIGTLSSLMSLNLRNN-RLSGIIPTSFNNFTILEALD 494
              R+  L+L   N      +P S+  L  L  L +     L G IP +    T L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP 554
           +     V         +   L+ L+   N   G  P  +  L +L  +    N +SG IP
Sbjct: 108 ITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 555 RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISK 614
               +FS + T+ +  ++                             +  NL        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGK---------------------IPPTFANLNLAFVDLS 205

Query: 615 NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674
            N        +                       +G+ +++  LD   N++ G +PQ ++
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 675 NLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADND-LCGAPLPNCT 721
            L FL+ LN+S NNL GEIP    LQ F  S++A+N  LCG+PLP CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 56/277 (20%), Positives = 87/277 (31%), Gaps = 14/277 (5%)

Query: 231 NQLGRFKGLNFLDLSNTTMDG--SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
           +   +   +N LDLS   +     IP SL  +  L +L +                LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 289 VTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA 348
                   ++   I         L  L      L    P  + S   L  +     RIS 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 349 KIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLI 408
            IP  + +    +  + IS N++ G +P   +       +L           S ++    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-----------SRNMLEGD 212

Query: 409 CQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMS 468
                 S           +              L  L+LRNN   G+LP  +  L  L S
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
           LN+  N L G IP    N    +      N+ +   P
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 58/272 (21%), Positives = 99/272 (36%), Gaps = 11/272 (4%)

Query: 28  TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC-KLHHFPPLSSANFS 86
                +    + +L +S +NL K       + +LP L  L +     L    P + A  +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 87  SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
            L  L ++     G IP  L  + +L  LD S+N  +  +P  +S L +L  ++   NR+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 147 QGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGI 206
            G I            ++ +S N   G   PT           S         +      
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL----- 216

Query: 207 FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYL 266
                +++       +         ++G  K LN LDL N  + G++P  L Q+  L  L
Sbjct: 217 ---FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
           ++S N L G + +    NL +        N  
Sbjct: 274 NVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 56/243 (23%)

Query: 364 LNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFF 421
           L++SG  +            P+ ++L ++  L+   + G  ++   I         + + 
Sbjct: 55  LDLSGLNLPK--------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481
            ++  + SG IPD       L  L+   N  +G+LP SI +L +L+ +    NR+SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 482 TSFNNFTILEALDMGEN------------------------------------------- 498
            S+ +F+ L                                                   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 499 ---ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
              +               L  L+LR+N+ +G  P  L +L  L  L+V++NNL G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 556 CIN 558
             N
Sbjct: 287 GGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 8/263 (3%)

Query: 386 VTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRML 445
           V NL    DLS   L    + +     N       +    N+  G IP       +L  L
Sbjct: 52  VNNL----DLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 446 NLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
            + + N +G++P  +  + +L++L+   N LSG +P S ++   L  +    N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 506 TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565
              G        + +  N+  G  P     L    +                ++ +    
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNL--VRGIDISKNNFSGEVPV 623
             + +            + +    L   + +    + +  L  +  +++S NN  GE+P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 624 EVTNLQGLQSLNFSYNLFTGRIP 646
           +  NLQ      ++ N      P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 47/270 (17%), Positives = 82/270 (30%), Gaps = 36/270 (13%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           IP  L NL  L +L + G N  +     +                              L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAI---------------------------AKL 100

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
             L  L ++   +    P   +   +L TLD S N   G +P  + +L +L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
            +  +P      + L      S           L          L+       +      
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRN--------RLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
                 S            S    +    ++  L  LDL + +I+G +   L + K L+ 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
           L++S   + G IP   G +   +    + N
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 67/416 (16%), Positives = 130/416 (31%), Gaps = 51/416 (12%)

Query: 83  ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ 142
              +      L +      +     +L  +  L        S+    +  LN+L  ++  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 143 SNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISE 202
           +N+L        L+NLT +  +L++ N         +      L  F+   T++    + 
Sbjct: 75  NNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 203 ILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIAN 262
                    +N +  +   S        +   +   L  L                  AN
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL------------------AN 173

Query: 263 LEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRL 322
           L  L+      N          LT L +  A  N +        +    L  L +   +L
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL 231

Query: 323 GPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPS 382
             +    L S   L DL +++ +IS   P      +     L +  NQ+    P     +
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL---TELKLGANQISNISPLAGLTA 286

Query: 383 MPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRL 442
           +              N              +  KN+ +  L  N+ S   P    +  +L
Sbjct: 287 L-------------TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498
           + L   NN  +     S+  L+++  L+  +N++S + P    N T +  L + + 
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 7e-14
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 13/204 (6%)

Query: 484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILD 543
               T LE+L    N++    P  +    + L  L+L  N+        L  L +L  LD
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 544 VAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSI 603
           +A N +S   P  ++  + +                 G   +    L   +   +   S 
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 604 LNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN 663
           L  +  + +  NN S   PV   +L  LQ L F+ N  +     ++  + +I  L    N
Sbjct: 306 LKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 664 QLSGYIPQSMSNLSFLNYLNLSNN 687
           Q+S   P  ++NL+ +  L L++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 9e-11
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 28/160 (17%)

Query: 3   PHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASD--------- 53
              L +L+NL  LDL+          ++ LSGL+ L  L + +  +S  S          
Sbjct: 234 IGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 54  ---------SLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPS 104
                     +  I++L +L  L L F  +    P+S  + + L  L  + N+      S
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VS 345

Query: 105 RLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
            L NLT++ +L    NQ + + P  L+ L  +  L L   
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 23/213 (10%)

Query: 59  NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
             L +L+ L  +  ++    P      ++L  L L+ N+ +      L +LT+L  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPT 178
            NQ +++ P  LS L  L  L L +N++       GL  LT+++             +  
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-------------LNE 294

Query: 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
           +        S     T L+   + I  I       +L+ L   + ++     + L     
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
           +N+L   +  +    P  L  +  +  L L+  
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 57/341 (16%), Positives = 108/341 (31%), Gaps = 69/341 (20%)

Query: 6   LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVI------- 58
           +  L+NL  ++ S          I+ L  L+ L  + +++  ++  +    +        
Sbjct: 62  VEYLNNLTQINFSNNQLT----DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 59  ------------------------NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
                                   N++  +  L                +   L  L   
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 95  ENEF----QGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
           E       +    S L  LT+L+ L  + NQ + + P  +    +L+ LSL  N+L+   
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIG 235

Query: 151 SSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDIS--------- 201
           +   L +LT++  L L+ N ++    P       KL     G   +S             
Sbjct: 236 T---LASLTNLTDLDLANN-QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 202 ------EILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPL 255
                 ++  I        L  L L    I     + +     L  L  +N  +  S   
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVS 345

Query: 256 SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
           SL  + N+ +L    N+++         NLT++     N  
Sbjct: 346 SLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 62/392 (15%), Positives = 124/392 (31%), Gaps = 49/392 (12%)

Query: 8   NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
           +L  +  L       K    +I  +  L+ L  +  S+  L+     +  + +L  L ++
Sbjct: 42  DLDQVTTLQADRLGIK----SIDGVEYLNNLTQINFSNNQLT----DITPLKNLTKLVDI 93

Query: 68  KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
            ++  ++    P                             L + +  D+   +  + + 
Sbjct: 94  LMNNNQIADITP------------------LANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 128 GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLK 187
                 N +  +S  S        S G +         L+  +     I ++      + 
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER--LDISSNKVSDISVL 193

Query: 188 SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNT 247
           +  T   +L    ++I  I    +   L+ L L   Q+       L     L  LDL+N 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 248 TMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWV 307
            +    PLS   +  L  L L  N+++          LT L     N N    +      
Sbjct: 252 QISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNEN--QLEDISPIS 304

Query: 308 PPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNIS 367
               LT L +    +    P  + S  KL  L+ ++ ++S        N +    +L+  
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS--DVSSLAN-LTNINWLSAG 359

Query: 368 GNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNA 399
            NQ+    P  +   +       +   L++ A
Sbjct: 360 HNQISDLTPLANLTRI-------TQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 42/308 (13%), Positives = 93/308 (30%), Gaps = 52/308 (16%)

Query: 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471
           ++   +     L  N  +      + N   L  L L NN  +   P +   L  L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 472 RNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
             N+L  +          L   +    ++  ++   +      ++ L     K  G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENG 144

Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALL 591
               +  L  + +A  N++ TIP                                     
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIP------------------------------------- 166

Query: 592 VMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV 651
                    + +   +  + +  N  +      +  L  L  L  S+N  +     ++  
Sbjct: 167 ---------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 652 MRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGG--SSFAD 709
              +  L  + N+L   +P  +++  ++  + L NNN++    +      +    +S++ 
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 710 NDLCGAPL 717
             L   P+
Sbjct: 277 VSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 48/254 (18%), Positives = 82/254 (32%), Gaps = 13/254 (5%)

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P    L L   K+         N  +L TL L  N+     P     L  L+ L LS NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFG 181
              +       L +L     +  +++ ++ +        I   L +   +  G    +F 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
              KL       TN++     +           L  L L   +I       L     L  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301
           L LS  ++      SL    +L  L L+ N+L      +   +   +     + N++   
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAI 257

Query: 302 INPNWVPPFQLTGL 315
            + ++ PP   T  
Sbjct: 258 GSNDFCPPGYNTKK 271

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 6e-10
 Identities = 47/271 (17%), Positives = 89/271 (32%), Gaps = 22/271 (8%)

Query: 10  SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKL 69
            +   LDL   N K+          L  L  L + +  +SK S        L  L+ L L
Sbjct: 31  PDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLERLYL 86

Query: 70  SFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGW 129
           S  +L   P         L   +    + +  + + L  +  +  L  +  + + +  G 
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGA 145

Query: 130 LSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSF 189
              +  L ++ +       NI+++      S+  L L GN ++      S      L   
Sbjct: 146 FQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKL 200

Query: 190 STGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSN--- 246
              F ++S   +  L          L  L L + ++   +   L   K +  + L N   
Sbjct: 201 GLSFNSISAVDNGSLANTP-----HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254

Query: 247 ---TTMDGSIPLSLGQIANLEYLDLSKNELN 274
               + D   P    + A+   + L  N + 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 16/243 (6%)

Query: 309 PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISG 368
           P     L +++ ++        ++ K L+ L + + +IS   P  F   + +   L +S 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSK 88

Query: 369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF 428
           NQ+     K       L  +   I  +  +  +G    ++ +                  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP----------LKS 138

Query: 429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT 488
           SG     +    +L  + + + N T    +  G   SL  L+L  N+++ +   S     
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 489 ILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548
            L  L +  N +       +      L  L+L +NK     P  L     +Q++ +  NN
Sbjct: 196 NLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 253

Query: 549 LSG 551
           +S 
Sbjct: 254 ISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 47/268 (17%), Positives = 79/268 (29%), Gaps = 22/268 (8%)

Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
              LDL N  +          + NL  L L  N+++       F  L KL     + N L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQL 91

Query: 299 IFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSI 358
                       +L        ++       L     + +L  +  + S      F   +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG-M 149

Query: 359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNI 418
            +  ++ I+   +            P +T L     L  N ++      +        N+
Sbjct: 150 KKLSYIRIADTNI----TTIPQGLPPSLTEL----HLDGNKITKVDAASLKG----LNNL 197

Query: 419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478
               LS N  S        N P LR L+L NN      P  +     +  + L NN +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA 256

Query: 479 IIPTSFN------NFTILEALDMGENEL 500
           I    F              + +  N +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 24/189 (12%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFK-------------------LHADTISWLSGLSLLKHL 41
           + P     L  L+ L LS    K                   +     S  +GL+ +  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 42  YISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ 101
            + +  L  +         +  L  ++++   +   P        SLT L L  N+    
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKV 186

Query: 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161
             + L  L +L  L LSFN  ++V  G L+    L  L L +N+L      L   +   I
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYI 244

Query: 162 QTLLLSGND 170
           Q + L  N+
Sbjct: 245 QVVYLHNNN 253

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (152), Expect = 5e-11
 Identities = 51/446 (11%), Positives = 98/446 (21%), Gaps = 22/446 (4%)

Query: 87  SLTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFN----SVVPGWLSKLNDLEFLSL 141
            + +LD+   E      + L   L   + + L            +   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 142 QSNRLQG----NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
           +SN L       +          IQ L L      G            L +      + +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL 257
                 L +    + +    L+    +              +         +  S     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 258 GQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV 317
                +    L  +       ++    +T        G                  G   
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 318 RSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPK 377
            +           + +         + +    + R                     G   
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 378 FDSPSMPLVTNLGSIFDLSN----NALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP 433
                +     L S++  S        S     L          I   +L          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 434 DCWMNWPRLRMLNLRNNNFTG----SLPMSIGTLSSLMSLNLRNNRLSGIIPTSF----- 484
                   LR+L L + + +     SL  ++    SL  L+L NN L             
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 485 NNFTILEALDMGENELVGNIPTWMGE 510
               +LE L + +      +   +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 44/444 (9%), Positives = 113/444 (25%), Gaps = 21/444 (4%)

Query: 135 DLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN---DELGGKIPTSFGRFCKLKSFST 191
           D++ L +Q   L     +  L  L   Q + L      +     I ++      L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFLDLSNTTMD 250
               L       +       + +++ L L +C + G          + L  L   + + +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 251 GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF 310
                 L  +         + E              + +           ++  +     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 311 QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQ 370
           +     +          L     +       +   +   +  +            +    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 371 MYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430
           M    P    PS  L T       ++          L  +      ++   +L       
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTS------- 483
                     +L  L +++ +FT +      ++ +     L     +  +  +       
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 484 --FNNFTILEALDMGENELVGNIPTWMGERFSR---LIILNLRSNKFHGDFPIQLCR--- 535
                 ++L  L + + ++  +  + +         L  L+L +N       +QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 536 --LASLQILDVAYNNLSGTIPRCI 557
                L+ L +     S  +   +
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 44/454 (9%), Positives = 89/454 (19%), Gaps = 30/454 (6%)

Query: 262 NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL----------IFKINPNWVPPFQ 311
           +++ LD+   EL+          L +    R +   L            ++NP       
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA------ 56

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
           L  L +RS  LG      +    +     I    +           +       +   Q 
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 116

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE 431
                   S ++     L  + +   +         +      + + E            
Sbjct: 117 LHL-----SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE 491
                 N                  P  +  L         +N        +        
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 492 ALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551
           AL   +   VG      G       +  L   +              L+  +        
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 552 TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGID 611
                      +  T                                    +   +    
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 612 ISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFSANQLSG 667
           +                  L+ L  +    +      +   +    S+  LD S N L  
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 668 YIPQSMS-----NLSFLNYLNLSNNNLNGEIPSS 696
                +          L  L L +   + E+   
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 11 NLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL--VINSLPSLKELK 68
          ++Q LD+        A     L  L   + + +    L++A    +   +   P+L EL 
Sbjct: 3  DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 69 LSFCKL-----HHFPPLSSANFSSLTTLDLS 94
          L   +L     H            +  L L 
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 604 LNLVRGIDISKNNFSGEVPVEV-TNLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESL 658
           L++ + +DI     S     E+   LQ  Q +       T      I   + V  ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 659 DFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691
           +  +N+L       +          +   +L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 415 SKNIEFFQLSKNHFSGE-IPDCWMNWPRLRMLNLRNNNFTG----SLPMSIGTLSSLMSL 469
           S +I+   +     S     +      + +++ L +   T      +  ++    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 470 NLRNNRLSGIIPTSF-----NNFTILEALDM 495
           NLR+N L  +               ++ L +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 9/88 (10%)

Query: 75  HHFPPLSSANFSSLTTLDLSENEFQGQ----IPSRLGNLTSLKYLDLSFNQFNSVVPGWL 130
                      S L  L L++ +        + + L    SL+ LDLS N         L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 131 SK-----LNDLEFLSLQSNRLQGNISSL 153
            +        LE L L        +   
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 10/274 (3%)

Query: 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNI 504
            +        ++P+ I    +   + L  NR+S +   SF     L  L +  N L    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 505 PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA 564
                       +    + +     P     L  L  L +    L    P      +A+ 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMK----GFLVEYKSILNLVRGIDISKNNFSGE 620
                D +          +      L +               L+ +  + + +N  +  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLN 680
            P    +L  L +L    N  +    + +  +R+++ L  + N       ++    ++L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQ 251

Query: 681 YLNLSNNNLNGEIPSSTQLQSFGGSSFADNDLCG 714
               S++ +   +P     +       A NDL G
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 8/256 (3%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
              + + L  N  +     S     +L  L L +N L+ I   +F    +LE LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559
            + ++         RL  L+L         P     LA+LQ L +  N L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 560 FSAMATTD-SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSI---LNLVRGIDISKN 615
              +       ++ + +   +      ++  LL        +      L  +  + +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 616 NFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN 675
           N S      +  L+ LQ L  + N +         +   ++    S++++   +PQ ++ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 676 LSFLNYLNLSNNNLNG 691
                   L+ N+L G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 8e-10
 Identities = 41/277 (14%), Positives = 89/277 (32%), Gaps = 19/277 (6%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
           ++P+ +   A  + + L  N ++   +   F     L     + N L       +     
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 312 LTGLGVRSCR-LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQ 370
           L  L +     L    P       +L+ L++    +  ++    +  +    +L +  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 371 MYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430
           +             L         L  N +S               +++   L +N  + 
Sbjct: 141 LQALPDDTFRDLGNLTH-----LFLHGNRISSVPERAFRG----LHSLDRLLLHQNRVAH 191

Query: 431 EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTIL 490
             P  + +  RL  L L  NN +     ++  L +L  L L +N        +   +  L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWL 250

Query: 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG 527
           +      +E+  ++P    +R +   +  L +N   G
Sbjct: 251 QKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 50/267 (18%), Positives = 81/267 (30%), Gaps = 16/267 (5%)

Query: 10  SNLQYLDLSGYNFK-LHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
           +  Q + L G     + A +      L++L         +  A+            +   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF----TGLALLEQLDL 87

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
               +L    P +      L TL L     Q   P     L +L+YL L  N   ++   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188
               L +L  L L  NR+           L S+  LLL  N       P +F    +   
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGR--- 202

Query: 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTT 248
                  L  +    L   +      L+ L L               +  L     S++ 
Sbjct: 203 --LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSE 259

Query: 249 MDGSIPLSLGQIANLEYLDLSKNELNG 275
           +  S+P  L   A  +   L+ N+L G
Sbjct: 260 VPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 7/180 (3%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
           + P     L  L  L L                GL+ L++LY+    L    D       
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDD--TFRD 151

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
           L +L  L L   ++   P  +     SL  L L +N      P    +L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
             +++    L+ L  L++L L  N    +  +  L     +Q    S + E+   +P   
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSS-EVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 40/239 (16%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464
                     +   +             P  +    RL  L+L         P     L+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK 524
           +L  L L++N L  +   +F +   L  L +  N +   +P         L  L L  N+
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNR 188

Query: 525 FHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEK 584
                P     L  L  L +  NNLS      +    A+                L D  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR------------LNDNP 236

Query: 585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTG 643
            V D            + +   ++    S +     +P     L G      + N   G
Sbjct: 237 WVCDCRA---------RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 46/256 (17%), Positives = 77/256 (30%), Gaps = 10/256 (3%)

Query: 45  SVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPS 104
           + +  +     + +    + + + L   ++ H P  S     +LT L L  N       +
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 105 RLGNLTSLKYLDLSFNQFNSVV-PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQT 163
               L  L+ LDLS N     V P     L  L  L L        +       L ++Q 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQY 133

Query: 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSC 223
           L L  N  L      +F     L         +S               + L+ L L   
Sbjct: 134 LYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-----RGLHSLDRLLLHQN 187

Query: 224 QIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV 283
           ++     +       L  L L    +      +L  +  L+YL L+ N            
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL- 246

Query: 284 NLTKLVTFRANGNSLI 299
               L  FR + + + 
Sbjct: 247 -WAWLQKFRGSSSEVP 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 37/271 (13%), Positives = 78/271 (28%), Gaps = 7/271 (2%)

Query: 217 SLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGT 276
           +LDL    +   +T +L   +G+       + MD  +         ++++DLS + +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVS 61

Query: 277 VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKL 336
                    +KL      G  L   I         L  L +  C     F          
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSC 120

Query: 337 NDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLS 396
           + L   +         +       +    I+   + G         +  +          
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 397 NNALSGSIFHLICQGENFSKNIEFFQLSK-NHFSGEIPDCWMNWPRLRMLNLRNNNFTGS 455
           + + S  + +   Q       ++   LS+      E        P L+ L +      G+
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 456 LPMSIGTLSSLMSLNLRNNRLSGIIPTSFNN 486
           L +      +L  L +  +  + I   +  N
Sbjct: 241 LQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 46/256 (17%), Positives = 76/256 (29%), Gaps = 10/256 (3%)

Query: 13  QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC 72
           Q LDL+G N  LH D    L    ++          S     L    S   ++ + LS  
Sbjct: 3   QTLDLTGKN--LHPDVTGRLLSQGVI----AFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 73  KLHHFPPLS-SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS--FNQFNSVVPGW 129
            +         +  S L  L L        I + L   ++L  L+LS         +   
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 130 LSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSF 189
           LS  + L+ L+L                  S     L+ +        +      +    
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 190 STGFTNLSQDISEILGIFSACVANELESLDLGSC-QIFGHMTNQLGRFKGLNFLDLSNTT 248
                     + +          N L+ L L  C  I      +LG    L  L +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 249 MDGSIPLSLGQIANLE 264
            DG++ L    + +L+
Sbjct: 237 PDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 8/248 (3%)

Query: 37  LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN 96
           L + L ++  NL       L+   + + +  +    +    P     +   +  +DLS +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ----PLAEHFSPFRVQHMDLSNS 56

Query: 97  EFQG-QIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR-LQGNISSLG 154
             +   +   L   + L+ L L   + +  +   L+K ++L  L+L              
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 155 LENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANE 214
           L + + +  L LS   +   K                  +   +++ +            
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 215 LESLDLGSCQIF-GHMTNQLGRFKGLNFLDLSN-TTMDGSIPLSLGQIANLEYLDLSKNE 272
           L  LDL    +       +  +   L  L LS    +     L LG+I  L+ L +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 273 LNGTVSEI 280
            +GT+  +
Sbjct: 237 PDGTLQLL 244

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 7/234 (2%)

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFN-SV 125
           L L+   LH            +       +     +     +   ++++DLS +    S 
Sbjct: 5   LDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 126 VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCK 185
           + G LS+ + L+ LSL+  RL   I +  L   +++  L LSG          +    C 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 186 LKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF---L 242
                            +    +       +    G  +            +  N     
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 243 DLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
              +  +         Q+  L++L LS+       + +    +  L T +  G 
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665
           L + +D++  N   +V   + + QG+ +     +     + ++    R ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 666 SGY-IPQSMSNLSFLNYLNLSNNNLNGEIPSS 696
               +   +S  S L  L+L    L+  I ++
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
            L++N                  ++   +L +N  +G  P+ +     ++ L L  N   
Sbjct: 35  LLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513
                    L  L +LNL +N++S ++P SF +   L +L++  N    N        + 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151

Query: 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549
           R    +L         P    ++  +QI D+ ++  
Sbjct: 152 RK--KSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 41/333 (12%), Positives = 87/333 (26%), Gaps = 15/333 (4%)

Query: 209 ACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268
            C+  +   L+L +  +    ++       L  L  S  ++   +P     + +L   + 
Sbjct: 34  DCLDRQAHELELNNLGL----SSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 88

Query: 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL 328
           +   L+     + ++ ++     +         +    V    L  L      L      
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 329 WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTN 388
             Q ++      +                      L              +  ++P +T 
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLR 448
           + +  +L                 +              F     + +     L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 449 NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM 508
            N  +  +        SL  LN+ NN+L   +P        LE L    N L   +P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-AEVPELP 323

Query: 509 GERFSRLIILNLRSNKFHGDFPIQLCRLASLQI 541
                 L  L++  N     FP     +  L++
Sbjct: 324 Q----NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 69  LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
                  +          SL  L++S N+   ++P+       L+ L  SFN     VP 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE 321

Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLG-LENL 158
                  L+ L ++ N L+        +E+L
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 1   MIPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS 60
            I        +L+ L++S              +    L+ L  S  +L++      V   
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI------ELPALPPRLERLIASFNHLAE------VPEL 322

Query: 61  LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
             +LK+L + +  L  FP +      S+  L ++
Sbjct: 323 PQNLKQLHVEYNPLREFPDI----PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 49/355 (13%), Positives = 93/355 (26%), Gaps = 46/355 (12%)

Query: 134 NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGF 193
                L L +  L    SSL  E    +++L+ S N                L       
Sbjct: 38  RQAHELELNNLGL----SSLP-ELPPHLESLVASCN---------------SLTELPELP 77

Query: 194 TNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSI 253
            +L   + +   + +      L      S      +                   +D   
Sbjct: 78  QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS--------FLKIIDVDN 129

Query: 254 PLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLT 313
                       L+      N         NL  L    A+ NSL    +        + 
Sbjct: 130 NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 189

Query: 314 GLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYG 373
           G  +       +   +L +    N+L  +   +   +        +      +  +  + 
Sbjct: 190 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 249

Query: 374 GVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP 433
            V +     +  +       + S+N +                ++E   +S N    E+P
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP--------PSLEELNVSNNKLI-ELP 300

Query: 434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI--IPTSFNN 486
                 PRL  L    N+    +P       +L  L++  N L     IP S  +
Sbjct: 301 AL---PPRLERLIASFNHLA-EVP---ELPQNLKQLHVEYNPLREFPDIPESVED 348

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 29/205 (14%), Positives = 48/205 (23%), Gaps = 18/205 (8%)

Query: 84  NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143
             +S   ++  +      +P  L        L LS N   +     L     L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI 203
             L        L  L ++                        +         L       
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 204 LGIFSACVANELESLDLGSCQIFGHMT--------------NQLGRFKGLNFLDLSNTTM 249
                    NEL++L  G       +                 L   + L+ L L   ++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 250 DGSIPLSLGQIANLEYLDLSKNELN 274
             +IP        L +  L  N   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 14/190 (7%)

Query: 309 PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISG 368
           P   T L +    L       L    +L  L +    ++          +      +   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF 428
             +        + ++  V+                +  L          ++   L  N  
Sbjct: 90  QSLPLLGQTLPALTVLDVSF-------------NRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT 488
               P      P+L  L+L NNN T      +  L +L +L L+ N L   IP  F    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 489 ILEALDMGEN 498
           +L    +  N
Sbjct: 196 LLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 624 EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLN 683
           EV+ +     +N      T  +P ++   +    L  S N L  +   ++   + L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 684 LSNNN 688
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 9/168 (5%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
               L   + L  L+L            +       L  L    ++ ++     L+  +L
Sbjct: 47  SLATLMPYTRLTQLNLDRAELTKLQVDGT-------LPVLGTLDLSHNQLQSLPLLGQTL 99

Query: 62  PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
           P+L  L +SF +L   P  +      L  L L  NE +   P  L     L+ L L+ N 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 122 FNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
              +  G L+ L +L+ L LQ N         G      +    L GN
Sbjct: 160 LTELPAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHGN 205

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 40/322 (12%), Positives = 90/322 (27%), Gaps = 21/322 (6%)

Query: 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296
           K L    ++      S+   L +  +++ + LS N +    +     N+           
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN 356
           S IF        P  L  L     +      + L                 +K       
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 357 SIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416
            +        +G ++   + +                    N L         +     +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNL---------RNNNFTGSLPMSIGTLSSLM 467
            +   ++ +N    E  +  +         L           +  + +L +++ +  +L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 468 SLNLRNNRLSGIIPT------SFNNFTILEALDMGENELVGN----IPTWMGERFSRLII 517
            L L +  LS           S      L+ L +  NE+  +    + T + E+   L+ 
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 518 LNLRSNKFHGDFPIQLCRLASL 539
           L L  N+F  +    +  +  +
Sbjct: 307 LELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 32/322 (9%), Positives = 80/322 (24%), Gaps = 24/322 (7%)

Query: 197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF-------KGLNFLDLSNTTM 249
           ++D   +  +      + ++ + L    I       L          +   F D+    +
Sbjct: 17  TEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 74

Query: 250 DGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP 309
              IP +L  +         K                + +    + ++ +  +  +    
Sbjct: 75  KDEIPEALRLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133

Query: 310 FQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGN 369
               G  +             ++   L  +     R+     + +  +   +  L+    
Sbjct: 134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 193

Query: 370 QMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHL---ICQGENFSKNIEFFQLSKN 426
              G  P+     +           + +   +         +        N+    L+  
Sbjct: 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253

Query: 427 HFSGEIPDCWMNW------PRLRMLNLRNNNFTGSLPMSIGT-----LSSLMSLNLRNNR 475
             S       ++         L+ L L+ N        ++ T     +  L+ L L  NR
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 476 LSGIIPTSFNNFTILEALDMGE 497
            S           +      GE
Sbjct: 314 FSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 29/321 (9%), Positives = 84/321 (26%), Gaps = 35/321 (10%)

Query: 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTG----SLPMSIGTLSSLMSLN 470
            K+++   ++       +    +    ++ + L  N         L  +I +   L    
Sbjct: 7   GKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 471 LRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530
             +     +         +L    +   +L     +      +    L    +K      
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 531 IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLG--------- 581
           + L                   +       +A          N +   S+          
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 582 ----------DEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGL 631
                     +    E    ++   L   + +  L    +   +  S  + + + +   L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 632 QSLNFSYNLFTGRIPDNIGVM------RSIESLDFSANQLSGYIPQSM-----SNLSFLN 680
           + L  +  L + R    +           +++L    N++     +++       +  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 681 YLNLSNNNLNGEIPSSTQLQS 701
           +L L+ N  + E     +++ 
Sbjct: 306 FLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 75  HHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-----GNLTSLKYLDLSFNQFNSVVPGW 129
                 S      L TL L  NE +      L       +  L +L+L+ N+F S     
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDV 320

Query: 130 LSKLNDL 136
           + ++ ++
Sbjct: 321 VDEIREV 327

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 13  QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC 72
           + L L+  +       +  L  L L+ HL +S   L     +L  +  L  L+       
Sbjct: 1   RVLHLAHKDLT----VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ-----AS 51

Query: 73  KLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQF 122
                     AN   L  L L  N  Q       L +   L  L+L  N  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
           R+L+L + + T      +  L  +  L+L +NRL  + P        L  L++ +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQ-LCRLASLQILDVAYNNLSG 551
                      RL  L L +N+      IQ L     L +L++  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 90  TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN 149
            L L+  +    +   L  L  + +LDLS N+           L  L  L +        
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNAL 55

Query: 150 ISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFS 208
            +  G+ NL  +Q LLL  N               +L   +    +L Q+      +  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 29/126 (23%), Positives = 40/126 (31%), Gaps = 28/126 (22%)

Query: 65  KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL------------ 112
           + L L+   L     L       +T LDLS N  +   P+ L  L  L            
Sbjct: 1   RVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 113 ----------KYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQG--NISSLGLENLT 159
                     + L L  N+         L     L  L+LQ N L     I     E L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 160 SIQTLL 165
           S+ ++L
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 2   IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
           +   L  L  + +LDLS    +     ++ L  L +L+    +  N+         + +L
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-------VANL 64

Query: 62  PSLKELKLSFCKLHHFPPLSS-ANFSSLTTLDLSEN------EFQGQIPSRLGNLTSL 112
           P L+EL L   +L     +    +   L  L+L  N        Q ++   L +++S+
Sbjct: 65  PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT 453
           DLS+N L              +       L  +  + E  D   N PRL+ L L NN   
Sbjct: 26  DLSHNRLRA-------LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 78

Query: 454 G-SLPMSIGTLSSLMSLNLRNNRLSGI 479
             +    + +   L+ LNL+ N L   
Sbjct: 79  QSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP--------------------- 646
           R + ++  + +  V   +  L  +  L+ S+N      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 647 DNIGVMRSIESLDFSANQLSGY-IPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 701
           D +  +  ++ L    N+L      Q + +   L  LNL  N+L  E     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 30/253 (11%), Positives = 70/253 (27%), Gaps = 23/253 (9%)

Query: 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVG 502
           R+   + +  T  +P  +    + + L     +L  I   +F+ F  LE +++ +N+++ 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSA 562
            I   +     +L  + +           +  +        +  N     +P      S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 563 MATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622
                    + +I                        +  +      + ++KN       
Sbjct: 128 QKVLLDIQDNINIHT-----------------IERNSFVGLSFESVILWLNKNGIQEIHN 170

Query: 623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYL 682
                 Q  +      N       D          LD S  ++       + NL  L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 683 NLSNNNLNGEIPS 695
           +  N     ++P+
Sbjct: 231 STYN---LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 9/224 (4%)

Query: 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ 311
            IP  L    N   L     +L   + +  F     L     + N ++  I  +      
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 312 LTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQM 371
                 +   +       L          + + +          +    +   ++    +
Sbjct: 79  ------KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 372 YGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE 431
                              S   +        I  +     N ++  E      N+    
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR 475
             D +       +L++            +  L  L + +  N +
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 11/79 (13%), Positives = 22/79 (27%)

Query: 67  LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVV 126
           L L+   +      +              N  +          +    LD+S  + +S+ 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 127 PGWLSKLNDLEFLSLQSNR 145
              L  L  L   S  + +
Sbjct: 218 SYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 25/235 (10%), Positives = 51/235 (21%), Gaps = 7/235 (2%)

Query: 63  SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
           S +       K+   P   S    +   L     + +            L+ +++S N  
Sbjct: 9   SNRVFLCQESKVTEIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
             V+   +                     +            LL  N  +          
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 183 FCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFL 242
             +              I          ++ E   L L    I           +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 243 DLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNS 297
              N  ++          +    LD+S+  ++ ++      NL KL         
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 13/91 (14%), Positives = 21/91 (23%)

Query: 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464
                     S       L+KN         +       +    NNN            S
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201

Query: 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495
             + L++   R+  +      N   L A   
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 37/241 (15%)

Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
            +AN   +   K+ +  TV++     +T L                         G GV 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTL----------------------SAFGTGVT 54

Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
           +          +Q    L  L +   +I+   P +    I +          +       
Sbjct: 55  TIE-------GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 379 DSPSMPLVTNLGS----IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPD 434
              ++ L +   +    +  LSN  +     + I      +       LS  +       
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494
              N  +L  L   +N  +   P  + +L +L+ ++L+NN++S + P    N + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 495 M 495
           +
Sbjct: 224 L 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 17/225 (7%)

Query: 463 LSSLMSLNLRNNRLSGIIPTS-FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521
           L++ + +    + ++  +  +  +  T L A   G   + G       +  + LI L L+
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG------VQYLNNLIGLELK 71

Query: 522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLG 581
            N+     P++     +   L                     +       S  I   +  
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLK------NVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 582 DEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLF 641
                   L +    +     +  L     +S  N        + NL  L +L    N  
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 642 TGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686
           +   P  +  + ++  +    NQ+S   P  ++N S L  + L+N
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 70  SFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGW 129
           S            AN S LTTL   +N+     P  L +L +L  + L  NQ + V P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212

Query: 130 LSKLNDLEFLSL 141
           L+  ++L  ++L
Sbjct: 213 LANTSNLFIVTL 224

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 6/126 (4%)

Query: 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK-NHFSGEIPDCWMNWPRLRMLNL 447
           +   +D S  AL            +         L++ +  +  +     N P L  LNL
Sbjct: 16  MSKRYDGSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNL 72

Query: 448 RNNNFTG--SLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505
            NN       +   +    +L  LNL  N L             LE L +  N L     
Sbjct: 73  SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

Query: 506 TWMGER 511
                 
Sbjct: 133 DQSTYI 138

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499
              + L+L+       L       +  + LN R++  +  +     N   L +L++  N 
Sbjct: 22  GSQQALDLKGLRSDPDL----VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 500 LVGNIP-TWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN 558
           L      + + ++   L ILNL  N+   +  +   +   L+ L +  N+LS T      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 559 NFSAM 563
             SA+
Sbjct: 137 YISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 7/120 (5%)

Query: 4   HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPS 63
               +L       +      + A        +  L  L +S+  L +  D   ++   P+
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPN 92

Query: 64  LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSR-------LGNLTSLKYLD 116
           LK L LS  +L     L       L  L L  N        +             L  LD
Sbjct: 93  LKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 58  INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYL 115
           + +      L            +   N   L +L+LS N       + S +    +LK L
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96

Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS 152
           +LS N+  S       K   LE L L  N L      
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGE 497
           N  R R L+LR       +     TL    +++  +N +  +          L+ L +  
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72

Query: 498 NELVGNIPTWM 508
           N +        
Sbjct: 73  NRICRIGEGLD 83

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 15/190 (7%)

Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQTLLL 166
            L       L        V    + L+ +  L          I S+ G+E L ++  +  
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINF 69

Query: 167 SGNDELG----GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGS 222
           S N          +             +      +      L +F+  + +     +L +
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS----LGQIANLEYLDLSKNELNGTVS 278
                  +N +     L+ L         S  ++    L  +  LE LD+S N+++    
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 279 EIHFVNLTKL 288
                NL  L
Sbjct: 190 LAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 13/189 (6%)

Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS 167
                   +L        V    ++LN ++ +   ++ ++   S  G++ L ++  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 168 GNDELG----GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSC 223
           GN          +      F          +       + L +    +++    + L   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 224 QIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPL----SLGQIANLEYLDLSKNELNGTVSE 279
           +      N++     L+ L   +T       +     L  +  L+ L LSKN ++   + 
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 280 IHFVNLTKL 288
               NL  L
Sbjct: 197 AGLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 13/193 (6%)

Query: 84  NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143
            F+     +L +      +      L S+  +  + +   SV    +  L ++  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEI 203
           N+L        L+NL  +        D    K            +  +    L       
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 204 LGIFSACVANELESLDLGSCQIFGHMTNQ-------LGRFKGLNFLDLSNTTMDGSIPLS 256
                     ++  L   +      + +        L     L  L LS   +   +  +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-A 195

Query: 257 LGQIANLEYLDLS 269
           L  + NL+ L+L 
Sbjct: 196 LAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	793
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.5e-34  Score=293.57  Aligned_cols=260  Identities=30%  Similarity=0.553  Sum_probs=239.9

Q ss_pred             CCCccEEEccCCcccc--cCCCCccCCCCCCEEEccC-CcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCC
Q 003813          415 SKNIEFFQLSKNHFSG--EIPDCWMNWPRLRMLNLRN-NNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE  491 (793)
Q Consensus       415 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  491 (793)
                      ..+++.|+|++|.+++  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3478999999999987  5789999999999999997 899999999999999999999999999999999999999999


Q ss_pred             EEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCc-CEEEcccCccccccCccccccccCccccCCC
Q 003813          492 ALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASL-QILDVAYNNLSGTIPRCINNFSAMATTDSSD  570 (793)
Q Consensus       492 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  570 (793)
                      .+++++|.+.+.+|..+. .++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..        
T Consensus       129 ~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--------  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--------  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--------
T ss_pred             ccccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            999999999999999887 79999999999999999999999888886 89999999999988877665432        


Q ss_pred             CCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcccc
Q 003813          571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG  650 (793)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  650 (793)
                                                           ..++++++.+.+.+|..+..+++|+.+++++|.+++.+| .++
T Consensus       200 -------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~  241 (313)
T d1ogqa_         200 -------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG  241 (313)
T ss_dssp             -------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC
T ss_pred             -------------------------------------ccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                                                 468999999999999999999999999999999997766 589


Q ss_pred             CcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCCCCCC
Q 003813          651 VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLPNCT  721 (793)
Q Consensus       651 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c~  721 (793)
                      .+++|+.|+|++|+++|.+|..|+++++|++|||++|+|+|.+|....+..+....+.|| .+||.|++.|+
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999999999999999999999999999999999888888999999999 79999988774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=7.7e-31  Score=271.14  Aligned_cols=253  Identities=26%  Similarity=0.428  Sum_probs=222.2

Q ss_pred             CcEEEcccCcccc--cccchhhcccCCCCCccEEEccC-CcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCc
Q 003813          390 GSIFDLSNNALSG--SIFHLICQGENFSKNIEFFQLSK-NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSL  466 (793)
Q Consensus       390 l~~l~ls~n~l~~--~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  466 (793)
                      ++.++++++.+.|  .+|..    ++.+++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|
T Consensus        52 v~~L~L~~~~l~g~~~lp~~----l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEECCCCCCCCCCCCChH----HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            4555666666655  24444    34489999999997 89999999999999999999999999999999999999999


Q ss_pred             cEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccC-cEEEccCccccccCCccccCCCCcCEEEcc
Q 003813          467 MSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRL-IILNLRSNKFHGDFPIQLCRLASLQILDVA  545 (793)
Q Consensus       467 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  545 (793)
                      +++++++|.+.+.+|..+.+++.++.+++++|.+.+.+|..+. .+..+ +.+++++|++++..|..+..+..+ .++++
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccccc-ccccc
Confidence            9999999999999999999999999999999999999999888 46554 899999999999999888877654 79999


Q ss_pred             cCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccc
Q 003813          546 YNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV  625 (793)
Q Consensus       546 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~  625 (793)
                      ++...+.+|..+..++.+                                            +.+++++|.+++.+| .+
T Consensus       206 ~~~~~~~~~~~~~~~~~l--------------------------------------------~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNT--------------------------------------------QKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             SSEEEECCGGGCCTTSCC--------------------------------------------SEEECCSSEECCBGG-GC
T ss_pred             cccccccccccccccccc--------------------------------------------ccccccccccccccc-cc
Confidence            999999888877665554                                            789999999997765 68


Q ss_pred             ccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc-cccc-CC
Q 003813          626 TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN-LNGE-IP  694 (793)
Q Consensus       626 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~-ip  694 (793)
                      +.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+++|.+|+ +.++++|+.+++++|+ ++|. +|
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            8999999999999999999999999999999999999999999995 6889999999999998 5653 45

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.7e-26  Score=246.28  Aligned_cols=340  Identities=23%  Similarity=0.298  Sum_probs=212.7

Q ss_pred             CCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEE
Q 003813          213 NELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR  292 (793)
Q Consensus       213 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  292 (793)
                      .+|++|+++++.|+..  +.++.+++|++|++++|++++..  .++++++|++|++++|++.+ ++  .++++++|+.++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc-cc--cccccccccccc
Confidence            5677777777766542  34666777777777777777543  26777777777777777763 22  256666666666


Q ss_pred             CCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc
Q 003813          293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY  372 (793)
Q Consensus       293 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~  372 (793)
                      ++++.+.+...                          ......+.......+.+....+.... .........       
T Consensus       117 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-------  162 (384)
T d2omza2         117 LFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISDISALSGL-TSLQQLSFG-------  162 (384)
T ss_dssp             CCSSCCCCCGG--------------------------GTTCTTCSEEEEEEEEECCCGGGTTC-TTCSEEEEE-------
T ss_pred             ccccccccccc--------------------------cccccccccccccccccccccccccc-ccccccccc-------
Confidence            66665543211                          11222333333333333221111000 000000000       


Q ss_pred             ccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcc
Q 003813          373 GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF  452 (793)
Q Consensus       373 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  452 (793)
                                            ......         ..+...+.........|...  ....+..+++++.+++++|.+
T Consensus       163 ----------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         163 ----------------------NQVTDL---------KPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             ----------------------ESCCCC---------GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred             ----------------------cccchh---------hhhccccccccccccccccc--cccccccccccceeeccCCcc
Confidence                                  000000         01111233344444444333  234556677788888888887


Q ss_pred             cccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCcc
Q 003813          453 TGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ  532 (793)
Q Consensus       453 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  532 (793)
                      ++..|  +..+++|++|++++|+++..  ..+..+++|+.|++++|++++ ++. +. .+++|++|++++|++++..  .
T Consensus       210 ~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~l~~~~l~~~~--~  280 (384)
T d2omza2         210 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELKLGANQISNIS--P  280 (384)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCCCCG--G
T ss_pred             CCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc-cc-ccccCCEeeccCcccCCCC--c
Confidence            75544  45567788888888887753  356778888888888888774 333 22 5778888888888887543  3


Q ss_pred             ccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc
Q 003813          533 LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI  612 (793)
Q Consensus       533 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  612 (793)
                      +..++.++.+++++|.+.+.  ..+..                                            ++.++.|++
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~--~~~~~--------------------------------------------~~~l~~L~l  314 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDI--SPISN--------------------------------------------LKNLTYLTL  314 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCC--GGGGG--------------------------------------------CTTCSEEEC
T ss_pred             cccccccccccccccccccc--cccch--------------------------------------------hcccCeEEC
Confidence            66778888888888887642  12222                                            334578899


Q ss_pred             ccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813          613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN  687 (793)
Q Consensus       613 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  687 (793)
                      ++|++++..  .+..+++|++|++++|+++ .+| .++++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999988643  3788999999999999998 455 58999999999999999997655  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.3e-26  Score=241.84  Aligned_cols=235  Identities=24%  Similarity=0.319  Sum_probs=157.1

Q ss_pred             CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813           33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL  112 (793)
Q Consensus        33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  112 (793)
                      +.+.+|++|++++++|++++.    +..+++|++|++++|+++++++  ++++++|++|++++|.+.+..  .++.+++|
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~g----l~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred             HHhCCCCEEECCCCCCCCccc----cccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccccc
Confidence            456788889999888887643    5678889999999998888864  888889999999999888543  37888899


Q ss_pred             CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813          113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG  192 (793)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~  192 (793)
                      +.|++++|.+++..+  ......+.......|.+. .+..................      .....+............
T Consensus       113 ~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  183 (384)
T d2omza2         113 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQV------TDLKPLANLTTLERLDIS  183 (384)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEESC------CCCGGGTTCTTCCEEECC
T ss_pred             ccccccccccccccc--cccccccccccccccccc-cccccccccccccccccccc------chhhhhcccccccccccc
Confidence            999998888877533  345567777777777665 22221111122222221111      122334444444444444


Q ss_pred             CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC
Q 003813          193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE  272 (793)
Q Consensus       193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  272 (793)
                      .+....  ......+     ++++.+++++|.+.+..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.
T Consensus       184 ~~~~~~--~~~~~~l-----~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         184 SNKVSD--ISVLAKL-----TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ  252 (384)
T ss_dssp             SSCCCC--CGGGGGC-----TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             cccccc--ccccccc-----cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCc
Confidence            443332  2223333     788889999888876654  45668899999999988853  367888999999999998


Q ss_pred             CccccChhhhhcCCCCcEEECCCCee
Q 003813          273 LNGTVSEIHFVNLTKLVTFRANGNSL  298 (793)
Q Consensus       273 l~~~~~~~~~~~l~~L~~L~l~~n~l  298 (793)
                      +++..   .+..+++|++++++++++
T Consensus       253 l~~~~---~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         253 ISNLA---PLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             CCCCG---GGTTCTTCSEEECCSSCC
T ss_pred             cCCCC---cccccccCCEeeccCccc
Confidence            87432   356667777777666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-26  Score=230.55  Aligned_cols=233  Identities=20%  Similarity=0.199  Sum_probs=177.2

Q ss_pred             EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC-CCc
Q 003813          421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG-ENE  499 (793)
Q Consensus       421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~  499 (793)
                      ++.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++.++.+..+.+++.++.++.. .|.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            455555555 3454432  456777777777776666667777777777777777777777777777777777654 344


Q ss_pred             ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813          500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      +. .++...+.++++|++|++++|.+.+..+..+...++|+.+++++|++++..+..+..++.                 
T Consensus        93 ~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-----------------  154 (284)
T d1ozna_          93 LR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-----------------  154 (284)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             cc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc-----------------
Confidence            44 454444446777888888887777666667777788888888888887555555554444                 


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD  659 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  659 (793)
                                                 ++.|++++|++++..+..|.++++|+.+++++|++++..|..|.++++|+.||
T Consensus       155 ---------------------------L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         155 ---------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             ---------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ---------------------------hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence                                       37788888888888888999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCC
Q 003813          660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS  701 (793)
Q Consensus       660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  701 (793)
                      +++|++++..|..|..+++|++|++++|++.|.|+..+...+
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~  249 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCCccchHHHHH
Confidence            999999999999999999999999999999999886543333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.9e-24  Score=216.82  Aligned_cols=283  Identities=20%  Similarity=0.220  Sum_probs=196.0

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD  116 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  116 (793)
                      ..+.++.++.+++.+|..   +  .+++++|++++|+|+.+++.+|.++++|++|++++|.+....|.+|.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~---l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD---L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS---C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCccCCC---C--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            556677777777776542   2  25677888888888887777777888888888888888766677778888888888


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCC-CCCCCcccccCCCCCcEEEccCCc
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDE-LGGKIPTSFGRFCKLKSFSTGFTN  195 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~l~~l~~L~~L~l~~n~  195 (793)
                      +++|+++.+ |..  ....++.|++.+|.+. .++...+.....++.++...|.. .....+..+..+++|+.++++.|.
T Consensus        86 l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLKEL-PEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCSBC-CSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccCcC-ccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            888877763 332  2356777888888777 56666577777777777777642 223445566777777777777776


Q ss_pred             ccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 003813          196 LSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG  275 (793)
Q Consensus       196 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  275 (793)
                      ++. ++..       .+++|++|++++|...+..+..+..++.+++|++++|.+++..+.++.++++|++|+|++|.++ 
T Consensus       162 l~~-l~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         162 ITT-IPQG-------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             CCS-CCSS-------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             ccc-cCcc-------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-
Confidence            653 2221       1267888888888888887888888888888888888888777788888888888888888886 


Q ss_pred             ccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccc-cccChhH
Q 003813          276 TVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS-AKIPRRF  354 (793)
Q Consensus       276 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~~  354 (793)
                      .+|. .+.++++|++|++++|+++......|..                  +.......+|+.|++++|.+. ..++...
T Consensus       233 ~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~------------------~~~~~~~~~L~~L~L~~N~~~~~~~~~~~  293 (305)
T d1xkua_         233 KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP------------------PGYNTKKASYSGVSLFSNPVQYWEIQPST  293 (305)
T ss_dssp             SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSC------------------SSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             cccc-ccccccCCCEEECCCCccCccChhhccC------------------cchhcccCCCCEEECCCCcCccCcCCHhH
Confidence            5665 6778888888888888776543333321                  122334456666677666653 2344444


Q ss_pred             Hh
Q 003813          355 WN  356 (793)
Q Consensus       355 ~~  356 (793)
                      +.
T Consensus       294 f~  295 (305)
T d1xkua_         294 FR  295 (305)
T ss_dssp             GT
T ss_pred             hc
Confidence            43

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-25  Score=224.57  Aligned_cols=252  Identities=17%  Similarity=0.178  Sum_probs=210.4

Q ss_pred             EEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEc
Q 003813          392 IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL  471 (793)
Q Consensus       392 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  471 (793)
                      .++.++++++ .+|..+      .+++++|+|++|++++..+.+|.++++|++|++++|++.+..+..+..+..++.++.
T Consensus        15 ~v~c~~~~L~-~iP~~i------p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (284)
T ss_dssp             EEECCSSCCS-SCCTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEEcCCCCCC-ccCCCC------CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccc
Confidence            3455555554 334322      367899999999999888889999999999999999999998989999999999876


Q ss_pred             c-CCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813          472 R-NNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS  550 (793)
Q Consensus       472 ~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (793)
                      . .|.++...+..|.++++|++|++++|.+. .++...+...++|+.+++++|++++..+..|..+++|+.|++++|+++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            5 66788777899999999999999999997 455545547889999999999999777788999999999999999998


Q ss_pred             cccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccC
Q 003813          551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG  630 (793)
Q Consensus       551 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  630 (793)
                      +..+..+.++++|                                            +.+++++|++++..|..|.++++
T Consensus       167 ~l~~~~f~~l~~L--------------------------------------------~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         167 SVPERAFRGLHSL--------------------------------------------DRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             EECTTTTTTCTTC--------------------------------------------CEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccchhhhcccccc--------------------------------------------chhhhhhccccccChhHhhhhhh
Confidence            7777777666555                                            78999999999999999999999


Q ss_pred             CceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813          631 LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS  696 (793)
Q Consensus       631 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  696 (793)
                      |++||+++|++++..|+.|+++++|+.|++++|.+.+.-+. -.-...++.+....+++.|..|..
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchH
Confidence            99999999999998889999999999999999999865332 111234566777888898887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-24  Score=214.56  Aligned_cols=206  Identities=20%  Similarity=0.255  Sum_probs=158.8

Q ss_pred             CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcE
Q 003813          438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLII  517 (793)
Q Consensus       438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~  517 (793)
                      +..++.+++.++++++ .+|..+.  +++++|+|++|+|+++.+..|.++++|++|+|++|+++ .+|..  ..+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccc
Confidence            3445556677777776 4565543  46777777777777666667777777777777777776 55543  24777888


Q ss_pred             EEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccch
Q 003813          518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL  597 (793)
Q Consensus       518 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (793)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.                                    
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------------------------------  124 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------------------------  124 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccceeecccccccc------------------------------------
Confidence            8888888773 456677788888888888887754444443333                                    


Q ss_pred             hhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCC
Q 003813          598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS  677 (793)
Q Consensus       598 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  677 (793)
                              .++.|++++|.+++..+..+..+++|+.|++++|++++..++.|+.+++|++|||++|+|+ .+|..+..++
T Consensus       125 --------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         125 --------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             --------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             --------ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                    3477888888888777778889999999999999999888888999999999999999999 7888888999


Q ss_pred             CCCeEEcccCcccccCCC
Q 003813          678 FLNYLNLSNNNLNGEIPS  695 (793)
Q Consensus       678 ~L~~L~ls~N~l~g~ip~  695 (793)
                      +|++|+|++|++.|.|..
T Consensus       196 ~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCSEEECCSCCBCCSGGG
T ss_pred             CCCEEEecCCCCCCCcch
Confidence            999999999999998753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.5e-23  Score=209.44  Aligned_cols=268  Identities=18%  Similarity=0.229  Sum_probs=219.6

Q ss_pred             CCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCE
Q 003813           11 NLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTT   90 (793)
Q Consensus        11 ~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   90 (793)
                      ..+.+|-++..++.+|..+     .+++++|+|++|+|+.+++.  .+.++++|++|++++|.+..+++..|.++++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-----~~~l~~L~Ls~N~i~~l~~~--~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-----PPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-----CTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             cCCEEEecCCCCCccCCCC-----CCCCCEEECcCCcCCCcChh--HhhccccccccccccccccccchhhhhCCCccCE
Confidence            4678898888888888764     25899999999999988643  4778999999999999999998888999999999


Q ss_pred             EECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCC
Q 003813           91 LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGN  169 (793)
Q Consensus        91 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n  169 (793)
                      |++++|+++. +|..  ....++.|++++|.+....+..+.....++.++...|.... ......+..+++|+.+++++|
T Consensus        84 L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            9999999984 4543  34688999999999988777778888889999988875432 222334888999999999998


Q ss_pred             CCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcC
Q 003813          170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTM  249 (793)
Q Consensus       170 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  249 (793)
                      . +.. ++..+  +++++.|++++|..++..+..+...     +.+++|++++|.+.+..+.++..+++|++|+|++|++
T Consensus       161 ~-l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~-----~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         161 N-ITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGL-----NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             C-CCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTC-----TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             C-ccc-cCccc--CCccCEEECCCCcCCCCChhHhhcc-----ccccccccccccccccccccccccccceeeecccccc
Confidence            7 443 34332  5789999999999988888777766     8899999999999988888999999999999999999


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCccccChhhh------hcCCCCcEEECCCCeee
Q 003813          250 DGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF------VNLTKLVTFRANGNSLI  299 (793)
Q Consensus       250 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~~l~~L~~L~l~~n~l~  299 (793)
                      + .+|.++..+++|++|++++|+++ .++...|      ...++|+.|++++|++.
T Consensus       232 ~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         232 V-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             c-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8 56889999999999999999987 5544333      45778999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-22  Score=200.10  Aligned_cols=200  Identities=18%  Similarity=0.177  Sum_probs=160.3

Q ss_pred             CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813          416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM  495 (793)
Q Consensus       416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  495 (793)
                      ..+.+.+.++++++. +|..+.  +++++|+|++|+|++..+.+|.++++|++|+|++|+|+.+.  .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            455667788888874 565553  46888888888888766677888888888888888887542  3567888888888


Q ss_pred             CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                      ++|+++ .++..+. .+++|++|++++|++.+..+..+..+.++++|++++|.+.+..+..+..++.             
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~-------------  149 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-------------  149 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceecccccccccc-------------
Confidence            888887 4455444 6888999999999888777777888899999999999988555554444443             


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI  655 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  655 (793)
                                                     ++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|
T Consensus       150 -------------------------------l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         150 -------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             -------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             -------------------------------chhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                                           478999999999888888999999999999999999 899999999999


Q ss_pred             CEEECCCCcCCC
Q 003813          656 ESLDFSANQLSG  667 (793)
Q Consensus       656 ~~L~Ls~N~l~~  667 (793)
                      +.|+|++|.+..
T Consensus       198 ~~L~L~~Np~~C  209 (266)
T d1p9ag_         198 PFAFLHGNPWLC  209 (266)
T ss_dssp             SEEECCSCCBCC
T ss_pred             CEEEecCCCCCC
Confidence            999999998863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.1e-22  Score=214.65  Aligned_cols=109  Identities=22%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             ccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCC----CccCCCCCCCCEEECcCccCCCc----cccccc-C
Q 003813           38 LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFP----PLSSANFSSLTTLDLSENEFQGQ----IPSRLG-N  108 (793)
Q Consensus        38 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~-~  108 (793)
                      |++||++++++++. ++...+..++++++|+|++|.++...    ...+..+++|++|||++|.++..    +...+. .
T Consensus         4 l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           4 IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            44444444444442 12222333444455555555443211    11233444555555555544311    111111 1


Q ss_pred             CCCCCEEeCcCCcCccC----CcccccCCCCCCEEEccCCccc
Q 003813          109 LTSLKYLDLSFNQFNSV----VPGWLSKLNDLEFLSLQSNRLQ  147 (793)
Q Consensus       109 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  147 (793)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23455555555555432    2233444555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2.3e-17  Score=172.48  Aligned_cols=112  Identities=24%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD  116 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  116 (793)
                      ++++|+|++++++.+|+.      .++|++|++++|+|+.+|. .   ..+|+.|++++|.++. ++. +  .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~~------~~~L~~L~Ls~N~l~~lp~-~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEE
T ss_pred             CCCEEEeCCCCCCCCCCC------CCCCCEEECCCCCCccccc-c---hhhhhhhhhhhcccch-hhh-h--cccccccc
Confidence            466666666666665542      3566666666666666653 2   2456666666666652 221 1  13466677


Q ss_pred             CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCC
Q 003813          117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN  169 (793)
Q Consensus       117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n  169 (793)
                      +++|.+.. +|. ++.+++|++|++++|.+. ..+.    ....+..+.+..+
T Consensus       105 L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~  150 (353)
T d1jl5a_         105 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNN  150 (353)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSS
T ss_pred             cccccccc-ccc-hhhhccceeecccccccc-cccc----ccccccchhhccc
Confidence            77666665 332 456666777777666655 2222    2344555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.2e-16  Score=166.99  Aligned_cols=94  Identities=26%  Similarity=0.342  Sum_probs=74.8

Q ss_pred             CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813           62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL  141 (793)
Q Consensus        62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  141 (793)
                      .++++|+|+++.++.+|+    ..++|++|++++|+++ .+|+.   ..+|+.|++++|+++.+ +. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence            468899999999998874    2468999999999998 56755   45889999999988763 32 1  246999999


Q ss_pred             cCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813          142 QSNRLQGNISSLGLENLTSIQTLLLSGND  170 (793)
Q Consensus       142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  170 (793)
                      ++|.+. .+|.  ++.+++|++|+++++.
T Consensus       106 ~~n~l~-~lp~--~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         106 SNNQLE-KLPE--LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CSSCCS-SCCC--CTTCTTCCEEECCSSC
T ss_pred             cccccc-cccc--hhhhccceeecccccc
Confidence            999988 6775  6788889999988875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-20  Score=205.30  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=37.8

Q ss_pred             eeEEEcccCccee----eCccccccccCCceeeccCCcccccCCcccc-----CcCCCCEEECCCCcCCCCCcc
Q 003813          607 VRGIDISKNNFSG----EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG-----VMRSIESLDFSANQLSGYIPQ  671 (793)
Q Consensus       607 L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~~p~  671 (793)
                      |++|+|++|+|+.    .+++.+..+++|++|||++|+++......+.     +.+.|+.|++++|.+....+.
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence            3556666666543    2344455667777777777777643332221     234677888888777654443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.1e-18  Score=167.68  Aligned_cols=204  Identities=21%  Similarity=0.348  Sum_probs=142.1

Q ss_pred             EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 003813          420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE  499 (793)
Q Consensus       420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  499 (793)
                      .++++.+++++..  .+..+.+|+.|++.+|+++. + ..+..+++|++|++++|++++..|  +.++++|+.+++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3445555555433  33456677777777777774 3 346777777777777777775433  6777777777777777


Q ss_pred             ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813          500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS  579 (793)
Q Consensus       500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  579 (793)
                      ++ .++. +. .+++|+.+++++|...+..  .+...+.++.+.++++.+....+  +.+                    
T Consensus        97 ~~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~--------------------  149 (227)
T d1h6ua2          97 LK-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG--------------------  149 (227)
T ss_dssp             CS-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------
T ss_pred             cc-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hcc--------------------
Confidence            76 4543 33 5777788888777766432  35566777888887777653221  222                    


Q ss_pred             CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813          580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD  659 (793)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  659 (793)
                                              .+.++.|++++|.+++..  .++++++|++|+|++|++++ +|. ++++++|+.|+
T Consensus       150 ------------------------~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~  201 (227)
T d1h6ua2         150 ------------------------LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVH  201 (227)
T ss_dssp             ------------------------CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             ------------------------ccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEE
Confidence                                    234577888888876433  37889999999999999984 544 88999999999


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          660 FSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      +++|++++. | .++++++|++|++++
T Consensus       202 Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            999999854 4 388999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.3e-18  Score=166.84  Aligned_cols=220  Identities=14%  Similarity=0.070  Sum_probs=125.6

Q ss_pred             cEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccc-cCccccCCCCCCEEeCCC
Q 003813          419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI-IPTSFNNFTILEALDMGE  497 (793)
Q Consensus       419 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~  497 (793)
                      +.++.++..++ .+|+.+.  +++++|++++|+++...+.+|.++++|++|++++|.+.+. .+.+|.+++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34555555555 3443331  3566666666666654444566666666666666665543 234566666666666543


Q ss_pred             -CcccccCchhHHhhcccCcEEEccCccccccCCc-cccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813          498 -NELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI-QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI  575 (793)
Q Consensus       498 -N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  575 (793)
                       |.+. .++...+.++++|+++++++|.+....+. .+..+..+..+..+++.+...-+..+.+++              
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------  152 (242)
T d1xwdc1          88 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  152 (242)
T ss_dssp             CTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             ccccc-ccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc--------------
Confidence             4444 23333333566666666666666532221 223344455555555555433233322221              


Q ss_pred             ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCce-eeccCCcccccCCccccCcCC
Q 003813          576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQS-LNFSYNLFTGRIPDNIGVMRS  654 (793)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~  654 (793)
                                                   ..++.|++++|++++..+..+ ...++++ +++++|+++...+..|.++++
T Consensus       153 -----------------------------~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~  202 (242)
T d1xwdc1         153 -----------------------------FESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASG  202 (242)
T ss_dssp             -----------------------------SSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCC
T ss_pred             -----------------------------ccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCC
Confidence                                         124677888888875444444 3444444 456778888544556888889


Q ss_pred             CCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      |+.|++++|+++...+..|.+++.|+++++.+
T Consensus       203 L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         203 PVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999988866666788888777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.4e-18  Score=168.21  Aligned_cols=221  Identities=13%  Similarity=0.092  Sum_probs=165.4

Q ss_pred             cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc-CCCCCCCCCCccEE
Q 003813          391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS-LPMSIGTLSSLMSL  469 (793)
Q Consensus       391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  469 (793)
                      +.++.++..++ .+|..+      ++++++|++++|+++...+.+|.++++|++|++++|.+... .+.+|.+++.++++
T Consensus        11 ~~i~c~~~~l~-~iP~~l------~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS------CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-CcCCCC------CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            45566665555 344322      36799999999999977777899999999999999998764 45578889999999


Q ss_pred             EccC-CccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCC-CcCEEEcccC
Q 003813          470 NLRN-NRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA-SLQILDVAYN  547 (793)
Q Consensus       470 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N  547 (793)
                      .+.. |.+....+..|.++++|+.+++++|.+....+......+..+..+...++.+....+..+.+++ .++.+++++|
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            8864 6888888899999999999999999987332322233455666667778888866666776664 7899999999


Q ss_pred             ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813          548 NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN  627 (793)
Q Consensus       548 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  627 (793)
                      +++. ++....+...+                                           .+.+++++|+++...+..|.+
T Consensus       164 ~l~~-i~~~~~~~~~l-------------------------------------------~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         164 GIQE-IHNCAFNGTQL-------------------------------------------DELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             CCCE-ECTTTTTTCCE-------------------------------------------EEEECTTCTTCCCCCTTTTTT
T ss_pred             cccc-cccccccchhh-------------------------------------------hccccccccccccccHHHhcC
Confidence            9984 33332222221                                           244567889998655667899


Q ss_pred             ccCCceeeccCCcccccCCccccCcCCCCEEECCC
Q 003813          628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSA  662 (793)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  662 (793)
                      +++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999999999965566788888777776643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.3e-17  Score=160.21  Aligned_cols=186  Identities=22%  Similarity=0.346  Sum_probs=85.1

Q ss_pred             CCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEE
Q 003813           61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS  140 (793)
Q Consensus        61 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  140 (793)
                      +.+|++|++.+|+++.+.  .+.++++|++|++++|.+++..  .+..+++|+++++++|.++..  ..+.++++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccc
Confidence            344555555555554442  2444555555555555544322  144455555555555544432  2244455555555


Q ss_pred             ccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEc
Q 003813          141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDL  220 (793)
Q Consensus       141 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L  220 (793)
                      ++++... .++.  +...+.++.+.++.+. +...  ..+..+                             ++|++|++
T Consensus       114 l~~~~~~-~~~~--~~~~~~~~~l~~~~~~-~~~~--~~~~~~-----------------------------~~L~~L~l  158 (227)
T d1h6ua2         114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQ-ITNI--SPLAGL-----------------------------TNLQYLSI  158 (227)
T ss_dssp             CTTSCCC-CCGG--GTTCTTCCEEECCSSC-CCCC--GGGGGC-----------------------------TTCCEEEC
T ss_pred             ccccccc-ccch--hccccchhhhhchhhh-hchh--hhhccc-----------------------------cccccccc
Confidence            5554443 1111  3344444444444443 1110  111122                             34444444


Q ss_pred             cCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECC
Q 003813          221 GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN  294 (793)
Q Consensus       221 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  294 (793)
                      ++|.+.+..  .++++++|++|++++|++++. + .++++++|++|++++|+++ .++  .+.++++|+.|+++
T Consensus       159 ~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt-~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS-DVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC-BCG--GGTTCTTCCEEEEE
T ss_pred             cccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC-CCc--ccccCCCCCEEEee
Confidence            444443222  245555555555555555532 2 2555566666666666555 232  25555666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=2.1e-18  Score=162.39  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=18.1

Q ss_pred             cccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCC
Q 003813          623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS  666 (793)
Q Consensus       623 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  666 (793)
                      ..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+.
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            33344444444444444444333333444444444444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.8e-17  Score=157.03  Aligned_cols=73  Identities=19%  Similarity=0.342  Sum_probs=49.5

Q ss_pred             eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813          608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN  686 (793)
Q Consensus       608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  686 (793)
                      +.+++++|.+++  +..+..+++|+++++++|++++ +++ ++++++|+.|+|++|+++. +| .++++++|++|+|++
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            444555555442  2245567778888888888874 433 7778888888888888873 44 478888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=5.1e-18  Score=159.77  Aligned_cols=155  Identities=18%  Similarity=0.241  Sum_probs=118.3

Q ss_pred             CcEEEccCccccccCCccccCCCCcCEEEcccCcccccc-CccccccccCccccCCCCCCccccccCCccchhhhhhhhh
Q 003813          515 LIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI-PRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM  593 (793)
Q Consensus       515 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (793)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.+++.                               
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~-------------------------------   55 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPH-------------------------------   55 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTT-------------------------------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCce-------------------------------
Confidence            345666677766 5565543  57778888888876544 334444444                               


Q ss_pred             ccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813          594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSM  673 (793)
Q Consensus       594 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  673 (793)
                                   |+.|+|++|++++..+..+..+++|++|+|++|++++..|+.|.++++|+.|+|++|+|++..|.+|
T Consensus        56 -------------L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          56 -------------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             -------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             -------------EeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence                         3778888888888888899999999999999999998889999999999999999999999999999


Q ss_pred             cCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813          674 SNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP  716 (793)
Q Consensus       674 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  716 (793)
                      ..+++|++++|++|++.|.++..+...++....+.+| .-|+.|
T Consensus       123 ~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            9999999999999999998875543333333333333 334433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.5e-16  Score=150.58  Aligned_cols=148  Identities=26%  Similarity=0.372  Sum_probs=70.8

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      ++++++|+++++.+++++.    ++.+++|++|++++|+++++++  ++++++|++|++++|.+... + .+.++++|+.
T Consensus        39 l~~l~~L~l~~~~i~~l~~----l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSE
T ss_pred             hcCCCEEECCCCCCCCccc----cccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccc
Confidence            4455555555555554422    3344555555555555554442  44555555555555554422 1 2445555555


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT  194 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n  194 (793)
                      |++++|.+...  ..+..+++|+.|++++|++. .++.  +..+++|++|++.+|. +++.  ..++++++|+.|++++|
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~n~-l~~l--~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSSNQ-VTDL--KPLANLTTLERLDISSN  182 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSC-CCCC--GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhc-cccc--cccccccccccccccc-ccCC--ccccCCCCCCEEECCCC
Confidence            55555544432  22444555555555555544 3322  4455555555555554 3321  12445555555555555


Q ss_pred             cccc
Q 003813          195 NLSQ  198 (793)
Q Consensus       195 ~l~~  198 (793)
                      +++.
T Consensus       183 ~i~~  186 (199)
T d2omxa2         183 KVSD  186 (199)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=152.79  Aligned_cols=164  Identities=28%  Similarity=0.408  Sum_probs=86.5

Q ss_pred             CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813           35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY  114 (793)
Q Consensus        35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  114 (793)
                      +.+|++|++++|.+++++.    +..+++|++|++++|+++++++  ++++++|++|++++|++++ ++ .+.++++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCchh----HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccccccc
Confidence            4455555666655555432    3445556666666665555542  4555556666666665553 22 3555556666


Q ss_pred             EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813          115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT  194 (793)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n  194 (793)
                      |++++|.+...  ..+.++++++.+++++|.++ ..+.  +..+++|+++++++|+ +++ ++ .+.++++|+.|++++|
T Consensus       117 L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~-l~~-i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQ-ISD-IV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSC-CCC-CG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc--cccccccccccccccccccc-cccc--cccccccccccccccc-ccc-cc-cccCCCCCCEEECCCC
Confidence            66665555432  23555555666666655554 2221  4455556666666554 332 11 2555556666666666


Q ss_pred             cccccchhHHhhhccccCCCccEEEcc
Q 003813          195 NLSQDISEILGIFSACVANELESLDLG  221 (793)
Q Consensus       195 ~l~~~~~~~~~~~~~~~~~~L~~L~L~  221 (793)
                      .++. ++ .+..+     ++|++|+++
T Consensus       189 ~i~~-l~-~l~~l-----~~L~~L~Ls  208 (210)
T d1h6ta2         189 HISD-LR-ALAGL-----KNLDVLELF  208 (210)
T ss_dssp             CCCB-CG-GGTTC-----TTCSEEEEE
T ss_pred             CCCC-Ch-hhcCC-----CCCCEEEcc
Confidence            5543 22 23333     566666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.3e-16  Score=146.13  Aligned_cols=178  Identities=22%  Similarity=0.317  Sum_probs=99.6

Q ss_pred             EEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcC
Q 003813           40 HLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF  119 (793)
Q Consensus        40 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  119 (793)
                      .+.++.+.+++...    ...++++++|++++|+++.+.  .+..+++|++|++++|++++..  .++++++|++|++++
T Consensus        22 ~~~l~~~~~~~~~~----~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          22 KTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHTTCSSTTSEEC----HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             HHHhCCCCCCCccC----HHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCcc--cccCCcccccccccc
Confidence            33455555554321    123456666666666666553  3556666666666666666432  266666666666666


Q ss_pred             CcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCccccc
Q 003813          120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQD  199 (793)
Q Consensus       120 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  199 (793)
                      |.+... + .++++++|++|++++|... .++.  +.++++|+.|++++|+ +..  .+.+..+++++.|++.+|.+++.
T Consensus        94 n~~~~~-~-~l~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2          94 NQIADI-T-PLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             SCCCCC-G-GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSC-CCC--CGGGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccc-c-ccccccccccccccccccc-cccc--cchhhhhHHhhhhhhh-hcc--cccccccccccccccccccccCC
Confidence            666543 2 3566666666666666655 2222  5566666666666665 322  23456666666666666666542


Q ss_pred             chhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEE
Q 003813          200 ISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFL  242 (793)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  242 (793)
                      .  .++.+     ++|++|++++|++++. + .++.+++|++|
T Consensus       166 ~--~l~~l-----~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 K--PLANL-----TTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             G--GGTTC-----TTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             c--cccCC-----CCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            1  13333     6666666666666442 2 35566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.4e-16  Score=154.43  Aligned_cols=250  Identities=16%  Similarity=0.157  Sum_probs=150.3

Q ss_pred             cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc-CCCCCCCCCCccEE
Q 003813          391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS-LPMSIGTLSSLMSL  469 (793)
Q Consensus       391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  469 (793)
                      +.+|++++.+.+.....+..     .....+.++...+...... .....+|++||+++|.++.. +...+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-----ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            45667666665433332222     2355667776665533333 33456788899988887643 23346678888999


Q ss_pred             EccCCccccccCccccCCCCCCEEeCCCC-cccccCchhHHhhcccCcEEEccCcc-cccc-CCcccc-CCCCcCEEEcc
Q 003813          470 NLRNNRLSGIIPTSFNNFTILEALDMGEN-ELVGNIPTWMGERFSRLIILNLRSNK-FHGD-FPIQLC-RLASLQILDVA  545 (793)
Q Consensus       470 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~-~l~~L~~L~Ls  545 (793)
                      ++++|.+++..+..+..+++|++|++++| .+++.--..+...+++|++|++++|. ++.. ++..+. .+++|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            99888888777777888888999998886 45432222334467888888888863 3321 112222 24678888887


Q ss_pred             cCc--cccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccC-cceeeCc
Q 003813          546 YNN--LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN-NFSGEVP  622 (793)
Q Consensus       546 ~N~--l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~p  622 (793)
                      ++.  ++..   .+                                        ......++.|++||+++| .+++...
T Consensus       157 ~~~~~i~~~---~l----------------------------------------~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         157 GYRKNLQKS---DL----------------------------------------STLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             SCGGGSCHH---HH----------------------------------------HHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             ccccccccc---cc----------------------------------------cccccccccccccccccccCCCchhh
Confidence            642  2210   00                                        011123455677888775 4666666


Q ss_pred             cccccccCCceeeccC-CcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813          623 VEVTNLQGLQSLNFSY-NLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE  692 (793)
Q Consensus       623 ~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  692 (793)
                      ..+.++++|++|++++ +.+++.....++++++|+.|+++++--.+.++.....+++|   .+..++++..
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCC
Confidence            6777778888888887 36766666667777888888887762222222222334443   3455555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.3e-15  Score=149.66  Aligned_cols=218  Identities=17%  Similarity=0.164  Sum_probs=122.4

Q ss_pred             ccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCc-ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEcc
Q 003813           64 LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ  142 (793)
Q Consensus        64 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  142 (793)
                      +..+.++...+..... ......+|++||++++.++.. +...+..+++|++|++++|.+.+..+..++++++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            3445555444333222 223345677777777666533 23345666777777777776665555666667777777777


Q ss_pred             CCc-cccc-cChhhhcCCCCCcEEEcCCCCCCCCC-CcccccC-CCCCcEEEccCC--ccccc-chhHHhhhccccCCCc
Q 003813          143 SNR-LQGN-ISSLGLENLTSIQTLLLSGNDELGGK-IPTSFGR-FCKLKSFSTGFT--NLSQD-ISEILGIFSACVANEL  215 (793)
Q Consensus       143 ~n~-l~~~-i~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~l~~-l~~L~~L~l~~n--~l~~~-~~~~~~~~~~~~~~~L  215 (793)
                      +|. ++.. +... ..++++|++|++++|..++.. +...+.. .+.|+.|+++++  .++.. +......+     ++|
T Consensus       104 ~c~~itd~~l~~l-~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~-----~~L  177 (284)
T d2astb2         104 GCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-----PNL  177 (284)
T ss_dssp             TCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-----TTC
T ss_pred             ccccccccccchh-hHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccc-----ccc
Confidence            653 3311 1111 345677777777776433321 1222222 346666666643  23322 22222333     678


Q ss_pred             cEEEccCc-ccccccccccCCCCCCCEEeCcCC-cCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCc
Q 003813          216 ESLDLGSC-QIFGHMTNQLGRFKGLNFLDLSNT-TMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLV  289 (793)
Q Consensus       216 ~~L~L~~n-~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  289 (793)
                      ++|++++| .+++.....+.++++|++|++++| .+++.....++++++|++|+++++ ++...-......+++|+
T Consensus       178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            88888876 456566666777888888888875 566666666777888888888776 32221121234566554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-15  Score=135.87  Aligned_cols=129  Identities=15%  Similarity=0.129  Sum_probs=85.7

Q ss_pred             cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813           32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS  111 (793)
Q Consensus        32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  111 (793)
                      +.+...+++|+|++|+|+.++..   +..+++|++|++++|.|+.++  .|..+++|++|++++|.++...+..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~---~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCCccCcc---ccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccc
Confidence            45666677777777777776442   345677777777777777664  4667777777777777777544445566777


Q ss_pred             CCEEeCcCCcCccCCc-ccccCCCCCCEEEccCCccccccCh---hhhcCCCCCcEEEc
Q 003813          112 LKYLDLSFNQFNSVVP-GWLSKLNDLEFLSLQSNRLQGNISS---LGLENLTSIQTLLL  166 (793)
Q Consensus       112 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L  166 (793)
                      |++|++++|+++.... ..+..+++|++|++++|.++ ..+.   ..+..+++|++||-
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            7777777777765321 35667777777777777776 4442   23667777777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=131.63  Aligned_cols=128  Identities=21%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             CCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCC
Q 003813            6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANF   85 (793)
Q Consensus         6 l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   85 (793)
                      +.+..++++|||++|.|+.+++.   +..+++|++|++++|.|+.++.    +..+++|++|++++|+++.+++..+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~---~~~l~~L~~L~Ls~N~i~~l~~----~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEECC----CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             ccCcCcCcEEECCCCCCCccCcc---ccccccCCEEECCCCCCCccCC----cccCcchhhhhcccccccCCCccccccc
Confidence            34445555555555555444321   3445555555555555554422    3455555555555555555554444455


Q ss_pred             CCCCEEECcCccCCCccc-ccccCCCCCCEEeCcCCcCccCC---cccccCCCCCCEEE
Q 003813           86 SSLTTLDLSENEFQGQIP-SRLGNLTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFLS  140 (793)
Q Consensus        86 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~  140 (793)
                      ++|++|++++|.++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            555555555555553211 23455555555555555554421   11344455555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.6e-14  Score=122.44  Aligned_cols=102  Identities=26%  Similarity=0.336  Sum_probs=58.0

Q ss_pred             cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813           39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS  118 (793)
Q Consensus        39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  118 (793)
                      |+|+|++|+++.++.    +..+++|++|++++|+++.+++ .++.+++|++|++++|.+++. | .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l~~----l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH----LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCCC----GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCcc----cccCCCCCEEECCCCccCcchh-hhhhhhccccccccccccccc-C-ccccccccCeEECC
Confidence            355556665555432    3455566666666666665543 455566666666666666532 2 35666666666666


Q ss_pred             CCcCccCC-cccccCCCCCCEEEccCCccc
Q 003813          119 FNQFNSVV-PGWLSKLNDLEFLSLQSNRLQ  147 (793)
Q Consensus       119 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  147 (793)
                      +|+++... ...+..+++|++|++++|+++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            66665432 234556666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=9.7e-16  Score=158.94  Aligned_cols=241  Identities=15%  Similarity=0.171  Sum_probs=153.1

Q ss_pred             CCCCCccEEEccCCccccc----CCCCccCCCCCCEEEccCCccccc----------CCCCCCCCCCccEEEccCCcccc
Q 003813          413 NFSKNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGS----------LPMSIGTLSSLMSLNLRNNRLSG  478 (793)
Q Consensus       413 ~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~  478 (793)
                      .....++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            3357777888887776542    233455667788888877654311          11224456778888888887764


Q ss_pred             c----cCccccCCCCCCEEeCCCCcccccCchhH------------HhhcccCcEEEccCcccccc----CCccccCCCC
Q 003813          479 I----IPTSFNNFTILEALDMGENELVGNIPTWM------------GERFSRLIILNLRSNKFHGD----FPIQLCRLAS  538 (793)
Q Consensus       479 ~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~------------~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~  538 (793)
                      .    +...+..+++|+.|++++|.+...-...+            ....+.|+.+++++|++...    +...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            3    22344567788888888887642111111            12356788888888877532    2334556778


Q ss_pred             cCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcce
Q 003813          539 LQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFS  618 (793)
Q Consensus       539 L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  618 (793)
                      |+.|++++|.+...-...                                       .........+.|+.|+|++|.++
T Consensus       188 L~~L~L~~n~i~~~g~~~---------------------------------------~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEH---------------------------------------LLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CCEEECCSSCCCHHHHHH---------------------------------------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hccccccccccccccccc---------------------------------------chhhhhcchhhhccccccccccc
Confidence            888888888875210000                                       00111233456788999999886


Q ss_pred             ee----CccccccccCCceeeccCCcccccCCccc----cC--cCCCCEEECCCCcCCCC----Cccccc-CCCCCCeEE
Q 003813          619 GE----VPVEVTNLQGLQSLNFSYNLFTGRIPDNI----GV--MRSIESLDFSANQLSGY----IPQSMS-NLSFLNYLN  683 (793)
Q Consensus       619 ~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~--l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~  683 (793)
                      ..    +...+..+++|++|+|++|.+++.-...+    ..  .+.|+.||+++|+++..    +...+. +++.|++|+
T Consensus       229 ~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            43    44566788999999999999885533333    22  36799999999998743    233343 578899999


Q ss_pred             cccCccccc
Q 003813          684 LSNNNLNGE  692 (793)
Q Consensus       684 ls~N~l~g~  692 (793)
                      +++|++...
T Consensus       309 l~~N~~~~~  317 (344)
T d2ca6a1         309 LNGNRFSEE  317 (344)
T ss_dssp             CTTSBSCTT
T ss_pred             CCCCcCCCc
Confidence            999998643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=4.5e-15  Score=153.80  Aligned_cols=112  Identities=17%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             CCCCCEEEccCCccccc-----CCCCCCCCCCccEEEccCCccccc----cCccccCCCCCCEEeCCCCcccccCchhHH
Q 003813          439 WPRLRMLNLRNNNFTGS-----LPMSIGTLSSLMSLNLRNNRLSGI----IPTSFNNFTILEALDMGENELVGNIPTWMG  509 (793)
Q Consensus       439 l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  509 (793)
                      ++.|++|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+.+.-...+.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            34455555555544321     222344455555555555555422    223345556666666666665533222222


Q ss_pred             h-----hcccCcEEEccCcccccc----CCcccc-CCCCcCEEEcccCccc
Q 003813          510 E-----RFSRLIILNLRSNKFHGD----FPIQLC-RLASLQILDVAYNNLS  550 (793)
Q Consensus       510 ~-----~l~~L~~L~L~~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~  550 (793)
                      .     ..+.|++|++++|++...    +...+. ++++|+.|++++|++.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            1     123566667766666532    122232 4567788888888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=6.1e-14  Score=120.08  Aligned_cols=118  Identities=23%  Similarity=0.226  Sum_probs=97.9

Q ss_pred             cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813           13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD   92 (793)
Q Consensus        13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   92 (793)
                      |+|||++|+++.++.    +.++++|++|++++|.++++++   .++.+++|++|++++|.++.++  .++++++|++|+
T Consensus         1 R~L~Ls~n~l~~l~~----l~~l~~L~~L~ls~N~l~~lp~---~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH----LEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNALENVD--GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSCCC----GGGGTTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCCCcc----cccCCCCCEEECCCCccCcchh---hhhhhhcccccccccccccccC--ccccccccCeEE
Confidence            689999999986653    7889999999999999998864   4678999999999999999986  589999999999


Q ss_pred             CcCccCCCcc-cccccCCCCCCEEeCcCCcCccCC---cccccCCCCCCEE
Q 003813           93 LSENEFQGQI-PSRLGNLTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFL  139 (793)
Q Consensus        93 Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L  139 (793)
                      +++|+++... ...+..+++|++|++++|.+....   ...+..+++|+.|
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999998543 357899999999999999987632   2223446666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.9e-12  Score=114.56  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             eeEEEcccC-cceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813          607 VRGIDISKN-NFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS  685 (793)
Q Consensus       607 L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  685 (793)
                      +++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+|++|+++...+..|..+ .|++|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC
Confidence            467788665 4776667789999999999999999998888999999999999999999996555556554 79999999


Q ss_pred             cCcccccCCC
Q 003813          686 NNNLNGEIPS  695 (793)
Q Consensus       686 ~N~l~g~ip~  695 (793)
                      +|++.|.|-.
T Consensus       112 ~Np~~C~C~~  121 (156)
T d2ifga3         112 GNPLHCSCAL  121 (156)
T ss_dssp             SSCCCCCGGG
T ss_pred             CCcccCCchH
Confidence            9999887743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=5.6e-15  Score=138.54  Aligned_cols=146  Identities=25%  Similarity=0.269  Sum_probs=111.5

Q ss_pred             CCCcEEeCCCCC--CCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCC
Q 003813           10 SNLQYLDLSGYN--FKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSS   87 (793)
Q Consensus        10 ~~L~~L~Ls~~~--~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   87 (793)
                      ...+.+++++..  ++.++   ..+..+++|++|+|++|+|+.++.    +..+++|++|++++|.++.++. .+..+++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~---~sl~~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~   94 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMD---ATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNLIKKIEN-LDAVADT   94 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCH---HHHHHTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEEEECSCSS-HHHHHHH
T ss_pred             cccceeeeecccCchhhhh---hHHhcccccceeECcccCCCCccc----ccCCccccChhhcccccccccc-ccccccc
Confidence            445667776542  22222   237789999999999999998753    5678999999999999988864 4445678


Q ss_pred             CCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCc-ccccCCCCCCEEEccCCccccccCh---------hhhcC
Q 003813           88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP-GWLSKLNDLEFLSLQSNRLQGNISS---------LGLEN  157 (793)
Q Consensus        88 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~---------~~~~~  157 (793)
                      |++|++++|.++..  ..+..+++|++|++++|+++.... ..+..+++|++|++++|++....+.         ..+..
T Consensus        95 L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_          95 LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            99999999999853  458889999999999999987432 4688999999999999988643222         12567


Q ss_pred             CCCCcEEE
Q 003813          158 LTSIQTLL  165 (793)
Q Consensus       158 l~~L~~L~  165 (793)
                      +++|+.||
T Consensus       173 lp~L~~LD  180 (198)
T d1m9la_         173 LPNLKKLD  180 (198)
T ss_dssp             CSSCCEES
T ss_pred             CCCcCEeC
Confidence            89999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=8.6e-14  Score=130.32  Aligned_cols=130  Identities=20%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             cCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCc
Q 003813          503 NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGD  582 (793)
Q Consensus       503 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  582 (793)
                      .+|..+. .+++|++|+|++|+++ .++ .+..+++|+.|++++|+++ .+|.....                       
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-----------------------   91 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV-----------------------   91 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-----------------------
T ss_pred             hhhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc-----------------------
Confidence            3444444 4666666666666666 333 3556666666666666664 22321111                       


Q ss_pred             cchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCC--ccccCcCCCCEEEC
Q 003813          583 EKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP--DNIGVMRSIESLDF  660 (793)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L  660 (793)
                                           .+.|+.|++++|+++. + +.+.++++|+.|++++|+++. ++  ..++.+++|+.|++
T Consensus        92 ---------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L  147 (198)
T d1m9la_          92 ---------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             ---------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEE
T ss_pred             ---------------------cccccccccccccccc-c-ccccccccccccccccchhcc-ccccccccCCCccceeec
Confidence                                 1234566666666663 2 235666777777777777763 33  35666777777777


Q ss_pred             CCCcCCCCCccc----------ccCCCCCCeEE
Q 003813          661 SANQLSGYIPQS----------MSNLSFLNYLN  683 (793)
Q Consensus       661 s~N~l~~~~p~~----------l~~l~~L~~L~  683 (793)
                      ++|.+....+..          +..+++|++||
T Consensus       148 ~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777665433321          45566777666

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-11  Score=110.85  Aligned_cols=107  Identities=21%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC-CCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEE
Q 003813           37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC-KLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL  115 (793)
Q Consensus        37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  115 (793)
                      ....++.+++.+.+.+.   .+..+++|++|++++| .++.+++.+|.++++|++|+|++|+++.+.+.+|..+++|++|
T Consensus         9 ~~~~l~c~~~~~~~~p~---~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLH---HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSCEECCSSCCCTTTT---TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCeEEecCCCCccCcc---cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34456666666665433   3556777888888655 4788877778888888888888888887767778888888888


Q ss_pred             eCcCCcCccCCcccccCCCCCCEEEccCCccc
Q 003813          116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ  147 (793)
Q Consensus       116 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  147 (793)
                      +|++|+++.+.+..|..+ +|++|++++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eccCCCCcccChhhhccc-cccccccCCCccc
Confidence            888888887655555544 6888888888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-08  Score=89.36  Aligned_cols=80  Identities=19%  Similarity=0.119  Sum_probs=48.1

Q ss_pred             ccceeEEEcccCcceee--CccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcc-------ccc
Q 003813          604 LNLVRGIDISKNNFSGE--VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQ-------SMS  674 (793)
Q Consensus       604 ~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~  674 (793)
                      ++.|++|||++|+|+..  ++..+..+++|+.|||++|.++...+-.+.....|+.|++++|.++.....       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45566677777777643  234456677777777777777733332333445677777777777654432       245


Q ss_pred             CCCCCCeEE
Q 003813          675 NLSFLNYLN  683 (793)
Q Consensus       675 ~l~~L~~L~  683 (793)
                      .+|+|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.1e-07  Score=84.66  Aligned_cols=121  Identities=22%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             CCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCC--ccCCCCCCC
Q 003813           11 NLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPP--LSSANFSSL   88 (793)
Q Consensus        11 ~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L   88 (793)
                      ..+.||+++...  .++    +..+..+..++..++....+   ......+++|++|+|++|+|+.+.+  ..+..+++|
T Consensus        23 ~~~~Ldls~l~~--~~~----l~~~~~~~~l~~~~~~~~~l---~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L   93 (162)
T d1koha1          23 SQQALDLKGLRS--DPD----LVAQNIDVVLNRRSSMAATL---RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL   93 (162)
T ss_dssp             SSCCBCCCCCSS--CTT----TTTTTCCCCTTSHHHHHHHH---HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTC
T ss_pred             hhCeeecccCCC--Cch----hhhccchhhcchhhhHhhhh---HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcc
Confidence            456677775432  121    33344444444444333222   2223568999999999999998764  345678999


Q ss_pred             CEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcc-------cccCCCCCCEEE
Q 003813           89 TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG-------WLSKLNDLEFLS  140 (793)
Q Consensus        89 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~  140 (793)
                      +.|+|++|.|+...+-.+....+|+.|++++|.+......       .+..+|+|+.||
T Consensus        94 ~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          94 KILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999999999965443455566899999999998775442       256789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.67  E-value=9.6e-06  Score=72.14  Aligned_cols=18  Identities=6%  Similarity=0.121  Sum_probs=8.6

Q ss_pred             hCCCCCccEEEccCCCCC
Q 003813           58 INSLPSLKELKLSFCKLH   75 (793)
Q Consensus        58 ~~~l~~L~~L~Ls~n~l~   75 (793)
                      +...++|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCccceeeccccccc
Confidence            344444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.48  E-value=1.3e-05  Score=71.29  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             ccCCCCCCEEEccCCcccccCC----CCCCCCCCccEEEccCCcccccc----CccccCCCCCCEEeCCCCcccc-----
Q 003813          436 WMNWPRLRMLNLRNNNFTGSLP----MSIGTLSSLMSLNLRNNRLSGII----PTSFNNFTILEALDMGENELVG-----  502 (793)
Q Consensus       436 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~-----  502 (793)
                      +...+.|++|+|++|.+.....    ..+...+.|++|++++|.++...    ..++...++|++|++++|.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3444555555555555542111    12233455666666666655321    1234455666666666664431     


Q ss_pred             --cCchhHHhhcccCcEEEccCcc
Q 003813          503 --NIPTWMGERFSRLIILNLRSNK  524 (793)
Q Consensus       503 --~~p~~~~~~l~~L~~L~L~~n~  524 (793)
                        .+...+. ..++|+.|+++.+.
T Consensus       120 ~~~l~~~L~-~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIE-ENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHH-HCSSCCEEECCCCC
T ss_pred             HHHHHHHHH-hCCCccEeeCcCCC
Confidence              0122222 34566777665553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=5.8e-05  Score=66.91  Aligned_cols=15  Identities=20%  Similarity=0.078  Sum_probs=7.8

Q ss_pred             hcCCCCCcEEEcCCC
Q 003813          155 LENLTSIQTLLLSGN  169 (793)
Q Consensus       155 ~~~l~~L~~L~L~~n  169 (793)
                      +...++|++|+++.+
T Consensus       128 L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         128 LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHCSSCCEEECCCS
T ss_pred             HHhCCCcCEEeCcCC
Confidence            344555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00014  Score=64.42  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             ccCCCCCCEEEccCCcccccC----CCCCCCCCCccEEEccCCccccc----cCccccCCCCCCEEeC--CCCccccc--
Q 003813          436 WMNWPRLRMLNLRNNNFTGSL----PMSIGTLSSLMSLNLRNNRLSGI----IPTSFNNFTILEALDM--GENELVGN--  503 (793)
Q Consensus       436 ~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~--  503 (793)
                      +...+.|++|++++|.++...    -..+...++++.+++++|.+...    +...+...++|+.++|  ++|.+...  
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            334555555555555554211    11233345566666666655422    1234455566665444  34444321  


Q ss_pred             --CchhHHhhcccCcEEEccCcc
Q 003813          504 --IPTWMGERFSRLIILNLRSNK  524 (793)
Q Consensus       504 --~p~~~~~~l~~L~~L~L~~n~  524 (793)
                        +...+. ..++|+.|+++.+.
T Consensus       122 ~~La~~L~-~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLE-KNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHH-HCSSCCEEECCCSS
T ss_pred             HHHHHHHH-hCCCcCEEeCcCCC
Confidence              222222 45666666666554