Citrus Sinensis ID: 003872
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZE4 | 805 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.954 | 0.648 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.870 | 0.789 | 0.237 | 4e-52 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.865 | 0.615 | 0.254 | 6e-49 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.624 | 0.881 | 0.256 | 2e-46 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.808 | 0.780 | 0.250 | 6e-46 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.626 | 0.780 | 0.257 | 7e-45 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.622 | 0.782 | 0.264 | 5e-44 | |
| Q9SUD8 | 704 | Pentatricopeptide repeat- | no | no | 0.759 | 0.852 | 0.272 | 3e-43 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.693 | 0.598 | 0.242 | 9e-43 | |
| Q9SS81 | 687 | Pentatricopeptide repeat- | no | no | 0.672 | 0.772 | 0.261 | 2e-42 |
| >sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/803 (64%), Positives = 634/803 (78%), Gaps = 35/803 (4%)
Query: 1 MRHGRKT--------LSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLV 52
MRHGR + LSP NS QL ++LL+A ++KTL +SGTR+LD SIPISEP+V
Sbjct: 1 MRHGRGSAVSAAISGLSPAKNSPFPQLCNVLLVASLSKTLSQSGTRSLDANSIPISEPVV 60
Query: 53 LQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQE 112
LQ+L +NS+D SKKLDFFRWC SLRP YKH+A YS IFRTVCR G L EVP LL SM+E
Sbjct: 61 LQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKE 120
Query: 113 DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172
D V +D K+LL+ I+SGK + A+ +LDYMEELG L+P+VYDSVL++LV+K +L L
Sbjct: 121 DGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRL 180
Query: 173 AMSILFKLLEACNDNTADNS----VVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228
A+SILFKLLEA ++++ D++ +V LPG VA NELLV LR++D RSEFK+VFE+LK
Sbjct: 181 ALSILFKLLEASDNHSDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKG 240
Query: 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV------PDLHTYNSLIQVLC 282
K F+FD + YNICIH FGCWGDL +L LFKEMKE+ V PD+ TYNSLI VLC
Sbjct: 241 MKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLC 300
Query: 283 VVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV 342
+ GK KDALIVW+ELK SGHEP+ T+RI+IQGCCKSYRMDDAM+I+ EMQYNG +PDT+
Sbjct: 301 LFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTI 360
Query: 343 VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL 402
VYN LL+G K+RKV EACQLFEKMVQ+GVR SCWT+NILIDGLFRNGRAEA +TLFCDL
Sbjct: 361 VYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDL 420
Query: 403 KKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462
KKKG+FVD ITFSIV LQLCREG++E A++LVEEME RGF VDLVTISSLLIGFHK GRW
Sbjct: 421 KKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRW 480
Query: 463 DFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGST 522
D+ E+LMKHIR+GNLV +VL+W A VEA++K +SK KDYTPMFP KG +IMS++GS
Sbjct: 481 DWKEKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYTPMFPSKGSFLDIMSMVGSE 540
Query: 523 NLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQ 582
+ +G + +E S + + D WSSSPYMD+LA Q LF LARG RV+
Sbjct: 541 D----------DGASAEEVSPMED-DPWSSSPYMDQLAHQRN---QPKPLFGLARGQRVE 586
Query: 583 GKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV-NYTYNSMMSSFVKKGY 641
K +FD+DM+NTFLSI+L+KG L+LACKLFEIF MGV + +YTYNSMMSSFVKKGY
Sbjct: 587 AKP-DSFDVDMMNTFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGY 645
Query: 642 FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN 701
F A GVL++M E FC DIATYNV+IQGLGKMGRADLAS +LD+L KQ GGYLD+VMYN
Sbjct: 646 FQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLTKQ-GGYLDIVMYN 704
Query: 702 TLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761
TLIN LGKA R DEA LF+ M+++GINPDVV++NT+IEVN KAG+LKEA+ +LK MLD+
Sbjct: 705 TLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDA 764
Query: 762 GCTPNHVTDTTLDFLGREIDRLK 784
GC PNHVTDT LD+LG+E+++ +
Sbjct: 765 GCLPNHVTDTILDYLGKEMEKAR 787
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 170/716 (23%), Positives = 326/716 (45%), Gaps = 28/716 (3%)
Query: 62 DSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET 121
D ++ +++FRW R H +Y+ + + R + + +L M T
Sbjct: 77 DVNRAIEYFRWYER-RTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNT 135
Query: 122 FKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLL 181
++ C+K+ K+ +++ M + + + Y +++ + + +++ ++
Sbjct: 136 CIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQ 195
Query: 182 EACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241
E + P L+ K R + + +K + DI YN+
Sbjct: 196 ELGYE-----------PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSS-SLDADIVLYNV 243
Query: 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG 301
CI +FG G + + + F E++ GL PD TY S+I VLC ++ +A+ ++E L+ +
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR 303
Query: 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361
P + + +I G + + D+A + + G IP + YN +L + K KV EA
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEAL 363
Query: 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQL 421
++FE+M +D + T+NILID L R G+ + A+ L ++K G F + T +I+V +L
Sbjct: 364 KVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Query: 422 CREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDV 481
C+ +++EA + EEM+ + D +T SL+ G K GR D ++ + + D + +
Sbjct: 423 CKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNS 482
Query: 482 LKWKADVEATMKS--RKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKD 539
+ + + ++ ++ K Y M + S + L+ N D +GE +
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMI--NQNCSPDLQLL---NTYMDCMFKAGEPEKGR 537
Query: 540 EGSQLTNSDEW--SSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTF 597
+ + + + Y + +K+ +++ + L ++ QG D N
Sbjct: 538 AMFEEIKARRFVPDARSYSILIHGLIKAG-FANETYELFYSMKEQG---CVLDTRAYNIV 593
Query: 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC 657
+ F GK+N A +L E G P TY S++ K ++A+ + E K
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 658 PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN 717
++ Y+ +I G GK+GR D A IL++LM Q G ++ +N+L++ L KA +EA
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELM-QKGLTPNLYTWNSLLDALVKAEEINEAL 712
Query: 718 MLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
+ F+ M+ P+ VT+ LI K + +A F + M G P+ ++ TT+
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 193/759 (25%), Positives = 338/759 (44%), Gaps = 75/759 (9%)
Query: 61 LDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSE 120
LDS K+ W + + T++ + +C+AG E L+ M++ ++ +
Sbjct: 344 LDSVKQF----WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLH 399
Query: 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKL 180
T+ L+ ++ ++D A+E+ ME LG + P Y + +V + + G ++S L
Sbjct: 400 TYNTLICGLLRVHRLDDALELFGNMESLG--VKPTAY-TYIVFIDYYGKSGDSVSALETF 456
Query: 181 LEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240
+ A P VACN L +L K+ R E KQ+F LK+ D YN
Sbjct: 457 EKMKTKGIA--------PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP-DSVTYN 507
Query: 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS 300
+ + + G++ +++L EM E G PD+ NSLI L +V +A ++ +K
Sbjct: 508 MMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 567
Query: 301 GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEA 360
+P T+ ++ G K+ ++ +A+++F M G P+T+ +N+L + + K+ +V A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 361 CQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQ 420
++ KM+ G +T+N +I GL +NG+ + A F +KK + D +T ++
Sbjct: 628 LKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPG 686
Query: 421 LCREGQIEEALRLV-------EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKH-- 471
+ + IE+A +++ + F DL I S+L F+ERL+ +
Sbjct: 687 VVKASLIEDAYKIITNFLYNCADQPANLFWEDL--IGSILAEAGIDNAVSFSERLVANGI 744
Query: 472 IRDGNLVL-DVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANL 530
RDG+ +L ++++ +R K +T + L LIG LE D
Sbjct: 745 CRDGDSILVPIIRYSCKHNNVSGARTLFEK-FTKDLGVQPKLPTYNLLIGGL-LEADM-- 800
Query: 531 GSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFD 590
A+D Q+ ++ + L D +LF L + + T
Sbjct: 801 ---IEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTIT 857
Query: 591 IDMVNTFLSIFLAKGKLNLACKLF-EIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649
++V +S + G ++ A L+ ++ +D P TY ++ K G +A +
Sbjct: 858 HNIV---ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 914
Query: 650 NEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG------------------ 691
M + C + A YN++I G GK G AD A + +++K+G
Sbjct: 915 EGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMV 974
Query: 692 ----------------GGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-GINPDVVT 734
G DVV YN +IN LGK+ R +EA +LF +M+TS GI PD+ T
Sbjct: 975 GRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYT 1034
Query: 735 FNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
+N+LI G AG ++EA + +G PN T L
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 246/542 (45%), Gaps = 49/542 (9%)
Query: 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295
I+ +N + A + L ++M+ G+ +L+TYN LI C ++ AL +
Sbjct: 10 IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69
Query: 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355
++ G+EP+ T ++ G C R+ DA+ + +M G PDT+ + +L++G+F
Sbjct: 70 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129
Query: 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFS 415
K EA L ++MVQ G + + T+ ++++GL + G + A+ L ++ D + F+
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
Query: 416 IVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475
++ LC+ +++AL L +EME +G ++VT SSL+ YGRW +L+ + +
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 249
Query: 476 NLVLDVLKWKADVEATMKSRK----SKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLG 531
+ +++ + A ++A +K K K D D+ SLI G
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN----------G 299
Query: 532 SGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDI 591
D D+ Q+ V DC D+
Sbjct: 300 FCMHDRLDKAKQM--------------FEFMVSKDCFP--------------------DL 325
Query: 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNE 651
D NT + F ++ +LF + G+ TY +++ G + A V +
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 385
Query: 652 MGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711
M P DI TY++++ GL G+ + A + D M++ LD+ +Y T+I + KAG
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-YMQKSEIKLDIYIYTTMIEGMCKAG 444
Query: 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDT 771
+ D+ LF + G+ P+VVT+NT+I L+EA+ LK M + G P+ T
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYN 504
Query: 772 TL 773
TL
Sbjct: 505 TL 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 173/690 (25%), Positives = 298/690 (43%), Gaps = 51/690 (7%)
Query: 120 ETFKLLLEPCIKSGKIDFAI-EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILF 178
+ + L+EP SG++D + E+ + ++ S S + + L L K+ LA+
Sbjct: 101 QVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELL-AFLKGLGFHKKFDLALRAFD 159
Query: 179 KLLEACN-DNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY 237
++ + + DNSVV + + L K R S +F L+E F D+Y
Sbjct: 160 WFMKQKDYQSMLDNSVVAII---------ISMLGKEGRVSSAANMFNGLQEDG-FSLDVY 209
Query: 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALI-VWEE 296
Y I AF G ++ +FK+M+E G P L TYN ++ V +G + + + E+
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269
Query: 297 LKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK 356
+K G P+ +T+ +I C + +A ++F EM+ G D V YN+LL+ KS +
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSI 416
EA ++ +MV +G S T+N LI R+G + A L + +KG D T++
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGN 476
++ R G++E A+ + EEM G ++ T ++ + + G++ ++ I
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 477 LVLDVLKWKA----------DVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLET 526
L D++ W D E + ++ KR + P L S GS
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 527 -------DANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLF--SLAR 577
DA + + L W S + LA+ C ++L SL
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV--LAEMEDGRCKPNELTYCSLLH 567
Query: 578 GLRVQGKGMGTFDIDMVNTFLSIFLAKG----KLNLAC----------KLFEIFTDMGVH 623
GK +G + + + L L C + F + G
Sbjct: 568 AY-ANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626
Query: 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTI 683
P T NSM+S + ++ +A GVL+ M E+ +ATYN ++ + + I
Sbjct: 627 PDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686
Query: 684 LDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNG 743
L +++ +G D++ YNT+I + R +A+ +F +MR SGI PDV+T+NT I
Sbjct: 687 LREILAKGIK-PDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYA 745
Query: 744 KAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
+EA ++ M+ GC PN T ++
Sbjct: 746 ADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 139/540 (25%), Positives = 243/540 (45%), Gaps = 45/540 (8%)
Query: 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295
I +N + A + L ++M+ +V L+TYN LI C ++ AL +
Sbjct: 85 IVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLG 144
Query: 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355
++ G+EP+ T ++ G C R+ DA+ + +M G PDT+ + +L++G+F
Sbjct: 145 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 204
Query: 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFS 415
K EA L ++MVQ G + + T+ ++++GL + G + A L ++ D + F+
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 416 IVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475
++ LC+ +++AL L +EME +G ++VT SSL+ YGRW +L+ + +
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 324
Query: 476 NLVLDVLKWKADVEATMKSRK--SKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533
+ +++ + A ++A +K K K Y M D +I + N G
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID-PDIFTYNSLVN-------GFC 376
Query: 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593
D D+ Q+ V DC D+
Sbjct: 377 MHDRLDKAKQM--------------FEFMVSKDCFP--------------------DVVT 402
Query: 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653
NT + F ++ +LF + G+ TY +++ G + A V +M
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF 713
P DI TY++++ GL G+ + A + D M++ LD+ +Y T+I + KAG+
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-YMQKSEIKLDIYIYTTMIEGMCKAGKV 521
Query: 714 DEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
D+ LF + G+ P+VVT+NT+I L+EA+ LK M + G PN T TL
Sbjct: 522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 242/540 (44%), Gaps = 48/540 (8%)
Query: 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295
I +N + A + L ++M+ G+ DL+TY+ I C ++ AL V
Sbjct: 83 IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLA 142
Query: 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355
++ G+EP+ T ++ G C S R+ DA+ + +M G PDT + +L++G+F
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202
Query: 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFS 415
K EA L ++MVQ G + T+ +++GL + G + A L ++ + + F+
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262
Query: 416 IVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475
++ LC+ +E A+ L EME +G ++VT +SL+ YGRW RL+ ++ +
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322
Query: 476 NLVLDVLKWKADVEATMKSRK--SKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533
+ +V+ + A ++A K K K + M D I + NL + G
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTI-----TYNLLIN---GFC 374
Query: 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593
+ DE Q+ V DC +I
Sbjct: 375 MHNRLDEAKQM--------------FKFMVSKDCLP--------------------NIQT 400
Query: 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653
NT ++ F ++ +LF + G+ TY +++ F + G + A V +M
Sbjct: 401 YNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV 460
Query: 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF 713
PTDI TY++++ GL G+ D A I K +++ L++ +YNT+I + KAG+
Sbjct: 461 SNRVPTDIMTYSILLHGLCSYGKLDTALVIF-KYLQKSEMELNIFIYNTMIEGMCKAGKV 519
Query: 714 DEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
EA LF + I PDVVT+NT+I L+EA + M + G PN T TL
Sbjct: 520 GEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTL 576
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 181/664 (27%), Positives = 309/664 (46%), Gaps = 64/664 (9%)
Query: 119 SETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSIL 177
SET L C S ++ A+ + + G+SL+ ++++ LVR + LA S
Sbjct: 37 SETETKLRSLCEDSNPQLKNAVSVFQQAVDSGSSLAF-AGNNLMAKLVRSRNHELAFSFY 95
Query: 178 FKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY 237
K+LE +T N V SL G + C V +RK+ F L ++ F F++Y
Sbjct: 96 RKMLET---DTFINFV--SLSGLLEC---YVQMRKTG----FAFGVLALMLKRGFAFNVY 143
Query: 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297
+NI + + ++ L +EM+ L+PD+ +YN++I+ C +++ AL + E+
Sbjct: 144 NHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEM 203
Query: 298 KGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV 357
KGSG + T I+I CK+ +MD+AM EM++ GL D VVY SL+ G ++
Sbjct: 204 KGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGEL 263
Query: 358 MEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417
LF+++++ G T+N LI G + G+ + A +F + ++G + T++ +
Sbjct: 264 DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGL 323
Query: 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477
+ LC G+ +EAL+L+ M + + VT + ++ K +DG L
Sbjct: 324 IDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIII---------------NKLCKDG-L 367
Query: 478 VLDVLKWKADVEATMKSRKSKRKDYT-----PMFPYKGDLSEIMSLIGSTNLETDANLGS 532
V D + ++ MK R+++ + T KGDL E L+
Sbjct: 368 VADAV----EIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM---------- 413
Query: 533 GEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDID 592
KD S T+ D S + + L C ++L + + +G D
Sbjct: 414 ----LKD--SSYTDPDVISYNALIHGL-------CKENRLHQALDIYDLLVEKLGAGDRV 460
Query: 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEM 652
N L+ L G +N A +L++ +D + + TY +M+ F K G N A G+L +M
Sbjct: 461 TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKM 520
Query: 653 GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR 712
+ YN ++ L K G D A + ++ M++ + DVV +N +I+ KAG
Sbjct: 521 RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGD 579
Query: 713 FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN-HVTDT 771
A L M +G++PD+ T++ LI K G L EA F M+DSG P+ H+ D+
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639
Query: 772 TLDF 775
L +
Sbjct: 640 VLKY 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 151/622 (24%), Positives = 281/622 (45%), Gaps = 74/622 (11%)
Query: 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRR 216
Y S+L L+ +G+ I ++++C D+ D V L C ++ D R
Sbjct: 126 YASLLTLLINNGYVGVVFKIRLLMIKSC-DSVGDALYVLDL-----CRKM-----NKDER 174
Query: 217 SEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276
E K ++ I YN +++ +G + +++ EM E + P+++TYN
Sbjct: 175 FELK-----------YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNK 223
Query: 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG 336
++ C +G V++A ++ +G +P+ FT+ +I G C+ +D A K+F+EM G
Sbjct: 224 MVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKG 283
Query: 337 LIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAY 396
+ V Y L++G+ +R++ EA LF KM D + T+ +LI L + R A
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL 343
Query: 397 TLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456
L ++++ G + T+++++ LC + + E+A L+ +M +G + +++T ++L+ G+
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIM 516
K G + +++ + L + + ++ KS K + L +++
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 517 SLIGSTNLETDANLGSGEGDAKDEGSQLTN-----SDEWSSSPYMDKLADQVKSDCHSSQ 571
+ N D SG D+ L N D+W+ ++S
Sbjct: 464 TY----NSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT----------------YTSM 503
Query: 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNS 631
+ SL + RV+ AC LF+ GV+P Y +
Sbjct: 504 IDSLCKSKRVEE--------------------------ACDLFDSLEQKGVNPNVVMYTA 537
Query: 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691
++ + K G ++A +L +M K C + T+N +I GL G+ A T+L++ M +
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKI 596
Query: 692 GGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEA 751
G V LI+ L K G FD A F+QM +SG PD T+ T I+ + GRL +A
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656
Query: 752 HYFLKMMLDSGCTPNHVTDTTL 773
+ M ++G +P+ T ++L
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSL 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 261/567 (46%), Gaps = 36/567 (6%)
Query: 222 VFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281
VF+R++E E I YN ++AF LF + G+ P+L TYN LI++
Sbjct: 100 VFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMS 159
Query: 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDT 341
C + + A + + G +P+ F++ +I K+ ++DDA+++F EM G+ PD
Sbjct: 160 CKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDV 219
Query: 342 VVYNSLLNGMFKSRKVMEACQLFEKMVQD-GVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400
YN L++G K + A +L++++++D V + THNI+I GL + GR + ++
Sbjct: 220 TCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWE 279
Query: 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYG 460
+K+ + D T+S ++ LC G +++A + E++ R +D+VT +++L GF + G
Sbjct: 280 RMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCG 339
Query: 461 R-------WDFTERLMKHIRDGNLV-LDVL------KWKADVEATMKSRKSKRKDYTPMF 506
+ W R+M+H N+V ++L K D EATM R K Y
Sbjct: 340 KIKESLELW----RIMEHKNSVNIVSYNILIKGLLENGKID-EATMIWRLMPAKGYAADK 394
Query: 507 PYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSD 566
G + + G N LG + + + G L D ++ + +D L
Sbjct: 395 TTYGIFIHGLCVNGYVN----KALGVMQ-EVESSGGHL---DVYAYASIIDCL------- 439
Query: 567 CHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN 626
C +L + ++ K + + N + + +L A G P
Sbjct: 440 CKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTV 499
Query: 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDK 686
+YN ++ K G F +A + EM E D+ TY++++ GL + + DLA + +
Sbjct: 500 VSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQ 559
Query: 687 LMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAG 746
+ Q G DV+M+N LI+ L G+ D+A + M ++VT+NTL+E K G
Sbjct: 560 FL-QSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVG 618
Query: 747 RLKEAHYFLKMMLDSGCTPNHVTDTTL 773
A M G P+ ++ T+
Sbjct: 619 DSNRATVIWGYMYKMGLQPDIISYNTI 645
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | ||||||
| 225425456 | 792 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.972 | 0.701 | 0.0 | |
| 255548135 | 898 | pentatricopeptide repeat-containing prot | 0.954 | 0.839 | 0.699 | 0.0 | |
| 42566234 | 805 | pentatricopeptide repeat-containing prot | 0.972 | 0.954 | 0.648 | 0.0 | |
| 449445529 | 803 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.965 | 0.650 | 0.0 | |
| 297814175 | 802 | pentatricopeptide repeat-containing prot | 0.972 | 0.957 | 0.644 | 0.0 | |
| 356541205 | 768 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.970 | 0.621 | 0.0 | |
| 224068256 | 640 | predicted protein [Populus trichocarpa] | 0.788 | 0.973 | 0.721 | 0.0 | |
| 357502513 | 791 | Pentatricopeptide repeat-containing prot | 0.943 | 0.941 | 0.564 | 0.0 | |
| 224100125 | 513 | predicted protein [Populus trichocarpa] | 0.627 | 0.966 | 0.691 | 0.0 | |
| 3695380 | 508 | F11O4.7 [Arabidopsis thaliana] | 0.620 | 0.964 | 0.669 | 0.0 |
| >gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/791 (70%), Positives = 660/791 (83%), Gaps = 21/791 (2%)
Query: 1 MRHGRKTLSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNS 60
MRHGR S A ++LG +LL+A ++KTL E GTR+ D SIPISE LV+Q+LG+NS
Sbjct: 1 MRHGRTLSSSAAAGAGVKLGDMLLVASISKTLSERGTRSPDLESIPISESLVVQILGRNS 60
Query: 61 LDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAG--FLEEVPSLLNSMQEDDVVVD 118
+D +K++FFRWCS R YKH+ YSHIFR VCRAG FL++VP L++SM++D VVV
Sbjct: 61 IDVFRKVEFFRWCS-FRHNYKHSVGAYSHIFRIVCRAGAEFLDQVPLLMSSMKDDGVVVG 119
Query: 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILF 178
ETFKLLL+ I++GK D A+EILD++EELGT L+ VYDSVLV+L+RK QLGLA+ + F
Sbjct: 120 QETFKLLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALIRKNQLGLALPLFF 179
Query: 179 KLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYG 238
KLL + V +P ACN+LLVALRK+D + EF+ VFE+L+ +K+F+ D G
Sbjct: 180 KLL---GGDEGQGGV--PVPESNACNQLLVALRKADMKIEFRNVFEKLRAKKDFDLDTQG 234
Query: 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLV-----PDLHTYNSLIQVLCVVGKVKDALIV 293
YNICIHAFGCWGDL T+L LFKEMK+K L PDL TYNSLI+VLC+VGKVKDALIV
Sbjct: 235 YNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVGKVKDALIV 294
Query: 294 WEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353
WEELKGSGHEP+ FT+RI+IQGC KSYRMDDAM+IF+EMQYNG PDT+VYN+LL+G+FK
Sbjct: 295 WEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLLDGLFK 354
Query: 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT 413
+RKVMEACQ+FEKMV+DGVR SCWTHNI+I GLFRNGRA A YTLFCDLKKKGKFVDGIT
Sbjct: 355 ARKVMEACQVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKGKFVDGIT 414
Query: 414 FSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIR 473
+SIVVLQLCREGQ+EEAL+LVEEME RGFVVDLVTI+SLLIGFHK GRWD+TERLMKHIR
Sbjct: 415 YSIVVLQLCREGQLEEALQLVEEMEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIR 474
Query: 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533
DGNLV +VL WKA++EA MK+ +S+RKDYTPMFP +G+LSEIMSLI S + E D + GS
Sbjct: 475 DGNLVPNVLNWKANMEAYMKAPQSRRKDYTPMFPSEGNLSEIMSLISSADTEMDGSPGSE 534
Query: 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593
E A+ E D+WSSSPYMD+LA Q+KS SSQL SL+RG RVQ KG+ +FDIDM
Sbjct: 535 EDVAQHE-------DQWSSSPYMDQLASQLKSIDVSSQLLSLSRGQRVQAKGIDSFDIDM 587
Query: 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653
VNT+LSIFLAKGKL+LACKLFEIF++MGV PV YTYNSMM++FVKKGYFN+AWGV +EMG
Sbjct: 588 VNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMG 647
Query: 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF 713
EK CP DIATYNV+IQGLGKMGRADLAS +LD LMKQ GGYLD+VMYNTLIN LGKAGR
Sbjct: 648 EKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQ-GGYLDIVMYNTLINALGKAGRI 706
Query: 714 DEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
DEA LFEQMR+SGINPDVVTFNTLIE++ KAG+LK A+ FLK+MLD+GC+PNHVTDTTL
Sbjct: 707 DEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTL 766
Query: 774 DFLGREIDRLK 784
DFLG+EI++L+
Sbjct: 767 DFLGKEIEKLR 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548135|ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545604|gb|EEF47108.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/771 (69%), Positives = 644/771 (83%), Gaps = 17/771 (2%)
Query: 18 QLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLR 77
QL SILL+AF+ K L ESG RNLDP IP+SEPL+LQ+L +NSLD+SKK++FF+WCS
Sbjct: 48 QLESILLVAFLNKALSESGVRNLDPDFIPLSEPLILQILRQNSLDASKKIEFFKWCS-FS 106
Query: 78 PIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDF 137
YKH+AC YSH+FRTVC AG+ EEV SLLNSM++D +V + TFK LL+ I G DF
Sbjct: 107 HNYKHSACVYSHMFRTVCNAGYFEEVRSLLNSMKDDCAIVGTGTFKFLLDTFINLGNFDF 166
Query: 138 AIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESL 197
A+E+LD MEELGT+L+P++YDSVLV+L RK Q+GLA+SI FKLLE ND D V S+
Sbjct: 167 ALELLDVMEELGTNLNPHMYDSVLVALTRKNQIGLALSIFFKLLETSND--IDIGV--SV 222
Query: 198 PGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLR 257
PG VACN LLVALRK+D R EFK+VF++LK FE D +GYNICIHAFGCW DL T+LR
Sbjct: 223 PGSVACNTLLVALRKADMRVEFKKVFDKLKGMG-FELDTWGYNICIHAFGCWSDLGTALR 281
Query: 258 LFKEMKEKG-----LVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312
LFKEMKEK PDL TYNSLI++LC GKVKDAL+V+EELK SGHEP+ FT+RII
Sbjct: 282 LFKEMKEKSKGFGSCCPDLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRII 341
Query: 313 IQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGV 372
I+GC KSYRM+DA KIFSEMQYNG +PDT VYNSLL+GMFK+RKV EACQLFEKMVQDGV
Sbjct: 342 IEGCSKSYRMNDATKIFSEMQYNGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQDGV 401
Query: 373 RTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALR 432
R S WT+NILIDGL +NGR+ A Y+LFCDLKKKGKFVD IT+SI+VL LCREGQ++EAL
Sbjct: 402 RASSWTYNILIDGLCKNGRSAAGYSLFCDLKKKGKFVDAITYSIIVLLLCREGQLKEALS 461
Query: 433 LVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATM 492
LVEEME RGFVVDLVTI+SLLI FHK GRWD+TE+LMKH+RDGNLV +VL W+AD+EA++
Sbjct: 462 LVEEMEERGFVVDLVTITSLLIAFHKQGRWDWTEKLMKHVRDGNLVPNVLNWQADMEASL 521
Query: 493 KSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLT-NSDEWS 551
K+ +S+RKDYTPMF G LSEI+++I +L+ + +A + G ++ +D+WS
Sbjct: 522 KNPRSRRKDYTPMFLSNGSLSEIINIIRYPDLKNHG----LDDNAVEHGDNISAETDQWS 577
Query: 552 SSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLAC 611
SSPYMD LA+QVKS + SQ FSLARG RVQ KG+ +FDIDMVNTFLSIFLAKGKL++AC
Sbjct: 578 SSPYMDHLANQVKSTDNCSQSFSLARGQRVQAKGVESFDIDMVNTFLSIFLAKGKLSVAC 637
Query: 612 KLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671
KLFEIF+DMGV+PV+YTYNS+MSSFVKKGYF++AW VLN+MGEK CP+DIATYN++IQGL
Sbjct: 638 KLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKVCPSDIATYNLIIQGL 697
Query: 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD 731
GKMGRADLAS++LDKLMKQ GGYLD+VMYNTLIN LGKAGR DE LFEQM+TSGINPD
Sbjct: 698 GKMGRADLASSVLDKLMKQ-GGYLDIVMYNTLINALGKAGRIDEVRKLFEQMKTSGINPD 756
Query: 732 VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREIDR 782
VVT+NTLIEV+ KAGRLK+A+ FLKMMLD+GC PNHVTDTTLDFL +EI++
Sbjct: 757 VVTYNTLIEVHTKAGRLKDAYKFLKMMLDAGCLPNHVTDTTLDFLAKEIEK 807
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570 gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana] gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana] gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/803 (64%), Positives = 634/803 (78%), Gaps = 35/803 (4%)
Query: 1 MRHGRKT--------LSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLV 52
MRHGR + LSP NS QL ++LL+A ++KTL +SGTR+LD SIPISEP+V
Sbjct: 1 MRHGRGSAVSAAISGLSPAKNSPFPQLCNVLLVASLSKTLSQSGTRSLDANSIPISEPVV 60
Query: 53 LQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQE 112
LQ+L +NS+D SKKLDFFRWC SLRP YKH+A YS IFRTVCR G L EVP LL SM+E
Sbjct: 61 LQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKE 120
Query: 113 DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172
D V +D K+LL+ I+SGK + A+ +LDYMEELG L+P+VYDSVL++LV+K +L L
Sbjct: 121 DGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRL 180
Query: 173 AMSILFKLLEACNDNTADNS----VVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228
A+SILFKLLEA ++++ D++ +V LPG VA NELLV LR++D RSEFK+VFE+LK
Sbjct: 181 ALSILFKLLEASDNHSDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKG 240
Query: 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV------PDLHTYNSLIQVLC 282
K F+FD + YNICIH FGCWGDL +L LFKEMKE+ V PD+ TYNSLI VLC
Sbjct: 241 MKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLC 300
Query: 283 VVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV 342
+ GK KDALIVW+ELK SGHEP+ T+RI+IQGCCKSYRMDDAM+I+ EMQYNG +PDT+
Sbjct: 301 LFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTI 360
Query: 343 VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL 402
VYN LL+G K+RKV EACQLFEKMVQ+GVR SCWT+NILIDGLFRNGRAEA +TLFCDL
Sbjct: 361 VYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDL 420
Query: 403 KKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462
KKKG+FVD ITFSIV LQLCREG++E A++LVEEME RGF VDLVTISSLLIGFHK GRW
Sbjct: 421 KKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRW 480
Query: 463 DFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGST 522
D+ E+LMKHIR+GNLV +VL+W A VEA++K +SK KDYTPMFP KG +IMS++GS
Sbjct: 481 DWKEKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYTPMFPSKGSFLDIMSMVGSE 540
Query: 523 NLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQ 582
+ +G + +E S + + D WSSSPYMD+LA Q LF LARG RV+
Sbjct: 541 D----------DGASAEEVSPMED-DPWSSSPYMDQLAHQRN---QPKPLFGLARGQRVE 586
Query: 583 GKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV-NYTYNSMMSSFVKKGY 641
K +FD+DM+NTFLSI+L+KG L+LACKLFEIF MGV + +YTYNSMMSSFVKKGY
Sbjct: 587 AKP-DSFDVDMMNTFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGY 645
Query: 642 FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN 701
F A GVL++M E FC DIATYNV+IQGLGKMGRADLAS +LD+L KQ GGYLD+VMYN
Sbjct: 646 FQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLTKQ-GGYLDIVMYN 704
Query: 702 TLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761
TLIN LGKA R DEA LF+ M+++GINPDVV++NT+IEVN KAG+LKEA+ +LK MLD+
Sbjct: 705 TLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDA 764
Query: 762 GCTPNHVTDTTLDFLGREIDRLK 784
GC PNHVTDT LD+LG+E+++ +
Sbjct: 765 GCLPNHVTDTILDYLGKEMEKAR 787
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445529|ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like [Cucumis sativus] gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/799 (65%), Positives = 633/799 (79%), Gaps = 24/799 (3%)
Query: 1 MRHGR-KTLSPPVNSASLQLGSILLL------AFVTKTLKESGTRNLDPRSIPISEPLVL 53
MRHGR +T + S S ++ L A +TKTL ESGTR L S+PIS PL+L
Sbjct: 1 MRHGRTRTCFLSIESHSRTASTLSHLSHLLLLASITKTLSESGTRTLQHHSLPISHPLLL 60
Query: 54 QVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQED 113
Q+L SL+ S KLDFF+WCS L P + H+ TYS IF +CR+G+L EVP LL+SM+ D
Sbjct: 61 QILHSRSLNPSHKLDFFKWCS-LAPNFNHSPSTYSQIFHILCRSGYLHEVPPLLDSMKRD 119
Query: 114 DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLA 173
V VDS TFK+LL+ I+SGK D A+EILD+ME+LGTSL N Y+SVLV+L+RK Q+GLA
Sbjct: 120 GVSVDSHTFKVLLDAFIRSGKYDAALEILDHMEDLGTSLELNTYNSVLVALLRKNQVGLA 179
Query: 174 MSILFKLLEACNDNTADNSVVES---LPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230
+SI FKLL+ N+ +S + LP +ACNELLVALRK D R EFK+VF++L+ +
Sbjct: 180 LSIFFKLLDGFNNGGQVDSAATTFHFLPNSLACNELLVALRKLDMRVEFKKVFDKLRAIE 239
Query: 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-----PDLHTYNSLIQVLCVVG 285
FEF +YGYNICI+AFGCWG L T+L LFKEMKEK LV PDL TYNS+I VLC+VG
Sbjct: 240 SFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSESFSPDLCTYNSIIHVLCLVG 299
Query: 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYN 345
KVKDALIVWEELKGSGHEP+ FT+RIIIQGCCKS RMDDA IF+EM+YNGLIPDT+VYN
Sbjct: 300 KVKDALIVWEELKGSGHEPDAFTYRIIIQGCCKSCRMDDATMIFNEMEYNGLIPDTIVYN 359
Query: 346 SLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405
SLLNG+FK+RKV EACQLF+KMVQ+ VR S WT+NILIDGLFRNGRAEA YTLFCDLKKK
Sbjct: 360 SLLNGLFKARKVTEACQLFDKMVQEDVRASPWTYNILIDGLFRNGRAEAGYTLFCDLKKK 419
Query: 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFT 465
G+ VD +T+SI++LQLC+E +EEAL+LVEEME RGFVVDL+TI+SLLI HK G+WD
Sbjct: 420 GQIVDAVTYSIIILQLCKERLLEEALQLVEEMEARGFVVDLITITSLLIAMHKQGQWDGL 479
Query: 466 ERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525
ERLMKHIR+G+LV +VLKWK ++E ++K +K+KRKD++ +F K DLSE++S S+ +
Sbjct: 480 ERLMKHIREGDLVPNVLKWKINMEYSIKYQKNKRKDFSSLFSPKEDLSEVISSRASSAAK 539
Query: 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKG 585
+ D E ++ + D WSSSPY+++LA+ S Q FS+ +G R+Q K
Sbjct: 540 VNI-------DNSFENTEERDMDSWSSSPYVNRLANLANSTSDILQPFSIRQGRRIQEKQ 592
Query: 586 MGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQA 645
+FDI+MVNTFLSIFLAKGKLNLACKLFEIF+DMGV+PV YTYNSM+SSFVKKGYF+QA
Sbjct: 593 DNSFDINMVNTFLSIFLAKGKLNLACKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQA 652
Query: 646 WGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705
WG+ NEMGE CP DIATYNV+IQGLGKMGRADLAS++L+KLM+Q GGYLD+VMYNTLIN
Sbjct: 653 WGIFNEMGENVCPADIATYNVIIQGLGKMGRADLASSVLEKLMEQ-GGYLDIVMYNTLIN 711
Query: 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTP 765
LGKAGR D+ N LF QMR SGINPDVVTFNTLIEV+ KAGRLK+A+ FLKMMLDSGC+P
Sbjct: 712 ALGKAGRMDDVNKLFGQMRNSGINPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSGCSP 771
Query: 766 NHVTDTTLDFLGREIDRLK 784
NHVTDTTLDFLGRE+++ +
Sbjct: 772 NHVTDTTLDFLGREMEKAR 790
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814175|ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320808|gb|EFH51230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/801 (64%), Positives = 619/801 (77%), Gaps = 33/801 (4%)
Query: 1 MRHGRKT--------LSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLV 52
MRHGR + LSP NS QL ++LL+A ++KTL +SGTR LD SIPISEP+V
Sbjct: 1 MRHGRGSAVSAAISGLSPATNSPFPQLCNVLLVASLSKTLSQSGTRGLDANSIPISEPVV 60
Query: 53 LQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQE 112
LQ+L +NS+D SKKLDFFRWC SLR YKH+ YS IFRTVCR G L EVP LL SM+E
Sbjct: 61 LQILRRNSIDPSKKLDFFRWCYSLRTGYKHSVSAYSQIFRTVCRTGLLGEVPDLLCSMKE 120
Query: 113 DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172
D V +D K+LL+ I+SGK + A+ +LDYMEELG L+P++YDSVL++L +K +L L
Sbjct: 121 DGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSLYDSVLIALAKKNELRL 180
Query: 173 AMSILFKLLEACNDNTADNS--VVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230
A+SI FKLLEA +++ D S V LPG VA NELLV LR++D RSEFK VFE+LK
Sbjct: 181 ALSIFFKLLEASDNHGDDTSGVTVSYLPGRVAVNELLVGLRRADMRSEFKTVFEKLKGMN 240
Query: 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV------PDLHTYNSLIQVLCVV 284
F+FD + YNICIH FGCWGDL +L LFKEMKE+ V PD+ TYNSLI VLC+
Sbjct: 241 RFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVLCLF 300
Query: 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVY 344
GK KDALIVW+ELK SGHEP+ T+RI+IQGCCKSYRMDDAM+IF EMQYNG +PDTVVY
Sbjct: 301 GKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIFGEMQYNGFVPDTVVY 360
Query: 345 NSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404
N LL+G K+RKV EACQLFEKMVQ+GVR SCWT+NILIDGLFRNGRAEA +TLFCDLKK
Sbjct: 361 NCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKK 420
Query: 405 KGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDF 464
KG+FVD ITFSIVVLQLCREG++EEA++LVEEME RGF VDLVTISSLLIGFHK GRWD+
Sbjct: 421 KGQFVDAITFSIVVLQLCREGKLEEAVKLVEEMETRGFTVDLVTISSLLIGFHKQGRWDW 480
Query: 465 TERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNL 524
E+LMKH+R+GNLV +VL+W A VEA++K + K KDYTPMFP KG +IMS++G L
Sbjct: 481 KEKLMKHVREGNLVPNVLRWNAGVEASLKRPQRKDKDYTPMFPSKGSFLDIMSMVG---L 537
Query: 525 ETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGK 584
E D A+ E D WSSSPYMD+LA Q LF LARG RV+ K
Sbjct: 538 EDDG--------ARAEEVPPMEDDPWSSSPYMDQLAHQSN---RPKPLFGLARGQRVEAK 586
Query: 585 GMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV-NYTYNSMMSSFVKKGYFN 643
+FD+DM+NTFLSI+L+KG L+LACKLFEIF MGV + +YTYNSMMSSFVKKGYF
Sbjct: 587 P-DSFDVDMMNTFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGYFK 645
Query: 644 QAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703
GVL++MGE FC DIATYNV+IQGLGKMGRADLA +LD+L KQ GGYLD+VMYNTL
Sbjct: 646 TVRGVLDQMGENFCAADIATYNVIIQGLGKMGRADLAGAVLDRLTKQ-GGYLDIVMYNTL 704
Query: 704 INVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGC 763
IN +GKA R D A LF+ M+++GINPDVV++NT+IEVN KAG+LKEA+ +LK MLD+GC
Sbjct: 705 INAIGKANRLDAATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGC 764
Query: 764 TPNHVTDTTLDFLGREIDRLK 784
PNHVTDT LD+LG+E+++ +
Sbjct: 765 LPNHVTDTILDYLGKEMEKAR 785
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/775 (62%), Positives = 604/775 (77%), Gaps = 30/775 (3%)
Query: 18 QLGSILLLAFVTKTLKES--GTRNLDPR-SIPISEPLVLQVLGKNSLDSSKKLDFFRWCS 74
QLG +L+ A +T TL S T NL P ++ +++PL+L++L + +S KL FF W
Sbjct: 6 QLGEVLVAASITNTLSHSHSATINLPPNLALGLTQPLILKILSNPAHHASHKLRFFEWS- 64
Query: 75 SLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGK 134
R + + YS I RT+ R GF ++PSLL+SM + VV+D + LL I S
Sbjct: 65 --RSHHCPSPAAYSVILRTLSREGFYSDIPSLLHSMTQAGVVLDPHSLNHLLRSFIISSN 122
Query: 135 IDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194
+ A+++LDY++ L SP +Y+S+LV+L+ K QL LA+SI FKLL A + +
Sbjct: 123 FNLALQLLDYVQHLHLDPSP-IYNSLLVALLEKNQLTLALSIFFKLLGAVDSKS------ 175
Query: 195 ESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHT 254
ACN+LLVALRK+D R EF+QVF+RL+E++ F FD +GYN+CIHAFGCWGDL T
Sbjct: 176 -----ITACNQLLVALRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLAT 230
Query: 255 SLRLFKEMK--EKGLV-PDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRI 311
LFKEMK KG V PDL TYNSLI LC +GKV DA+ V+EEL GS H+P+ FT+
Sbjct: 231 CFALFKEMKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTN 290
Query: 312 IIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371
+IQ C K+YRM+DA++IF++MQ NG PDT+ YNSLL+G FK+ KVMEACQLFEKMVQ+G
Sbjct: 291 LIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEG 350
Query: 372 VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEAL 431
VR SCWT+NILI GLFRNGRAEAAYT+FCDLKKKG+FVDGIT+SIVVLQLC+EGQ+EEAL
Sbjct: 351 VRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEAL 410
Query: 432 RLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEAT 491
+LVEEME RGFVVDLVTI+SLLI H++GRWD+T+RLMKHIR+G+L L VLKWKA +EA+
Sbjct: 411 QLVEEMESRGFVVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLALSVLKWKAGMEAS 470
Query: 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWS 551
MK+ K+KDY+P+FP KGD +I++ + T + N+ GE ++ +E DEWS
Sbjct: 471 MKNPPGKKKDYSPLFPSKGDFIDIINFM--TCAQDTTNINDGEENSCNE------IDEWS 522
Query: 552 SSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLAC 611
SSP+MDKLA+QV S +SSQ+F+ +RG RVQ KG +FD+DMVNTFLSIFLAKGKL+LAC
Sbjct: 523 SSPHMDKLANQVSSTGYSSQMFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLAC 582
Query: 612 KLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671
KLFEIF+D GV PV+YTYNS+MSSFVKKGYF +AW +L EMGEKFCPTDIATYN++IQGL
Sbjct: 583 KLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGL 642
Query: 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD 731
GKMGRADLAS +LD+L++Q GGYLD+VMYNTLIN LGKA R DE N LFEQMR+SGINPD
Sbjct: 643 GKMGRADLASAVLDRLLRQ-GGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPD 701
Query: 732 VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLKDQ 786
VVT+NTLIEV+ KAGRLK+A+ FLKMMLD+GC+PNHVTDTTLD+LGREID+L+ Q
Sbjct: 702 VVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVTDTTLDYLGREIDKLRYQ 756
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/636 (72%), Positives = 534/636 (83%), Gaps = 13/636 (2%)
Query: 156 VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR 215
+YDS++V+L +K Q+GLA+SI+FKLLEA +D +N+V SLPG VACN LLVALR +
Sbjct: 1 MYDSIIVALAKKNQVGLALSIMFKLLEA-SDGNEENAVGVSLPGSVACNALLVALRNGEM 59
Query: 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-----PD 270
+ EFK VF +L+ + FE + +GYNICIHAFGCWGDL TSLRLFKEMKEK L PD
Sbjct: 60 KVEFKTVFAKLRGKGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPD 119
Query: 271 LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFS 330
L TYNSLI VLC+ GKVKDA+IV+EELK SGHEP+ FT+RI+IQGCCKSY+M+DA KIFS
Sbjct: 120 LCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFS 179
Query: 331 EMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNG 390
EMQYNG +PDTVVYNSLL+GMFK+RKVMEACQLFEKMVQDGVR SCWT+NILIDGL +NG
Sbjct: 180 EMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNG 239
Query: 391 RAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTIS 450
RAEA Y LFC LKKKG+FVD +T+SIVVL LCR+G +EEAL LVEEME RGFVVDL+TI+
Sbjct: 240 RAEAGYNLFCGLKKKGQFVDAVTYSIVVLLLCRKGHLEEALHLVEEMEERGFVVDLITIT 299
Query: 451 SLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKG 510
SLLI FHK GRWD TERLMKHIRD NL+ +VLKW+AD+EA++K+ R+DYTPMFP G
Sbjct: 300 SLLIAFHKQGRWDCTERLMKHIRDVNLLPNVLKWRADMEASLKNPPRSREDYTPMFPSTG 359
Query: 511 DLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSS 570
L EIMS I S +D +G +DE S ++D+WSSSPYMD LA+Q KS SS
Sbjct: 360 GLQEIMSSISSPKSRSD------DGATEDEKSSSADTDQWSSSPYMDHLANQAKSTDLSS 413
Query: 571 QLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN 630
QLFSLARG RVQ KG G+FDIDMVNTFLSIFLAKGKL+LACKLFEIFTDMGV PV+YTYN
Sbjct: 414 QLFSLARGQRVQAKGAGSFDIDMVNTFLSIFLAKGKLSLACKLFEIFTDMGVDPVSYTYN 473
Query: 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690
S+MSSFVKKGYFN+AW V NEMGEK CP DIATYN+VIQGLGKMGRADLAS++LDKLMKQ
Sbjct: 474 SIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRADLASSVLDKLMKQ 533
Query: 691 GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKE 750
GGYLD+VMYNTLI+ LGKAGR DEAN LFEQM+ SG+NPDVVT+N +IEV+ K GRLK+
Sbjct: 534 -GGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNIMIEVHSKTGRLKD 592
Query: 751 AHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLKDQ 786
A+ FLKMMLD+GC PNHVTDTTLDFL +EI++L+ Q
Sbjct: 593 AYKFLKMMLDAGCLPNHVTDTTLDFLAKEIEKLRYQ 628
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502513|ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat [Medicago truncatula] gi|355496560|gb|AES77763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/790 (56%), Positives = 585/790 (74%), Gaps = 45/790 (5%)
Query: 18 QLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLR 77
Q+ +L +A +TKTL ++ T+ P +++ L+ ++L SL S KL+FF +++
Sbjct: 14 QVSELLTVASITKTLSKNPTQT--PPQTNLTQTLIHKILSNPSLHISHKLNFFNSNNNIH 71
Query: 78 PIYKHTACTYSHIFRTVCR-----AGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKS 132
H++ +YS IF +C + + +P LL+SM+++ +V DS +F LL IK
Sbjct: 72 ----HSSLSYSLIFNNLCNPKTPFSLLHQHLPHLLHSMKQNGIVFDSNSFNTLLNFLIKF 127
Query: 133 G--------KIDFAIEILDYMEELG---TSLSPNVYDSVLVSLVRKKQLGLAMSILFKLL 181
G F I+ILDY++ +P +Y+S+L++ ++ Q+ LA+SI ++
Sbjct: 128 GVSHNNNSKNFHFVIDILDYIQTQNLHPVDTTPFIYNSLLIASIKNNQIPLALSIFNNIM 187
Query: 182 EACNDN--TADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGY 239
+D+ D+ +V S N LL LRK+ + EF+ VF RL+E+K F+FD++GY
Sbjct: 188 TLGDDDCLNLDSVIVGS------SNYLLSVLRKARMKKEFENVFNRLRERKSFDFDLWGY 241
Query: 240 NICIHAFGCWGDLHTSLRLFKEMKE-KGLV-PDLHTYNSLIQVLCVVGKVKDALIVWEEL 297
NICIHAFG WGDL TS++LF EMKE K L PD+ TYNS++ VLC VGK+ DALIVW+EL
Sbjct: 242 NICIHAFGSWGDLVTSMKLFNEMKEDKNLFGPDMCTYNSVLSVLCKVGKINDALIVWDEL 301
Query: 298 KGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV 357
KG G+EP+EFT+ I+++GCC++YRMD A++IF+EM+ NG P +VYN +L+G+FK+ KV
Sbjct: 302 KGCGYEPDEFTYTILVRGCCRTYRMDVALRIFNEMKDNGFRPGVLVYNCVLDGLFKAAKV 361
Query: 358 MEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417
E CQ+FEKM Q+GV+ SC T+NILI GL +NGR+EA Y LFCDLKKKG+FVDGIT+SIV
Sbjct: 362 NEGCQMFEKMAQEGVKASCSTYNILIHGLIKNGRSEAGYMLFCDLKKKGQFVDGITYSIV 421
Query: 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477
VLQLC+EG +EEAL LVEEME RGF VDLVTI+SLLIG HKYGRW++T+RL+KH+R+G+L
Sbjct: 422 VLQLCKEGLLEEALELVEEMEARGFSVDLVTITSLLIGIHKYGRWEWTDRLIKHVREGDL 481
Query: 478 VLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537
+ VL+WKA +EA++ + SK KDY+ MFP KG EIMS I + E D S E
Sbjct: 482 LPGVLRWKAGMEASINNFHSKEKDYSSMFPSKGGFCEIMSFITRSRDEDDEVETSSE--- 538
Query: 538 KDEGSQLTNSDEWSSSPYMDKLADQ-VKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNT 596
DEWSSSP+MDKLA + V S ++S++F+ RG RVQ KG +FDIDMVNT
Sbjct: 539 --------QIDEWSSSPHMDKLAKRVVNSTGNASRMFTPDRGQRVQQKGSDSFDIDMVNT 590
Query: 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKF 656
FLSIFL+KGKL+LACKLFEIFTD GV PV+YTYNS+MSSFVKKGYFN+AW +L+EMGEK
Sbjct: 591 FLSIFLSKGKLSLACKLFEIFTDAGVDPVSYTYNSIMSSFVKKGYFNEAWAILSEMGEKL 650
Query: 657 CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA 716
CPTDIATYN++IQGLGKMGRADLAS +LD L+KQ GGYLD+VMYNTLIN LGKAGR DE
Sbjct: 651 CPTDIATYNMIIQGLGKMGRADLASAVLDGLLKQ-GGYLDIVMYNTLINALGKAGRIDEV 709
Query: 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFL 776
N FEQM++SGINPDVVT+NTLIE++ KAGRLK+A+ FLKMM+D+GCTPNHVTDTTLD+L
Sbjct: 710 NKFFEQMKSSGINPDVVTYNTLIEIHSKAGRLKDAYKFLKMMIDAGCTPNHVTDTTLDYL 769
Query: 777 GREIDRLKDQ 786
REID+L+ Q
Sbjct: 770 VREIDKLRYQ 779
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100125|ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/503 (69%), Positives = 425/503 (84%), Gaps = 7/503 (1%)
Query: 19 LGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRP 78
+G+ILL+A++TKTL ESGTR+LDP SIP+SE LVLQ+L +NSLDSSKK++FF+WCS +R
Sbjct: 1 MGNILLVAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCS-VRH 59
Query: 79 IYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFA 138
IYKH+ TYS +F T+CR+G+LEEVP LLNSM+ D VVV SETFKLLL+ I+SGK D A
Sbjct: 60 IYKHSVSTYSQMFSTLCRSGYLEEVPDLLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSA 119
Query: 139 IEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198
++ILD+MEELG++ +P++YDS++V+L +K Q+GLA+SI+FKLLEA +D +N+V SLP
Sbjct: 120 LDILDHMEELGSNPNPHMYDSIIVALAKKNQVGLALSIMFKLLEA-SDGNEENAVGVSLP 178
Query: 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRL 258
G VACN LLVALR + + EFK VF +L+ + FE + +GYNICIHAFGCWGDL TSLRL
Sbjct: 179 GSVACNALLVALRNGEMKVEFKTVFAKLRGKVGFELNTWGYNICIHAFGCWGDLTTSLRL 238
Query: 259 FKEMKEKGLV-----PDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIII 313
FKEMKEK L PDL TYNSLI VLC+ GKVKDA+IV+EELK SGHEP+ FT+RI+I
Sbjct: 239 FKEMKEKSLASGSLDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILI 298
Query: 314 QGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVR 373
QGCCKSY+M+D+ KIFSEMQYNG +PDTVVYNSLL+GMFK+RKVMEACQLFEKMVQDGVR
Sbjct: 299 QGCCKSYQMEDSTKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVR 358
Query: 374 TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRL 433
SCWT+NILIDGL +NGRAEA Y LFC LKKKG+FVD +T+SIVVL LCR+G +E+AL L
Sbjct: 359 ASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAVTYSIVVLLLCRKGHLEDALHL 418
Query: 434 VEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMK 493
VEEME RGFVVDL+TI+SLLI FHK GRWD TERLMKHIRD NL+ +VLKW+AD+EA++K
Sbjct: 419 VEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKHIRDVNLLPNVLKWRADMEASLK 478
Query: 494 SRKSKRKDYTPMFPYKGDLSEIM 516
+ R+D+TPMFP G L EIM
Sbjct: 479 NPPRSREDHTPMFPSTGGLQEIM 501
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/508 (66%), Positives = 408/508 (80%), Gaps = 18/508 (3%)
Query: 1 MRHGRKT--------LSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLV 52
MRHGR + LSP NS QL ++LL+A ++KTL +SGTR+LD SIPISEP+V
Sbjct: 1 MRHGRGSAVSAAISGLSPAKNSPFPQLCNVLLVASLSKTLSQSGTRSLDANSIPISEPVV 60
Query: 53 LQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQE 112
LQ+L +NS+D SKKLDFFRWC SLRP YKH+A YS IFRTVCR G L EVP LL SM+E
Sbjct: 61 LQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKE 120
Query: 113 DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172
D V +D K+LL+ I+SGK + A+ +LDYMEELG L+P+VYDSVL++LV+K +L L
Sbjct: 121 DGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRL 180
Query: 173 AMSILFKLLEACNDNTADNS----VVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228
A+SILFKLLEA ++++ D++ +V LPG VA NELLV LR++D RSEFK+VFE+LK
Sbjct: 181 ALSILFKLLEASDNHSDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKG 240
Query: 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV------PDLHTYNSLIQVLC 282
K F+FD + YNICIH FGCWGDL +L LFKEMKE+ V PD+ TYNSLI VLC
Sbjct: 241 MKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLC 300
Query: 283 VVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV 342
+ GK KDALIVW+ELK SGHEP+ T+RI+IQGCCKSYRMDDAM+I+ EMQYNG +PDT+
Sbjct: 301 LFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTI 360
Query: 343 VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL 402
VYN LL+G K+RKV EACQLFEKMVQ+GVR SCWT+NILIDGLFRNGRAEA +TLFCDL
Sbjct: 361 VYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDL 420
Query: 403 KKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462
KKKG+FVD ITFSIV LQLCREG++E A++LVEEME RGF VDLVTISSLLIGFHK GRW
Sbjct: 421 KKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRW 480
Query: 463 DFTERLMKHIRDGNLVLDVLKWKADVEA 490
D+ E+LMKHIR+GNLV +VL+W A VEA
Sbjct: 481 DWKEKLMKHIREGNLVPNVLRWNAGVEA 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | ||||||
| TAIR|locus:2133352 | 805 | AT4G01570 [Arabidopsis thalian | 0.963 | 0.945 | 0.657 | 2.4e-273 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.705 | 0.639 | 0.274 | 1.6e-48 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.832 | 0.591 | 0.241 | 3.7e-35 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.810 | 0.657 | 0.235 | 6.9e-37 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.505 | 0.529 | 0.246 | 6.1e-32 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.493 | 0.590 | 0.256 | 2.9e-29 | |
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.446 | 0.549 | 0.275 | 1.2e-26 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.487 | 0.528 | 0.261 | 2.2e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.664 | 0.833 | 0.265 | 1.2e-42 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.767 | 0.739 | 0.226 | 2.1e-31 |
| TAIR|locus:2133352 AT4G01570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2628 (930.2 bits), Expect = 2.4e-273, P = 2.4e-273
Identities = 518/788 (65%), Positives = 628/788 (79%)
Query: 8 LSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSSKKL 67
LSP NS QL ++LL+A ++KTL +SGTR+LD SIPISEP+VLQ+L +NS+D SKKL
Sbjct: 16 LSPAKNSPFPQLCNVLLVASLSKTLSQSGTRSLDANSIPISEPVVLQILRRNSIDPSKKL 75
Query: 68 DFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLE 127
DFFRWC SLRP YKH+A YS IFRTVCR G L EVP LL SM+ED V +D K+LL+
Sbjct: 76 DFFRWCYSLRPGYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKEDGVNLDQTMAKILLD 135
Query: 128 PCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDN 187
I+SGK + A+ +LDYMEELG L+P+VYDSVL++LV+K +L LA+SILFKLLEA +++
Sbjct: 136 SLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEASDNH 195
Query: 188 TADNS----VVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICI 243
+ D++ +V LPG VA NELLV LR++D RSEFK+VFE+LK K F+FD + YNICI
Sbjct: 196 SDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYNICI 255
Query: 244 HAFGCWGDLHTSLRLFKEMKEKGLV------PDLHTYNSLIQVLCVVGKVKDALIVWEEL 297
H FGCWGDL +L LFKEMKE+ V PD+ TYNSLI VLC+ GK KDALIVW+EL
Sbjct: 256 HGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDEL 315
Query: 298 KGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV 357
K SGHEP+ T+RI+IQGCCKSYRMDDAM+I+ EMQYNG +PDT+VYN LL+G K+RKV
Sbjct: 316 KVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKV 375
Query: 358 MEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417
EACQLFEKMVQ+GVR SCWT+NILIDGLFRNGRAEA +TLFCDLKKKG+FVD ITFSIV
Sbjct: 376 TEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIV 435
Query: 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477
LQLCREG++E A++LVEEME RGF VDLVTISSLLIGFHK GRWD+ E+LMKHIR+GNL
Sbjct: 436 GLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNL 495
Query: 478 VLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537
V +VL+W A VEA++K +SK KDYTPMFP KG +IMS++GS E D G +
Sbjct: 496 VPNVLRWNAGVEASLKRPQSKDKDYTPMFPSKGSFLDIMSMVGS---EDD-------GAS 545
Query: 538 KDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTF 597
+E S + + D WSSSPYMD+LA Q LF LARG RV+ K +FD+DM+NTF
Sbjct: 546 AEEVSPMED-DPWSSSPYMDQLAHQRNQP---KPLFGLARGQRVEAKP-DSFDVDMMNTF 600
Query: 598 LSIFLAKGKLNLACKLFEIFTDMGVHPV-NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKF 656
LSI+L+KG L+LACKLFEIF MGV + +YTYNSMMSSFVKKGYF A GVL++M E F
Sbjct: 601 LSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGYFQTARGVLDQMFENF 660
Query: 657 CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA 716
C DIATYNV+IQGLGKMGRADLAS +LD+L KQGG YLD+VMYNTLIN LGKA R DEA
Sbjct: 661 CAADIATYNVIIQGLGKMGRADLASAVLDRLTKQGG-YLDIVMYNTLINALGKATRLDEA 719
Query: 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFL 776
LF+ M+++GINPDVV++NT+IEVN KAG+LKEA+ +LK MLD+GC PNHVTDT LD+L
Sbjct: 720 TQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTILDYL 779
Query: 777 GREIDRLK 784
G+E+++ +
Sbjct: 780 GKEMEKAR 787
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 1.6e-48, P = 1.6e-48
Identities = 157/571 (27%), Positives = 276/571 (48%)
Query: 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265
L+ K R + + +K + DI YN+CI +FG G + + + F E++
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSSS-LDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267
Query: 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA 325
GL PD TY S+I VLC ++ +A+ ++E L+ + P + + +I G + + D+A
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA 327
Query: 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDG 385
+ + G IP + YN +L + K KV EA ++FE+M +D + T+NILID
Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDM 386
Query: 386 LFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445
L R G+ + A+ L ++K G F + T +I+V +LC+ +++EA + EEM+ + D
Sbjct: 387 LCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPD 446
Query: 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMK-SRKSK-RKDYT 503
+T SL+ G K GR D ++ + + D + + + + + ++ RK K Y
Sbjct: 447 EITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYK 506
Query: 504 PMFPYKGDLSEIMSLIGSTNLETDANLGSGE-GDAKDEGSQLTNSDEWSSSPYMDKLADQ 562
M + S + L+ +T ++ G E G A E + + S Y +
Sbjct: 507 DMI--NQNCSPDLQLL-NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS-YSILIHGL 562
Query: 563 VKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV 622
+K+ +++ + L ++ QG D N + F GK+N A +L E G
Sbjct: 563 IKAG-FANETYELFYSMKEQGC---VLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF 618
Query: 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLAST 682
P TY S++ K ++A+ + E K ++ Y+ +I G GK+GR D A
Sbjct: 619 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYL 678
Query: 683 ILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVN 742
IL++LM Q G ++ +N+L++ L KA +EA + F+ M+ P+ VT+ LI
Sbjct: 679 ILEELM-QKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGL 737
Query: 743 GKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
K + +A F + M G P+ ++ TT+
Sbjct: 738 CKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 3.7e-35, P = 3.7e-35
Identities = 169/700 (24%), Positives = 306/700 (43%)
Query: 81 KHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE 140
K TA TY ++G M+ + + L K+G+ A +
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQ 489
Query: 141 ILDYMEELGTSLSPNVYDSVLVSLVRK--KQLGLAMSILFKLLEACNDNTADNSVVESLP 198
I ++++G L P DSV +++ K ++G + KLL +N + P
Sbjct: 490 IFYGLKDIG--LVP---DSVTYNMMMKCYSKVG-EIDEAIKLLSEMMENGCE-------P 536
Query: 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRL 258
+ N L+ L K+DR E ++F R+KE K + + YN + G G + ++ L
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIEL 595
Query: 259 FKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318
F+ M +KG P+ T+N+L LC +V AL + ++ G P+ FT+ II G K
Sbjct: 596 FEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVK 655
Query: 319 SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQ---DGVRTS 375
+ ++ +AM F +M+ + PD V +LL G+ K+ + +A ++ + D
Sbjct: 656 NGQVKEAMCFFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANL 714
Query: 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQL-CREGQIEEALRLV 434
W LI + + A + L G DG + + +++ C+ + A L
Sbjct: 715 FWED--LIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLF 772
Query: 435 EEM-EGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMK 493
E+ + G L T + L+ G + + + + ++ + DV + ++A K
Sbjct: 773 EKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGK 832
Query: 494 SRKSKR--KDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWS 551
S K + Y M ++ + + I I + L N+ DA D L + ++S
Sbjct: 833 SGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVD----DALDLYYDLMSDRDFS 888
Query: 552 SS-----PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK 606
+ P +D L+ + + QLF G+ G + + N ++ F G+
Sbjct: 889 PTACTYGPLIDGLSKSGRL-YEAKQLFE---GMLDYGCRP---NCAIYNILINGFGKAGE 941
Query: 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666
+ AC LF+ GV P TY+ ++ G ++ E+ E D+ YN+
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726
+I GLGK R + A + +++ G D+ YN+LI LG AG +EA ++ +++ +
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 727 GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766
G+ P+V TFN LI +G+ + A+ + M+ G +PN
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 160/679 (23%), Positives = 298/679 (43%)
Query: 107 LNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL---VS 163
++S + + +DS +F L L+ C G + A+ +++ M E ++ V+ S++
Sbjct: 87 VDSQKVTEQKLDSFSF-LALDLC-NFGSFEKALSVVERMIERNWPVA-EVWSSIVRCSQE 143
Query: 164 LVRKKQLGLAMSILFK------LLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS 217
V K G+ ILF +E + + +E +P C LL AL + +R
Sbjct: 144 FVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD 203
Query: 218 EFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLR-LFKEMKEKGLVPDLHTYNS 276
F V++ + E + FD+ Y++ I A G++ LFK KE L+ +
Sbjct: 204 LFWDVYKGMVE-RNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTAT-LNVDGA 261
Query: 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG 336
L K+K+++I G P ++T+ ++I G CK R++DA + EM G
Sbjct: 262 L--------KLKESMIC------KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLG 307
Query: 337 LIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAY 396
+ D Y+ L++G+ K R A L +MV G+ + ++ I + + G E A
Sbjct: 308 VSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAK 367
Query: 397 TLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456
LF + G ++ ++ CRE + + L+ EM+ R V+ T +++ G
Sbjct: 368 ALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGM 427
Query: 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIM 516
G D ++K + +V+ + ++ +++ S+ D M K ++ E
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN--SRFGD--AMRVLK-EMKE-Q 481
Query: 517 SLIGSTNLETDANLGSGEGDAKDEG-SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575
+ +G + DE S L E P + +S+ S
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541
Query: 576 ARGLRVQGKGMGTFDIDMVNT-FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMS 634
+ ++ + + G ++ T ++ + KGK+ AC + D G+ TY +M+
Sbjct: 542 DKYVK-EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMN 600
Query: 635 SFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY 694
K + A + EM K D+ +Y V+I G K+G AS+I D+++++G
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYF 754
+V++YN L+ ++G ++A L ++M G++P+ VT+ T+I+ K+G L EA
Sbjct: 661 -NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 755 LKMMLDSGCTPNHVTDTTL 773
M G P+ TTL
Sbjct: 720 FDEMKLKGLVPDSFVYTTL 738
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 6.1e-32, P = 6.1e-32
Identities = 102/414 (24%), Positives = 201/414 (48%)
Query: 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYM 145
T++ + + G L+ + M E + + +++ K G+++ A+ + M
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 146 EELGTSLSPNVYD-SVLVS-LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVAC 203
P+ Y + LV+ L + + A+ I+ +L+ D P
Sbjct: 286 SNQD-GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD-----------PDVYTY 333
Query: 204 NELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263
N ++ L K E +V +++ ++ + YN I + + L + +
Sbjct: 334 NSVISGLCKLGEVKEAVEVLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMD 323
KG++PD+ T+NSLIQ LC+ + A+ ++EE++ G EP+EFT+ ++I C ++D
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452
Query: 324 DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILI 383
+A+ + +M+ +G + YN+L++G K+ K EA ++F++M GV + T+N LI
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512
Query: 384 DGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443
DGL ++ R E A L + +G+ D T++ ++ CR G I++A +V+ M G
Sbjct: 513 DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572
Query: 444 VDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKS 497
D+VT +L+ G K GR + +L++ I+ + L + ++ + RK+
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKT 626
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 105/410 (25%), Positives = 200/410 (48%)
Query: 52 VLQVLGKNSLDSSKKLDFFRWC--SSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNS 109
VL V+ L + L+F+ + S++ +++ + + +C+ F++ +
Sbjct: 154 VLNVIINEGL-YHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRG 212
Query: 110 MQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQ 169
M E + D T+ L++ K +ID A+ +LD M+ G S SP +Y+ ++ L +K
Sbjct: 213 MPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272
Query: 170 LGLAMSILFKLLEACNDNTADNSVVES-LPGCVACNELLVALRKSDRRSEFKQVFERLKE 228
L + + KL+ DN ++ +P V N L+ L + + + ER+
Sbjct: 273 L----TRVTKLV--------DNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS 320
Query: 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK 288
K D+ Y I+ ++RL M+E+G + H Y+ LI L GK +
Sbjct: 321 SKCIPNDVT-YGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379
Query: 289 DALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLL 348
+A+ +W ++ G +PN + +++ G C+ + ++A +I + M +G +P+ Y+SL+
Sbjct: 380 EAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439
Query: 349 NGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKF 408
G FK+ EA Q++++M + G + + +++LIDGL GR + A ++ + G
Sbjct: 440 KGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK 499
Query: 409 VDGITFSIVVLQLCREGQIEEALRLVEEM---EGRGFVVDLVTISSLLIG 455
D + +S ++ LC G ++ AL+L EM E D+VT + LL G
Sbjct: 500 PDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDG 549
|
|
| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 102/370 (27%), Positives = 181/370 (48%)
Query: 87 YSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYME 146
Y+ + + G +E+ L M+ T+ L++ K+G++D A Y +
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGF--YKD 328
Query: 147 ELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKL--LEACNDNTADNSVVESLPGCVACN 204
L L+P+V L +L M+IL K+ +E + ++ + P V+ N
Sbjct: 329 MLRDGLTPDVV--FLNNL---------MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYN 377
Query: 205 ELLVALRKSDRR-SEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263
++ AL +S SE F+++K + + Y+I I + + +L L +EM
Sbjct: 378 TVIKALFESKAHVSEVSSWFDKMKADSVSPSE-FTYSILIDGYCKTNRVEKALLLLEEMD 436
Query: 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMD 323
EKG P Y SLI L + + A +++ELK + + + ++I+ K ++
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Query: 324 DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILI 383
+A+ +F+EM+ G PD YN+L++GM K+ + EA L KM ++G R +HNI++
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 384 DGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443
+G R G A +F +K G DG+T++ ++ G EEA R++ EM+ +GF
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFE 616
Query: 444 VDLVTISSLL 453
D +T SS+L
Sbjct: 617 YDAITYSSIL 626
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 105/401 (26%), Positives = 195/401 (48%)
Query: 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYM 145
T + + +C+ G +E+V + L+ +QE V D T+ L+ G ++ A E+++ M
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296
Query: 146 EELGTSLSPNVY--DSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVAC 203
G SP VY ++V+ L + + A + ++L + + D++ SL
Sbjct: 297 P--GKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS--GLSPDSTTYRSL------ 346
Query: 204 NELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263
L+ A +K D E ++VF ++ ++ D+ ++ + F G+L +L F +K
Sbjct: 347 --LMEACKKGDV-VETEKVFSDMRS-RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVK 402
Query: 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMD 323
E GL+PD Y LIQ C G + A+ + E+ G + T+ I+ G CK +
Sbjct: 403 EAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLG 462
Query: 324 DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILI 383
+A K+F+EM L PD+ L++G K + A +LF+KM + +R T+N L+
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522
Query: 384 DGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443
DG + G + A ++ D+ K I++SI+V LC +G + EA R+ +EM +
Sbjct: 523 DGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Query: 444 VDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKW 484
++ +S++ G+ + G E ++ + V D + +
Sbjct: 583 PTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 146/550 (26%), Positives = 262/550 (47%)
Query: 222 VFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281
+F + + + F I ++ + A + L ++M+ G+ + +TY+ LI
Sbjct: 68 LFGEMVKSRPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCF 126
Query: 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDT 341
C ++ AL V ++ G+EPN T ++ G C S R+ +A+ + +M G P+T
Sbjct: 127 CRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 186
Query: 342 VVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCD 401
V +N+L++G+F K EA L ++MV G + T+ ++++GL + G + A+ L
Sbjct: 187 VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 246
Query: 402 LKKKGKFVDGIT-FSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYG 460
+++ GK G+ ++ ++ LC+ +++AL L +EME +G ++VT SSL+ YG
Sbjct: 247 MEQ-GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305
Query: 461 RWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRK--SKRKDYTPMFPYKGDLSEIMSL 518
RW RL+ + + + DV + A ++A +K K K Y M D S I++
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS-IVTY 364
Query: 519 IGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQ--VKSDCHSSQL---F 573
N G D DE Q+ S + D + +K C ++
Sbjct: 365 SSLIN-------GFCMHDRLDEAKQMFEFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 574 SLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM 633
+ R + +G T +++ +F A G ++A ++F+ GV P TYN+++
Sbjct: 417 EVFREMSQRGLVGNTVTYNIL--IQGLFQA-GDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Query: 634 SSFVKKGYFNQAWGVLNEMGE-KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG 692
K G +A V + K PT I TYN++I+G+ K G+ + + L +G
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPT-IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAH 752
DVV YNT+I+ + G +EA+ LF++M+ G P+ +NTLI + G + +
Sbjct: 533 KP-DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 753 YFLKMMLDSG 762
+K M G
Sbjct: 592 ELIKEMRSCG 601
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 144/635 (22%), Positives = 277/635 (43%)
Query: 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN 155
+ G + ++ N +QED +D ++ L+ SG+ A+ + MEE G +
Sbjct: 185 KEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLI 244
Query: 156 VYDSVLVSLVRKKQLGLAMSILFKLLEAC-NDNTADNSVVESLPGCVACNELLVALRKSD 214
Y+ V++++ K +G + + L+E +D A P N L+ ++
Sbjct: 245 TYN-VILNVFGK--MGTPWNKITSLVEKMKSDGIA--------PDAYTYNTLITCCKRGS 293
Query: 215 RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274
E QVFE +K F +D YN + +G ++++ EM G P + TY
Sbjct: 294 LHQEAAQVFEEMKAAG-FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334
NSLI G + +A+ + ++ G +P+ FT+ ++ G ++ +++ AM IF EM+
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 335 NGLIPDTVVYNSLLNGMFKSR-KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAE 393
G P+ +N+ + M+ +R K E ++F+++ G+ T N L+ +NG
Sbjct: 413 AGCKPNICTFNAFIK-MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471
Query: 394 AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLL 453
+F ++K+ G + TF+ ++ R G E+A+ + M G DL T +++L
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531
Query: 454 IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513
+ G W+ +E+++ + DG + L + + + A ++ Y G +
Sbjct: 532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI- 590
Query: 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQ-LTNSDEWSSSPYMDKLADQVKSDCHSSQL 572
E +++ T + L + D E + + E SP + L V S Q+
Sbjct: 591 EPRAVLLKTLV-----LVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV-SIYGRRQM 644
Query: 573 FSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM---GVHPVNYTY 629
+ A G+ K G F M T+ S+ + K EI ++ G+ P +Y
Sbjct: 645 VAKANGVLDYMKERG-FTPSMA-TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702
Query: 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689
N+++ ++ + A + +EM D+ TYN I + A ++ ++K
Sbjct: 703 NTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724
G + YN++++ K R DEA + E +R
Sbjct: 763 HGCRP-NQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZE4 | PP299_ARATH | No assigned EC number | 0.6488 | 0.9721 | 0.9540 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 790 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 8e-15
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLI 739
DVV YNTLI+ K G+ +EA LF +M+ GI P+V T++ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 7e-14
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 269 PDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318
PD+ TYN+LI C GKV++AL ++ E+K G +PN +T+ I+I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-13
Identities = 83/415 (20%), Positives = 171/415 (41%), Gaps = 73/415 (17%)
Query: 68 DFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLE 127
+ FR+ +R T T++ + + ++ +L +QE + D + + L+
Sbjct: 424 EAFRFAKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480
Query: 128 PCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL-------GLAMS----- 175
C KSGK+D E+ M G + + + +++ R Q+ G+ S
Sbjct: 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540
Query: 176 --ILFK-LLEACNDNTADNSVVESL-----------PGCVACNELLVALRKSDRRSEFKQ 221
++F L+ AC + A + + L P + L+ A + + K+
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 222 VFERLKEQKEFEFDIYG----YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSL 277
V++ + E ++I G Y I +++ GD +L ++ +MK+KG+ PD +++L
Sbjct: 601 VYQMIHE-----YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337
+ V +GH + +D A +I + + G+
Sbjct: 656 VDV-------------------AGH----------------AGDLDKAFEILQDARKQGI 680
Query: 338 IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYT 397
TV Y+SL+ ++ +A +L+E + +R + T N LI L + A
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 398 LFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSL 452
+ ++K+ G + IT+SI+++ R+ + L L+ + + G +LV +
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 339 PDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386
PD V YN+L++G K KV EA +LF +M + G++ + +T++ILIDGL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-12
Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)
Query: 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSIL 177
D T L++ C +G++D A E+ + E +P VY + S +K A+SI
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 178 FKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKE--FEFD 235
+ + + V S LV + + + FE L++ ++ +
Sbjct: 638 DDMKK---KGVKPDEVFFS---------ALVDVAGHAGDLD--KAFEILQDARKQGIKLG 683
Query: 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295
Y+ + A + +L L++++K L P + T N+LI LC ++ AL V
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355
E+K G PN T+ I++ + D + + S+ + +G+ P+ V+ + G+ R
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL-R 801
Query: 356 KVMEACQLFEKMV 368
+ +AC L E +V
Sbjct: 802 RFEKACALGEPVV 814
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 8e-12
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC 282
D+ YN I + G + +L+LF EMK++G+ P+++TY+ LI LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 9e-12
Identities = 57/251 (22%), Positives = 115/251 (45%), Gaps = 43/251 (17%)
Query: 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALI-VWEELKG 299
+C + D+ +LR+ + ++E GL D Y +LI GKV DA+ V+ E+
Sbjct: 446 VCASS----QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMFEVFHEMVN 500
Query: 300 SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV-- 357
+G E N T +I GC ++ ++ A + M+ + PD VV+N+L++ +S V
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560
Query: 358 -------------------------MEAC----------QLFEKMVQDGVRTSCWTHNIL 382
M+AC ++++ + + ++ + + I
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 383 IDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF 442
++ + G + A +++ D+KKKG D + FS +V G +++A ++++ +G
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 443 VVDLVTISSLL 453
+ V+ SSL+
Sbjct: 681 KLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673
TYN+++ + KKG +A + NEM ++ ++ TY+++I GL K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-11
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 304 PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353
P+ T+ +I G CK ++++A+K+F+EM+ G+ P+ Y+ L++G+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 9e-10
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 730 PDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773
PDVVT+NTLI+ K G+++EA M G PN T + L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLM 688
+NSM++ + GY +A + EM + D T++++I+ ++ + A L+
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748
+ G LD+V L+++ K GR ++A +F++M +++++N LI G GR
Sbjct: 353 RTGFP-LDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG 407
Query: 749 KEAHYFLKMMLDSGCTPNHVT 769
+A + M+ G PNHVT
Sbjct: 408 TKAVEMFERMIAEGVAPNHVT 428
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-09
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 45/250 (18%)
Query: 565 SDCHSSQLFSLARG-LR-VQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM-- 620
S C SSQ A LR VQ G+ D + T +S GK++ +FE+F +M
Sbjct: 445 SVCASSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDA---MFEVFHEMVN 500
Query: 621 -GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADL 679
GV +T+ +++ + G +A+G M K D +N +I G+ G D
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560
Query: 680 ASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEA----NML--------------- 719
A +L ++ + D + L+ AG+ D A M+
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 720 ----------------FEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGC 763
++ M+ G+ PD V F+ L++V G AG L +A L+ G
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 764 TPNHVTDTTL 773
V+ ++L
Sbjct: 681 KLGTVSYSSL 690
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDK 686
+ N+++ +V+ G N AW N D+ ++N+++ G G+ +A + ++
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 687 LMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-GINPDVVTFNTLIEVNGKA 745
+++ G D V + +L+ ++G + F M I P++ + ++++ G+A
Sbjct: 580 MVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 746 GRLKEAHYFLKMM 758
G+L EA+ F+ M
Sbjct: 639 GKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 29/373 (7%)
Query: 113 DDVVVDS-ETFKLLLEPCIKSGKIDFA----IEILDYMEELGTSLSPNVYDSVLVSLVRK 167
D + DS E LL E I SGK FA E+ + EE + + +V +RK
Sbjct: 259 DSLDYDSYEYNGLLQEAAISSGKGIFAESKREELYTFYEEKQSRAKSSRLPNV--KGLRK 316
Query: 168 KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLK 227
S+ + LPG + A + + +
Sbjct: 317 GVSSATNSLSLDKKNNGVKDA-------ELPGQSSGQ----AASDVEEENSLAAYNGGVS 365
Query: 228 EQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC-VVGK 286
+++ I YN + G + + L ++M+++GL+ Y++ C
Sbjct: 366 GKRKSPEYIDAYNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA 421
Query: 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346
VK+A + ++ P T +++ C S +D A+++ +Q GL D +Y +
Sbjct: 422 VKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG 406
L++ KS KV ++F +MV GV + T LIDG R G+ A+ + ++ K
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 407 KFVDGITFSIVVLQLCREGQIEEALRLVEEM--EGRGFVVDLVTISSLLIGFHKYGRWDF 464
D + F+ ++ + G ++ A ++ EM E D +T+ +L+ G+ D
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 465 TERLMKHIRDGNL 477
+ + + I + N+
Sbjct: 598 AKEVYQMIHEYNI 610
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-08
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLM 688
Y ++S +KG ++ A + ++M +K D ++ ++ G G D A IL
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD-A 675
Query: 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748
++ G L V Y++L+ A + +A L+E +++ + P V T N LI + +L
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 749 KEAHYFLKMMLDSGCTPNHVTDTTL 773
+A L M G PN +T + L
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732
V YNTLI+ L KAGR +EA LF++M+ GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649
D+D+VN +++++ G + A +F+ ++N+M+S + + G + +
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELF 276
Query: 650 NEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709
M E D+ T VI +G L + ++K G +DV + N+LI +
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLS 335
Query: 710 AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769
G + EA +F +M T D V++ +I K G +A +M +P+ +T
Sbjct: 336 LGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 17/200 (8%)
Query: 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELK 298
Y+ C GD+ + +F M EK V +NS++ + G ++AL ++ E++
Sbjct: 269 YSKC-------GDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 299 GSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVM 358
SG ++FT I+I+ + ++ A + + + G D V +L++ K ++
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 359 EACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVV 418
+A +F++M + + + W N LI G +GR A +F + +G + +TF + V
Sbjct: 378 DARNVFDRMPRKNLIS--W--NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAV 432
Query: 419 LQLCR-EGQIEEALRLVEEM 437
L CR G E+ + + M
Sbjct: 433 LSACRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 86/403 (21%), Positives = 136/403 (33%), Gaps = 110/403 (27%)
Query: 92 RTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTS 151
R +C G LE+ LL SMQE V VD + + L C ++ + S
Sbjct: 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS 118
Query: 152 LSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALR 211
L + +++L VR +L A
Sbjct: 119 LGVRLGNAMLSMFVRFGELVHAW------------------------------------- 141
Query: 212 KSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDL 271
VF ++ E+ D++ +N+ + + G +L L+ M G+ PD+
Sbjct: 142 ---------YVFGKMPER-----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 272 HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331
+T+ VL G + D G E H ++ R +
Sbjct: 188 YTFPC---VLRTCGGIPD----LAR----GRE----VHAHVV-------RFGFEL----- 220
Query: 332 MQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGR 391
D V N+L+ K V+ A +F++M R C + N +I G F NG
Sbjct: 221 --------DVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGE 268
Query: 392 AEAAYTLFCDLKKKGKFVD----GITFSIVVLQLCREGQIEEALRLVEEMEG----RGFV 443
LF + VD IT I +L + RL EM G GF
Sbjct: 269 CLEGLELF--FTMRELSVDPDLMTITSVISACELLGD------ERLGREMHGYVVKTGFA 320
Query: 444 VDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKA 486
VD+ +SL+ + G W E++ + D + W A
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR 423
T+N LIDG + G+ E A LF ++KK+G + T+SI++ LC+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 7e-07
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 412 ITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458
+T++ ++ C++G++EEAL+L EM+ RG ++ T S L+ G K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 7e-07
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 696 DVVMYNTLINVLGKAGRFDEANMLFEQMR 724
DVV YNTLI+ L +AGR DEA L ++M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728
V YN+LI+ KAG+ +EA LF++M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 43/201 (21%)
Query: 589 FDID--MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAW 646
F+ D M+N L + + G L A +LF+ + + ++ +++ V G + +A+
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAF 209
Query: 647 GVLNEMGEKFCPTDIATYNVVIQ---GLG-------------KMGRAD---LASTILDKL 687
+ EM E + T+ V+++ GLG K G ++ ++D
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID-- 267
Query: 688 MKQGGGYLD-------------VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVT 734
M G ++ V +N+++ G +EA L+ +MR SG++ D T
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 735 FNTLIEVNGKAGRL---KEAH 752
F+ +I + + L K+AH
Sbjct: 328 FSIMIRIFSRLALLEHAKQAH 348
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 300 SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333
G +P+ T+ +I G C++ R+D+A+++ EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 61/307 (19%), Positives = 129/307 (42%), Gaps = 28/307 (9%)
Query: 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRR 216
YD+++ + + K + ++ ++S E P N +L+ K
Sbjct: 126 YDALVEACIALKSIRCVKAVY---------WHVESSGFE--PDQYMMNRVLLMHVKCGML 174
Query: 217 SEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276
+ +++F+ + E+ ++ + I G+ + LF+EM E G + T+
Sbjct: 175 IDARRLFDEMPER-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229
Query: 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG 336
+++ +G + + + +G + F +I K ++DA +F M
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---- 285
Query: 337 LIPD--TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEA 394
P+ TV +NS+L G EA L+ +M GV +T +I+I R E
Sbjct: 286 --PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343
Query: 395 AYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454
A L + G +D + + +V + G++E+A + + M + +L++ ++L+
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIA 399
Query: 455 GFHKYGR 461
G+ +GR
Sbjct: 400 GYGNHGR 406
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEA-HYF 754
DVV +N L+ G+ A LF +M SG+NPD VTF +L+ ++G + + YF
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 755 LKMMLDSGCTPN--HVTDTTLDFLGR 778
M TPN H +D LGR
Sbjct: 613 HSMEEKYSITPNLKHYA-CVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 335 NGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368
GL PD V YN+L++G+ ++ +V EA +L ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 54/237 (22%), Positives = 86/237 (36%), Gaps = 18/237 (7%)
Query: 537 AKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVN- 595
A + G Y L D DC L + + G D+D +
Sbjct: 359 AYNGGVSGKRKSPEYIDAYNRLLRDGRIKDC-IDLLEDMEK--------RGLLDMDKIYH 409
Query: 596 -TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654
F + + A + F + +P T+N +MS + A VL + E
Sbjct: 410 AKFFKACKKQRAVKEAFR----FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465
Query: 655 KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFD 714
D Y +I K G+ D + + M G +V + LI+ +AG+
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHE-MVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSG--CTPNHVT 769
+A + MR+ + PD V FN LI G++G + A L M P+H+T
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 9e-06
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 726 SGINPDVVTFNTLIEVNG--KAGRLKEAHYFLKMM 758
G+ PDVVT+NTLI +G +AGR+ EA L M
Sbjct: 1 KGLKPDVVTYNTLI--DGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 81/366 (22%), Positives = 141/366 (38%), Gaps = 69/366 (18%)
Query: 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI--EILDYMEELGTSLS 153
+AG+ +E L + M V D TF +L C G D A E+ ++ G L
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELD 221
Query: 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP--GCVACNELLVALR 211
+V ++++ V+ C D + V + +P C++ N ++
Sbjct: 222 VDVVNALITMYVK-----------------CGDVVSARLVFDRMPRRDCISWNAMISGYF 264
Query: 212 KSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK----EKGL 267
++ E ++F ++E + D+ I A GD RL +EM + G
Sbjct: 265 ENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDE----RLGREMHGYVVKTGF 319
Query: 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKG----------SGHE-------------- 303
D+ NSLIQ+ +G +A V+ ++ SG+E
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 304 -------PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK 356
P+E T ++ C +D +K+ + GLI VV N+L+ K +
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSI 416
+ +A ++F + + V + WT +I GL N R A F + K + +T I
Sbjct: 440 IDKALEVFHNIPEKDVIS--WTS--IIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTL-I 493
Query: 417 VVLQLC 422
L C
Sbjct: 494 AALSAC 499
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 40/106 (37%)
Query: 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689
N+M+S FV+ G AW V +M E+ D+ ++NV++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLV--------------------- 159
Query: 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF 735
GGY KAG FDEA L+ +M +G+ PDV TF
Sbjct: 160 --GGY-------------AKAGYFDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPD 270
YN I G + +L LFKEMKE+G+ PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP 730
+ YN L+ L KAG D A + E+M+ SG+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYF---NQAWGVLNE 651
N+ L+ + G A L+ D GV +T++ M+ F + QA L
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 652 MGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711
G P DI ++ K GR + A + D++ ++ +++ +N LI G G
Sbjct: 354 TG---FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHG 405
Query: 712 RFDEANMLFEQMRTSGINPDVVTF 735
R +A +FE+M G+ P+ VTF
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 18/258 (6%)
Query: 215 RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274
R E ++FE L+ F Y+ + A + ++ ++ G PD +
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334
N ++ + G + DA +++E+ E N + II G + +A +F EM
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 335 NGLIPDTVVYNSLLN-----GMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRN 389
+G + + +L G ++ + + C L +V D SC LID +
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD-TFVSC----ALIDMYSKC 272
Query: 390 GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTI 449
G E A +F + +K + ++ ++ G EEAL L EM G +D T
Sbjct: 273 GDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 450 SSLLIGFHKYGRWDFTER 467
S ++ F + + ++
Sbjct: 329 SIMIRIFSRLALLEHAKQ 346
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQ 314
+L +F + EK ++ ++ S+I L + + +ALI + ++ + +PN T +
Sbjct: 443 ALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 315 GCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT 374
C + + +I + + G+ D + N+LL+ + ++ A F +D
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD---V 554
Query: 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLV 434
W NIL+ G +G+ A LF + + G D +TF ++ R G + + L
Sbjct: 555 VSW--NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 435 EEME 438
ME
Sbjct: 613 HSME 616
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK 638
NT + + KGK+ A KLF G+ P YTY+ ++ K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 56/269 (20%), Positives = 111/269 (41%), Gaps = 16/269 (5%)
Query: 220 KQVFERLKEQKEFEFD-----IYGYNIC--IHAFGCWGDLHTSLRLFKEMKEKG-LVPDL 271
+ + + E K+ D G ++C I G +L LF+ ++
Sbjct: 64 EPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPA 123
Query: 272 HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331
TY++L++ + ++ V+ ++ SG EP+++ ++ K + DA ++F E
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 332 MQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGR 391
M L + +++ G+ + EA LF +M +DG T +++ G
Sbjct: 184 MPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 392 AEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISS 451
A A L C + K G D ++ + G IE+A + + M + V +S
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNS 295
Query: 452 LLIGFHKYGRWDFTERLMKHIRDGNLVLD 480
+L G+ +G + L +RD + +D
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSID 324
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 10/180 (5%)
Query: 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649
D+ + N+ + ++L+ G A K +F+ M ++ +M+S + K G ++A
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEK---VFSRMETKDA-VSWTAMISGYEKNGLPDKALETY 377
Query: 650 NEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709
M + D T V+ +G D+ L +L ++ G VV+ N LI + K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSK 436
Query: 710 AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769
D+A +F + DV+++ ++I R EA F + ML + PN VT
Sbjct: 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 265 KGLVPDLHTYNSLIQVLCVVGKVKDALIVWEE 296
KGL PD+ TYN+LI LC G+V +A+ + +E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 405 KGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438
KG D +T++ ++ LCR G+++EA+ L++EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 342 VVYNSLLNGMFKSRKVMEACQLFEKMVQDGV 372
V YNSL++G K+ K+ EA +LF++M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 732 VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTP 765
+ T+N L+ KAG A L+ M SG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766
VT+NTLI+ KAGR++EA K M + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 412 ITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445
+T++ ++ LC+ G++EEAL L +EM+ RG D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 342 VVYNSLLNGMFKSRKVMEACQLFEKMVQDGVR 373
V YN+L++G+ K+ +V EA +LF++M + G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI 661
TYN+++ K G +A + EM E+ D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 597 FLSIFL-AKGKLNLACKLFEIFTDM---GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEM 652
F S + G K FEI D G+ +Y+S+M + + +A + ++
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 653 -GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711
K PT ++T N +I L + + A +L + MK+ G + + Y+ L+ +
Sbjct: 711 KSIKLRPT-VSTMNALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKD 768
Query: 712 RFDEANMLFEQMRTSGINPDVVTFNTLI 739
D L Q + GI P++V +
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 68/387 (17%), Positives = 142/387 (36%), Gaps = 64/387 (16%)
Query: 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYM 145
+ + + G L + L + M E ++ ++ ++ + +G A + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREM 215
Query: 146 EELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205
E G+ P V ++R GL + + L C VV V+C
Sbjct: 216 WEDGSDAEPRT----FVVMLRASA-GLGSARAGQQLHCC---VLKTGVVGDT--FVSCA- 264
Query: 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265
L+ K + + VF+ + E+ +N + + G +L L+ EM++
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKT-----TVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 266 GLVPDLHTYNSLIQVL-----------------------------------CVVGKVKDA 290
G+ D T++ +I++ G+++DA
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNG 350
V++ + N + +I G R A+++F M G+ P+ V + ++L+
Sbjct: 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 351 MFKSRKVMEACQLFEKMVQD-GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV 409
S + ++F+ M ++ ++ + +I+ L R G + AY + ++ F
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI----RRAPFK 491
Query: 410 DGITFSIVVLQLCREGQIEEALRLVEE 436
+ +L CR + E RL E
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAE 518
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649
D+ N L+ ++A GK ++A +LF + GV+P T+ S++ + + G Q
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 650 NEMGEKFCPT-DIATYNVVIQGLGKMGRADLASTILDKL 687
+ M EK+ T ++ Y V+ LG+ G+ A ++K+
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDT 341
T+ +I G CK+ R+++A+++F EM+ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 620 MGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEM 652
G+ P TYN+++ + G ++A +L+EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGC 763
VT+N+LI KAG+L+EA K M + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGL 267
YN I + G L +L LFKEMKEKG+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337
T+ +I G CK+ ++++A+++F EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 272 HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE 306
TYN+LI LC G+V++AL +++E+K G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 412 ITFSIVVLQLCREGQIEEALRLVEEMEGRGF 442
+T++ ++ C+ G++EEAL L +EM+ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655
TYNS++S + K G +A + EM EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 273 TYNSLIQVLCVVGKVKDALIVWEELKGSG 301
TYNSLI C GK+++AL +++E+K G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALI 292
E D+ +NI + + G ++ LF M E G+ PD T+ SL+ G V L
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 293 VWEELKGSGH-EPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGM 351
+ ++ PN + ++ ++ ++ +A ++M + PD V+ +LLN
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667
Query: 352 FKSRKV 357
R V
Sbjct: 668 RIHRHV 673
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 378 THNILIDGLFRNGRAEAAYTLFCDLKKKG 406
T+N LIDGL + GR E A LF ++K++G
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.97 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.16 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.91 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.71 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.4 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.17 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.15 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.92 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.6 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.4 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.23 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.8 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.69 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.65 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.54 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.77 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.62 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.39 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.98 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.53 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.15 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.93 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.7 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.82 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.41 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.92 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.12 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.58 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.82 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 84.22 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.09 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 83.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.38 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.25 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.5 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.71 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.1 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-73 Score=650.65 Aligned_cols=621 Identities=19% Similarity=0.259 Sum_probs=545.4
Q ss_pred CcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 81 KHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.+++..++.++..+++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.+++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 36778889999999999999999999999999888889999999999999999999999999999888888888889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+|++.|+++.|..+|++| ..||..+||.++.+|++.|++++|.++|++|.. .|+.||..||+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m---------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~ 191 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKM---------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFP 191 (857)
T ss_pred HHHHHhCCChHHHHHHHhcC---------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHH
Confidence 99999999999999999887 567888999999999999999999999999987 78999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.++++|+..+++..+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+++|.+|++.|
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 578889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
++++|+++|.+|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc
Q 003872 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD 480 (790)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (790)
+|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+
T Consensus 348 ~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 348 RMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred hCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 8864 588889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHH
Q 003872 481 VLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLA 560 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (790)
..+++++|..|.+. |.++++..+++.+.. ++...| ..+.
T Consensus 424 ~~~~n~Li~~y~k~---------------g~~~~A~~vf~~m~~--------------------~d~vs~------~~mi 462 (857)
T PLN03077 424 VVVANALIEMYSKC---------------KCIDKALEVFHNIPE--------------------KDVISW------TSII 462 (857)
T ss_pred hHHHHHHHHHHHHc---------------CCHHHHHHHHHhCCC--------------------CCeeeH------HHHH
Confidence 99999999887764 567888888776642 111122 1222
Q ss_pred HhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 003872 561 DQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG 640 (790)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 640 (790)
..............+.+.+.. + ..++..+|+.++.+|++.|.++.+.+++..+.+.|+.++..++++||++|++.|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~---~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL---T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh---C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 222223333333333333321 2 357889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 641 YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLF 720 (790)
Q Consensus 641 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 720 (790)
++++|..+|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.+ +.||..||++++.+|++.|++++|.++|
T Consensus 539 ~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 RMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 999999999987 5799999999999999999999999999999887 9999999999999999999999999999
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Q 003872 721 EQMR-TSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGRE 779 (790)
Q Consensus 721 ~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~ 779 (790)
++|. ..|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|+.|...++.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Confidence 9999 68999999999999999999999999999999994 89999999998776654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-72 Score=638.45 Aligned_cols=589 Identities=19% Similarity=0.255 Sum_probs=508.6
Q ss_pred CchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003872 62 DSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEI 141 (790)
Q Consensus 62 ~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (790)
+...|.++|+.+. .++..+|+.+|.+|++.|++++|+++|+.|...|+.||..||+.++.+|+..+++..+.++
T Consensus 136 ~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 136 ELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred ChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 4556777777662 2577888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHH
Q 003872 142 LDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQ 221 (790)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 221 (790)
+..+.+.|+.++..+++.|+.+|++.|+++.|..+|++| ..+|..+||.++.+|++.|++++|.+
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m---------------~~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM---------------PRRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC---------------CCCCcchhHHHHHHHHhCCCHHHHHH
Confidence 888888888888888888888888888888888888876 56778888888888888888888888
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003872 222 VFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG 301 (790)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 301 (790)
+|.+|.+ .|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 275 LFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 8888887 788888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
|+.+|++.|++++|.++|++|.+. |..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 888888888888888888888653 777888888888888888888888888875 588888888888888888888
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
.+.+.+++..+.+.|+.+|..+++++|..|.+. |.++++...+...
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~---------------G~~~~A~~~f~~~------------------- 550 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC---------------GRMNYAWNQFNSH------------------- 550 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHc---------------CCHHHHHHHHHhc-------------------
Confidence 888888888888888888888888888887664 4555665554332
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
.++..+|+++|.+|++.|+.++|.++|++|.+.|
T Consensus 551 ----------------------------------------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 551 ----------------------------------------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred ----------------------------------------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3477889999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 622 VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMY 700 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 700 (790)
+.||..||++++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~----~~pd~~~~ 660 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP----ITPDPAVW 660 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC----CCCCHHHH
Confidence 99999999999999999999999999999998 67999999999999999999999999999999872 78999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 701 NTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 701 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
++|+.+|...|+.+.+....+++.+. .|+ ...|..|.+.|...|+|++|.++.+.|++.|+.+++
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999998888874 554 667778889999999999999999999999998865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-69 Score=597.71 Aligned_cols=524 Identities=17% Similarity=0.256 Sum_probs=462.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGT-SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
.++...|..++..|++.|++++|.++|++|.+.|+ +++...+..++.+|.+.|.+++|..+|+.|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-------------- 432 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-------------- 432 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--------------
Confidence 45677888888888889999999999999988875 456667788888888889999998888776
Q ss_pred ccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH
Q 003872 195 ESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274 (790)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 274 (790)
..|+..+|+.++.+|++.|++++|.++|+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 433 -~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 433 -RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 458888999999999999999999999999988 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHH
Q 003872 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY--NGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~ 352 (790)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999889999999999999999999999999999999975 578899999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003872 353 KSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALR 432 (790)
Q Consensus 353 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 432 (790)
+.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCCh
Q 003872 433 LVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDL 512 (790)
Q Consensus 433 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 512 (790)
++++|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.++.||..+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt----------------------------- 721 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST----------------------------- 721 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-----------------------------
Confidence 999999999999999999999999999999999999999888776665544
Q ss_pred HHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHH
Q 003872 513 SEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDID 592 (790)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (790)
T Consensus 722 -------------------------------------------------------------------------------- 721 (1060)
T PLN03218 722 -------------------------------------------------------------------------------- 721 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.
T Consensus 722 -yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 722 -MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5567777788888999999999998889999999999999999999999999999999999999999999998887643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 673 K----M-------------------GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 673 ~----~-------------------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
+ . +..+.|..+|++|.+.| +.||..||+.++.++++.+..+.+..+++.|...+..
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G-i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG-TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 2 1 22467999999999998 9999999999999888999999999999999988899
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 730 PDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 730 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
|+..+|++|+++|.+. .++|+.++++|.+.|+.|+..
T Consensus 880 ~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 880 QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999998543 478999999999999999987
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=588.27 Aligned_cols=536 Identities=16% Similarity=0.239 Sum_probs=498.0
Q ss_pred hhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 65 KKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDV-VVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 65 ~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
.++...++... ..++...|..++..+++.|++++|+++|+.|.+.++ .++..++..++..|.+.|.+++|..+|+
T Consensus 355 ~~~~~~~~~~~----~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 355 NSLAAYNGGVS----GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred hhHHHhccccC----CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555422 235677889999999999999999999999999986 4677888899999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHH
Q 003872 144 YMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVF 223 (790)
Q Consensus 144 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (790)
.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.+ ..||..+|+.||.+|++.|++++|.++|
T Consensus 431 ~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----------l~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 431 LIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----------LKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 8874 899999999999999999999999999999876 7899999999999999999999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC
Q 003872 224 ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG--SG 301 (790)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g 301 (790)
+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|
T Consensus 496 ~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 496 HEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
+++|.++|++|.+.|+.||..+|
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty--------------------------------------------------------- 757 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITY--------------------------------------------------------- 757 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH---------------------------------------------------------
Confidence 99999999999998888876654
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
++++.+|++.|++++|.++|+.|.+.|
T Consensus 758 -----------------------------------------------------~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 758 -----------------------------------------------------SILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred -----------------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 566677888999999999999999999
Q ss_pred CCCChhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 622 VHPVNYTYNSMMSSFVK----K-------------------GYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
+.||..+|++|+..|.+ . +..+.|..+|++|.+.|+.||..||+.++.+++..+..+
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 99999999999876432 1 234679999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
.+..+++.|...+ ..|+..+|+++|+++++. .++|..+|++|...|+.|+..
T Consensus 865 ~~~~m~~~m~~~~-~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 LRNRLIENLGISA-DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHhccCC-CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999887766 889999999999998543 468999999999999999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-62 Score=541.74 Aligned_cols=513 Identities=15% Similarity=0.224 Sum_probs=432.1
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDD-VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.+...|+.+|..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.|+..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+|++.|+++.|.++|++| ..||..+||.++.+|++.|++++|.++|++|.+ .|+.|+..+|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m---------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~ 228 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM---------------PERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFV 228 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC---------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHH
Confidence 99999999999999999887 557888888888888888888888888888887 78888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.+|.+|++.|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888888886 567888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+.+|++.|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc
Q 003872 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD 480 (790)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (790)
+|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+
T Consensus 385 ~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~------ 454 (697)
T PLN03081 385 RMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE------ 454 (697)
T ss_pred hCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------
Confidence 8754 477888888888888888888888888888888888888888888887777766666666655543
Q ss_pred hHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHH
Q 003872 481 VLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLA 560 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (790)
T Consensus 455 -------------------------------------------------------------------------------- 454 (697)
T PLN03081 455 -------------------------------------------------------------------------------- 454 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 003872 561 DQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG 640 (790)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 640 (790)
+.|+.|+..+|+.++++|++.|
T Consensus 455 ----------------------------------------------------------~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 455 ----------------------------------------------------------NHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred ----------------------------------------------------------hcCCCCCccchHhHHHHHHhcC
Confidence 2467899999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 641 YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANML 719 (790)
Q Consensus 641 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 719 (790)
++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|+.|+++|++.|++++|.++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 999999998876 46799999999999999999999999999988754 44 467899999999999999999999
Q ss_pred HHHHHhcCCCCC-hHHHHHHHH---HHh----c----cCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 720 FEQMRTSGINPD-VVTFNTLIE---VNG----K----AGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 720 ~~~m~~~g~~p~-~~~~~~l~~---~~~----~----~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++.|.+.|+... ..+|..+.. .+. . ..-++...++..+|.+.|+.||..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999988643 223321110 000 0 011456678888999999999854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=522.06 Aligned_cols=477 Identities=19% Similarity=0.258 Sum_probs=450.7
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
...+...|+.++..|.+.|++++|.++|+.|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999856688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 276 SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999965 489999999999999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHH
Q 003872 436 EMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEI 515 (790)
Q Consensus 436 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (790)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++++.+|++. |.+++|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~---------------G~~~~A 379 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW---------------GRMEDA 379 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC---------------CCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998774 567788
Q ss_pred HHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHH
Q 003872 516 MSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVN 595 (790)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (790)
..+++.+. .++..+||
T Consensus 380 ~~vf~~m~----------------------------------------------------------------~~d~~t~n 395 (697)
T PLN03081 380 RNVFDRMP----------------------------------------------------------------RKNLISWN 395 (697)
T ss_pred HHHHHhCC----------------------------------------------------------------CCCeeeHH
Confidence 87776553 23667899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhc
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE-KFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~ 674 (790)
++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999986 59999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+++|++.|++++|.+
T Consensus 476 G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 476 GLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred CCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 9999999998765 3789999999999999999999999999999975 4564 6799999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 003872 754 FLKMMLDSGCTP 765 (790)
Q Consensus 754 ~~~~m~~~~~~p 765 (790)
++++|.+.|+.+
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=320.01 Aligned_cols=599 Identities=12% Similarity=0.014 Sum_probs=372.6
Q ss_pred HHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 003872 54 QVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG 133 (790)
Q Consensus 54 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (790)
..+.....++..|+..|..+.+..|. ....+..+...+...|++++|...++.+.... +.+...+..+...+.+.|
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPE---YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 33333455677788888777655543 22334445556677788888888887777654 335566677777777888
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
++++|.+.++.+.... +.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...+...
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL------------DPENAAARTQLGISKLSQ 410 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhC
Confidence 8888888887777654 345667777777788888888888888777664 233445666677777777
Q ss_pred cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIV 293 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 293 (790)
|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.
T Consensus 411 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777776521 1223445556667777777777777777776542 33566777777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003872 294 WEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVR 373 (790)
Q Consensus 294 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~ 373 (790)
|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++...+ +
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 77776653 4445566667777777777777777777777653 2355667777777777777777777777776654 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003872 374 TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLL 453 (790)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 453 (790)
.+...+..+...+...|++++|..+++.+.... +.+...|..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 455566677777777777777777777776653 2356667777777777777777777777776653 22556677777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCC
Q 003872 454 IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533 (790)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (790)
.++...|++++|...++++.+.. +.+...+..+...+.. .+..+++..++......
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------------~~~~~~A~~~~~~~~~~-------- 698 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA---------------AKRTESAKKIAKSLQKQ-------- 698 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHhh--------
Confidence 77777777777777777776643 2223444444444433 34455565555433210
Q ss_pred CCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q 003872 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKL 613 (790)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 613 (790)
.+.++..+..+...+...|++++|...
T Consensus 699 -----------------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 699 -----------------------------------------------------HPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred -----------------------------------------------------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 112333444455555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003872 614 FEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG 693 (790)
Q Consensus 614 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 693 (790)
|+.+.+.+ |+..++..+..++.+.|++++|...++++.+. .+.+...++.+...|...|++++|.++|+++.+..
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 800 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-- 800 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--
Confidence 55555442 33344445555555555555555555555554 23345555555555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 694 YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+.+...++.+...+...|+ .+|+.+++++.... +-+..++..+..++.+.|++++|.++++++.+.
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555555555 55555555555431 112344455555555555555555555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=310.35 Aligned_cols=590 Identities=13% Similarity=0.046 Sum_probs=348.0
Q ss_pred CCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003872 61 LDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE 140 (790)
Q Consensus 61 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (790)
.+...|+..|..+.+..| .+...+..+...+.+.|++++|...++.+...+ +.+...+..+...+.+.|++++|.+
T Consensus 309 g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAP---NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred CCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345556666665544433 344555556666666666666666666666554 2355566666666666666666666
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHH
Q 003872 141 ILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFK 220 (790)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 220 (790)
+|+++.+.. +.+...+..+...+...|++++|...+.++.+. .+........++..+.+.|++++|.
T Consensus 385 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 385 YLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL------------DPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh------------CCcchhhHHHHHHHHHhcCCHHHHH
Confidence 666666543 234455666666666666666666666666553 1222334445556666666666666
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003872 221 QVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
.+++.+.. ..+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 452 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 452 AAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666654 2344555666666666666666666666666665432 23445555666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003872 301 GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHN 380 (790)
Q Consensus 301 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 380 (790)
+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.... +.+...|.
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3 3455566666666666666666666666665543 2244555566666666666666666666666543 34555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003872 381 ILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYG 460 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 460 (790)
.+...+...|++++|...++.+.+... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 666666666666666666666665432 244556666666666666666666666666542 224556666666666666
Q ss_pred CchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCccc
Q 003872 461 RWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDE 540 (790)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (790)
++++|..+++.+.+... .+...+..+...+.. .+..+++...+.....
T Consensus 684 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~g~~~~A~~~~~~~~~---------------- 731 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHP-KAALGFELEGDLYLR---------------QKDYPAAIQAYRKALK---------------- 731 (899)
T ss_pred CHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHh----------------
Confidence 66666666666665432 222222222222221 2334444443322210
Q ss_pred ccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003872 541 GSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM 620 (790)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 620 (790)
. .++...+..++..+.+.|++++|...++.+.+.
T Consensus 732 ---------------------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 732 ---------------------------------------------R-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred ---------------------------------------------h-CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 011144555666666666666666666666655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 621 GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMY 700 (790)
Q Consensus 621 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 700 (790)
. +.+...+..+...|...|++++|..+|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +-+..++
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~ 840 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAIL 840 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHH
Confidence 4 4455666666666666666666666666666653 3456666666666666666 55666666666542 2344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 701 NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 701 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+..++...|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.+++++|+
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666666666664332 56666666666666666666666666664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-23 Score=242.19 Aligned_cols=610 Identities=13% Similarity=0.067 Sum_probs=400.8
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH----------------HH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET----------------FK 123 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~----------------~~ 123 (790)
..+++.|...+..+....| .++..+..++..+.+.|+.++|.+.++...+..+ .+... ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~p---~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDP---NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred hCChHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhHH
Confidence 4577888888888877776 4678888899999999999999999999988753 23332 23
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
.+...+.+.|++++|++.|+++...+. ++.. ....+.......|+.++|+..|+++++. .+.+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~------------~P~~~~~ 183 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD------------YPGNTGL 183 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh------------CCCCHHH
Confidence 344567888999999999999887543 3332 1222222233458899999999998886 4445667
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCC-----------------CCc-hhhHH------------------------
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEF-----------------EFD-IYGYN------------------------ 240 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~-~~~~~------------------------ 240 (790)
+..+...+...|++++|+..++++...... .+. ...+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 778888888999999999999887542110 000 00011
Q ss_pred ----------HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 003872 241 ----------ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-NEFTH 309 (790)
Q Consensus 241 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~ 309 (790)
.....+...|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+..... ....|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 112334556777777777777766532 255666667777777777777777777766542111 11111
Q ss_pred H------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 310 R------------IIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 310 ~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
. .....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 1 11234556677777777777776653 2244555566667777777777777777776643 22344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKF--------VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTI 449 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 449 (790)
.+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..+++.++.... +...+
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLT 498 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 4555555553 34567776666554322100 01122444556677889999999999998876433 66777
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..+...|.+.|++++|...++++.+.........+...+ + +...+...+++..+.....
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al--~--------------l~~~~~~~~Al~~l~~l~~----- 557 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL--Y--------------LSGSDRDRAALAHLNTLPR----- 557 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH--H--------------HHhCCCHHHHHHHHHhCCc-----
Confidence 888888999999999999999987643221111121111 1 1123344555554433221
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNL 609 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 609 (790)
..|.. -+..+...+ ....+..+...+...|+.++
T Consensus 558 ------------------~~~~~--~~~~l~~~l--------------------------~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 558 ------------------AQWNS--NIQELAQRL--------------------------QSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred ------------------hhcCh--hHHHHHHHH--------------------------hhhHHHHHHHHHHHCCCHHH
Confidence 00110 001111000 11123356777889999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999872 25666778889999999999999999999999873 44788899999999999999999999998876
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---ChHHHHHHHHHHhccCCHHHHHHHHHHHH-hCCC
Q 003872 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI--NP---DVVTFNTLIEVNGKAGRLKEAHYFLKMML-DSGC 763 (790)
Q Consensus 690 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 763 (790)
.. +.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..+++.. ..|+
T Consensus 666 ~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 666 TA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 53 33556677788889999999999999999987422 22 23466677888999999999999999986 3455
Q ss_pred CCC
Q 003872 764 TPN 766 (790)
Q Consensus 764 ~p~ 766 (790)
.|.
T Consensus 744 ~~~ 746 (1157)
T PRK11447 744 TPT 746 (1157)
T ss_pred CCC
Confidence 543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-21 Score=228.37 Aligned_cols=610 Identities=12% Similarity=0.020 Sum_probs=357.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHH---------
Q 003872 87 YSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVY--------- 157 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 157 (790)
.-..++.....++.+.|.+.+..+..... -++.++..++..+.+.|+.++|.+.++++.+..+ .++...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence 44566777888999999999999988763 4788999999999999999999999999998763 233322
Q ss_pred -------HHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHH-HHHHHhccchHHHHHHHHHHHhc
Q 003872 158 -------DSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNEL-LVALRKSDRRSEFKQVFERLKEQ 229 (790)
Q Consensus 158 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 229 (790)
..+...+...|++++|...|+++++. .+++...-..+ .......|+.++|++.++.+.+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~------------~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNG------------APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC------------CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 33345688899999999999998764 23332211111 12223469999999999999974
Q ss_pred CCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC----------------CHh---HHHHHHHHHHhcCCHHHH
Q 003872 230 KEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP----------------DLH---TYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 230 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a 290 (790)
.+-+...+..+...+...|+.++|+..++++.+..... +.. .+...+..+-.......|
T Consensus 177 --~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 177 --YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred --CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 34466778889999999999999999999986542110 000 011111111111223344
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
...+.........|.... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.
T Consensus 255 ~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444433221222211 123345566777777777777776643 225566677777777777777777777777664
Q ss_pred CCCC-CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 371 GVRT-SCWTH------------NILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 371 ~~~~-~~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
.... ....+ ......+.+.|++++|+..|+++...... +...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3111 11111 11233455677777777777777766332 4555666677777777777777777777
Q ss_pred HhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHH-HHHHhhccccccccCCCCCCCCCChHHHH
Q 003872 438 EGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKAD-VEATMKSRKSKRKDYTPMFPYKGDLSEIM 516 (790)
Q Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (790)
.+.... +...+..+...|. .++.++|...++.+..............+ ...+.. ....+...+..+++.
T Consensus 412 L~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--------~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 412 LRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ--------QAEALENQGKWAQAA 481 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH--------HHHHHHHCCCHHHHH
Confidence 765322 4445555555553 34566666666544321100000000000 000000 000112234444444
Q ss_pred HhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHH
Q 003872 517 SLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNT 596 (790)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (790)
..+.+..... ....| ..-.+.................+. .. ...+.++..+..
T Consensus 482 ~~~~~Al~~~-------------------P~~~~----~~~~LA~~~~~~G~~~~A~~~l~~--al--~~~P~~~~~~~a 534 (1157)
T PRK11447 482 ELQRQRLALD-------------------PGSVW----LTYRLAQDLRQAGQRSQADALMRR--LA--QQKPNDPEQVYA 534 (1157)
T ss_pred HHHHHHHHhC-------------------CCCHH----HHHHHHHHHHHcCCHHHHHHHHHH--HH--HcCCCCHHHHHH
Confidence 4443332100 00000 000000000000000000000000 00 011223333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChh---------hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNY---------TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 4444445555555555555543221111111 112234456667777777777661 34566677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
...+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.++...+. .| +..++..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC
Confidence 899999999999999999999874 456788999999999999999999999988764 34 4566778888999999
Q ss_pred CHHHHHHHHHHHHhC
Q 003872 747 RLKEAHYFLKMMLDS 761 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~ 761 (790)
++++|.++++++...
T Consensus 686 ~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999999864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-19 Score=188.03 Aligned_cols=572 Identities=13% Similarity=0.045 Sum_probs=400.1
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEIL 142 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (790)
.+.|..-|.++.+..| ++...+-.-..+....|++..|+.+|..+...+....+.....+...+++.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 4678888988877666 5555555555666678999999999999877654333334444557778999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHH
Q 003872 143 DYMEELGTSLSPNVYDSVLVSLVRK---KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEF 219 (790)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 219 (790)
.+..+.++ .+..++..|.-.-... ..+..+.+.+...... ...++...+.|.+.|.-.|++..+
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~------------n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE------------NNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh------------cCCCcHHHHHHHHHHhhcccHHHH
Confidence 99998653 2333443333333333 3355666666666554 566788999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHH
Q 003872 220 KQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQVLCVVGKVKDALIVWEE 296 (790)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 296 (790)
+.+...+....-..+ -...|-.+.++|...|++++|...|.+..+. .++.++ +--+...+.+.|+++.+...|+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 999998876321111 2356788999999999999999999998876 444433 44567899999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 003872 297 LKGSGHEPNEFTHRIIIQGCCKSY----RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV---- 368 (790)
Q Consensus 297 ~~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~---- 368 (790)
+.+.. +-+..+...+...|...+ ..+.|..++....+.- +.|...|-.+...+... +...++..|....
T Consensus 368 v~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 368 VLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILE 444 (1018)
T ss_pred HHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 98773 444566666666666654 4567777777766653 34666777766665544 4444466655443
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK---GKFVDG------ITFSIVVLQLCREGQIEEALRLVEEMEG 439 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 439 (790)
..+-.+-....|.+...+...|++..|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444566778899999999999999999999887665 122233 2233345555667789999999999887
Q ss_pred CCCccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHh
Q 003872 440 RGFVVD-LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSL 518 (790)
Q Consensus 440 ~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (790)
.. |+ ...|.-+.......++..+|...++.+.+.
T Consensus 525 eh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~------------------------------------------- 559 (1018)
T KOG2002|consen 525 EH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI------------------------------------------- 559 (1018)
T ss_pred HC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------------------------------------------
Confidence 62 22 222333332223345666666666665542
Q ss_pred hcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHH
Q 003872 519 IGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFL 598 (790)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 598 (790)
+..++.++.-+.
T Consensus 560 --------------------------------------------------------------------d~~np~arsl~G 571 (1018)
T KOG2002|consen 560 --------------------------------------------------------------------DSSNPNARSLLG 571 (1018)
T ss_pred --------------------------------------------------------------------ccCCcHHHHHHH
Confidence 233556666666
Q ss_pred HHHHHcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDM-GVHPVNYTYNSMMSSFVK------------KGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
..+.+...+..|.+-|..+.+. ...+|+.+.-+|.+.|.. .+..++|+++|.+.++.. +-|...-|
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAAN 650 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAAN 650 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhcc
Confidence 6777777777777766555332 223566666666665543 345778999999988874 34777778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-GINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 744 (790)
.+.-.++..|++..|..+|.+..+.. .-+..+|-.+.++|...|++..|+++|+..... +-.-+..+...|..++.+
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 88888999999999999999988874 335567888999999999999999999987763 344567888999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccc--hhHH
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHVT--DTTL 773 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~t--~~~l 773 (790)
+|.+.+|.+.+...... .|...+ |++.
T Consensus 729 ~~~~~eak~~ll~a~~~--~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHL--APSNTSVKFNLA 757 (1018)
T ss_pred hhhHHHHHHHHHHHHHh--CCccchHHhHHH
Confidence 99999999998888754 444433 5543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-18 Score=194.30 Aligned_cols=589 Identities=12% Similarity=0.030 Sum_probs=386.8
Q ss_pred HHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 003872 51 LVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCI 130 (790)
Q Consensus 51 ~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 130 (790)
+....+....+++..|+..|+.+.+..| .++.++..+.+.+...|++++|+..++...+.+. -|...+..+ ..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVP---DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh-
Confidence 4445555556889999999999988888 4578889999999999999999999999998863 244444443 222
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS--------LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
+++.+|.++|+++.+... -+..++..+... |.+.+...++++ .+... ..|...+
T Consensus 122 --~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~-------------~~~~~~v 183 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA-------------ASPEGKT 183 (987)
T ss_pred --ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC-------------CCCCcHH
Confidence 999999999999999753 356666666665 666655555544 11110 2223444
Q ss_pred HHHH-HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 203 CNEL-LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGC-WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 203 ~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
.... ...|.+.+++++|++.+..+.+.. +.+......|..+|.. .++ +.+..+++. .+.-+......+...
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~ 256 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHH
Confidence 4444 899999999999999999999842 3345556677778877 366 888887553 233588899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH------------------------------HHHHHhcCCHHHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGH-EPNEFTHRII------------------------------IQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l------------------------------i~~~~~~~~~~~a~~~~ 329 (790)
|.+.|+.++|.++++++...-. .|...+|--. +..+.+.++++.+.++.
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999998764421 1333322222 33444555555444331
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 003872 330 SEMQYNGLIPDTVVYNSLLNGM--FKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-- 405 (790)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 405 (790)
.+.|..... .++.. ...+...++...++.|.+.. +-+......+.-...+.|+.++|..+++.....
T Consensus 337 ------~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~ 407 (987)
T PRK09782 337 ------ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG 407 (987)
T ss_pred ------cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc
Confidence 123333322 22222 23356666666666666642 224555555555667778888888888777663
Q ss_pred CCCCCHhhHHHHHHHHHHcCC---HHHH----------------------HHHHHHHHhC-CC-cc--CHHHHHHHHHHH
Q 003872 406 GKFVDGITFSIVVLQLCREGQ---IEEA----------------------LRLVEEMEGR-GF-VV--DLVTISSLLIGF 456 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~---~~~a----------------------~~~~~~m~~~-~~-~~--~~~~~~~l~~~~ 456 (790)
...++......++..|.+.+. ...+ ...++..... +. ++ +...|..+..++
T Consensus 408 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l 487 (987)
T PRK09782 408 DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCY 487 (987)
T ss_pred ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 122333344455555555443 2222 2222222221 11 23 566677777666
Q ss_pred HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCC
Q 003872 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGD 536 (790)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (790)
.. ++.++|...+.+..... |+... .+..++. +...+.++++...+++...
T Consensus 488 ~~-~~~~eAi~a~~~Al~~~--Pd~~~--~L~lA~a-------------l~~~Gr~eeAi~~~rka~~------------ 537 (987)
T PRK09782 488 RD-TLPGVALYAWLQAEQRQ--PDAWQ--HRAVAYQ-------------AYQVEDYATALAAWQKISL------------ 537 (987)
T ss_pred Hh-CCcHHHHHHHHHHHHhC--CchHH--HHHHHHH-------------HHHCCCHHHHHHHHHHHhc------------
Confidence 65 77777888777766543 34322 1111111 0112334444333322110
Q ss_pred CcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003872 537 AKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEI 616 (790)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 616 (790)
.++....+..+...+.+.|++++|...++.
T Consensus 538 --------------------------------------------------~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 538 --------------------------------------------------HDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred --------------------------------------------------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011223345667788889999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...++++.... +.+
T Consensus 568 AL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~ 642 (987)
T PRK09782 568 AEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNN 642 (987)
T ss_pred HHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 88765 333333444444455569999999999999885 4577888888999999999999999999998874 446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
...++.+..++...|++++|+..|++..+. .| +...+..+..++...|++++|+..+++..+. .|+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a 711 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQA 711 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCc
Confidence 677888888899999999999999999874 34 4778889999999999999999999999854 56553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-17 Score=181.95 Aligned_cols=549 Identities=10% Similarity=-0.050 Sum_probs=369.9
Q ss_pred HhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003872 95 CRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAM 174 (790)
Q Consensus 95 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 174 (790)
...|++++|+..|+...+..+. +..++..+...|...|++++|+..+++..+.. |+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3459999999999999998744 68889999999999999999999999999875 4444444433323 8999999
Q ss_pred HHHHHHHHHhccCCCCCcccccCCCcchHHHHHHH--------HHhccchHHHHHHHHHHHhcCCCCCchhhHHHH-HHH
Q 003872 175 SILFKLLEACNDNTADNSVVESLPGCVACNELLVA--------LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC-IHA 245 (790)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~ 245 (790)
.+++++++. .+.+..++..+... |.+. ++|.+.++ ... ....|+..+.... ...
T Consensus 129 ~~ye~l~~~------------~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 129 TTVEELLAQ------------QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQR 191 (987)
T ss_pred HHHHHHHHh------------CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHH
Confidence 999999986 44455666666655 6665 44444444 222 2233344444444 899
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV-VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
|.+.|++++|+.++.++.+.+.. +..-...+..+|.. .++ +.+..+++. .++.+...+..+...|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998644 45556667778887 366 778777553 234678899999999999999999
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003872 325 AMKIFSEMQYNGLI-PDTVVYNSL------------------------------LNGMFKSRKVMEACQLFEKMVQDGVR 373 (790)
Q Consensus 325 a~~~~~~m~~~~~~-p~~~~~~~l------------------------------i~~~~~~~~~~~a~~l~~~~~~~~~~ 373 (790)
|.+++.++...-.. |...++..+ +..+.+.++++.++++.. +.
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 99999987533211 333332221 344455555554444421 34
Q ss_pred CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CccCHHHH
Q 003872 374 TSCWTHNILIDGL--FRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGR-G-FVVDLVTI 449 (790)
Q Consensus 374 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~~~~~~~~ 449 (790)
|.... ..++.. ...+...++...+..|.+.... +......+.-...+.|+.++|..+++..... + -.++....
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44443 233332 2346777888888888776322 4444444555567899999999999998773 2 23345555
Q ss_pred HHHHHHHHhcCC-------------------------chHHHHHHHHHHhC-CCccc---hHhHHHHHHHHhhccccccc
Q 003872 450 SSLLIGFHKYGR-------------------------WDFTERLMKHIRDG-NLVLD---VLKWKADVEATMKSRKSKRK 500 (790)
Q Consensus 450 ~~l~~~~~~~g~-------------------------~~~a~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~~~~~~~ 500 (790)
.-++..|.+.+. ..++...+...... ...|+ ...|..+-..+..
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~------- 489 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD------- 489 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------
Confidence 577777776654 22222223333221 11122 2222222211111
Q ss_pred cCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHh
Q 003872 501 DYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLR 580 (790)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 580 (790)
+...+++..+.+.. .
T Consensus 490 ---------~~~~eAi~a~~~Al--------------------------------------------------------~ 504 (987)
T PRK09782 490 ---------TLPGVALYAWLQAE--------------------------------------------------------Q 504 (987)
T ss_pred ---------CCcHHHHHHHHHHH--------------------------------------------------------H
Confidence 11222222111110 0
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 003872 581 VQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD 660 (790)
Q Consensus 581 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 660 (790)
.. + +......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 505 ~~-----P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 505 RQ-----P-DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred hC-----C-chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 00 1 1112334455557899999999999998654 4555667777888999999999999999998864 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLI 739 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~ 739 (790)
...+..+...+...|++++|...+++.++. .|+...|..+..++.+.|++++|...|++.... .| +...++.+.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 334444444555669999999999999985 467889999999999999999999999999985 44 467788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 740 EVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++...|++++|+..+++..+. .|+...
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~ 678 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPA 678 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 9999999999999999999864 666544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-17 Score=171.39 Aligned_cols=587 Identities=13% Similarity=0.053 Sum_probs=380.3
Q ss_pred hcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHH---hcC
Q 003872 57 GKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCI---KSG 133 (790)
Q Consensus 57 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~---~~~ 133 (790)
.-...+...|+.+|+.+....|.+++++.. .+-..+.+.++.+.|+..|..+.+.++ -++.++..|...-. ...
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchH
Confidence 345678899999999998889998888865 344677889999999999999998864 34444444333322 234
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
.+..+.+++...-..+ +-+|.+.+.|...|.-.|+++.+..+...++..... ..--...|..+.++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---------~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN---------KSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHHHhh
Confidence 5667777777776654 358889999999999999999999999988775310 112245688899999999
Q ss_pred cchHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC----CH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG----KV 287 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~ 287 (790)
|++++|...|.+..+ ..++ +..+--+...|.+.|+++.+...|+...+.. +-+..+...|...|...+ ..
T Consensus 321 Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred ccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHH
Confidence 999999999988875 2334 3445567889999999999999999998873 225667777777777764 46
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 288 KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE----MQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 288 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
+.|..++.+..+.- +.|...|-.+...+-...- ..++..|.. +...+-.+.....|.+.......|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 78888888877664 6677788777777765444 334666654 34556567888899999999999999999999
Q ss_pred HHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 003872 364 FEKMVQD---GVR------TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLV 434 (790)
Q Consensus 364 ~~~~~~~---~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (790)
|+..... ... ++..+-..+...+-..++.+.|.+.|..+.+..+. -...|-.+.......+...+|...+
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHH
Confidence 9988764 111 22223334555566678999999999999887322 2333444443444567888999999
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCc-cchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLV-LDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
.+.... ...++..++.+...+.+...+..|..-|..+.+.-.. +|.++.-++=..++....
T Consensus 554 k~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~----------------- 615 (1018)
T KOG2002|consen 554 KDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH----------------- 615 (1018)
T ss_pred HHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc-----------------
Confidence 998875 3346667777777888888887777766655543211 232221111110000000
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
.|+. ++
T Consensus 616 -----------------------------------~~~r-------------------------------------n~-- 621 (1018)
T KOG2002|consen 616 -----------------------------------NPSR-------------------------------------NP-- 621 (1018)
T ss_pred -----------------------------------cccc-------------------------------------Ch--
Confidence 0000 00
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
-...+..++|+++|...+... +-|...-|-+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..
T Consensus 622 -------ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 622 -------EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred -------HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 011234455666666555543 34444445555555566666666666666655432 133455555666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH------------
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEV------------ 741 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~------------ 741 (790)
.|++..|+++|+...+...-.-+......|..++..+|.+.+|.+.+.........-..+.||..+-.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 66666666666666555433345555556666666666666666665555543222223333332211
Q ss_pred ------HhccCCHHHHHHHHHHHHhCCCC
Q 003872 742 ------NGKAGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 742 ------~~~~g~~~~A~~~~~~m~~~~~~ 764 (790)
....+..++|.++|..|...+-.
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12223467888899888866544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=172.48 Aligned_cols=437 Identities=14% Similarity=0.040 Sum_probs=303.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC 282 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 282 (790)
...|.....+.|++.+|++.....-.+. +.+....-.+-..+.+..+.+....--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666677788888877766554321 1122223333344555555555544333333332 235677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 003872 283 VVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS-LLNGMFKSRKVMEAC 361 (790)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~ 361 (790)
..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..-..+ +-...-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 8888888888888887763 334667777888888888888888888777764 455443322 233334467778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRG 441 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 441 (790)
..|.+..+.. +--...|+.|...+-.+|+...|+..|++..+.... =...|-.|-..|...+.++.|...+.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 7777776643 123456777777777888888888888887776322 23457777777888888888888887776542
Q ss_pred CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcC
Q 003872 442 FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGS 521 (790)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (790)
.. ....+..+...|...|.+|.|...+++..+.
T Consensus 283 pn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------------------------------------------- 315 (966)
T KOG4626|consen 283 PN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------------------------------------------- 315 (966)
T ss_pred Cc-chhhccceEEEEeccccHHHHHHHHHHHHhc----------------------------------------------
Confidence 22 4566667777777888888888888877652
Q ss_pred CccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHH
Q 003872 522 TNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIF 601 (790)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 601 (790)
.|.-+++|+.+..++
T Consensus 316 -----------------------------------------------------------------~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 316 -----------------------------------------------------------------QPNFPDAYNNLANAL 330 (966)
T ss_pred -----------------------------------------------------------------CCCchHHHhHHHHHH
Confidence 233466788888888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 681 (790)
-..|++.+|...++...... +......+-|...|...|.+++|..+|....+.. +--...+|.|...|-++|++++|+
T Consensus 331 kd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHH
Confidence 88888888888888887764 4456677778888888888888888888877752 223456777888888888888888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 682 TILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+++.++ ++|+ ...|+.+...|-..|+.+.|.+.+.+... +.|. ...++.|...|-.+|+..+|+.-++..+
T Consensus 409 ~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 409 MCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 88888776 4565 45777888888888888888888888876 4566 5677888888888888888888888887
Q ss_pred hCCCCCCcc
Q 003872 760 DSGCTPNHV 768 (790)
Q Consensus 760 ~~~~~p~~~ 768 (790)
+ +.||-.
T Consensus 484 k--lkPDfp 490 (966)
T KOG4626|consen 484 K--LKPDFP 490 (966)
T ss_pred c--cCCCCc
Confidence 4 466543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=170.65 Aligned_cols=471 Identities=12% Similarity=0.048 Sum_probs=342.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
...|..-..+.|++..|++....+.... +.+....-.+-..+.+..+.+....--.... ...+.-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d------------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~--r~~~q~a 116 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED------------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAI--RKNPQGA 116 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC------------CCcccceeeehhhhhcccchhhhhhhhhhhh--hccchHH
Confidence 3444455556677777776665554431 1122222222334445555554433322222 1233356
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 003872 237 YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQ-G 315 (790)
Q Consensus 237 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-~ 315 (790)
.+|..+...+-..|++++|+.+|+.+.+.... ....|-.+..++...|+.+.|.+.|.+..+. .|+.....+-+. .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 78888888888889999999999998887432 5677888888888899999999988888765 566555444443 3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 003872 316 CCKSYRMDDAMKIFSEMQYNGLIPD-TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS-CWTHNILIDGLFRNGRAE 393 (790)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 393 (790)
+...|++++|...+.+..+. .|. ...|..|...+-..|+...|++-|++..+.. |+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 44568888888888887765 233 3467777778888899999999999888753 33 567888888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 394 AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
+|...+.+....... ....+..+...|..+|..|.|+..+++.++.... -...|+.|..++...|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999888887765322 4566777888888999999999999998876332 36789999999999999999999998877
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
.-
T Consensus 348 ~l------------------------------------------------------------------------------ 349 (966)
T KOG4626|consen 348 RL------------------------------------------------------------------------------ 349 (966)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 62
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM 633 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 633 (790)
.+..++..+.|...|...|.+++|..+|....+-. +-=...++-|.
T Consensus 350 ---------------------------------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa 395 (966)
T KOG4626|consen 350 ---------------------------------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLA 395 (966)
T ss_pred ---------------------------------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHH
Confidence 12356677889999999999999999999887653 22345678899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAG 711 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 711 (790)
..|-..|++++|+.-+++.++- .|+ ...|+.+...|...|+++.|.+.+.+++.-+ |. ....+.|..+|-.+|
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccC
Confidence 9999999999999999999984 565 5688999999999999999999999998753 43 457888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCC-------HHHHHHHHHHHHhCCCCCCccc
Q 003872 712 RFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGR-------LKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~t 769 (790)
++.+|++-|++... ++|| ...|..++.++.--.+ +++..++..+-.+...-|...-
T Consensus 471 ni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP 534 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHP 534 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCc
Confidence 99999999999987 5777 4556666665544333 3445555555554444444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=183.46 Aligned_cols=304 Identities=14% Similarity=0.138 Sum_probs=197.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCH
Q 003872 351 MFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVD---GITFSIVVLQLCREGQI 427 (790)
Q Consensus 351 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 427 (790)
+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666543 22344555666666666666666666666655422211 13455666666667777
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCC
Q 003872 428 EEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFP 507 (790)
Q Consensus 428 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 507 (790)
+.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------------- 176 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-------------------------- 176 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch--------------------------
Confidence 77777777766542 234566666777777777777777777666542211000
Q ss_pred CCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCC
Q 003872 508 YKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMG 587 (790)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (790)
T Consensus 177 -------------------------------------------------------------------------------- 176 (389)
T PRK11788 177 -------------------------------------------------------------------------------- 176 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
......+..++..+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.+
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 0011234456666777788888888888777654 334556677777888888888888888888765332224567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc---
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK--- 744 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--- 744 (790)
+.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccC
Confidence 88888888888888888887765 355566677788888888888888888877764 6777777777776654
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.|+.++++.++++|.+.++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 457788888888888766666654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=182.54 Aligned_cols=308 Identities=15% Similarity=0.102 Sum_probs=204.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHH
Q 003872 317 CKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS---CWTHNILIDGLFRNGRAE 393 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 393 (790)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555442 11333455555555555555555555555554321111 134555566666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHhcCCchHHHHHH
Q 003872 394 AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD----LVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
.|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665542 22455566666666666666666666666665543221 123445566667777778887777
Q ss_pred HHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCC
Q 003872 470 KHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDE 549 (790)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (790)
+++.+..
T Consensus 204 ~~al~~~------------------------------------------------------------------------- 210 (389)
T PRK11788 204 KKALAAD------------------------------------------------------------------------- 210 (389)
T ss_pred HHHHhHC-------------------------------------------------------------------------
Confidence 7766521
Q ss_pred CCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH
Q 003872 550 WSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY 629 (790)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 629 (790)
+.+...+..++..|.+.|++++|.++|+++.+.+......++
T Consensus 211 --------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 211 --------------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred --------------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 112334556777888888888888888888765422224567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 630 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
+.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhh
Confidence 88889999999999999999998886 356666788899999999999999999998875 4888888888887775
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 710 ---AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 710 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
.|+.+++..++++|.+.++.|++. ..|.+.|-.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 568899999999999887777776 346666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-16 Score=175.05 Aligned_cols=432 Identities=14% Similarity=0.010 Sum_probs=293.0
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.+......+.+.|++++|+..|+...+ +.|+...|..+..+|.+.|++++|+..++...+.... +...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 455667778888888888888888775 4567777888888888888888888888888876322 456777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
...|++++|...|......+ ..+......++..+.. ..+........+.. +++...+..+.. +..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 88888888888877665443 1122222222222211 12222233332221 111112222211 22111111111
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSC-WTHNILIDG---LFRNGRAEAAYTLFCDLKKKG-KFV-DGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
.-+....+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 1110 111111111 123468999999999988764 223 34567777888889999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHH
Q 003872 436 EMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEI 515 (790)
Q Consensus 436 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (790)
+.++.... ....|..+...+...|++++|...++++.+.
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------------------------- 394 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL---------------------------------------- 394 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------
Confidence 99876322 4667888888899999999999999988762
Q ss_pred HHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHH
Q 003872 516 MSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVN 595 (790)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (790)
.+.++.++.
T Consensus 395 -----------------------------------------------------------------------~p~~~~~~~ 403 (615)
T TIGR00990 395 -----------------------------------------------------------------------NSEDPDIYY 403 (615)
T ss_pred -----------------------------------------------------------------------CCCCHHHHH
Confidence 233567788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..+. .+.+...++.+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc
Confidence 88999999999999999999998875 456777888888999999999999999999876 3456788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCC----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHH
Q 003872 676 RADLASTILDKLMKQGGGYL----DVV-MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 750 (790)
++++|++.|++.++...-.. +.. .++.....+...|++++|.+++++..... +.+...+..+..++.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 99999999999887531100 111 11222223344699999999999988753 2235678899999999999999
Q ss_pred HHHHHHHHHhC
Q 003872 751 AHYFLKMMLDS 761 (790)
Q Consensus 751 A~~~~~~m~~~ 761 (790)
|++++++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-16 Score=172.83 Aligned_cols=430 Identities=13% Similarity=-0.038 Sum_probs=301.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
+......+.+.|+++.|+..|.+.++ ..|+...|..+..+|.+.|++++|++.++...+. -+.+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~-------------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~ 194 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE-------------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYS 194 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-------------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCH
Confidence 45566778899999999999999887 4566778899999999999999999999999862 23356
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 237 YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 237 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
..|..+..+|...|++++|..-|......+...+.. ...++..+.. ..+........+.. +.+...+..+. .|
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~ 267 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NY 267 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HH
Confidence 788999999999999999999888776553222222 1222222111 12223333332221 22222222222 22
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcC
Q 003872 317 CKSYRMDDAMKIFSEMQYNGLIPDT-VVYNSLLNG---MFKSRKVMEACQLFEKMVQDG-VRT-SCWTHNILIDGLFRNG 390 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~---~~~~~~~~~a~~l~~~~~~~~-~~~-~~~~~~~li~~~~~~~ 390 (790)
...........-+....+ ..+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|
T Consensus 268 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 222111212111221111 11111 111111111 123468899999999998764 223 4566778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHH
Q 003872 391 RAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMK 470 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (790)
++++|+..+++..+.... +...|..+...+...|++++|...++++.+... -+...+..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887432 456788888889999999999999999987643 367888999999999999999999999
Q ss_pred HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCC
Q 003872 471 HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEW 550 (790)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (790)
+..+.
T Consensus 424 kal~l--------------------------------------------------------------------------- 428 (615)
T TIGR00990 424 KSIDL--------------------------------------------------------------------------- 428 (615)
T ss_pred HHHHc---------------------------------------------------------------------------
Confidence 88762
Q ss_pred CCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH
Q 003872 551 SSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN 630 (790)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 630 (790)
.+.+...+..+...+.+.|++++|+..|+...+.. +.+...|+
T Consensus 429 ------------------------------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~ 471 (615)
T TIGR00990 429 ------------------------------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYN 471 (615)
T ss_pred ------------------------------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 12345556678888999999999999999988764 55678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIA------TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
.+...+...|++++|+..|++........+.. .++..+..+...|++++|.+++++..... +.+...+..+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la 549 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 99999999999999999999988763221111 12222233445699999999999988763 33556788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003872 705 NVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.++...|++++|.++|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-16 Score=171.22 Aligned_cols=338 Identities=13% Similarity=0.061 Sum_probs=273.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+..-...++..+.+.|++++|..+++........ +...+..++.++...|+++.|++.|+++.... +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3344556778888999999999999999987644 56667777778888999999999999999875 346778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+...|++++|...++++++. .+.+...+..+...+...|++++|...++.+..... .+...+..+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~~~~ 184 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMIATC 184 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 999999999999999999885 455567888899999999999999999998875322 233333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM 322 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 322 (790)
..+...|++++|...++.+.+....++...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCc
Confidence 3477889999999999998877544455556666788899999999999999998775 55677888899999999999
Q ss_pred HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003872 323 DD----AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 323 ~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 398 (790)
++ |...|++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|+..
T Consensus 263 ~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 899999988763 2356788889999999999999999999999864 33566777888999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 399 FCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRG 441 (790)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 441 (790)
++.+...+.. +...+..+..++...|++++|...|++..+..
T Consensus 341 l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 341 FVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999876432 22334445677889999999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-15 Score=165.91 Aligned_cols=334 Identities=12% Similarity=0.060 Sum_probs=243.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
....++..+.+.|+++.|..+++........ +...+..++.+....|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445667777888888888888888877444 34445555566667888888888888888764 445667777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYT 397 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 397 (790)
..|++++|...+++..... +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888888888652 224566777888888888888888888877665322 23333333 34777888888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchH----HHHHHHHHH
Q 003872 398 LFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDF----TERLMKHIR 473 (790)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~ 473 (790)
.++.+......++...+..+...+...|++++|...++++.+.... +...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 8888777644334445555567778888888888888888876433 56777778888888888875 677777665
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
+.
T Consensus 278 ~l------------------------------------------------------------------------------ 279 (656)
T PRK15174 278 QF------------------------------------------------------------------------------ 279 (656)
T ss_pred hh------------------------------------------------------------------------------
Confidence 52
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM 633 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 633 (790)
.|.++.++..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 280 ---------------------------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 280 ---------------------------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred ---------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 23356677788888888888888888888887765 44556677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTDI-ATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.++.+.|++++|+..++.+.... |+. ..+..+..++...|+.++|...|+++.+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888888888888888887753 333 334445667788888888888888887764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-14 Score=137.46 Aligned_cols=324 Identities=17% Similarity=0.176 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHH-HHHHHHHHHhccCCCCCccccc
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK--QLGLAM-SILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~-~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
.+=+.|+.. ...|.+.++.-+|+.|.+.|.+.++.+-..|+..-+-.+ ++.-|. +.|-.+...+.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~---------- 185 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED---------- 185 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc----------
Confidence 344555544 467899999999999999999889888777776644433 333221 223333222111
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+..+| +.|... .-+|+.. +.+..+|.++|.+.|+--..+.|.+++++......+.+..+||.
T Consensus 186 --S~~sW--------K~G~vA--dL~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 186 --STSSW--------KSGAVA--DLLFETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNG 247 (625)
T ss_pred --ccccc--------ccccHH--HHHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhh
Confidence 11111 222222 2233332 23678899999999999999999999999988888889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD----AMKIFSEMQYNGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (790)
+|.+-.-..+ .++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..++
T Consensus 248 lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 9876554332 7888889888889999999999999999998765 5678888999999999999999999988
Q ss_pred hcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHH
Q 003872 353 KSRKVME-ACQLFEKMVQ----DGVRT----SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG----KFVD---GITFSI 416 (790)
Q Consensus 353 ~~~~~~~-a~~l~~~~~~----~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ 416 (790)
+.++..+ +..++.++.. +.++| +...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 8887644 4444444332 22332 44556677788888888888888766554331 2233 233677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (790)
+....|+....+.....|+.|.-.-+-|+..+...++++....|.++-..+++..+...|
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888899999999999999988888899999999999999999999999988887754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-15 Score=167.81 Aligned_cols=372 Identities=10% Similarity=0.030 Sum_probs=214.2
Q ss_pred CcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 81 KHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
..++.-..-.+.+....|+.++|+++|....... +.+...+..+...+...|++++|.++|++..+.. +.++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3566666667788888899999999988887633 4466678888888899999999999999888764 3456777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
..++...|++++|+..++++++. .+.+.. +..+...+...|+.++|...++++.+. .+.+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~------------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~ 154 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG------------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPT 154 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh------------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 88888899999999988888875 344445 777777888888888888888888762 233455556
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDL------HTYNSLIQVLC-----VVGKV---KDALIVWEELKGS-GHEPN 305 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~ 305 (790)
.+...+...|..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 667777777888888887776553 2221 01111111111 11122 4556666665532 11121
Q ss_pred HH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CH
Q 003872 306 EF-TH----RIIIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT---SC 376 (790)
Q Consensus 306 ~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~---~~ 376 (790)
.. .+ ...+.++...+++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.+....... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 01122334556666666666666654321 221 11123445666666666666666655432100 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003872 377 WTHNILIDGLFRNGRAEAAYTLFCDLKKKGK-----------FVDG---ITFSIVVLQLCREGQIEEALRLVEEMEGRGF 442 (790)
Q Consensus 377 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 442 (790)
.....+..++...|++++|..+++.+..... .|+. ..+..+...+...|++++|+.+++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2344444455666666666666666554421 0111 122333444444555555555555554432
Q ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 443 VVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 443 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
+-+...+..+...+...|++++|++.+++..+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22344444444455555555555555544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-15 Score=165.91 Aligned_cols=427 Identities=11% Similarity=-0.009 Sum_probs=247.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|...++++++. .
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------~ 79 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------E 79 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------C
Confidence 345555555666666677777776666665522 234445666666666666666666666666553 2
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.+...+..+...+...|++++|...+++..+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~ 155 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTE 155 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 333444445555555555555555555555542 222333 555555555555555555555555554222 2333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGM----- 351 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----- 351 (790)
+..++...+..+.|++.++.... .|+. ..-+ .. .....++...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~---~~~l-------~~-------------------~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAE---KRDL-------EA-------------------DAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHH---HHHH-------HH-------------------HHHHHHHHhhccccc
Confidence 44444455555555555544432 1210 0000 00 0011111111
Q ss_pred HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHH
Q 003872 352 FKSRKV---MEACQLFEKMVQD-GVRTSCW-TH----NILIDGLFRNGRAEAAYTLFCDLKKKGKF-VDGITFSIVVLQL 421 (790)
Q Consensus 352 ~~~~~~---~~a~~l~~~~~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 421 (790)
...+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 111223 6677777777753 1122211 11 11133456778899999999998877532 322 222246678
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccc
Q 003872 422 CREGQIEEALRLVEEMEGRGFVV---DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSK 498 (790)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 498 (790)
...|++++|...|+++.+..... .......+..++...|++++|...++.+.+.... ....+.
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~------------- 348 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG------------- 348 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC-------------
Confidence 88999999999999887653221 1345666777788999999999999888763211 000000
Q ss_pred cccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHh
Q 003872 499 RKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARG 578 (790)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 578 (790)
T Consensus 349 -------------------------------------------------------------------------------- 348 (765)
T PRK10049 349 -------------------------------------------------------------------------------- 348 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 579 LRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.....+.......+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|+..+++..... +
T Consensus 349 --~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-P 424 (765)
T PRK10049 349 --SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-P 424 (765)
T ss_pred --CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Confidence 00000000112345567777888899999999998887764 5667788888888888999999999999888863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.+...+......+...|++++|+.+++++++..
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 345666667777888889999999999888864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-14 Score=135.91 Aligned_cols=340 Identities=16% Similarity=0.182 Sum_probs=254.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChH-HHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KID-FAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~-~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+-+.++ .+...|.+.++--+++.|...|+..++..-..|++.-+-.+ ++- .-.+.|-.|..+|-. +..+|
T Consensus 117 ~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 3444444 34567899999999999999999888888777766544332 222 334566666666532 22233
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
+.|++.+ ++.+. .+....++..+|.++++--..+.|.+++++... ...+.+..++|.
T Consensus 191 ----K~G~vAd---L~~E~---------------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET---------------LPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNG 247 (625)
T ss_pred ----ccccHHH---HHHhh---------------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhh
Confidence 3344433 33332 566678999999999999999999999999988 667789999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK----DALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
+|.+..-. .-.+++.+|....+.||..|||+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..++
T Consensus 248 lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 99875433 23789999999999999999999999999999865 46678899999999999999999999999
Q ss_pred hcCCHHH-HHHHHHHHHH----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHH
Q 003872 318 KSYRMDD-AMKIFSEMQY----NGLI---P-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG----VRTS---CWTHNI 381 (790)
Q Consensus 318 ~~~~~~~-a~~~~~~m~~----~~~~---p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~----~~~~---~~~~~~ 381 (790)
+.++..+ +..++.++.. ..++ | |...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 9888754 4555555442 2222 2 44567778888889999998888876654321 2232 234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
+....|+....+....+|+.|.-.-..|+..+...++++....+.++-.-++|.++...|...+.....-++..++
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 7788888999999999999999988889999999999999999999999999999998875544444443443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-14 Score=155.06 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 003872 358 MEACQLFEKMVQD-GVRTSC-----WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEAL 431 (790)
Q Consensus 358 ~~a~~l~~~~~~~-~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 431 (790)
+.|+.-++.+... +-.|.. .+..-.+.++...++..++++.++.+...+......+-..+.++|...+.+++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4555556665542 111321 1222445677888999999999999998887767778889999999999999999
Q ss_pred HHHHHHHhCC-----CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc-hHhHHHHHHHHhhccccccccCCCC
Q 003872 432 RLVEEMEGRG-----FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD-VLKWKADVEATMKSRKSKRKDYTPM 505 (790)
Q Consensus 432 ~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 505 (790)
.+++.+.... ..++......|..++...+++++|..+++++.+. .|- ...|
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~--------------------- 404 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY--------------------- 404 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc---------------------
Confidence 9999986653 2334445678999999999999999999998863 120 0000
Q ss_pred CCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCC
Q 003872 506 FPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKG 585 (790)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (790)
....+.
T Consensus 405 --------------------------------------------------------------------------~~~~~~ 410 (822)
T PRK14574 405 --------------------------------------------------------------------------GLPGKE 410 (822)
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 000000
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
+.+.=......++..+...|++.+|.+.++.+.... +-|......+.+.+...|.+.+|...++.+... -+-+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHH
Confidence 111122345566777888999999999999998776 778888899999999999999999999777665 344566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+.++...|++.+|..+.+.+.+..
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 88888889999999999999988864
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-13 Score=152.12 Aligned_cols=436 Identities=11% Similarity=0.075 Sum_probs=294.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
..+-...+.|+++.|+..|+...+....-....+ .++..+...|+.++|+..+++.... -+.....+..+...+...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 3344566777777888888777766532112233 6667777778888887777777621 1122333444455677777
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhc
Q 003872 169 QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGC 248 (790)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 248 (790)
++++|+++++++++. .+.+...+..++..+...++.++|++.++.+.. ..|+...+..++..+..
T Consensus 117 dyd~Aiely~kaL~~------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 117 RWDQALALWQSSLKK------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRA 181 (822)
T ss_pred CHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHh
Confidence 888888888877775 344455566667777777888888877777765 23444555444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHHHH-----H
Q 003872 249 WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFT------HRIIIQGC-----C 317 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------~~~li~~~-----~ 317 (790)
.++..+|++.++++.+.... +...+..+..++.+.|-...|.++..+-... +.+.... ...+++.- .
T Consensus 182 ~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 55665588888888877322 5666677777778888777777776654321 0111100 01111100 0
Q ss_pred hcCC---HHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 318 KSYR---MDDAMKIFSEMQYN-GLIPDT-VVY----NSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 318 ~~~~---~~~a~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
..++ .+.|+.-++.+... +-.|.. ..| .-.+-++...++..++++.|+.+...+.+.-..+-..+..+|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 34455555655542 212322 222 23345677889999999999999988866455678889999999
Q ss_pred cCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------ccCH-HHH
Q 003872 389 NGRAEAAYTLFCDLKKKG-----KFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF-------------VVDL-VTI 449 (790)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~~~~-~~~ 449 (790)
.+++++|..+++.+.... ..++......|..++...+++++|..+++.+.+... .||- ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999987653 122334457889999999999999999999987311 1232 234
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..++..+...|+..+|++.++++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~------------------------------------------------------ 445 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST------------------------------------------------------ 445 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------------
Confidence 45677788999999999999998762
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNL 609 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 609 (790)
.|.|+.+...+...+...|++.+
T Consensus 446 ---------------------------------------------------------aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 446 ---------------------------------------------------------APANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHhcCCHHH
Confidence 35688888999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
|...++...... +-+..+....+..+...+++.+|..+.+.....
T Consensus 469 A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 469 AEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998877664 556677788888899999999999999998876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-15 Score=140.27 Aligned_cols=498 Identities=12% Similarity=0.069 Sum_probs=320.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNV-YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+-.++..|.+-|.......+|+..|+-+++....|+... -..+...+.+...+.+|+..++..+.....-. .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------k 272 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------K 272 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-------h
Confidence 344555677778888889999999999888766666643 33455677888889999999998887531100 0
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH--
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY-- 274 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-- 274 (790)
.-.....+.+...+.+.|.++.|+..|+...+ ..|+..+--.|+-++...|+.++..+.|.+|......||..-|
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 11134456666677889999999999998876 4577666555666666779999999999999765433332211
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCC
Q 003872 275 ------NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEF----THRIIIQGCCKSYR----MDDAMKIFSEMQYNGLIPD 340 (790)
Q Consensus 275 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~ 340 (790)
..|+.-..+.. .++.|.+.. +.+.. |-..+|.-- -.-+ .+-.++.++.-....+..+
T Consensus 350 ~~ddp~~~ll~eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred CcCCcchHHHHHHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhh
Confidence 11221111111 111111110 11110 000000000 0000 1122222222111101101
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 003872 341 TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR--NGRAEAAYTLFCDLKKKGKFVDGITFSIVV 418 (790)
Q Consensus 341 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 418 (790)
.. . .-...+.+.|+++.|.++++-+.+..-+.-...-+.|-..+.- ..++..|..+-........- +......--
T Consensus 421 le-i-~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkg 497 (840)
T KOG2003|consen 421 LE-I-NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKG 497 (840)
T ss_pred hh-h-hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCC
Confidence 11 0 1123467899999999999988776544333333433333222 34577777766655443111 222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHH---HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 419 LQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLL---IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
......|++++|.+.+++.+.. |...-.+|. -.+...|+.++|...|-++..-
T Consensus 498 n~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-------------------- 553 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------------------- 553 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------------
Confidence 2334578999999999999887 443333333 3467889999999888776540
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 554 -------------------------------------------------------------------------------- 553 (840)
T KOG2003|consen 554 -------------------------------------------------------------------------------- 553 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
...+..++..+.+.|-...+..+|++++-..... ++.|+....-|...|-+.|+-..|++.+-+--+.
T Consensus 554 -----------l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 554 -----------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred -----------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 0124556667888888889999999998776554 4778889999999999999999999887765554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCChHH
Q 003872 656 FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG-KAGRFDEANMLFEQMRTSGINPDVVT 734 (790)
Q Consensus 656 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~ 734 (790)
++.++.+..-|...|....-+++|+.+|++..- +.|+..-|..|+..|. +.|++++|..+|++..++ ++-|...
T Consensus 622 -fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 622 -FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred -cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHH
Confidence 677888888888889999999999999998754 7899999999988776 469999999999998775 7778999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..-|++.+...|. .++.++-+++.
T Consensus 697 lkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 697 LKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHhccccc-hhHHHHHHHHH
Confidence 9999999988886 44555555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-12 Score=135.47 Aligned_cols=370 Identities=13% Similarity=0.065 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
.....+...|++++|..++.++.+.+ +.....|..|...|-..|+.+++...+-.....+ +.|...|..+.......|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33445556699999999999999987 4488899999999999999999998887665554 447788999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchh----hHHHHHH
Q 003872 169 QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY----GYNICIH 244 (790)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~ 244 (790)
+++.|.-.|.++++. .+++....-.-...|.+.|+...|.+-|.++....+ +.|.. .--.+++
T Consensus 222 ~i~qA~~cy~rAI~~------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 222 NINQARYCYSRAIQA------------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAH 288 (895)
T ss_pred cHHHHHHHHHHHHhc------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Confidence 999999999999986 455666666677889999999999999999987322 22222 2233466
Q ss_pred HHhccCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 003872 245 AFGCWGDLHTSLRLFKEMKEK-GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTH-------------- 309 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-------------- 309 (790)
.+...++-+.|.+.++..... +-.-+...++.++..+.+..+++.|......+......+|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 677788889999988887763 22345677889999999999999999998887762222222111
Q ss_pred --------H----HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003872 310 --------R----IIIQGCCKSYRMDDAMKIFSEMQYNGL--IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS 375 (790)
Q Consensus 310 --------~----~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~ 375 (790)
. -++-++......+....+.....+..+ .-+...|.-+..++...|++.+|+.+|..+...-.--+
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1 122223334444444445555555553 33456788889999999999999999999987654456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH--------hCCCccCHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME--------GRGFVVDLV 447 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~--------~~~~~~~~~ 447 (790)
...|-.+.++|...|.++.|.+.|+..+..... +...--.|...+.+.|+.++|.+.++.+. ..+..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 778889999999999999999999998887432 44555667777888999999999999854 234556666
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 448 TISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 448 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
........+...|+.++-..+...|..
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677777788888888887766666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-11 Score=121.84 Aligned_cols=463 Identities=13% Similarity=0.061 Sum_probs=272.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH----HHCCCCCCHhHHHHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEM----KEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~ 281 (790)
|..+|++...|+.|..++....+ .++.+...|.+-...--.+|+.+...+++++- ...|+..+...|-.=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34445555555666666665553 24445555555555555556666555555432 3345555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVME 359 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 359 (790)
-+.|..-.+..+.......|+.-. ..||..-...|.+.+.++-|..+|....+- .+-+...|......--..|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 555666666666555555544322 345555555566666666666666555543 12233444444444444555566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 360 ACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEG 439 (790)
Q Consensus 360 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 439 (790)
...+|.+....- +-....|-.....+...|++..|..++....+.... +...|-.-+........++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 666666555541 223334444444455556666666666555555332 444455555555555666666666655543
Q ss_pred CCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhh
Q 003872 440 RGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLI 519 (790)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (790)
..|+...|..-+..-.-.++.++|.+++++..+. .|+...+-.++ |.+.|-+..
T Consensus 647 --~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml---------------------GQi~e~~~~- 700 (913)
T KOG0495|consen 647 --ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML---------------------GQIEEQMEN- 700 (913)
T ss_pred --cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH---------------------hHHHHHHHH-
Confidence 3344455554445445555666666666555542 12211111100 000000000
Q ss_pred cCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH
Q 003872 520 GSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS 599 (790)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 599 (790)
....+.--..+...-|..+..|..+..
T Consensus 701 -----------------------------------------------------ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 701 -----------------------------------------------------IEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred -----------------------------------------------------HHHHHHHHHhccccCCCCchHHHHHHH
Confidence 000000011111122445667777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 600 IFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADL 679 (790)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 679 (790)
.--+.|.+-.|..+++...-.+ +-+...|-..|++-.+.|..+.|..+..++++. ++.+...|..-|....+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 7788889999999999887766 668888999999999999999999999888876 55566777777777777777555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 680 ASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 680 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
....+.+ ..-|.....++...+-....++.|+..|.+....+ .-+-.+|.-+...+.+.|.-++-.++++++.
T Consensus 806 s~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5554443 34477777777778888889999999999998753 2246788888899999999888899998887
Q ss_pred hC
Q 003872 760 DS 761 (790)
Q Consensus 760 ~~ 761 (790)
..
T Consensus 879 ~~ 880 (913)
T KOG0495|consen 879 TA 880 (913)
T ss_pred cc
Confidence 43
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-11 Score=129.44 Aligned_cols=615 Identities=12% Similarity=0.021 Sum_probs=391.7
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
+++...|.+++.-+.+..| ..+..|..+..++-..|+.+.+...+--+...+. -|...|..+.....+.|.++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 4678889999988878777 6778999999999999999999988866555543 37789999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc----hHHHHHHHHHhccc
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV----ACNELLVALRKSDR 215 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~ 215 (790)
-.|.+..+..+ ++...+---...|-+.|+...|...|.++.... .+.+.. .--..+..+...++
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-----------p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-----------PPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-----------CchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999863 455566666788999999999999999998853 111222 22234556777787
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC---------------------------C
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL---------------------------V 268 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~ 268 (790)
.+.|.+.++......+-.-+...+++++..+.+...++.|......+..... .
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8999998888876444455677889999999999999999998888876221 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH--EPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
++..+ -.++-++.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+...|-.
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22222 1223344455555566666666666653 33456788899999999999999999999997755556778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK--------GKFVDGITFSIVV 418 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll 418 (790)
+..+|...|..++|.+.|+..+... +-+...--.|-..+-+.|+.++|.+.++.+... +..|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998863 234455566777888999999999999886432 2344555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC----------------------CccCHHHHHHHHHHHHhcCCchHHHHHHH------
Q 003872 419 LQLCREGQIEEALRLVEEMEGRG----------------------FVVDLVTISSLLIGFHKYGRWDFTERLMK------ 470 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------ 470 (790)
..+.+.|+.++-..+...|+... ..........++.+-.+.++....+.-..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 67778888877655555543211 11122233334444444443222211111
Q ss_pred HHHhCCCccchH--hHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCC
Q 003872 471 HIRDGNLVLDVL--KWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSD 548 (790)
Q Consensus 471 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (790)
-....++..+.- .+.-++...++ -++..+|++++..+..
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k---------------~~r~qeAl~vv~~a~~------------------------ 654 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAK---------------LQRVQEALSVVFTALE------------------------ 654 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHh------------------------
Confidence 111122222211 11222222222 2334444444332210
Q ss_pred CCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CC---CC
Q 003872 549 EWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM-GV---HP 624 (790)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~---~~ 624 (790)
...+... .......-...+.+.+..+++..|...++.|... +. .-
T Consensus 655 -----------------------~~~f~~~--------~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 655 -----------------------AYIFFQD--------SEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred -----------------------hhhhhcc--------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 0000000 0000112234556667788999999998888654 11 12
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
-...|+..++...+.++-.--.+.+..........+........+-....+.+.-|+..+-.+.... ||....+..+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~---pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN---PDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC---CCCcHHHHHH
Confidence 2345666666667766655555555544433221112222222233456688889999887777754 5543333322
Q ss_pred H-HHHh----------cCCHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 705 N-VLGK----------AGRFDEANMLFEQMRTS-GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 705 ~-~~~~----------~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
. ++.. +-.+-.+..++.+-.+. +..-...++-.+.++|...|-..-|..++++.+ ++.|-.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~ 853 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKD 853 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCccc
Confidence 2 1111 11233455555544442 111245677789999999999999999999998 444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-11 Score=115.76 Aligned_cols=470 Identities=8% Similarity=0.013 Sum_probs=332.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...|-....-=...+++..|..+|+.++..+. -+...|..-+..=.++.....|..++++.+..-+ .-...|...+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-RVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-RVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence 344444444555566788999999999988763 3667888888888899999999999999988632 23335666666
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
+--..|++..|.++|.+.++ ..|+..+|++.+..-.+...++.|..+++...- +.|++.+|-..
T Consensus 150 mEE~LgNi~gaRqiferW~~-------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wiky 213 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKY 213 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHH
Confidence 66778999999999999987 899999999999999999999999999999875 56999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEK-GL-VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCK 318 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~-g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~ 318 (790)
.+.-.+.|++..|..+|....+. |- ..+...|.+....-.+...++.|.-+|+-.... ++.+ ...|......--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHH
Confidence 99999999999999999988764 11 112334444444445577789999998887765 2333 3445555544445
Q ss_pred cCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHH-
Q 003872 319 SYRMDDAMKI--------FSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW-------THNIL- 382 (790)
Q Consensus 319 ~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-------~~~~l- 382 (790)
-|+.....+. ++.+.+.+ +-|-.+|--.++.-...|+.+...++|+....+ ++|-.. +|--+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 5654443332 23344432 346777888888888889999999999998875 444221 12111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 383 --IDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQ----LCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 383 --i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
+-.-....+.+.+.++++..++. ++....||..+--. ..++.++..|.+++...+ |..|...+|...|..=
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 11123467888999999888874 44455565554333 346778889999888776 5677888888888888
Q ss_pred HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCC
Q 003872 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGD 536 (790)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (790)
.+.+++|....++++.++.
T Consensus 448 lqL~efDRcRkLYEkfle~------------------------------------------------------------- 466 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEF------------------------------------------------------------- 466 (677)
T ss_pred HHHhhHHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 8889999999999888773
Q ss_pred CcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003872 537 AKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEI 616 (790)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 616 (790)
+|.+..+|......-...|+.+.|..+|+.
T Consensus 467 --------------------------------------------------~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 467 --------------------------------------------------SPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred --------------------------------------------------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 233555666666666777888889999888
Q ss_pred HHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-----hcC-----------CHHH
Q 003872 617 FTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG-----KMG-----------RADL 679 (790)
Q Consensus 617 ~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g-----------~~~~ 679 (790)
.++.. .......|-+.|+.-...|.++.|..+++.+++. .+...+|.++..--. +.+ ....
T Consensus 497 Ai~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~ 574 (677)
T KOG1915|consen 497 AISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKR 574 (677)
T ss_pred HhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHH
Confidence 77642 2223456777777778888899999998888875 233445555443222 223 4556
Q ss_pred HHHHHHHHHH
Q 003872 680 ASTILDKLMK 689 (790)
Q Consensus 680 A~~~~~~~~~ 689 (790)
|..+|+.+..
T Consensus 575 AR~iferAn~ 584 (677)
T KOG1915|consen 575 ARKIFERANT 584 (677)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-14 Score=144.89 Aligned_cols=589 Identities=14% Similarity=0.105 Sum_probs=345.8
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH
Q 003872 76 LRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN 155 (790)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (790)
...+..|+..+|..+|.-||..|+.+.|- +|..|.....+.+...|+.++......++.+.+. .|.++
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34567789999999999999999999999 9999999888889999999999999999888776 58899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc----------ccCC-CcchHHHHHHHHHhccchHHHHHHHH
Q 003872 156 VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV----------ESLP-GCVACNELLVALRKSDRRSEFKQVFE 224 (790)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (790)
+|..|+.+|...||+.. .+..++-+........+.... ...| ....-...+....-.|-++.+++++.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999765 333333111111000000000 0000 01111223444455566666666665
Q ss_pred HHHhcCCCCCchhhHHHHHHHHhcc-CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003872 225 RLKEQKEFEFDIYGYNICIHAFGCW-GDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE 303 (790)
Q Consensus 225 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 303 (790)
.++......|..+ +++-+... ..+++-..+-+...+ .|++.+|..++++-..+|+++.|..++.+|.+.|++
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 5544222222222 23333222 233333333333332 578888999998888899999999999999999988
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 304 PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILI 383 (790)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li 383 (790)
.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+.-.+-.+..+|....+ +.| .+....+++-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAav 304 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAV 304 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHH
Confidence 888877777765 677788888888888889999988888777666665542211 112 12223333333
Q ss_pred HHHHHcC-----CH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--cc-CHHHHH
Q 003872 384 DGLFRNG-----RA-----EAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF--VV-DLVTIS 450 (790)
Q Consensus 384 ~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~-~~~~~~ 450 (790)
..-+-.| ++ .-....+++..-.|+......|...... ..+|+-+++.++...|..--. .+ ++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 2222222 11 1122222222233444344444433332 336777777777776653321 11 334455
Q ss_pred HHHHHHHhcCCchHHHHHHH--HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 451 SLLIGFHKYGRWDFTERLMK--HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
.++.-|.+.-+......++. +....+.
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l--------------------------------------------------- 412 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNL--------------------------------------------------- 412 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh---------------------------------------------------
Confidence 54544433322111111111 1110000
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcC----CCCcchHHHHHHHHHHHHHc
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGK----GMGTFDIDMVNTFLSIFLAK 604 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~ 604 (790)
+....|-+..+...+.....-....++--....... .....--+.-+.++..+++.
T Consensus 413 --------------------~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 413 --------------------NSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred --------------------chhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 000001111111111000000000000000000000 01122234556777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTDIATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 682 (790)
-+..+++..-+.....-+. ..|..||.-++.....+.|..+.++.... .+..|..-+..+.+...+.+....+..
T Consensus 473 ~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 7777776554444333222 67999999999999999999999987653 233455667888899999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 683 ILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 683 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+++++.+.--..|+ ..++..+++.....|+.+...++++-+...|+.-+ .-++....+.++...|+++.+...+.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk 625 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK 625 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH
Confidence 99998875423332 34566677777888999999999998888777653 34567778889999999988887543
Q ss_pred CCCCCccchhHHHHH
Q 003872 762 GCTPNHVTDTTLDFL 776 (790)
Q Consensus 762 ~~~p~~~t~~~l~~l 776 (790)
++|.+.-...+..+
T Consensus 626 -yk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 626 -YKPYPKDLEGLCRL 639 (1088)
T ss_pred -hcCChHHHHHHHHH
Confidence 45555444444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-11 Score=119.17 Aligned_cols=443 Identities=11% Similarity=0.037 Sum_probs=305.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
+...|....+.-...+++..|.++|++++.. ...+...|--.+.+-.+...+..|..+++..... +
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--l 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--L 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--c
Confidence 3444555555555667778888888888765 4556667777788888888888888888888752 3
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
|--...|-..+..--..|++..|.++|+.-.+. .|+...|++.+..-.+.+.++.|..+++...-. .|++..|--.
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 323345555666666678999999999988765 889999999999999999999999999988755 6888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Q 003872 313 IQGCCKSYRMDDAMKIFSEMQYN-GL-IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS--CWTHNILIDGLFR 388 (790)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~li~~~~~ 388 (790)
.+.-.++|+...|..+|....+. |- ..+...+.++...-.+...++.|.-+|+-.+.+= +.+ ...|..+..---+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 88888889999898888887653 10 1122344444444455677888888888877752 222 3344444444344
Q ss_pred cCCHHHHHHH--------HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCH--HHHHHHH----H
Q 003872 389 NGRAEAAYTL--------FCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDL--VTISSLL----I 454 (790)
Q Consensus 389 ~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~----~ 454 (790)
-|+.....+. ++.++..+ +.|-.+|--.++.-...|+.+...++++.++.. ++|-. ..|.-.| +
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 5554433332 33444443 236777777888888889999999999999876 44421 1121111 1
Q ss_pred -HH---HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccccc
Q 003872 455 -GF---HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANL 530 (790)
Q Consensus 455 -~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (790)
++ ....+.+.++++++..++ -++...+|+
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF---------------------------------------------- 403 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLD-LIPHKKFTF---------------------------------------------- 403 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH----------------------------------------------
Confidence 11 345677778888777766 111111111
Q ss_pred CCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 003872 531 GSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLA 610 (790)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 610 (790)
..+|-.....-.++.++..|
T Consensus 404 ------------------------------------------------------------aKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 404 ------------------------------------------------------------AKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHcccHHH
Confidence 22344555566677788888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 611 CKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 611 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.+++...+ |..|-..+|...|..-.+.++++....++++.+..+. -+..+|.-....-...|+.+.|..+|+-++.+
T Consensus 424 RkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 88887765 4577788888888888888888888888888888743 36667777777677788888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 691 GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 691 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.........|-+.|+.-...|.++.|+.+|+++.+.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 544555667778888778888888888888888863
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-11 Score=117.92 Aligned_cols=573 Identities=11% Similarity=0.020 Sum_probs=417.2
Q ss_pred hhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 64 SKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 64 ~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
..|-.+++..++.+| .++..|-+-.+.=-..|.+..|..+...=-+. ++-+.+.|.-.+ +....+.|..+..
T Consensus 268 kKaR~llKSvretnP---~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 268 KKARLLLKSVRETNP---KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHH
Confidence 445556666655555 45667766666666777777777766543333 334566665544 4456677777777
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHH
Q 003872 144 YMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVF 223 (790)
Q Consensus 144 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (790)
..++.- +.++..|-. +.--..+...-..++++.++. .+.++..|- +.......+.|+-++
T Consensus 340 ~Avr~~-P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~------------iP~sv~LWK----aAVelE~~~darilL 399 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLK---AADLESDTKNKKRVLRKALEH------------IPRSVRLWK----AAVELEEPEDARILL 399 (913)
T ss_pred HHHHhC-CCChhhhhh---HHhhhhHHHHHHHHHHHHHHh------------CCchHHHHH----HHHhccChHHHHHHH
Confidence 777653 334433322 222223344445677777764 344444444 344556677788888
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHh
Q 003872 224 ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEE----LKG 299 (790)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~ 299 (790)
.+..+- ++.+...|. ++++..-++.|..+++...+. ++-+...|-+....--..|+.+.+.+++++ +..
T Consensus 400 ~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 400 ERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 888862 444555554 455567889999999999876 566788888877777889999999998875 456
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 300 SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPD--TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 300 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
.|+..+...|-.=...|-+.|..-.+..+......-|+.-. ..+|..-...|.+.+.++-|..+|...++-- +.+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhH
Confidence 79999999999989999999999999999999888776633 3578888899999999999999999988753 44667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
.|......--..|..+....++++....-. -....|......+...|+...|..++..+.+.... +...|-.-+..-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 787777777778999999999999998733 35666777788888999999999999999987555 7888999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCC
Q 003872 458 KYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537 (790)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (790)
....++.|+.+|.+........-+..-++.+..+ .+..++++.++.+...
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~-----------------ld~~eeA~rllEe~lk------------- 679 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERY-----------------LDNVEEALRLLEEALK------------- 679 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-----------------hhhHHHHHHHHHHHHH-------------
Confidence 9999999999999988755444333333333222 2334455544433221
Q ss_pred cccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 538 KDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
.-+.-...|-.+.+.+-+.++++.|.+.|..-
T Consensus 680 ------------------------------------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 680 ------------------------------------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred ------------------------------------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 11234567888889999999999999988776
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 003872 618 TDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV 697 (790)
Q Consensus 618 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 697 (790)
.+.- +-.+..|-.|...-.+.|.+-.|..+++...-++ +-+...|-..|.+-.+.|+.+.|..+..++++. .+.+.
T Consensus 712 ~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg 787 (913)
T KOG0495|consen 712 TKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSG 787 (913)
T ss_pred cccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccc
Confidence 6552 4455677777778888899999999999988774 457889999999999999999999999998887 56677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..|.--|....+.++-......++ + ..-|....-++...+....+++.|.++|++..+.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888877777666444433333 2 3457777778888899999999999999999854
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-13 Score=130.84 Aligned_cols=173 Identities=16% Similarity=0.071 Sum_probs=137.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.+.-.+-..|++++|+..|-.+-..= ..+....-.+.+.|....+...|++++-+.... ++.|+.+..-|.+.|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 44556777899999999987664321 346677778888999999999999999988876 7889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH-hccCCHHHHHHH
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVN-GKAGRLKEAHYF 754 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~ 754 (790)
+-..|.+.+-+-.+- ++.+..+..=|..-|....-+++|..+|++..- +.|+..-|..++..| .|.|++.+|+++
T Consensus 607 dksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred chhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999887654443 566777777677778888889999999998764 799999999888655 557999999999
Q ss_pred HHHHHhCCCCCCccchhHHHHHHH
Q 003872 755 LKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 755 ~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
+++..+. ++-|. .+|.+|.|
T Consensus 683 yk~~hrk-fpedl---dclkflvr 702 (840)
T KOG2003|consen 683 YKDIHRK-FPEDL---DCLKFLVR 702 (840)
T ss_pred HHHHHHh-Cccch---HHHHHHHH
Confidence 9999865 55554 34555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-12 Score=131.84 Aligned_cols=274 Identities=16% Similarity=0.174 Sum_probs=186.5
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 003872 105 SLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEAC 184 (790)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 184 (790)
.+|-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.....|+.++.+..+.++.+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp----------- 78 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP----------- 78 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC-----------
Confidence 45667888999999999999999999999999998 999998888878888899999988888887765
Q ss_pred ccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH-
Q 003872 185 NDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK- 263 (790)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 263 (790)
..|...+|..|+.+|...|+... .+..++ ....+...+...|.-.....++..+.
T Consensus 79 -----------kep~aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c 134 (1088)
T KOG4318|consen 79 -----------KEPLADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHC 134 (1088)
T ss_pred -----------CCCchhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhccc
Confidence 46677899999999999998876 222222 11223444555555555555555432
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHH
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS-YRMDDAMKIFSEMQYNGLIPDTV 342 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~ 342 (790)
..+.-||.. .++....-.|-++.+++++..+....... +... +++-+... ..+++-..+.....+ .|+..
T Consensus 135 ~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~ 205 (1088)
T KOG4318|consen 135 CPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSE 205 (1088)
T ss_pred CcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChH
Confidence 223344433 23444455566677777776664331111 1111 23333322 223333333333332 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLC 422 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 422 (790)
+|..++..-...|+++.|..++.+|.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.
T Consensus 206 ~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 206 TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 8888888888888888888888888888887777766666655 6777888888888888888888888887777766
Q ss_pred HcCC
Q 003872 423 REGQ 426 (790)
Q Consensus 423 ~~g~ 426 (790)
++|.
T Consensus 283 ~N~~ 286 (1088)
T KOG4318|consen 283 SNGQ 286 (1088)
T ss_pred cchh
Confidence 6554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-09 Score=106.05 Aligned_cols=560 Identities=13% Similarity=0.115 Sum_probs=318.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQED-DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
..|-..+..+.++|++..-+..|+..+.. .+.....+|...+.-....+-++.+..+|++..+. ++..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666667777888888888888877664 23334467788888888889999999999998874 45557778888
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH---HHHHHHHHHHhcCCCCCc--hhh
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS---EFKQVFERLKEQKEFEFD--IYG 238 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~ 238 (790)
++..++.++|.+.+..++.... +.....+.+...|..+-....+.-+.- ....+++.+.. .-+| ...
T Consensus 179 L~~~d~~~eaa~~la~vln~d~-----f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~L 250 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDE-----FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFL 250 (835)
T ss_pred HHhccchHHHHHHHHHhcCchh-----hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHH
Confidence 9999999999999988865421 111113344566666666555543332 23344444432 2234 467
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318 (790)
Q Consensus 239 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 318 (790)
|..|.+.|.+.|.+++|..+|++.... ..+..-|..+.++|+.-..-.-+..+=-.-.+.|-+-+...+...+..+-.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999998765 345556666777766533211111111000011111122221111111100
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcC
Q 003872 319 --SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT------SCWTHNILIDGLFRNG 390 (790)
Q Consensus 319 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~------~~~~~~~li~~~~~~~ 390 (790)
.+..- +++...-..-+.++..|..-+. +..|+..+....|.+..+. +.| -...|..+...|-..|
T Consensus 329 lm~rr~~----~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 329 LMNRRPL----LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHhccch----HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 00000 1111110001123334433332 2234555555555555542 111 1234555556666666
Q ss_pred CHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----------C-Cc------cCHHHHH
Q 003872 391 RAEAAYTLFCDLKKKGKFVD---GITFSIVVLQLCREGQIEEALRLVEEMEGR----------G-FV------VDLVTIS 450 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----------~-~~------~~~~~~~ 450 (790)
+++.|..+|++..+...+-- ..+|-.-...-.+..+++.|+++.+..... | .+ -+...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 66666666666655533211 223444444444555666666665554321 0 01 1344566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccchHh--HHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 451 SLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLK--WKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
..++.-...|-++....+++.+.+..+...... |..+++- ..-++++.+.+.+-..
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe------------------h~yfeesFk~YErgI~---- 539 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE------------------HKYFEESFKAYERGIS---- 539 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------hHHHHHHHHHHHcCCc----
Confidence 666666777788888888888877665433222 2222220 0112233333222110
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHc---C
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAK---G 605 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~ 605 (790)
+| .-|.-.++|+..+.-+.+. .
T Consensus 540 -------------------------------------------LF------------k~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 540 -------------------------------------------LF------------KWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred -------------------------------------------cC------------CCccHHHHHHHHHHHHHHHhcCC
Confidence 00 0123456788877776653 3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMM--SSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 681 (790)
+++.|..+|+..++ |.+|.-.-+--|+ ..-.+.|-...|+.++++.... +++. ...||+.|.--...=.+....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 88999999999998 5554432222221 1223458888999999997765 4443 347888777655555566678
Q ss_pred HHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHhccCC
Q 003872 682 TILDKLMKQGGGYLDVVMYN---TLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.+++++++. -||...-. -..+.-++.|.+++|+.+|.-..+ .....+..-|.+.=.-=.+.|+
T Consensus 643 ~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 643 EIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 888888875 35544333 234445678999999999987766 3344456778888887888898
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-09 Score=105.41 Aligned_cols=367 Identities=14% Similarity=0.046 Sum_probs=248.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVY- 344 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~- 344 (790)
+...|...+-...-.+.+.|....|...|......- +..=..|..|...+ .+.+.+. .... |...|...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHH
Confidence 344455555445555667788888888888876431 23333343333322 2222222 2221 122121111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHH
Q 003872 345 -NSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKF--VDGITFSIVVLQL 421 (790)
Q Consensus 345 -~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~ 421 (790)
-.+..++-.....+++.+-.......|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 2234455566677888888888888887666665555566666778899999999998887321 2556677666443
Q ss_pred HHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcccccccc
Q 003872 422 CREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKD 501 (790)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 501 (790)
....+ +.++.+-.-.--+-.+.|...+.+.|+-.++.++|...|+...+-+
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN------------------------- 360 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN------------------------- 360 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------------------------
Confidence 32222 2222222211122356678888888888899999999998887632
Q ss_pred CCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhH
Q 003872 502 YTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRV 581 (790)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 581 (790)
T Consensus 361 -------------------------------------------------------------------------------- 360 (559)
T KOG1155|consen 361 -------------------------------------------------------------------------------- 360 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 003872 582 QGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 582 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
+....+|+-+..-|....+...|..-++..++.. +.|-..|-.|..+|...+.+.-|+-.|++.... -+.|.
T Consensus 361 ------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDs 432 (559)
T KOG1155|consen 361 ------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDS 432 (559)
T ss_pred ------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCch
Confidence 3345567788888888888999999999888876 678888999999999999999999999998886 35578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--hHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPD--VVTF 735 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~ 735 (790)
..|.+|..+|.+.++.++|++.|.....-+ ..+...+..|...|-+.++.++|.+.|++-.+ .|..-+ ....
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 899999999999999999999999988875 33567888889999999999999998887765 233322 2222
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.=|..-+.+.+++++|..+......
T Consensus 511 ~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2355667788899999888777763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=137.25 Aligned_cols=263 Identities=16% Similarity=0.129 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDD-VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (790)
.+...+.+.|++++|+++++...... .+-+...|..+...+...++++.|++.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45777888899999999886544443 2334455555666777788899999999988876533 56667777777 688
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHh
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFG 247 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 247 (790)
+++++|..++.+..+. .++...+..++..+...++++++.++++.+......+.+...|..+...+.
T Consensus 91 ~~~~~A~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccccccccccc-------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 8888888887776553 344455666777777778888888888777654445566777777777777
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 248 CWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMK 327 (790)
Q Consensus 248 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 327 (790)
+.|+.++|.+.+++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 888888888888887776322 46667777777777777777777777766543 4445566677777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 328 IFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
+|++..+.. +.|......+..++...|+.++|.++.++...
T Consensus 236 ~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 236 YLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccc
Confidence 887777642 23666666777777777887777777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-08 Score=99.62 Aligned_cols=508 Identities=12% Similarity=0.088 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEEL-GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
..|..-++.+.++|+.......|+..+.. .+.....+|...+.-....+-++.+..++++.++. .
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-------------~- 168 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-------------A- 168 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-------------C-
Confidence 36666777777888888888888877654 22223346777777777778888888888887652 2
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHhccCChH---HHHHHHHHHHHCCCCCC
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQK-----EFEFDIYGYNICIHAFGCWGDLH---TSLRLFKEMKEKGLVPD 270 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~ 270 (790)
+..-+..+..+++.+++++|.+.+....... ..+.+...|..+-...+++-+.- ....+++.+... .+|
T Consensus 169 -P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 169 -PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred -HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 2336778888888888888888888776521 12334555666665555543322 233344444333 334
Q ss_pred --HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHH
Q 003872 271 --LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ--YNGLIPDTVVYNS 346 (790)
Q Consensus 271 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~~~~~ 346 (790)
...|++|.+.|.+.|.+++|..+|++..+. ..++.-|+.+.++|..-..-.-+..+ + +. +.+-.-+...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~- 320 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLE- 320 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHH-
Confidence 356788888888888888888888887655 44555666677777653322211111 1 11 111111111121
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQD-----------GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV------ 409 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------ 409 (790)
-.+.-|+.+... .-+-++..|..-+.. ..|+..+-...+.+..+. +.|
T Consensus 321 ------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs 385 (835)
T KOG2047|consen 321 ------------LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGS 385 (835)
T ss_pred ------------HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCC
Confidence 122222222221 112344455443333 357777788888887765 222
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHH
Q 003872 410 DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD---LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKA 486 (790)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 486 (790)
-...|..+.+.|-..|+++.|..+|++..+-.++-- ..+|..-...=.+..+++.|.++++.... .|....
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~--- 459 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE--- 459 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh---
Confidence 233477888889999999999999999887644321 23344444444556667777776655443 222100
Q ss_pred HHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhcc
Q 003872 487 DVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSD 566 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (790)
+ ..++... |..
T Consensus 460 -~----------------------------~~yd~~~------------------------------pvQ---------- 470 (835)
T KOG2047|consen 460 -L----------------------------EYYDNSE------------------------------PVQ---------- 470 (835)
T ss_pred -h----------------------------hhhcCCC------------------------------cHH----------
Confidence 0 0000000 000
Q ss_pred CcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003872 567 CHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 646 (790)
.++ ..+..+|..+++.--..|-++....+++.+++..+. ++.........+..+..+++++
T Consensus 471 ------------~rl------hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 471 ------------ARL------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred ------------HHH------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHH
Confidence 000 114556667777777777888888888888776542 3333222233445566677788
Q ss_pred HHHHHHhhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHH
Q 003872 647 GVLNEMGEKFCPTDI-ATYNVVIQGLGK---MGRADLASTILDKLMKQGGGYLDVVMYNTLI--NVLGKAGRFDEANMLF 720 (790)
Q Consensus 647 ~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~ 720 (790)
+++++-+..-..|+. .+|+..+.-+.+ ...++.|..+|+++++. .+|...-+--|+ ..--+.|-...|..++
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~--Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG--CPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 877776665444443 356666555443 23577888888887773 444433222221 1112347777777777
Q ss_pred HHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 721 EQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 721 ~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
++.... +.+. ...||..|.--...=-.....+++++.++.
T Consensus 610 erat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 610 ERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 776542 3333 345665554332221223345555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-09 Score=98.39 Aligned_cols=488 Identities=13% Similarity=0.105 Sum_probs=287.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 003872 91 FRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL 170 (790)
Q Consensus 91 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (790)
+.-+...+++..|+.+++.-...+-.-...+-.-+...+.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566778888888888776654433222344445666778899999999998887643 45667777788888888888
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHH-HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhcc
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNEL-LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCW 249 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 249 (790)
.+|.++... -|+....+.| .....+.++-++...+.+.+.. ...---+|.......
T Consensus 108 ~eA~~~~~k-----------------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 108 IEAKSIAEK-----------------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMR 164 (557)
T ss_pred HHHHHHHhh-----------------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHH
Confidence 888876654 2333344444 4555667777777666666654 223333455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 250 GDLHTSLRLFKEMKEKGLVPDLHTYNSLI-QVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI 328 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (790)
-.+++|+++|...... .|.-...|.-+ -+|.+..-++-+.++++-.... ++.+....|.......+.=+-..|.+-
T Consensus 165 ~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 6788999999988876 45555555544 3455666677777887776655 244455555555444444333445555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 329 FSEMQYNGLIPDTVVYNSLLNGMFKS-----RKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
..++.+++-.. | ..+.-.++. ++-+.|++++-.+.+. -| ..--.|+-.|.+.+++.+|..+.+++.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC
Confidence 55555543211 1 122222332 3456788887776653 23 233456667888999999998887664
Q ss_pred hCCCCCCHhhHHHHHHH--HHHcC-------CHHHHHHHHHHHHhCCCccCHHH-HHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 404 KKGKFVDGITFSIVVLQ--LCREG-------QIEEALRLVEEMEGRGFVVDLVT-ISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 404 ~~~~~~~~~~~~~ll~~--~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
-. ++.-| ++.+ +...| ...-|.+.|.-.-+.+.+-|... -.++..++.-..++|++.
T Consensus 313 Pt----tP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl------- 379 (557)
T KOG3785|consen 313 PT----TPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL------- 379 (557)
T ss_pred CC----ChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH-------
Confidence 32 22222 2222 22222 34556666665555544433221 122333333333333333
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
+|-.-|.+|+.+
T Consensus 380 ---------~YlnSi~sYF~N----------------------------------------------------------- 391 (557)
T KOG3785|consen 380 ---------TYLNSIESYFTN----------------------------------------------------------- 391 (557)
T ss_pred ---------HHHHHHHHHhcC-----------------------------------------------------------
Confidence 333333333322
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH-HHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY-NSM 632 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 632 (790)
+...--.+..+++..|.+.+|.++|-.+....++ |..+| ..|
T Consensus 392 ------------------------------------dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 392 ------------------------------------DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred ------------------------------------cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 1122235788899999999999999887755544 44555 456
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY-NVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
.+.|.+++.++.|..++-.+.. +.+..+. ..+.+-|.+.+.+=-|.+.|+.+.. ..|++..|. |
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe---------G 499 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE---------G 499 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC---------C
Confidence 6788899999988777655443 2334433 4455678888988888888887654 568888875 3
Q ss_pred CHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCC
Q 003872 712 RFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGR 747 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 747 (790)
.-.....+|..+....-.|- ..+..-++..+...++
T Consensus 500 KRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 500 KRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred ccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 33345667777765433333 2333444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-11 Score=109.24 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=154.5
Q ss_pred CCCCCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC---
Q 003872 42 PRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD--- 118 (790)
Q Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~--- 118 (790)
....++|.+.+..+--..+.+|+.|++.|.-+.+.+| .+.++--++-+.+.++|..|.|+++...+..+.-.+.
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHH
Confidence 3445688888888777777889999999988876554 4556666788888889999999999988887643222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
..+.-.|.+-|...|-+++|+++|..+...+ .--......|+..|-...++++|+++-.++...+.... ...
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------~~e 178 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------RVE 178 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------hhH
Confidence 2345567788888999999999999887754 23456788888888888888888888887766542110 000
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLI 278 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 278 (790)
-..-|..|...+....+.+.|..++.+..+. -+..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 0122333444444455555555555555431 11122233334445555555555555555555553333344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 003872 279 QVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
.+|...|+.++....+..+.+.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555555555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=118.23 Aligned_cols=87 Identities=11% Similarity=-0.011 Sum_probs=43.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 003872 352 FKSRKVMEACQLFEKMVQDGVRTSCWTHN--ILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEE 429 (790)
Q Consensus 352 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 429 (790)
.+.|+.+.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+.... ++.....+...|.+.|+++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555443 23322111 1234445555555555555555554322 34445555555555555555
Q ss_pred HHHHHHHHHhCC
Q 003872 430 ALRLVEEMEGRG 441 (790)
Q Consensus 430 a~~~~~~m~~~~ 441 (790)
|..++..+.+.+
T Consensus 206 a~~~l~~l~k~~ 217 (398)
T PRK10747 206 LLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHcC
Confidence 555555555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-09 Score=107.43 Aligned_cols=278 Identities=11% Similarity=0.037 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-..+.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44445555566666777777777777776663 224444555555667777766666666666665 3335667777777
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
.|...|+..+|++.|.+...-
T Consensus 321 YYl~i~k~seARry~SKat~l----------------------------------------------------------- 341 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL----------------------------------------------------------- 341 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc-----------------------------------------------------------
Confidence 777777777777777765431
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLF 614 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 614 (790)
++.-...|-.+...|+-.|..++|...+
T Consensus 342 ----------------------------------------------------D~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 342 ----------------------------------------------------DPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred ----------------------------------------------------CccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 1112334566666777777777776666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 003872 615 EIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG- 693 (790)
Q Consensus 615 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 693 (790)
....+.- +-..--+--+.--|.+.+.+..|.+.|.+.... .+.|+.+.+-+.-...+.+.+.+|..+|+..+..-..
T Consensus 370 ~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 370 FTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 5554331 001111122333456667777777777776665 3445666666655556666777777777666532100
Q ss_pred ---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 694 ---YL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 694 ---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
++ -..+++.|..+|.+.+.+++|+..+++..... +-++.++.++.-.|...|+++.|++.|.+.+ .+.||..+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 01 22346666666777777777777777766642 3356667777777777777777777777766 45666644
Q ss_pred h
Q 003872 770 D 770 (790)
Q Consensus 770 ~ 770 (790)
.
T Consensus 525 ~ 525 (611)
T KOG1173|consen 525 I 525 (611)
T ss_pred H
Confidence 3
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-09 Score=99.93 Aligned_cols=329 Identities=9% Similarity=0.001 Sum_probs=198.7
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH-H
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-EFTH-R 310 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~-~ 310 (790)
..|...+-.....+.+.|..+.|...|......- +-.-..|..|...+ .+.+.+ ...... .+.+ ...- -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHH
Confidence 3344444444455556677777777777666541 12333333333222 122222 222111 1211 1111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH
Q 003872 311 IIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGV--RTSCWTHNILIDGLFR 388 (790)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~li~~~~~ 388 (790)
-+..++-...+.+++..-.......|++-+...-+....+.....++++|+.+|+++.++.. --|..+|+.++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 22344555556677777777777766655554444445555666777888888887777631 1245556555443322
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHH
Q 003872 389 NGRAE-AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTER 467 (790)
Q Consensus 389 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 467 (790)
...+. -|..++ .+ ... -+.|...+.+-|.-.++.++|..+|+..++.+.. ....|+.+..-|....+...|..
T Consensus 312 ~skLs~LA~~v~-~i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NI--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH-Hh--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 111111 11 112 3445556666677777788888888887776443 45667777777777777777777
Q ss_pred HHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCC
Q 003872 468 LMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNS 547 (790)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (790)
.++...+
T Consensus 386 sYRrAvd------------------------------------------------------------------------- 392 (559)
T KOG1155|consen 386 SYRRAVD------------------------------------------------------------------------- 392 (559)
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 7777665
Q ss_pred CCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh
Q 003872 548 DEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY 627 (790)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 627 (790)
+.|.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +-|..
T Consensus 393 --------------------------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsR 433 (559)
T KOG1155|consen 393 --------------------------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSR 433 (559)
T ss_pred --------------------------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchH
Confidence 234466677778888888888888888888877664 66788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
.|.+|...|.+.++.++|++-|+.....|- .+...+..|...|-+.++.++|.+.+++.++
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888888888888888877642 2457788888888888888888888877665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-10 Score=119.27 Aligned_cols=135 Identities=14% Similarity=0.044 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIAT-YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
+...+..+...+...|+.++|..++++..+......... ...........++.+.+.+.++...+..+-.|+.....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 566666677777777777777777777776532211111 1111122234466777777777777664233322556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 704 INVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
...|.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888888888888854443356777777788888888888888888887753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-10 Score=118.15 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=113.9
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHH
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDL-------HTYNSLIQVL 281 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~ 281 (790)
.+...|+++.|...++.+.+. -|-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444431 1223444455555555555555555555555554433211 1222233333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence 3334445555555554332 1345555566666666666666666666666553 3333211 222333446666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++-.
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666543 223444556666666666666666666666654 4556666666666666666666666666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-10 Score=108.74 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=122.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
++.++++|-.-...+.-.+++++|..=|++.++.. +-+...|-.+.-+..+.+.++++...|++..++ ++.-+.+|+.
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 34566777777777777788888888888888765 456666777766777788888899999988877 5667788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-------VV--MYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFN 736 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 736 (790)
....+...++++.|.+.|+..++.. |+ .. .--+++- +-..+++..|.+++++..+. .| ....|.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE---~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~ 541 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELE---PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYE 541 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhc---cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHH
Confidence 8888888899999999998887753 32 11 1112221 22348888899988888874 33 356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|...-...|+.++|+++|++-.
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888899999999888754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=132.11 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=67.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 676 (790)
+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..+++.++.. |.|....+.++..+...|+
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 333444444444444444433221 13344455555555555666666666666555542 2234455555555555566
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
.+++.++++...... +.|...|..+..+|...|+.++|..+|++..... +.|+.+...+..++...|+.++|.++..
T Consensus 196 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 196 YDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 555555555554442 2333445555555556666666666666555431 2245555555566666666666655555
Q ss_pred HH
Q 003872 757 MM 758 (790)
Q Consensus 757 ~m 758 (790)
+.
T Consensus 273 ~~ 274 (280)
T PF13429_consen 273 QA 274 (280)
T ss_dssp --
T ss_pred cc
Confidence 44
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-10 Score=116.46 Aligned_cols=287 Identities=12% Similarity=0.005 Sum_probs=162.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc--hHHHHHH
Q 003872 132 SGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV--ACNELLV 208 (790)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~ 208 (790)
.|+++.|.+.+.+..+.. |++. .+-....++...|+.+.|...+.+..+. .|+.. ..-....
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------AGNDNILVEIARTR 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------CCcCchHHHHHHHH
Confidence 456666666665554432 2222 2233344455556666666666655442 22222 2222345
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHH---Hhc
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN-SLIQVL---CVV 284 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~ 284 (790)
.+...|+++.|.+.++.+.+. -|-+...+..+...+...|+++.|.+++..+.+.++. +...+. .-..++ ...
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666652 1234456666777777777777777777777766543 222221 111111 222
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHH
Q 003872 285 GKVKDALIVWEELKGSG---HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVV---YNSLLNGMFKSRKVM 358 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~ 358 (790)
+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 22222233333333321 12366777777777888888888888888877652 33331 111122223446677
Q ss_pred HHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 359 EACQLFEKMVQDGVRTSC--WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEE 436 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (790)
.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776652 2233 455577778888888888888888544443456777777888888888888888888887
Q ss_pred HHh
Q 003872 437 MEG 439 (790)
Q Consensus 437 m~~ 439 (790)
...
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=101.30 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=147.0
Q ss_pred cCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCH--HHHHHHHHHHHhcCChhHH
Q 003872 97 AGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELG-TSLSP--NVYDSVLVSLVRKKQLGLA 173 (790)
Q Consensus 97 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a 173 (790)
+.+.++|.++|-+|.+.+. -+.++..+|...|.+.|..++|+.+.+.+.++. ..... .+...|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577888888888877653 356677777888888888888888888777651 11111 1233444445555555555
Q ss_pred HHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChH
Q 003872 174 MSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLH 253 (790)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 253 (790)
..+|..+.+.+ ..-... ...|+..|-+..+|+
T Consensus 127 E~~f~~L~de~------------efa~~A------------------------------------lqqLl~IYQ~treW~ 158 (389)
T COG2956 127 EDIFNQLVDEG------------EFAEGA------------------------------------LQQLLNIYQATREWE 158 (389)
T ss_pred HHHHHHHhcch------------hhhHHH------------------------------------HHHHHHHHHHhhHHH
Confidence 55555554421 111223 334444455555555
Q ss_pred HHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 254 TSLRLFKEMKEKGLVPD----LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 254 ~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 329 (790)
+|+++-+++.+.+..+. ...|.-+...+....+++.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.+
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHH
Confidence 55555554444433222 1234444445555555555555555555442 222222223334555556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003872 330 SEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV 409 (790)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (790)
+...+.+..--..+...|..+|...|+.++....+..+.+.. +....-..+-.......-.+.|..++.+-... .|
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~P 313 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KP 313 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CC
Confidence 555554332223344555555666666666666555555542 22222233333333333344444444333333 35
Q ss_pred CHhhHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 003872 410 DGITFSIVVLQLCR---EGQIEEALRLVEEMEGR 440 (790)
Q Consensus 410 ~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~ 440 (790)
+...+..++..-.. .|...+-...++.|...
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 55555555554432 23344555555555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-09 Score=102.85 Aligned_cols=287 Identities=14% Similarity=0.048 Sum_probs=179.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 249 WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI 328 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (790)
.|++..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+.--.++....-+..+.....|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47777777777776666533 33445555566667777777777777777653345556666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 329 FSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSC-------WTHNILIDGLFRNGRAEAAYTLFCD 401 (790)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 401 (790)
++++.+.+.. +........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766433 5556677777777778887777777777777654333 3455555555555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccch
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDV 481 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (790)
.... ..-++..-..++.-+.+.|+.++|.++.++..+++..|+.. ..-.+.+.++...-.+..++-.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~------ 323 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ------ 323 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh------
Confidence 4433 22244555556666677777777777777777666555411 112233344444333333332221
Q ss_pred HhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHH
Q 003872 482 LKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLAD 561 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (790)
T Consensus 324 -------------------------------------------------------------------------------- 323 (400)
T COG3071 324 -------------------------------------------------------------------------------- 323 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003872 562 QVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY 641 (790)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 641 (790)
.+.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+
T Consensus 324 -------------------------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 324 -------------------------HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -------------------------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 1234566777777777777777777777766655 5777777777777777777
Q ss_pred HHHHHHHHHHHhhc
Q 003872 642 FNQAWGVLNEMGEK 655 (790)
Q Consensus 642 ~~~A~~~~~~m~~~ 655 (790)
..+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-09 Score=102.90 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
+..-.+++.-+..+|+.++|.++.++..+.+..|.. ...-.+.+.++.+.-.+..++..+..+. ++..+.+|..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHH
Confidence 344444555555555555555555555555444431 1112234445555555555555544322 2244555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.|.+.+.|.+|...|+...+ ..|+..+|+-+.+++.+.|+.++|.+..++-.
T Consensus 337 L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55556666666666654444 35555556666666666666666555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-09 Score=97.94 Aligned_cols=455 Identities=13% Similarity=0.130 Sum_probs=278.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (790)
+.-+....++..|+.+++--...+-....++-.-+..++.+.|++++|..++.-+... ..++...+-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------------~~~~~el~vn 96 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------------DDAPAELGVN 96 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------------CCCCcccchh
Confidence 4455567888888888876655443333334444556778889999999998877664 4555566666
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG 285 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 285 (790)
|.-++.-.|.+.+|..+.....+ +.-.-..+.+...+.|+-++...+.+.+.+. ..---+|.......-
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHH
Confidence 77777778888888887655443 4444455667777888888888877776543 122333444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIII-QGCCKSYRMDDAMKIFSEMQYNGLIPDTV-VYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~l 363 (790)
.+.+|.+++..+... .|.....|.-+ -+|.+..-++-+.++++-..+. .||.. ..|.......+.=.-..|.+-
T Consensus 166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 678999999998865 45555555444 4566777788888888877765 34443 344444333443333344444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRN-----GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
.+++..++-.. | -.+.-+++. .+-+.|++++--+.+. . +..--.|+--|.++++.++|..+.+++.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC
Confidence 55555443111 1 122333332 4557777777666554 2 2233345566778899999988877654
Q ss_pred hCCCccCHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCC
Q 003872 439 GRGFVVDLVTISSLLIGFHKYGR-------WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGD 511 (790)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 511 (790)
-. .|-......++ ++..|+ ...|.+.|+..-+++..-|.+
T Consensus 313 Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----------------------------- 359 (557)
T KOG3785|consen 313 PT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTI----------------------------- 359 (557)
T ss_pred CC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-----------------------------
Confidence 22 22223333332 333333 233444443333322211110
Q ss_pred hHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchH
Q 003872 512 LSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDI 591 (790)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (790)
T Consensus 360 -------------------------------------------------------------------------------- 359 (557)
T KOG3785|consen 360 -------------------------------------------------------------------------------- 359 (557)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
.--.++.+.+--..++++.+..++.+...-+..|...|| +..+++..|.+.+|.++|-.+....++.+..-...|..+|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 011234444445567888888888887776666666666 6788999999999999999887766664443345566788
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMY-NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
.+.|.++.|..++-++ . -+.+..+. ..+..-|.+++.+=-|.+.|+.+... .|++..|.
T Consensus 439 i~nkkP~lAW~~~lk~---~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKT---N-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HhcCCchHHHHHHHhc---C-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 9999999997776443 2 22233333 34456677888888888888888764 56655553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-08 Score=101.62 Aligned_cols=287 Identities=13% Similarity=0.062 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 003872 337 LIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSI 416 (790)
Q Consensus 337 ~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (790)
..-+......-..-+....++.+..++.+...+.. ++....+..-|.++...|+...-..+=.++.+..+. .+.+|-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 34466666677777888899999999999998864 566677777788999999998888888888887433 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccc
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRK 496 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 496 (790)
+.--|...|+.++|.++|.+....... =...|-.+...|+-.|..|.|...+...-+--
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-------------------- 376 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-------------------- 376 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------------------
Confidence 888888889999999999987654222 23567888889999999999988887655410
Q ss_pred cccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHH
Q 003872 497 SKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLA 576 (790)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 576 (790)
T Consensus 377 -------------------------------------------------------------------------------- 376 (611)
T KOG1173|consen 377 -------------------------------------------------------------------------------- 376 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc-
Q 003872 577 RGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK- 655 (790)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 655 (790)
++..-|.. -+..-|.+.+.++.|.++|....... +.|+...+-+.-.....+.+.+|..+|+..+..
T Consensus 377 ---------~G~hlP~L--Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 377 ---------PGCHLPSL--YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred ---------cCCcchHH--HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 00011222 24556778899999999999887665 667888888887788889999999999987622
Q ss_pred -CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003872 656 -FCP----TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 656 -~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 730 (790)
.+. --..+++.|..+|.+.+.+++|+..+++.+.. .+.|..++.++.-.|...|+++.|...|++... +.|
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p 520 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKP 520 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCC
Confidence 111 12346888999999999999999999999987 466888999999999999999999999999886 688
Q ss_pred ChHHHHHHHHHH
Q 003872 731 DVVTFNTLIEVN 742 (790)
Q Consensus 731 ~~~~~~~l~~~~ 742 (790)
+..+...++..+
T Consensus 521 ~n~~~~~lL~~a 532 (611)
T KOG1173|consen 521 DNIFISELLKLA 532 (611)
T ss_pred ccHHHHHHHHHH
Confidence 876666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=117.80 Aligned_cols=288 Identities=14% Similarity=0.020 Sum_probs=170.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
+..+|...|..+... ..-+..+...+.++|...+++++|..+|+.+.+.... ...+...|.+.+-.+.+.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~---------rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY---------RVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cccchhHHHHHHHHHHhh
Confidence 445666666664443 2234456666667777777777777777766554321 223445555554433221
Q ss_pred cchHHHHHHH-HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 003872 214 DRRSEFKQVF-ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP-DLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 214 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
- +..++ +.+.+ --+-...+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+.+-+.....+|.|.
T Consensus 404 v----~Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 404 V----ALSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred H----HHHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHH
Confidence 1 11111 11111 11224567777777777777777777777777665 33 5667777767777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
..|+...... +.+-..|-.+.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|++++++.....
T Consensus 476 ~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 7777766331 122234444555677777777777777777665322 44555566666667777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 003872 372 VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443 (790)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 443 (790)
+.|+..---....+...+++++|+..++++++.-.. +...|..+...|.+.|+.+.|+.-|.-+.....+
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 224444444555666667777777777777665222 4455666667777777777777777776665433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-09 Score=102.44 Aligned_cols=420 Identities=12% Similarity=-0.007 Sum_probs=251.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC-cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hh
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG-CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IY 237 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 237 (790)
..+-|.+.|.+++|+..+.+.++ ..|+ +.-|.....+|...|+++++.+.-....+ +.|+ +.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~-------------l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~K 184 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE-------------LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVK 184 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh-------------cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHH
Confidence 34567889999999999999998 4555 77888899999999999999888887776 5566 45
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG-SG--HEPNEFTHRIIIQ 314 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g--~~~~~~~~~~li~ 314 (790)
.+..-.+++-..|++++|+.=+....-.|-.-+..+--.+=+.+- ..|....++-.+ .+ +-|+.....+...
T Consensus 185 Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 185 ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 666667777788888877643222221111112111111111111 122222222222 22 2334333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCC-CC-----CCHHH----HHHHH
Q 003872 315 GCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK-SRKVMEACQLFEKMVQDG-VR-----TSCWT----HNILI 383 (790)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~l~~~~~~~~-~~-----~~~~~----~~~li 383 (790)
.+...- ...+...+-..|...-..+=..+.. ...+..|.+.+.+-.... .. .|... -..++
T Consensus 260 sF~~~~--------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHADP--------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hccccc--------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 321100 0000000000011111111111111 012222222222211100 00 11111 11111
Q ss_pred H--HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 384 D--GLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 384 ~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
. -+.-.|+.-.|..-|+........++. .|-.+...|....+.++....|.+..+.... ++.+|..-.+.+.-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 1 123457888888888888877554333 2666777888889999999999998877544 66677777777777788
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
++.|..-|++...-
T Consensus 410 ~e~A~aDF~Kai~L------------------------------------------------------------------ 423 (606)
T KOG0547|consen 410 YEEAIADFQKAISL------------------------------------------------------------------ 423 (606)
T ss_pred HHHHHHHHHHHhhc------------------------------------------------------------------
Confidence 88888888877651
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
.|.+...|..+.-+.-+.++++++...|++..+.
T Consensus 424 ---------------------------------------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk- 457 (606)
T KOG0547|consen 424 ---------------------------------------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK- 457 (606)
T ss_pred ---------------------------------------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 2334444555555566778999999999998876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003872 622 VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-----DIA--TYNVVIQGLGKMGRADLASTILDKLMKQGGGY 694 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 694 (790)
++..+..|+-....+...+++++|.+.|+..++....- ++. +.-+++-.-. .+++..|..++.++.+.. +
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--p 534 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--P 534 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--c
Confidence 36677889999999999999999999999988753221 111 2222222222 389999999999998853 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
-....|.+|...-.+.|++++|+.+|++...
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3556899999999999999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-10 Score=115.52 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN---SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
|+-+..-+.....+|.|...|+..+ ..++..|+ -|...|.+.++++.|+-.|+++.+-. +-+.+....+...
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRI 532 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHH
Confidence 3333344444445555555555444 22333333 23344555555555555555555542 2234444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHH
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 749 (790)
+.+.|+.++|+++++++.... +.|+..--..+..+...+++++|++.++++.+. .|+ ...|..+...|.+.|+.+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 555555555555555555443 112222222333444455555555555555552 332 444555555555555555
Q ss_pred HHHHHHHHHHh
Q 003872 750 EAHYFLKMMLD 760 (790)
Q Consensus 750 ~A~~~~~~m~~ 760 (790)
.|+.-|--+.+
T Consensus 609 ~Al~~f~~A~~ 619 (638)
T KOG1126|consen 609 LALLHFSWALD 619 (638)
T ss_pred HHHHhhHHHhc
Confidence 55555555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-07 Score=90.86 Aligned_cols=190 Identities=9% Similarity=0.004 Sum_probs=85.9
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 290 (790)
...|+-++|....+.-.. +-.-+.+.|..+.-.+....++++|++.|......+.. |...+.-+.-.-++.++++..
T Consensus 52 ~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344444444444443332 11223444555555555555555555555555544322 344444444444444555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG-LIPDTVVYNSLL------NGMFKSRKVMEACQL 363 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li------~~~~~~~~~~~a~~l 363 (790)
......+.+.. +.....|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 55544444431 2223445555555555566666666665555432 123333332222 122344555555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4433221 1101111122234455566666666666666655
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=83.78 Aligned_cols=50 Identities=52% Similarity=0.730 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 744 (790)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-06 Score=86.57 Aligned_cols=478 Identities=12% Similarity=0.071 Sum_probs=265.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc
Q 003872 122 FKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV 201 (790)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (790)
|..++..| ..+++...+.+.+.+.+. .+-..++.....-.+...|+.++|....+..++. ...+.+
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~------------d~~S~v 76 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN------------DLKSHV 76 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc------------Ccccch
Confidence 33444443 446666666666666663 3334444444444556667777777666655543 455566
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
+|..+.-.+....++++|+..|...... -+-|...|.-+.-.-.+.|+++........+.+.... ....|..+..++
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQ 153 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHH
Confidence 6777766677777777777777777641 2224455555555556667777777777777665211 334556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 003872 282 CVVGKVKDALIVWEELKGSG-HEPNEFTHRIII------QGCCKSYRMDDAMKIFSEMQYNGLIPDTVVY-NSLLNGMFK 353 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~ 353 (790)
.-.|+...|..++++..+.. -.|+...+.... ......|..+.|.+.+..-... ..|...+ ..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 67788888888888776653 235555444332 2334567777777777655432 1233332 233455678
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHhCCCCCCHhhHHHH-HHHHHHcCCHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF-RNGRAEAAY-TLFCDLKKKGKFVDGITFSIV-VLQLCREGQIEEA 430 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a 430 (790)
.+++++|..++..+...+ ||..-|...+..+. +-.+.-++. .+|....+.-.. ...-..+ +....-..-.+..
T Consensus 232 l~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHH
Confidence 888999999999888874 66666665554443 333333333 555555443111 1110001 1111112223445
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCC
Q 003872 431 LRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKG 510 (790)
Q Consensus 431 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 510 (790)
-.++..+.++|+++-... +...|-.....+ +++++.- .|.+.-.
T Consensus 308 dkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~----~le~Lvt---------------~y~~~L~-------------- 351 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKD---LRSLYKDPEKVA----FLEKLVT---------------SYQHSLS-------------- 351 (700)
T ss_pred HHHHHHHhhcCCCchhhh---hHHHHhchhHhH----HHHHHHH---------------HHHhhcc--------------
Confidence 566777788887654333 333332222111 2222211 0100000
Q ss_pred ChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcch
Q 003872 511 DLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFD 590 (790)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (790)
... +. . ........++.
T Consensus 352 ----------~~~------------~f------------------------------------~-----~~D~~~~E~Pt 368 (700)
T KOG1156|consen 352 ----------GTG------------MF------------------------------------N-----FLDDGKQEPPT 368 (700)
T ss_pred ----------ccc------------CC------------------------------------C-----cccccccCCch
Confidence 000 00 0 00000011333
Q ss_pred HHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 591 IDMVN--TFLSIFLAKGKLNLACKLFEIFTDMGVHPVN-YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 591 ~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+|. -++.-|-..|+++.|...++..+.. .|+. ..|..-.+.+..+|++++|..++++..+... +|..+-.--
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHH
Confidence 33433 4667788899999999999988865 3443 3455555788899999999999999888643 455544455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCHH----HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGG-GYLDVV----MYNTL--INVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~----~~~~l--i~~~~~~g~~~~A~~~~~~m~ 724 (790)
..-..++.+.++|.++.....+.+. ...|.. .|-.+ ..+|.+.|++..|++-|....
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5566778889999988887666551 111111 22222 345666777777766555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-06 Score=87.01 Aligned_cols=436 Identities=16% Similarity=0.074 Sum_probs=240.9
Q ss_pred CCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 003872 232 FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE-FTHR 310 (790)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~ 310 (790)
+..+...|..+.-+....|+++.+.+.|++.... ..-....|..+-..|...|.-..|..+++.-....-.|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777777777888888888888888887654 2335667777777888888888888888776544222433 3333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 003872 311 IIIQGCC-KSYRMDDAMKIFSEMQYN--GL--IPDTVVYNSLLNGMFKS-----------RKVMEACQLFEKMVQDGVRT 374 (790)
Q Consensus 311 ~li~~~~-~~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------~~~~~a~~l~~~~~~~~~~~ 374 (790)
..-..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 2233333 345666666666655541 11 11222333333333211 12345677777776654 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
|......+.--|+..++++.|++..++..+.+..-+...|..|.-.+...+++.+|+.+.+..... ..-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 333333344456667888888888888888765667788888888888888888888888776544 1111111111122
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
.-...++.+++.....++..- |... |+-.-.+++....-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--------we~~------------------~~~q~~~~~g~~~~--------------- 594 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--------WEAE------------------YGVQQTLDEGKLLR--------------- 594 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--------HHhh------------------hhHhhhhhhhhhhh---------------
Confidence 222356666666665555430 0000 00000000000000
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFL-AKGKLNLACKL 613 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~ 613 (790)
+.-+..... +-....+..+..+..... +.........
T Consensus 595 ----------------------------------------lk~~l~la~-~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 595 ----------------------------------------LKAGLHLAL-SQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred ----------------------------------------hhcccccCc-ccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 000000000 000000111111111111 0000000000
Q ss_pred HHHHHhCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 614 FEIFTDMGVHPVN--------YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 614 ~~~~~~~g~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
+...-+.|.. ..|......+.+.+..++|..-+.+..+. .+.....|.-....+...|..++|.+.|.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111111211 23444555667778888887777776665 23345566666666777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 686 KLMKQGGGYLDVVMYNTLINVLGKAGRFDEANM--LFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 686 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
....-. +-++.+..++..++...|+..-|.. ++..+.+.+ +-+...|-.+...+-+.|+.+.|.+.|....+
T Consensus 709 ~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 877743 2245567788888888888777777 888888754 23678888888888999999988888887764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-09 Score=111.99 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++..+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|+..++++.+...+.+...+..+.
T Consensus 370 ~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 370 ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 355566677777888888888888888887764 2222333344445666788888888888877653233455566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHhccCC
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.++...|+.++|...++++.... +.+....+.+...|+..| ++|...++.+.+ ..-.|...-+..+ .+.-.|+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~ 522 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGE 522 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhh
Confidence 77888888888888888765542 223344455555666666 477777777665 2223333333333 3344455
Q ss_pred HHHHHHHHHHHHhC
Q 003872 748 LKEAHYFLKMMLDS 761 (790)
Q Consensus 748 ~~~A~~~~~~m~~~ 761 (790)
-+.+..+ +++.+.
T Consensus 523 ~~~~~~~-~~~~~~ 535 (553)
T PRK12370 523 AIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHH-HHhhcc
Confidence 5555555 777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-09 Score=99.43 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCCHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PTDIATYNVVI 668 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li 668 (790)
+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...+++..+... +.....+..+.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 34556677788888899999999998887765 44567777888888999999999999999886522 22345667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..+...|++++|...+++..... +.+...+..+...+...|++++|...+++.... ...+...+..++..+...|+.
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH
Confidence 88899999999999999988764 345667888888899999999999999998875 344567777888888899999
Q ss_pred HHHHHHHHHHHh
Q 003872 749 KEAHYFLKMMLD 760 (790)
Q Consensus 749 ~~A~~~~~~m~~ 760 (790)
++|..+.+.+.+
T Consensus 220 ~~a~~~~~~~~~ 231 (234)
T TIGR02521 220 AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999998888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-06 Score=87.34 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
..+.+|..+..+-.+.|.+.+|.+-|=+ ..|+..|...++...+.|.+++-...+....++.-.|.+. ..||
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 3677899999999999999988766533 3466788899999999999999999988888776666554 4788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
-+|++.+++.+-++++ ..||......+.+-|...|.++.|.-+|... ..|..|...+.+.|.+
T Consensus 1174 ~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHH
Confidence 8899999888766655 3478888888888888888888887777643 3467777788888888
Q ss_pred HHHHHHHHHHHhCCCCCCccchhHHHHHHH
Q 003872 749 KEAHYFLKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
..|.....+.- +..||....+.|-
T Consensus 1237 Q~AVD~aRKAn------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1237 QGAVDAARKAN------STKTWKEVCFACV 1260 (1666)
T ss_pred HHHHHHhhhcc------chhHHHHHHHHHh
Confidence 77766555443 5556666555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-06 Score=91.31 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=186.3
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHh--
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLI-QVLCV-- 283 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-- 283 (790)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.+.+ |+...|-..+ .+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3556788999999999987653 355456677888899999999999999999999984 5655555444 44422
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 284 ---VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM-DDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVME 359 (790)
Q Consensus 284 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 359 (790)
..+.+...++++++... -|.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 23578888999988765 34433333332222222233 34556677777888653 45555555665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 003872 360 ACQLFEKMVQD----G----------VRTSC--WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR 423 (790)
Q Consensus 360 a~~l~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 423 (790)
..+++...... + -.|+. +++..+...|-..|+++.|++++++..+.... .+..|..-.+.+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 56666655432 1 13444 45567778888999999999999999988432 36678888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 424 EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
.|++++|...++........ |...-+..+..+.+.|++++|..++......+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999988555 778888888999999999999999988766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-07 Score=91.82 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|....... +.++.+..++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445556666667777765555555443 4455666666667777788888888887777652 2245566777777777
Q ss_pred cCCHHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 674 MGRADLAST--ILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 674 ~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.|+...|.. ++.++.+.+ +-+...|-.+...+-+.|+.++|..-|....+
T Consensus 731 ~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 777776666 777777764 44667777777777788888888888777665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=98.58 Aligned_cols=197 Identities=14% Similarity=0.026 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC 200 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (790)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++.++. .+.+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~~~~~ 99 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------------NPNNG 99 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCH
Confidence 34444444444444444444444444332 122334444444444444444444444444432 11122
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
..+..+...+...|++++|.+.++........+.....+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHH
Confidence 23333334444444444444444444331111112233344444445555555555555555443211 23344444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555554443 1223334444444444455555555444444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-06 Score=86.16 Aligned_cols=319 Identities=17% Similarity=0.151 Sum_probs=185.6
Q ss_pred HHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-C-------CCCCHHHHHHHHHHHH
Q 003872 94 VCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL-G-------TSLSPNVYDSVLVSLV 165 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~ll~~~~ 165 (790)
|..-|+.+.|.+-.+.+. +..+|..+.+.|.+.++.+-|.-.+..|... | ...+...-........
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 344567777766665443 3447788888888888877777666655432 1 1111123333444456
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
..|.+++|+.++++..+ |..|=..|-..|.+++|.++-+.-.. +.. ..||..-...
T Consensus 812 eLgMlEeA~~lYr~ckR--------------------~DLlNKlyQs~g~w~eA~eiAE~~DR---iHL-r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR--------------------YDLLNKLYQSQGMWSEAFEIAETKDR---IHL-RNTYYNYAKY 867 (1416)
T ss_pred HHhhHHHHHHHHHHHHH--------------------HHHHHHHHHhcccHHHHHHHHhhccc---eeh-hhhHHHHHHH
Confidence 67888888888877654 33344566777888888777654321 211 2344444555
Q ss_pred HhccCChHHHHHHHHHHH----------HCCC---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003872 246 FGCWGDLHTSLRLFKEMK----------EKGL---------VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
+-..+|.+.|++.|++.. ...+ ..|...|.-....+-..|+++.|+.+|....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------- 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-------- 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------
Confidence 555677777777776532 1100 1122333333334445667777777766654
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
-|-.+++..|-.|+.++|-++-++- -|......|.+.|...|++.+|...|.+... +...|+.|
T Consensus 940 -D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlc 1003 (1416)
T KOG3617|consen 940 -DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLC 1003 (1416)
T ss_pred -hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 2556677777778888887766543 2566677788888888888888888876542 22233322
Q ss_pred HHc---------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH--------HHhC--C
Q 003872 387 FRN---------------GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEE--------MEGR--G 441 (790)
Q Consensus 387 ~~~---------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------m~~~--~ 441 (790)
-.. .+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++--+ ++.. .
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 221 1222233333332 11 123344556677777777665322 1222 3
Q ss_pred CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 442 FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
...|+...+.-...|....++++|..++-..++
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344677777777888888888988888776655
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-11 Score=81.48 Aligned_cols=49 Identities=37% Similarity=0.606 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666666666666666665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=109.12 Aligned_cols=251 Identities=10% Similarity=-0.007 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLF---------RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQ 426 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 426 (790)
+.++|..+|++..+.. +-+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 4577888888887753 223445555544443 224478899999988887544 66777778788888999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCC
Q 003872 427 IEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMF 506 (790)
Q Consensus 427 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 506 (790)
+++|...++++.+.+.. +...+..+...+...|++++|...+++..+.+.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P----------------------------- 403 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP----------------------------- 403 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------------------------
Confidence 99999999999887533 567788888889999999999999998877321
Q ss_pred CCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCC
Q 003872 507 PYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGM 586 (790)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (790)
T Consensus 404 -------------------------------------------------------------------------------- 403 (553)
T PRK12370 404 -------------------------------------------------------------------------------- 403 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.++..+..++..+...|++++|...+++..+...+-++..+..+..++...|++++|...+.++... .+.+....+.
T Consensus 404 --~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~ 480 (553)
T PRK12370 404 --TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNL 480 (553)
T ss_pred --CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHH
Confidence 1222222334445567889999999988876542224555777788888999999999999887654 2223444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
+...|...| +.|...++.+.+.....+....+..+ .|.-.|+.+.+..+ +++.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhcc
Confidence 666677777 47888777777654334444444333 45556776666665 777764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-09 Score=96.40 Aligned_cols=233 Identities=11% Similarity=-0.013 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
-+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..+.+.|+.++.+-.+. ++-++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367788999999999999999988876 567778888999999999999999999988775 23344444556777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHH
Q 003872 389 NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERL 468 (790)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 468 (790)
.++.++|.++++...+... .++.....+...|.-.++++.|+.+++++++.|+. ++..|..+.-+|.-.+++|.+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999888743 36667777777888889999999999999999988 888999999999999999988888
Q ss_pred HHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCC
Q 003872 469 MKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSD 548 (790)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (790)
|.+...--..|
T Consensus 381 f~RAlstat~~--------------------------------------------------------------------- 391 (478)
T KOG1129|consen 381 FQRALSTATQP--------------------------------------------------------------------- 391 (478)
T ss_pred HHHHHhhccCc---------------------------------------------------------------------
Confidence 87766522111
Q ss_pred CCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhh
Q 003872 549 EWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYT 628 (790)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 628 (790)
..-.++|-.+.......|++..|.+-|+...... ..+...
T Consensus 392 ---------------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ea 431 (478)
T KOG1129|consen 392 ---------------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEA 431 (478)
T ss_pred ---------------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHH
Confidence 1134556666666677788888888888777665 445567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
++.|.-.-.+.|+.++|..++....+.
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777776677778888888887776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-08 Score=93.33 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=186.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318 (790)
Q Consensus 239 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 318 (790)
-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-.+|.+..++..|+.++.+-.+. ++-++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356888899999999999999888877 677778888889999999999999999888765 24444444566677888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003872 319 SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 398 (790)
.++.++|.++++...+.. +.++....++...|.-.++.+.|+..|+.+...|+. +...|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999988764 336666777777888889999999999999999864 778888888888889999999999
Q ss_pred HHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 399 FCDLKKKGKFVDG--ITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 399 ~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
|++....--.|+. ..|..+-......|++..|.+.|+-.+..... +...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9888776444443 44666777777889999999999988877444 6778888888889999999999999877653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-06 Score=86.30 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFE--------IFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTD 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~ 660 (790)
..+.-..+......|+++.|++++. .+.+.+..|-. ..++...+.+.++-+.|..++.+.++. .-.+.
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 3445566777788899999999888 55555555544 445666777777777677776666432 01112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 661 IA----TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 661 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
.. ++.-+...-.+.|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+-..+.
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 22 3333333445679999999999999987 468889999999999887 6888888765543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-06 Score=88.64 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
.|.+-..-+-+.|++.+|.+++-.+. .|+ .-|.+|-+.|..+..+++.++-.-. .-..|.-.+..-|.
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELE 893 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHH
Confidence 34444455555666666666553322 343 2355667777777666665543211 11234555666677
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAH 752 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 752 (790)
..|++..|..-|-+..+ |.+-++.|-.++.|++|-++-+ ..|- .|..-...++.+-.--| +-|.
T Consensus 894 ~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak---tegg-~n~~k~v~flwaksigg--daav 957 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK---TEGG-ANAEKHVAFLWAKSIGG--DAAV 957 (1636)
T ss_pred hccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh---cccc-ccHHHHHHHHHHHhhCc--HHHH
Confidence 77888888777644321 4455666777777777766643 2222 24443444444444444 4567
Q ss_pred HHHHH
Q 003872 753 YFLKM 757 (790)
Q Consensus 753 ~~~~~ 757 (790)
+++++
T Consensus 958 kllnk 962 (1636)
T KOG3616|consen 958 KLLNK 962 (1636)
T ss_pred HHHHh
Confidence 77765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=98.17 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C-CCC-
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEK---FCPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQG----G-GYL- 695 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~p- 695 (790)
++.+...+...+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.+++++++... + ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344445556666666666666654332 11222 3477888888888888888888888877653 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH---hCCCCCC
Q 003872 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGI-NPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML---DSGCTPN 766 (790)
Q Consensus 696 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~ 766 (790)
....++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|..+|.+.|+++.|+++.+... +.+..+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 245677888889889999999998887653 222 222 5788999999999999999999988875 3444444
Q ss_pred ccc
Q 003872 767 HVT 769 (790)
Q Consensus 767 ~~t 769 (790)
..+
T Consensus 488 ~~~ 490 (508)
T KOG1840|consen 488 SPT 490 (508)
T ss_pred Ccc
Confidence 443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-07 Score=82.53 Aligned_cols=209 Identities=14% Similarity=-0.031 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC 200 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (790)
+...|.-.|...|++..|..-+++.++.+. .+..++..+...|-+.|+.+.|.+.|++.++. .+.+-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------------~p~~G 103 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL------------APNNG 103 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------------CCCcc
Confidence 455666777777888888888887777652 24456777777777788888888888777765 45556
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
.+.|.....+|..|++++|...|++.........-..+|..+.-+..+.|+++.|...|++..+.... ...+...+...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~ 182 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARL 182 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHH
Confidence 67777777788888888888888887775445555678888888888899999999999988877433 45667778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
..+.|++..|...++.....+. ++..+.-..|+.-...|+-+.+.++=.++.+. .|...-|..
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 8889999999999888887774 88888888888888888888888777776654 455555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-07 Score=93.92 Aligned_cols=261 Identities=14% Similarity=0.071 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK- 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 167 (790)
-...++...|++++|++.++.-... +.............+.+.|+.++|..+|..+...++ .+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3456778889999999999775544 343456667788888999999999999999999872 2444455555555222
Q ss_pred ----CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH-HHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 168 ----KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS-EFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 168 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+.+....+++++... -|.......+.-.+.....+. .+...+..+.. .|+|+ +++.|
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~-------------yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~l 149 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK-------------YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNL 149 (517)
T ss_pred ccccccHHHHHHHHHHHHHh-------------CccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHH
Confidence 2456666777766553 222222222222222211222 22333333443 44432 33344
Q ss_pred HHHHhccCChHHHHHHHHHHHHC----C----------CCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEK----G----------LVPDL--HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN- 305 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 305 (790)
-..|......+-..+++...... + -.|.. .++..+...|-..|++++|++.+++..+. .|+
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 44444333444444444443321 1 01222 12333445555566666666666666555 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 306 EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
+..|..-.+.+-+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++......+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 445555555666666666666666666554332 44444455555566666666666666555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-05 Score=82.33 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=106.1
Q ss_pred CcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHHhc
Q 003872 99 FLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL-----------GTSLSPNVYDSVLVSLVRK 167 (790)
Q Consensus 99 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~ 167 (790)
.++++.+.++.|...++..+..+...+..-|...=-.+..+++|+..... ++..|+++.-..+.+.|+.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 55667777777777777777777777777777776677778888877643 3567888888999999999
Q ss_pred CChhHHHHHHHHHHHHh----ccCCCCCcccccCCCc-----chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC----
Q 003872 168 KQLGLAMSILFKLLEAC----NDNTADNSVVESLPGC-----VACNELLVALRKSDRRSEFKQVFERLKEQKEFEF---- 234 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 234 (790)
|++.+...+.++----. .....+....+..|-. ..+-.=+-.|.-.++..+-+++|-+-.. .+-.|
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvN-ps~~p~VvG 816 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVN-PSRTPQVVG 816 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcC-Ccccchhhh
Confidence 99999887765420000 0000000000122211 1121222223333333333443333221 11111
Q ss_pred -------c-hhhH------------HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 235 -------D-IYGY------------NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 235 -------~-~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
+ ...- .-|..-.-+.+++.-...+++...+.|.. |..++|+|...|...++
T Consensus 817 ~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 817 ALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 1 1111 22233344556666667777888888877 88999999888776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-06 Score=83.17 Aligned_cols=451 Identities=15% Similarity=0.065 Sum_probs=254.3
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--h
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC--V 283 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~ 283 (790)
=++.+...+++++|.+....+.. ..+-+...+..-+-+..+.+.+++|+.+.+.-... ..+..-+ +=.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHH
Confidence 35566778899999999999985 34556677777777888889999999665543211 1111111 234444 6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 284 VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 284 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
.+..++|+..++-.. +.+..+...-...+.+.+++++|+++|+.+.+++.+ +. ...+.+-+.. ...+...
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~---d~~~r~nl~a--~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQ---DEERRANLLA--VAAALQV 161 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hH---HHHHHHHHHH--HHHhhhH
Confidence 889999999988332 233445666667888999999999999999887543 22 1111111100 0011111
Q ss_pred HHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCC--------CC-----CCHh-hHHHHHHHHHHcCC
Q 003872 364 FEKMVQDGVRTSCWTHNIL---IDGLFRNGRAEAAYTLFCDLKKKG--------KF-----VDGI-TFSIVVLQLCREGQ 426 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~~-~~~~ll~~~~~~g~ 426 (790)
..+......| ..+|..+ .-.+...|++..|+++++...+.+ .. -... .-..|...+...|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0122222223 2344443 344567899999999998873221 10 0011 12234445667899
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH---HHHHhcCCchH--HHHHHHHHHhCCC----------ccchHhHHHHHHHH
Q 003872 427 IEEALRLVEEMEGRGFVVDLVTISSLL---IGFHKYGRWDF--TERLMKHIRDGNL----------VLDVLKWKADVEAT 491 (790)
Q Consensus 427 ~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~g~~~~--a~~~~~~~~~~~~----------~~~~~~~~~~i~~~ 491 (790)
.++|..++...++.... |........ .++....++-. +...++....... ....+..|..+-.+
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887543 432222221 12222222111 1122221111000 00000011111111
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
+.+..+
T Consensus 319 ~tnk~~-------------------------------------------------------------------------- 324 (652)
T KOG2376|consen 319 FTNKMD-------------------------------------------------------------------------- 324 (652)
T ss_pred HhhhHH--------------------------------------------------------------------------
Confidence 110000
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLA--KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 649 (790)
+-......-+.......+..++....+ ...+..+.+++....+....-+..+.-.++......|+++.|.+++
T Consensus 325 -----q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 -----QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred -----HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000111111112223334444444332 2356778888877766543333455666777788999999999999
Q ss_pred H--------HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHH
Q 003872 650 N--------EMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG-GYLD----VVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 650 ~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A 716 (790)
. ...+.+..| .+..++...|.+.++-+.|..++.+.+..-. ..+. ..++.-....-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 555555544 4556677778888887777777776654310 1122 22333344455678999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 717 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
..+++++.+. ..+|..+...++.+|++. +.+.|..+-..+
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999985 366888899999999886 467787776655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-05 Score=76.04 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=97.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHH-hc
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI-QGLG-KM 674 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~ 674 (790)
-...+...+++++|.-.|+..+... +-+..+|.-|+..|...|.+.+|.-+-++..+. ++.+..+...+. ..|. ..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc
Confidence 3345556677777777777666553 446677777777777777777776666555443 233444443332 2222 22
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
..-++|.+++++..+. .|+ ....+.+...|...|..+++..++++... ..||..-.+.|.+.+...+.+.+|.+
T Consensus 418 ~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2346777777776654 344 33455666667777777777777777665 36677777777777777777777777
Q ss_pred HHHHHHh
Q 003872 754 FLKMMLD 760 (790)
Q Consensus 754 ~~~~m~~ 760 (790)
.|....+
T Consensus 493 ~y~~ALr 499 (564)
T KOG1174|consen 493 YYYKALR 499 (564)
T ss_pred HHHHHHh
Confidence 7777664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-07 Score=93.66 Aligned_cols=250 Identities=17% Similarity=0.101 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEEL-----GT-SLSP-NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADN 191 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (790)
..++..+...|...|+++.|+.+++...+. |. .|.. ...+.+...|...+++.+|..+|++++.......+..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777999999999999999999988775 21 2232 2355677889999999999999999877543222111
Q ss_pred cccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC-CCC
Q 003872 192 SVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL-VPD 270 (790)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~ 270 (790)
.+.-..+++.|...|.+.|++++|...++...+ ++++ ..|. .|.
T Consensus 279 ----h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~--~~~~~~~~ 323 (508)
T KOG1840|consen 279 ----HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEK--LLGASHPE 323 (508)
T ss_pred ----CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHH--hhccChHH
Confidence 122234555666666666666666666555443 1111 0011 111
Q ss_pred H-hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-
Q 003872 271 L-HTYNSLIQVLCVVGKVKDALIVWEELKGS-----GH--EPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN----GL- 337 (790)
Q Consensus 271 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~- 337 (790)
+ ..++.+...++..+++++|..++....+. |. .--..+++.|...|...|++++|.++++..... +-
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 1 22444555666667777777666654321 10 011346677777777777777777777766532 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 338 -IP-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQ----DG--VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 338 -~p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
.+ ....++.+...|.+.+...+|.++|.+... .| .+-...+|..|...|...|+++.|+++.+...
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 123455566666666666666666665432 11 11223456666666666666666666655544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-07 Score=81.86 Aligned_cols=188 Identities=15% Similarity=0.045 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
.+...+...|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+-.+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 455678899999999999999999999886 5677889999999999999999999999999874 33667888888889
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 750 (790)
|..|.+++|...|++++......--..+|..+.-+..+.|+.+.|...|++..+. .| ...+...+.......|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999987633334568888888888999999999999999985 33 35667789999999999999
Q ss_pred HHHHHHHHHhCCCCCCccchhHHHHHHHHHHhhh
Q 003872 751 AHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLK 784 (790)
Q Consensus 751 A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~~ 784 (790)
|..+++.....+. ++..+.-+...+.+.+++.-
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999987654 66655444455555555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-05 Score=81.66 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
..++++...|+-+.|-++-+ ..| + -.+.|+.|.+.|.+..|.+.-..=.. +..|......+..++.+..
T Consensus 594 sy~q~l~dt~qd~ka~elk~---sdg-----d-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAELKE---SDG-----D-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHhcCchhhhhhhcc---ccC-----c-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhH
Confidence 44556666677666655431 111 1 13467888888888887765533222 2245666666666666666
Q ss_pred ChhHHHHHHHHH
Q 003872 169 QLGLAMSILFKL 180 (790)
Q Consensus 169 ~~~~a~~~~~~~ 180 (790)
-+++|-.+|+++
T Consensus 663 lydkagdlfeki 674 (1636)
T KOG3616|consen 663 LYDKAGDLFEKI 674 (1636)
T ss_pred HHHhhhhHHHHh
Confidence 666666666655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-07 Score=88.56 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++.+|+.+...+...|++++|...|+...+.. +-+...|..+...+...|++++|+..++...+.. |+.......
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~ 171 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALW 171 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3456778888888888888888888888888764 3456677777788888899999999998888753 332222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCC-ChHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS---G--INP-DVVTFNTLIEV 741 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~~~~~l~~~ 741 (790)
...+...++.++|...+++.... ..|+...| .+ .....|+..++ +.+..+.+. . +.| ....|..+...
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 22344567889999988776544 23443322 22 23334555444 344444431 1 111 23578888899
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 742 NGKAGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
+...|++++|+..|++..+.+ +||.+-+.
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 999999999999999988653 34554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-05 Score=74.37 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHH-HHHHHH
Q 003872 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYD-SVLVSL 164 (790)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~ 164 (790)
.+.+.+..+.+..++.+|++++....++..+ +......+...|-+..++..|-+.|+++-... |...-|. .-.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3666777788889999999999998887633 67778888888889999999999999987753 3333332 234566
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHH----HHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELL----VALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
-+.+.+..|+.+...+.+. + ...+..+ ......+++..+..+.++.... -+..+.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~--------------~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~i 148 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN--------------P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQI 148 (459)
T ss_pred HHhcccHHHHHHHHHhcCC--------------H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhc
Confidence 7788888999888877442 1 1111111 1123456777777777776531 1445555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE 303 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 303 (790)
.......+.|+.+.|.+-|+...+.+--.....|+..+ ++.+.|+.+.|++...++.++|+.
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 55556678899999999998888765444566777655 444678888999988888877753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-06 Score=83.03 Aligned_cols=221 Identities=11% Similarity=0.009 Sum_probs=153.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777754334333 356778888899999999999999999887533 6788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
..|+...+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998763 3456778888888889999999999999988753 443322222223445678999999997765432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 003872 372 VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK---GKF--V-DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443 (790)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 443 (790)
.++...+ .+.. ...|+...+ ..+..+.+. .+. | ....|..+...+.+.|++++|...|++..+.++.
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2333222 2222 234554443 244444322 111 1 2356888888899999999999999999877543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-05 Score=83.40 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=80.2
Q ss_pred HHcCChHHHHHHHHHHHhC---------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHH--
Q 003872 602 LAKGKLNLACKLFEIFTDM---------GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK-FCPTDIATYNVVIQ-- 669 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~---------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~-- 669 (790)
..+|+.++-....+.+... |.+.+...|.+......+.+.+.+|..+..+.+.. ..+-|...||.+..
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4455555554444444221 34455566666666666777777776666654321 12345666665332
Q ss_pred --HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCC-hHHHHHHHHHHhcc
Q 003872 670 --GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPD-VVTFNTLIEVNGKA 745 (790)
Q Consensus 670 --~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~ 745 (790)
.++..|.++.|...+...... .+..+--+-+.. ...|+++++.+.|+++.. ..-.-+ .+....++.+....
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~e----vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWME----VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccchh----HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 233444555444333322111 122222111222 335788888888888876 222222 23445555666667
Q ss_pred CCHHHHHHHHHHHHhC
Q 003872 746 GRLKEAHYFLKMMLDS 761 (790)
Q Consensus 746 g~~~~A~~~~~~m~~~ 761 (790)
+.-+.|...+=+....
T Consensus 1089 ~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ccchHHHHHHHHHHHh
Confidence 7777777776666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00013 Score=70.50 Aligned_cols=80 Identities=14% Similarity=-0.025 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 608 NLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 608 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 687 (790)
++|.++++.-.... +.-....+.+...+...|..+.++.++++.... -||....+.|.+.+.....+++|.+.|..+
T Consensus 421 EKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445554444332 111223344444555566666666666655543 356666666666666666666666666665
Q ss_pred HHh
Q 003872 688 MKQ 690 (790)
Q Consensus 688 ~~~ 690 (790)
...
T Consensus 498 Lr~ 500 (564)
T KOG1174|consen 498 LRQ 500 (564)
T ss_pred Hhc
Confidence 553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00032 Score=73.83 Aligned_cols=342 Identities=14% Similarity=0.115 Sum_probs=198.6
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhC-CC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQED-DV-------VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLS 153 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (790)
.+-..|..+.+.+.+.++++-|.-.+-.|... |. .-+..+=..+.-.....|..++|+.+|++-.+.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 35578999999999999999888777666542 11 101122222333345779999999999988763
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc----
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---- 229 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 229 (790)
..|=+.|-..|.+++|.++-+.--+ ..-..+|......+...++.+.|++.|++....
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DR--------------iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDR--------------IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccc--------------eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 3444566778999999887654211 122346666777777778888887777653210
Q ss_pred ----CCCC----------CchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 230 ----KEFE----------FDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295 (790)
Q Consensus 230 ----~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (790)
...+ .|...|.-.....-..|+.+.|+.+|....+ |-++....|-.|+.++|-++-+
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHH
Confidence 0011 1333445555555567788888877776653 4556777788899999988876
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY----------NGLIPDTVVYNSLLNGMFKSRKVMEACQLFE 365 (790)
Q Consensus 296 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~ 365 (790)
+- -|....-.+.+.|-..|++.+|..+|.+... +++ +...+|..+ .....+.-.|-+.|+
T Consensus 963 es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal--~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 963 ES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLAL--MSGGSDLVSAARYYE 1032 (1416)
T ss_pred hc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHh--hcCchhHHHHHHHHH
Confidence 63 3556666788899999999999998876542 111 111121111 111222333444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 366 KMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCD--------LKKK--GKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
+.-. -+.-.+..|.+.|.+.+|+++--+ +... ....|+...+.-...++...++++|..++-
T Consensus 1033 e~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1033 ELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred Hcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3221 122334556677777766654321 1111 222344445555555555555665555543
Q ss_pred HHHh----------CC----------------CccC----HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 436 EMEG----------RG----------------FVVD----LVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 436 ~m~~----------~~----------------~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
...+ +| -.|+ ...+..+...|.+.|.+..|.+-|.+.-
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 3221 11 1122 2345566677788888877776665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-05 Score=79.67 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=51.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH-EPNE--FTHRIIIQ 314 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~ 314 (790)
....+...+...|++++|.+.+++..+.... +...+..+..++...|++++|...+++...... .++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334445555666666666666666655322 344555555666666666666666666554321 1121 22334555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003872 315 GCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~ 333 (790)
.+...|++++|..++++..
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 5666666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-05 Score=80.09 Aligned_cols=183 Identities=12% Similarity=0.016 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhcc
Q 003872 135 IDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSD 214 (790)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 214 (790)
...|...|-+..+.... -...|..|...|+...+...|...|+...+. ...+...+..+...|++..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL------------Datdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL------------DATDAEAAAASADTYAEES 540 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CchhhhhHHHHHHHhhccc
Confidence 45555555444443211 2235777777777777777777777777665 3445666777777788888
Q ss_pred chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003872 215 RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVW 294 (790)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (790)
+++.|..+.-..-++.....-...|....-.|...++...|..-|+......+. |...|..++.+|...|++..|.++|
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhh
Confidence 888777773333221111111223333445566777777777777777765433 6677777788888888888888888
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 295 EELKGSGHEPNE-FTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 295 ~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
.+.... .|+. ..---..-.-+..|.+.+|+..+....
T Consensus 620 ~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 620 TKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 776654 3332 111122223456677777777776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-05 Score=79.32 Aligned_cols=261 Identities=11% Similarity=0.035 Sum_probs=157.3
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHH---HHHHHhccCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI---CIHAFGCWGDLHTSLRLFKEMKEKGLVPD-LHTYNSLIQVLCVV 284 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 284 (790)
.+...|++++|.+.++...+. .|.+...+.. ........+..+.+.+.+... .+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 345566777777777776652 2223333332 111112234555555555441 122333 34445566788899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL-IPDT--VVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~ 361 (790)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|+.++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998875 55567788888999999999999999999876532 1232 34557888899999999999
Q ss_pred HHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--HHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003872 362 QLFEKMVQDGV-RTSCWTH-N--ILIDGLFRNGRAEAAYTL--FCDLKKKGK--FVDGITFSIVVLQLCREGQIEEALRL 433 (790)
Q Consensus 362 ~l~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 433 (790)
.++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999864322 1112111 1 223333334433333222 211111111 11112223566677889999999999
Q ss_pred HHHHHhCCCc---cC---HHHHHHHH--HHHHhcCCchHHHHHHHHHHh
Q 003872 434 VEEMEGRGFV---VD---LVTISSLL--IGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 434 ~~~m~~~~~~---~~---~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~ 474 (790)
++.+...... -. ..+-..++ -++...|+++.|.+.+.....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998764222 01 11222233 345688999999999998776
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-05 Score=71.23 Aligned_cols=320 Identities=15% Similarity=0.091 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
--|.+++..+.+-.++++|++++....++.. .+...++.|..+|-...++..|-..++++-.. .|.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-------------~P~ 76 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-------------HPE 76 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------ChH
Confidence 3467778888888999999999988877652 36667888888999999999999999988653 343
Q ss_pred cchHHH-HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH--HHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 200 CVACNE-LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH--AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 200 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
..-|.. -...+.+.+.+.+|..+...|... |+...-..-+. ...+.+|+..+..++++....| +..+.+.
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 333332 345567788889999988888752 22211111111 2235688888888888876432 4444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGM-FKSR 355 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~ 355 (790)
......+.|+++.|.+-|+...+-+--.....|+..+..| +.++.+.|++...++.++|++-.+. ++.=+..- ...+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh
Confidence 5555667899999999999887764344566777655544 5688899999999998888652221 11000000 0000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-GKFVDGITFSIVVLQLCREGQIEEALRLV 434 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (790)
.+..-..+- ..+ -+..+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++-...+-+
T Consensus 228 svgNt~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 228 SVGNTLVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred cccchHHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 000000000 000 1223444444566778888888877777544 2345666665543321 234455555555
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKH 471 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (790)
.-+.+.+. .-..||..++-.|++..-++.|..++.+
T Consensus 300 qFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55555433 3456777788888888777777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00011 Score=73.81 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYN 240 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 240 (790)
.+.+..|+++.|...|-+.+.. .++|-+.|..-..+|+..|++++|.+=-.+-.+ +.|+ ...|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~ 74 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYS 74 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHH
Confidence 3456778899999888888775 566778888888899999999988765555443 5566 46788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
-...++.-.|++++|+.-|.+-.+.... +...++-+..++
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 8888888889999999999988876322 455566666665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00044 Score=69.61 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 607 LNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
.+....+++++...- ..|+ -+|..+|+...+..-+..|..+|.++.+.+..+ ++.+.++++.-||. +|...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 334444455444332 2333 567778888888888888889998888877666 77788888887665 7888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+--++.. .-+..--...++-+...++-..|+.+|++....++.|+ ..+|..++.-=..-|++..++++-+++...
T Consensus 425 eLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8777763 34455556777778888888888889988888766665 578888888888888888888888887643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=84.51 Aligned_cols=170 Identities=20% Similarity=0.142 Sum_probs=106.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH----Hh
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL----GK 673 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~ 673 (790)
...+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|... .-+..++ .-
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l-~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSIL-TQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH-HHHHHHHHHHHhC
Confidence 34455667788777766432 34555666777788888888888888888775 334332 2233333 22
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH-HHHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL-KEAH 752 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~ 752 (790)
...+++|..+|+++.++ ..++..+.|.+..++...|++++|.+++.+....+ +-+..+...++-+....|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 33578888888887665 45777888888888888888888888888876543 22466666777777777776 6677
Q ss_pred HHHHHHHhCCCCCCccchhHHHHHHHHHH
Q 003872 753 YFLKMMLDSGCTPNHVTDTTLDFLGREID 781 (790)
Q Consensus 753 ~~~~~m~~~~~~p~~~t~~~l~~l~~~~~ 781 (790)
+++.++... .|++.-..-+...-..+|
T Consensus 257 ~~l~qL~~~--~p~h~~~~~~~~~~~~FD 283 (290)
T PF04733_consen 257 RYLSQLKQS--NPNHPLVKDLAEKEAEFD 283 (290)
T ss_dssp HHHHHCHHH--TTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHH
Confidence 788887754 565544333333333333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00055 Score=68.88 Aligned_cols=85 Identities=8% Similarity=0.026 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 682 (790)
++..-|.++|+.-.+.- .-++.--...++.+...++-..|..+|++....+..|| ..+|..++.--..-|++..+.+
T Consensus 415 kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 44555666666544331 23333445566666667777777777777766644444 3467777776667777777777
Q ss_pred HHHHHHHh
Q 003872 683 ILDKLMKQ 690 (790)
Q Consensus 683 ~~~~~~~~ 690 (790)
+-+++...
T Consensus 494 lekR~~~a 501 (656)
T KOG1914|consen 494 LEKRRFTA 501 (656)
T ss_pred HHHHHHHh
Confidence 76666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00015 Score=85.70 Aligned_cols=343 Identities=12% Similarity=0.024 Sum_probs=201.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHH
Q 003872 316 CCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG--V----RTS--CWTHNILIDGLF 387 (790)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~--~----~~~--~~~~~~li~~~~ 387 (790)
....|+++.+...+..+.......+..........+...|+++++...+......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666554211111122222333444556788888888887765421 0 111 111222334455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-ccCHHHHHHHHHHHHh
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDG----ITFSIVVLQLCREGQIEEALRLVEEMEGR----GF-VVDLVTISSLLIGFHK 458 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~ 458 (790)
..|+++.|...+++........+. ...+.+...+...|+++.|...+++.... |. ......+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788899998888887653111121 23444555667788999988888877643 11 1112344555667788
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|+++.|...+++..+..-.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~------------------------------------------------------------ 563 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEE------------------------------------------------------------ 563 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence 89999998888776541000
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFT 618 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 618 (790)
. ...........+..+...+...|++++|...+....
T Consensus 564 ------------------------------------------~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 564 ------------------------------------------Q-HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred ------------------------------------------h-ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 0 000000112233445666777899999998888765
Q ss_pred hCC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 619 DMG--VHP--VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATY-----NVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 619 ~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
... ..+ ....+..+...+...|++++|...+.++....... ....+ ...+..+...|+.+.|..++....
T Consensus 601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 431 112 23344456667788999999999988875431111 11111 112244556789999999987654
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 689 KQGGGYLD---VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 689 ~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
... .... ...+..+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 681 ~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 681 KPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321 1111 111345667788899999999999988752 33332 34566777889999999999999999886
Q ss_pred CC
Q 003872 761 SG 762 (790)
Q Consensus 761 ~~ 762 (790)
..
T Consensus 760 la 761 (903)
T PRK04841 760 LA 761 (903)
T ss_pred Hh
Confidence 53
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0003 Score=83.09 Aligned_cols=341 Identities=12% Similarity=0.004 Sum_probs=208.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCHH--HHHHHHHHH
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL------IPDTV--VYNSLLNGM 351 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~--~~~~li~~~ 351 (790)
.....|+++.+...++.+.......+..........+...++++++...+......-- .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222223344455678999999999987754210 11111 122233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHH
Q 003872 352 FKSRKVMEACQLFEKMVQDGVRTSC----WTHNILIDGLFRNGRAEAAYTLFCDLKKK----GKF-VDGITFSIVVLQLC 422 (790)
Q Consensus 352 ~~~~~~~~a~~l~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~ 422 (790)
...|++++|...++.....-...+. ...+.+...+...|+++.|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 23455666777899999999999887653 111 11234455666778
Q ss_pred HcCCHHHHHHHHHHHHhC----CCc--c-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 423 REGQIEEALRLVEEMEGR----GFV--V-DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.....-..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------- 606 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---------------- 606 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc----------------
Confidence 899999999998887543 221 1 22334455566777899999999988765520000
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 607 -------------------------------------------------------------------------------- 606 (903)
T PRK04841 607 -------------------------------------------------------------------------------- 606 (903)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHH
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHP-VNYTY-----NSMMSSFVKKGYFNQAWGVL 649 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~ 649 (790)
+ .......+..+...+...|+.++|...++......... ....+ ...+..+...|+.+.|...+
T Consensus 607 ---------~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 676 (903)
T PRK04841 607 ---------Q-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWL 676 (903)
T ss_pred ---------C-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 00112334456677788899999999888775421111 11111 11224455688999999988
Q ss_pred HHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 650 NEMGEKFCPTDI---ATYNVVIQGLGKMGRADLASTILDKLMKQG---GGYLD-VVMYNTLINVLGKAGRFDEANMLFEQ 722 (790)
Q Consensus 650 ~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 722 (790)
............ ..+..+..++...|+.++|...++++.... +..++ ..+...+..++...|+.++|...+.+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 677 RQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776543211111 123456677888999999999999887642 12222 23566667778899999999999999
Q ss_pred HHhc
Q 003872 723 MRTS 726 (790)
Q Consensus 723 m~~~ 726 (790)
..+.
T Consensus 757 Al~l 760 (903)
T PRK04841 757 ALKL 760 (903)
T ss_pred HHHH
Confidence 9874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-05 Score=80.41 Aligned_cols=232 Identities=15% Similarity=0.074 Sum_probs=160.7
Q ss_pred HHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 92 RTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 92 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
..+.+.|++.+|.-+|+.....++. +..+|..|.......++-..|+..+++..+... .+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 4467889999999999999988743 889999999999999999999999999999763 47788999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCC
Q 003872 172 LAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGD 251 (790)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 251 (790)
.|...|+..+........... ..++...-+. ..+..........++|-.+....+..+|...+..|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~---a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVS---AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCccchhccc---cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999998775422110000 0000000000 11111222334455555555445555667777777777777788
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 252 LHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-EFTHRIIIQGCCKSYRMDDAMKIFS 330 (790)
Q Consensus 252 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 330 (790)
+++|...|+..+...+. |...||.|...++...+.++|+..|.+.++. .|. +.+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 88888888887776433 5677888887777777788888888887765 454 2344445556777777777777775
Q ss_pred HHH
Q 003872 331 EMQ 333 (790)
Q Consensus 331 ~m~ 333 (790)
...
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=59.18 Aligned_cols=31 Identities=58% Similarity=0.701 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
+.||..||++||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4455555555555555555555555555444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00059 Score=64.51 Aligned_cols=206 Identities=13% Similarity=0.046 Sum_probs=116.3
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
.+.-.|+...|+.+...+.+.. +.|...|..-..+|...|++..|..-++...+.. ..+..++--+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3444566666776666666652 2355666666666666777666666666555443 2334444445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 325 AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404 (790)
Q Consensus 325 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 404 (790)
++...++..+. .||...+-..-. .+.+..+.++.|. .....++|.++++-.+...+
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHh
Confidence 66666666553 344432211111 1111122222221 22344566666776666666
Q ss_pred CCCCCCHhh---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 405 KGKFVDGIT---FSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 405 ~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
......... +..+-.++...|++.+|++...+++... +.|+.++..-..+|.-...+|.|..-|+...+.+-
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 643322222 3334445556778888888888877542 22467777777788777888888888887777543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.9e-08 Score=58.42 Aligned_cols=33 Identities=52% Similarity=0.731 Sum_probs=16.1
Q ss_pred cCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 726 SGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 726 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
.|+.||..||++||++|++.|++++|.+++++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 034455555555555555555555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-05 Score=83.87 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=170.1
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc-----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhH
Q 003872 410 DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVV-----DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKW 484 (790)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 484 (790)
....|-..|....+.++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+-
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--------- 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--------- 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---------
Confidence 4456777888888899999999999998865 322 2346677777666777777778888877651
Q ss_pred HHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhh
Q 003872 485 KADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVK 564 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (790)
T Consensus 1527 -------------------------------------------------------------------------------- 1526 (1710)
T KOG1070|consen 1527 -------------------------------------------------------------------------------- 1526 (1710)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 003872 565 SDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQ 644 (790)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 644 (790)
.....+|..|...|.+.+..++|.++++.|.+.- .-....|..++..+.+..+-++
T Consensus 1527 -----------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1527 -----------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred -----------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence 1123467789999999999999999999998763 3577899999999999999999
Q ss_pred HHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 645 AWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 645 A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
|..++.++++.-.+- ......-.+..-.+.|+.+++..+|+..+... +.-...|+.+|+.-.+.|+.+.++.+|++.
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998862221 23344455566678899999999999998874 445667999999999999999999999999
Q ss_pred HhcCCCCC--hHHHHHHHHHHhccCC
Q 003872 724 RTSGINPD--VVTFNTLIEVNGKAGR 747 (790)
Q Consensus 724 ~~~g~~p~--~~~~~~l~~~~~~~g~ 747 (790)
...++.|- ...|.-++.-=-..|+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99888776 3455555554444455
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00047 Score=65.18 Aligned_cols=211 Identities=14% Similarity=0.048 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhc
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRK 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~ 167 (790)
.+-..+..+|++.+|+.-|....+.++ -+-.++-.-...|...|+-..|+.-+.+..+.. ||-. .-..-...+.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhc
Confidence 455666677777777777776666542 233444455566777777777777777776643 4432 122333456677
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcc-cccCCCcc--hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSV-VESLPGCV--ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH 244 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 244 (790)
|.++.|..-|+.++.....+...... ....+... ..-..+..+...|+...|++....+.+- .+.|...|..-..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAK 197 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHH
Confidence 77777777777777643211100000 00000011 1122344556688999999999999863 4568888999999
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEF 307 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 307 (790)
+|...|++..|+.=++...+..-. ++.++--+-..+...|+.+.++...++..+. .||-.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 999999999999877777655323 5666666778888999999999999999876 56543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=82.04 Aligned_cols=148 Identities=21% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF----KSRK 356 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~ 356 (790)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 33345555555444321 23344444555555555555555555555543 1222 2222222222 1224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQI-EEALRLVE 435 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 435 (790)
+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 2345555555555555566666666655555444322 344444444444445544 44555555
Q ss_pred HHHh
Q 003872 436 EMEG 439 (790)
Q Consensus 436 ~m~~ 439 (790)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0001 Score=74.07 Aligned_cols=389 Identities=14% Similarity=0.055 Sum_probs=236.6
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
..+...|+..|--+....| +|...|+--..+++..|+|++|++--....+.. +.-+..|.....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHH
Confidence 4677889999988878777 688899999999999999999988877777764 335778999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--HHHHhccCCCCCcccccCCCcchHHHHHHHHHhc----
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFK--LLEACNDNTADNSVVESLPGCVACNELLVALRKS---- 213 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 213 (790)
..|.+-++.. +.+...++-+..++... .. +.+.|.. ++..-...+... .......|..++..+-+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~----~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTN----YSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhh----hhhccHHHHHHHHHhhcCcHhh
Confidence 9999988864 23455677777776111 10 0111110 000000000000 000111222222222110
Q ss_pred ---cchHHHHHHHHHHHh--------------cCCCCC----------------------chhhHHHHHHHHhccCChHH
Q 003872 214 ---DRRSEFKQVFERLKE--------------QKEFEF----------------------DIYGYNICIHAFGCWGDLHT 254 (790)
Q Consensus 214 ---~~~~~a~~~~~~~~~--------------~~~~~~----------------------~~~~~~~li~~~~~~g~~~~ 254 (790)
..........-.+.. ..+..| -..-...+..+..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111111000 001111 01124456777777888999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHhcCCHHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIII-------QGCCKSYRMDDAMK 327 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-------~~~~~~~~~~~a~~ 327 (790)
|.+.+....+.. -+..-++....+|...|.+..+....+...+.|. -...-|+.+- .+|.+.++++.+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888774 3555566777888888888888777777666552 2223333333 35556677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 328 IFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSC-WTHNILIDGLFRNGRAEAAYTLFCDLKKKG 406 (790)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 406 (790)
.|.+.......|+.. .+....+++....+...-.+ |.. .-...=...+.+.|++..|+..|.+++...
T Consensus 320 ~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 888866544333321 22333444444444433322 221 111222556778899999999999999886
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 003872 407 KFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 407 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (790)
.. |...|..-..+|.+.|.+..|+.=.+..++.. ++....|.-=..++....+++.|.+.|.+.++.+
T Consensus 389 P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred Cc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 78889999999999999999998877777762 1123333333445555668888888888888754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-05 Score=74.72 Aligned_cols=172 Identities=13% Similarity=0.014 Sum_probs=130.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN---YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI-- 661 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 661 (790)
.+..+..+..++..+...|++++|...|+.+.... +.+. ..+..+..++...|++++|...++++.+.......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 34567788888999999999999999999988763 2222 46677888999999999999999999886432111
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCHHHH
Q 003872 662 ATYNVVIQGLGKM--------GRADLASTILDKLMKQGGGYLDVVMY-----------------NTLINVLGKAGRFDEA 716 (790)
Q Consensus 662 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A 716 (790)
..+..+..++... |+.+.|.+.++.+....+- +...+ ..+...|.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 2344455555544 7899999999999987522 22221 1345667888999999
Q ss_pred HHHHHHHHhcC--CCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 717 NMLFEQMRTSG--INPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 717 ~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
...+++..+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998742 1223578889999999999999999999998754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0039 Score=67.09 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHH--HHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRT--VCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE 140 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (790)
-..|+.-...+.+..|+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..
T Consensus 25 fkkal~~~~kllkk~Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44566666666555542 223344444 46889999999999888776644 88899999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc-----
Q 003872 141 ILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR----- 215 (790)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----- 215 (790)
+|++..... |+......++.+|++.+.+.+-.++--++.+. .+.+...+=.+++.+.+...
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~------------~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN------------FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCcccchHHHHHHHHHHhccCCccc
Confidence 999998865 66888899999999999887766655555543 34444555555555543221
Q ss_pred -----hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHH-HHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 003872 216 -----RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLF-KEMKEKGLVPDLHTYNSLIQVLCVVGKVKD 289 (790)
Q Consensus 216 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 289 (790)
..-|...++.+.+..|---+..-...-...+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 12355666666664431111111122223334567788888887 344444333344444566777778888888
Q ss_pred HHHHHHHHHhCC
Q 003872 290 ALIVWEELKGSG 301 (790)
Q Consensus 290 a~~~~~~~~~~g 301 (790)
..++-.++...|
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 888888887775
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00023 Score=79.37 Aligned_cols=166 Identities=13% Similarity=0.012 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.|-++++.-...|.-+...++|++..+ + .-.-..|..|...|.+.+.+++|.++++.|.+. +......|...+..+
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcq-y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQ-Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHH-h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHH
Confidence 344444444444444444455554443 1 111233444555555555555555555555443 122444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN---EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVM 358 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 358 (790)
.+.++-+.|..++.+..+. -|. .....-.+..-.+.|+.+.+..+|+....... -....|+..|++-.+.|+.+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred hcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHH
Confidence 5555555555555554433 222 11222223333344555555555555444321 13344555555555555555
Q ss_pred HHHHHHHHHHHCCCCC
Q 003872 359 EACQLFEKMVQDGVRT 374 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~ 374 (790)
.+..+|++....++.|
T Consensus 1652 ~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 5555555555544433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00026 Score=73.96 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+....+|-.+..+..+.++++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.. .-+..+|...
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENy 593 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENY 593 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeech
Confidence 4456677788888889999999999999988764 5566789999999999999999999999999986 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
+....+.|.++.|.+.+.++........|......++....+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 777889999999999999987765334466655555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=73.26 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=98.0
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
....+..+|+.+...|.-.|--.|++++|+.-|+.++... +.|..+||-|...++...+.++|++.|.++++ ++|+
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~ 496 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPG 496 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCC
Confidence 3445545778888888888888899999999999888752 44677889998888888889999999998887 4565
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHh---c------CCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 003872 697 VV-MYNTLINVLGKAGRFDEANMLFEQMRT---S------GINPDVVTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 697 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~---~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
-+ ..-.|.-.|...|.+++|.+.|-+.+. . +..++..+|.+|=.++.-.++.+-+.++.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 33 333455578888999999888776653 2 12224457777777777777776565543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.1e-05 Score=68.39 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=134.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+..+ ..+-..+...|+-+....+........ +.+....+.++....+.|++..|...+.+.... -++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHH
Confidence 445555 556677777888888877776654332 456566777889999999999999999999886 56799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.-+|.+.|+.+.|..-|.+..+-. .-+...+|.|...|.-.|+.+.|..++......+-. |..+-..|.-+....|+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 999999999999999999999874 446667788888888999999999999999876433 67777788889999999
Q ss_pred HHHHHHHHHHHH
Q 003872 748 LKEAHYFLKMML 759 (790)
Q Consensus 748 ~~~A~~~~~~m~ 759 (790)
+++|..+...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 999988876654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0006 Score=67.65 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV---GK----VKDALIVWEELKGSGHEPNEF 307 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~----~~~a~~~~~~~~~~g~~~~~~ 307 (790)
+..+|+.....+...|+++++++.++++.+.++. +...|+....++.+. |. .++.++...+..... +-+..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 3445555555555555555555555555554433 334444433333222 11 133444444444332 34455
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKS----YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 308 ~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (790)
.|+.+...+... +...+|.+.+.+..+.++ .+......|+..|+
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 555555555442 222345555555444321 23444455555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0008 Score=66.79 Aligned_cols=203 Identities=8% Similarity=-0.036 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHH
Q 003872 250 GDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG-KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM--DDAM 326 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~--~~a~ 326 (790)
+..++|+.+..++.+.... +..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.+.. ++++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4444555555555443111 2223333333333333 3455555555554432 23333344333333333331 3445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHH
Q 003872 327 KIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRN---GR----AEAAYTLF 399 (790)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~ 399 (790)
.+++.+.+...+ +..+|+.....+...|+++++++.++.+++.+. -+..+|+.....+.+. |. .++.+++.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 555555443322 444555555555555555555555555555442 2333444433333322 11 13344444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 400 CDLKKKGKFVDGITFSIVVLQLCRE----GQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
.++...... |...|+-+...+... +...+|..++.+....++. +...+..|+..|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 444444322 444454444444441 2334455555555443322 45555556665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00071 Score=61.93 Aligned_cols=151 Identities=20% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK---- 353 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 353 (790)
...|+..|++++|++...... +......=+..+.+..+.+-|.+.++.|.+- -+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555555555544411 1122222233344455555555555555543 233444444444432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQ-IEEALR 432 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~ 432 (790)
.+.+..|.-+|++|.++ ..|+..+.+....++...+++++|..+++....+... ++.+...++-+-...|. .+...+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 23455555666665543 2455555555555555666666666666665555433 33443333333333333 233344
Q ss_pred HHHHHHh
Q 003872 433 LVEEMEG 439 (790)
Q Consensus 433 ~~~~m~~ 439 (790)
.+.++..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=75.49 Aligned_cols=221 Identities=11% Similarity=-0.013 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 003872 151 SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230 (790)
Q Consensus 151 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (790)
+|-...-..+...+...|-...|..+|+++ ..|..++.+|...|+..+|..+..+..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------------------emw~~vi~CY~~lg~~~kaeei~~q~le-- 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------------------EMWDPVILCYLLLGQHGKAEEINRQELE-- 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------------------HHHHHHHHHHHHhcccchHHHHHHHHhc--
Confidence 344444555566666677777777777664 2355566677777777777666666654
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHR 310 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 310 (790)
-+|+...|..+.+......-+++|.++.+....+ .-..+.....+.+++.++.+.|+.-.+.. +....+|-
T Consensus 453 -k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf 523 (777)
T KOG1128|consen 453 -KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWF 523 (777)
T ss_pred -CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHH
Confidence 3556666666666666555666666666554322 11111112223566677777766655443 44455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003872 311 IIIQGCCKSYRMDDAMKIFSEMQYNGLIP-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRN 389 (790)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (790)
..-.+..+.++++.|.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+....+.
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhc
Confidence 6666666667777777777666653 23 34467777777777777777777777766655 23344555556666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 003872 390 GRAEAAYTLFCDLKKK 405 (790)
Q Consensus 390 ~~~~~a~~~~~~~~~~ 405 (790)
|.+++|++.+.++...
T Consensus 601 ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDL 616 (777)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777776665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=65.61 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
..+.++....+.|++.+|...+++.. ..-++|...|+.+.-+|.+.|+++.|..-|.+..+.-.. +...++.+.-.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~ 178 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHH
Confidence 34445555555566666666665555 334556666666666666666666666666666655322 445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
.-.|+.+.|..++......+ .-|...-..+.......|+++.|.++...
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666666665553 33455555555666666666666665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00025 Score=68.32 Aligned_cols=185 Identities=12% Similarity=0.014 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSP---NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
....+..+...+...|++++|...|+++..... .++ .++..+..++...|++++|...++++++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------- 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--------- 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------
Confidence 344555555666666666666666666655432 111 3455556666666666666666666665421
Q ss_pred ccCCCcc---hHHHHHHHHHhc--------cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 003872 195 ESLPGCV---ACNELLVALRKS--------DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 195 ~~~~~~~---~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
.+.. ++..+...+... |++++|.+.|+.+.... +-+...+..+..... .. ....
T Consensus 102 ---~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~ 166 (235)
T TIGR03302 102 ---NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA 166 (235)
T ss_pred ---CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH
Confidence 1111 233333333332 67888888888887631 112222222211100 00 0000
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG--HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.....+...+.+.|++.+|...++...... .+.....+..+..++...|++++|..+++.+...
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011245567888899999999999887652 1223567888888999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00054 Score=63.11 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=122.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.-+..|...|+++.+......+.. |. . .+...++.+++...++...+.. +.|...|..+...|...|
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 345778889998887555433221 11 0 1223677788888888888763 568889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHH
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVL-GKAGR--FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAH 752 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 752 (790)
+++.|...+++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+
T Consensus 88 ~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999874 44777788887764 67777 59999999999986322 5788889999999999999999
Q ss_pred HHHHHHHhCCCCCCccchhHH
Q 003872 753 YFLKMMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 753 ~~~~~m~~~~~~p~~~t~~~l 773 (790)
..++++.+. .+|+..-..++
T Consensus 165 ~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 165 ELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHhh-CCCCccHHHHH
Confidence 999999876 35555444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.016 Score=62.53 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=150.3
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHH--HHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVA--LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
...+++..|.....++++. .|+. .|...+.+ +.+.|+.++|..+++..... +.. |..|...+
T Consensus 20 ld~~qfkkal~~~~kllkk-------------~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-------------HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-------------CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHH
Confidence 3456778888888888774 3443 23334444 46889999999888887652 222 78889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR- 321 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~- 321 (790)
-.+|...++.++|..+|+...+. .|+..-...+..+|++.+.+.+-.+.--++.+. ++-+.+.+..++..+...-.
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 99999999999999999999877 677777777888888888776544443333332 34556667777776654321
Q ss_pred ---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcC
Q 003872 322 ---------MDDAMKIFSEMQYNG-LIPDTVVYNSLLNGMFKSRKVMEACQLFEK-MVQDGVRTSCWTHNILIDGLFRNG 390 (790)
Q Consensus 322 ---------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~li~~~~~~~ 390 (790)
..-|.+.++.+.+.+ -.-+..-...-...+...|++++|+.++.. ..+.-..-+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 234666677776553 111222222333445677889999998843 333333334444556677788889
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 003872 391 RAEAAYTLFCDLKKKGKF 408 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~ 408 (790)
++.+..++..++...|..
T Consensus 241 ~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKGND 258 (932)
T ss_pred ChHHHHHHHHHHHHhCCc
Confidence 999999999888888643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00084 Score=74.51 Aligned_cols=168 Identities=7% Similarity=0.028 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNV-YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+...+..|+..+...+++++|.++.+...+ ..|+... |-.+...+...++...+.-+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 556778888888888888888888885544 5665543 33333455566665555433 22
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.......++.-+..+...|.. ..-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.
T Consensus 90 ----------l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn 155 (906)
T PRK14720 90 ----------IDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK 155 (906)
T ss_pred ----------hhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH
Confidence 2222233333333333334433 22344567777888888888888888888888776 336777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
+...|... ++++|.+++.+..+. +...+++..+.+++.++...
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888877 888888887776543 44445566666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=62.64 Aligned_cols=92 Identities=9% Similarity=-0.117 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHc
Confidence 34445555555555555555555442 2244455555555555555555555555555432 33444555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 711 GRFDEANMLFEQMRT 725 (790)
Q Consensus 711 g~~~~A~~~~~~m~~ 725 (790)
|++++|...|++..+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0003 Score=70.25 Aligned_cols=152 Identities=18% Similarity=0.077 Sum_probs=123.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 676 (790)
...+...|.+++|+..++.++..- +-|+..+......+.+.++..+|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334556789999999999988763 445555566777899999999999999999986 455 6667778899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
+++|..+++..... .+-|...|..|..+|...|+..+|..-. ...+...|+++.|+..+.
T Consensus 390 ~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHH
Confidence 99999999998877 4678889999999999999988776543 356777899999999999
Q ss_pred HHHhCCCCCCccchhHH
Q 003872 757 MMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 757 ~m~~~~~~p~~~t~~~l 773 (790)
...+. +.++..+|.-.
T Consensus 450 ~A~~~-~~~~~~~~aR~ 465 (484)
T COG4783 450 RASQQ-VKLGFPDWARA 465 (484)
T ss_pred HHHHh-ccCCcHHHHHH
Confidence 99876 56777776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=67.10 Aligned_cols=125 Identities=9% Similarity=0.049 Sum_probs=102.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 003872 604 KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGR--ADLA 680 (790)
Q Consensus 604 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 680 (790)
.++.+++...++...+.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456677887888877766 7788999999999999999999999999999874 3477788888876 467777 5999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 681 STILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 681 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
.+++++..+.. +-+...+..+...+...|++++|...|+++.+. ..|+..
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 99999999975 446778888888999999999999999999985 344443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0067 Score=55.82 Aligned_cols=159 Identities=20% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK--- 673 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 673 (790)
-...|+..+++++|++..+... +......=...+.+..+.+.|.+.+++|.+- .+..|.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3456777888888888776522 2222322334566777888889999988885 355677766666644
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH-HH
Q 003872 674 -MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK-EA 751 (790)
Q Consensus 674 -~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~-~A 751 (790)
.+.+..|.-+|+++-++ ..|+..+.+.+..++...|++++|..++++...+... +..+...++-+-...|... ..
T Consensus 185 ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 34688888899888776 6788888888888888889999999999988875333 5666666666666667654 34
Q ss_pred HHHHHHHHhCCCCCCccc
Q 003872 752 HYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 752 ~~~~~~m~~~~~~p~~~t 769 (790)
.+.+.+++.. .|.+.-
T Consensus 262 ~r~l~QLk~~--~p~h~~ 277 (299)
T KOG3081|consen 262 ERNLSQLKLS--HPEHPF 277 (299)
T ss_pred HHHHHHHHhc--CCcchH
Confidence 5667777643 455443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-06 Score=51.35 Aligned_cols=33 Identities=48% Similarity=0.695 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666665565555
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0021 Score=71.41 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=121.6
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.+...+..|+..+...+++++|.++.+...+..+-. ...|-.+...+.+.++...+..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l------------ 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLI------------ 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhh------------
Confidence 45567888999999999999999999999777632222 23333333366666666555544 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 276 SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
.......++..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|...
T Consensus 91 ---~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 91 ---DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred ---hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 2222222333333333333332 2223344555555555566666666666655554 22455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------------CCCCCHhhHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-------------------GKFVDGITFSI 416 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~ 416 (790)
+.++|.+++...... +...+++..+.++|.++... +..--..++-.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 555555555554432 22222333333333333322 11112334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 556666777788888888888776444 5566666777665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00026 Score=61.49 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
++..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44446667888899999999999999998876 6688899999999999999999999999999873 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC
Q 003872 670 GLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
++...|+.++|...|+..++..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999864
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0024 Score=70.27 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
+.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|+...+.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666532 334566666666666666666666666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00045 Score=59.70 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
......+...+...|++++|.+.++.+...+ +.+...|..+..++.+.|++++|..++++....+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 3445556666777778888888887776653 3466677777777777788888888887776642 334666667777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 741 VNGKAGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
.+...|++++|..++++..+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 777888888888888777754 56555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0037 Score=68.93 Aligned_cols=135 Identities=10% Similarity=-0.064 Sum_probs=86.6
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 274 (790)
.+.+...+-.|.......|.+++|..+++...+ +.|+ ......+...+.+.+++++|...+++....... +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 344456666666677777777777777777765 3343 455556666667777777777777777665322 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555566667777777777777776632 334666666667777777777777777766643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=49.79 Aligned_cols=34 Identities=59% Similarity=0.843 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888999999999999999998888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=49.33 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTP 765 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 765 (790)
+|++++.+|++.|+++.|.+++++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00043 Score=59.82 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
.....+...+...|++++|...++.+...+ +.+...+..+...|...|+++.|..+++...... +.+...+..+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455556666777777777777666643 3355666666666777777777777777666542 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003872 707 LGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~ 726 (790)
|...|++++|.+.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-05 Score=48.63 Aligned_cols=33 Identities=39% Similarity=0.683 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 730 (790)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888887776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00037 Score=70.47 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 630 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
..|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++.+.+... +-+...+..-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 344445555667777777777776653 33 23345566666666667777777776552 3455555656666677
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 710 AGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.++++.|.++.+++... .|+ ..+|..|..+|.+.|++++|+..++.|.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777763 443 5577777777777777777777777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0038 Score=62.66 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNIC 242 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 242 (790)
+...|+++.|+..++.++.. .+.|...+......+.+.++..+|.+.++.+.. ..|+ ....-.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA------------QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHhcccchHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 33445555555555554443 223333333344445555555555555555543 1222 3333444
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
..++.+.|++.+|..+++...... +-|+..|..|..+|...|+..++..-..+..
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 455555555555555555554432 2244555555555555555555554444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.01 Score=54.25 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
..+-..|++++|.++++.+.+.. +.|.+++---+-..-..|..-+|++-+.+..+. +..|...|.-+...|...|+++
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 34456789999999999998887 667777776666677788888998888888877 6679999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTS 726 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 726 (790)
+|.-.+++++-.. +-+...+..+.+.+...| +++-|+++|.+..+.
T Consensus 172 kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 172 KAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999998863 335555566666655444 567788899988874
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.015 Score=53.22 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHh---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc-hHHHH
Q 003872 133 GKIDFAIEILDYMEEL---G-TSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV-ACNEL 206 (790)
Q Consensus 133 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 206 (790)
.+.++.++++..+... | ..++.. .|..++-+....|+.+.|....+++.... |.+. +-..-
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------------p~S~RV~~lk 92 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------------PGSKRVGKLK 92 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------------CCChhHHHHH
Confidence 4455566666555432 2 233333 35555566666666666666666655541 1111 11111
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
...+-..|++++|+++++.+.+. -|.|..++-.=+...-..|..-+|++-+....+. +..|...|.-+...|...|+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence 12233345555555555555531 1333444443333333344444444444444433 23345555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 003872 287 VKDALIVWEELKG 299 (790)
Q Consensus 287 ~~~a~~~~~~~~~ 299 (790)
+++|.-.++++.-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00056 Score=69.23 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.+-....+|+..+...++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++++.++. .+.+...+..-.
T Consensus 167 ~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa 241 (395)
T PF09295_consen 167 VNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQA 241 (395)
T ss_pred cchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 355566778888888899999999999999774 54 4445788888889999999999999976 345777777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
..|.+.++++.|+++.+++.+. .+-+..+|..|..+|...|++++|+-.+..+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8899999999999999999986 34456699999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=57.73 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGRF 713 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 713 (790)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+.... ..|+ ......+..++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555442 111 1112223344555566666666666655543 1111 11233345555556666
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 714 DEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 714 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
++|+..++...... .....+....++|.+.|++++|...|++
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665433221 2233445555666666666666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00078 Score=66.07 Aligned_cols=145 Identities=10% Similarity=0.072 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK-KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
.+|..++.+.-+.+..+.|..+|.+..+.+ ..+...|......... .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888888999999999998654 3345555555555333 56777799999998887 66688889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
+.+.++.+.|..+|++.+..-+... ....|..++..-.+.|+++.+.++.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 9999999999999999887621112 2358999999889999999999999998874 444444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0021 Score=56.15 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY---TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYN 665 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~ 665 (790)
...|..++..+ ..++...+...++.+.+.. +.+.. ..-.+...+...|++++|...|+........|. .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566666666 4889999999999998764 33322 233355678889999999999999998753332 22445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
.|...+...|++++|+..++.... .......+....++|.+.|+.++|+..|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 577888999999999999977432 2345667778899999999999999999864
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.075 Score=53.04 Aligned_cols=465 Identities=14% Similarity=0.082 Sum_probs=235.2
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH 244 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 244 (790)
-+.+++.+|..+|.++.+....... ........+.++++|.. ++.+.....+....+..|- ..|-.+..
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f------~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~ 85 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPF------LLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFK 85 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchH------HHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHH
Confidence 3456666666666666554221100 01112344556666654 3445555555555543332 22333333
Q ss_pred H--HhccCChHHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 003872 245 A--FGCWGDLHTSLRLFKEMKEK--GLVP------------DLHTYNSLIQVLCVVGKVKDALIVWEELKGS----GHEP 304 (790)
Q Consensus 245 ~--~~~~g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~ 304 (790)
+ +.+.+++.+|.+.+..-.+. +..| |-..=+..++.+...|++.++..+++++... ....
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34667888888777665543 2221 2222245567788899999999888887643 3347
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 305 NEFTHRIIIQGCCKSYRMDDAMKIFSEMQY---NGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
+..+|+.++-.+.++ +|-++.+ ..+-|+ |--++-.|.+. ...++...-..+.|....+..
T Consensus 166 ~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFST 228 (549)
T ss_pred cHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHH
Confidence 788888877666553 3434432 123333 22333333321 111111111123344444444
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc----CHHHHHHHHH
Q 003872 382 LIDGLFRN--GRAEAAYTLFCDLKKKGKFVDGI-TFSIVVLQLCREGQIEEALRLVEEMEGRGFVV----DLVTISSLLI 454 (790)
Q Consensus 382 li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~l~~ 454 (790)
++....-. .+..--+++++.-...-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ =..++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444322 12222233333334444445432 22333333333 5566665555554432221 2346777778
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
...+.++...|.+.+..+.-- .|+.. +.
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~l--dp~~s-vs------------------------------------------------- 334 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKIL--DPRIS-VS------------------------------------------------- 334 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCcch-hh-------------------------------------------------
Confidence 888888888888777765542 11111 00
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH-HHHHcCChHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS-IFLAKGKLNLACKL 613 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~ 613 (790)
..+ ..++..+..++. -=....+...-+.+
T Consensus 335 ------------------~Kl--------------------------------lls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 335 ------------------EKL--------------------------------LLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred ------------------hhh--------------------------------hcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 000 000001111110 00001122233455
Q ss_pred HHHHHhCCCCCChhhHHHHHHH---HHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHH----HHHhc---CCHHHHHH
Q 003872 614 FEIFTDMGVHPVNYTYNSMMSS---FVKKGY-FNQAWGVLNEMGEKFCPTDIATYNVVIQ----GLGKM---GRADLAST 682 (790)
Q Consensus 614 ~~~~~~~g~~~~~~~~~~li~~---~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~ 682 (790)
++......+. .......|+.+ +-+.|. -++|+++++.+.+. -..|..+-|.+.. +|.+. ..+.+-..
T Consensus 365 we~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 365 WEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5555554321 11222333333 333444 78899999988875 2345554444332 33222 22333333
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 683 ILDKLMKQGGGYLD----VVMYNTLINV--LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 683 ~~~~~~~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
+-+-+.+.| +.|- ...-|.|.++ +...|+++++.-.-..+.+ +.|++.+|..+.-++....++++|++++.
T Consensus 443 Le~fi~e~g-l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 443 LEDFITEVG-LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHhcC-CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333 6653 3345555544 3467999999877776665 78999999999999999999999999998
Q ss_pred HHHhCCCCCCccchh
Q 003872 757 MMLDSGCTPNHVTDT 771 (790)
Q Consensus 757 ~m~~~~~~p~~~t~~ 771 (790)
++ +||..+++
T Consensus 520 ~L-----P~n~~~~d 529 (549)
T PF07079_consen 520 KL-----PPNERMRD 529 (549)
T ss_pred hC-----CCchhhHH
Confidence 76 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.076 Score=52.84 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.|...|-.|+..|...+.+++..+++++|.. .++--..+|..-+++-....++.....+|.+...... +...|.
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 567788999999999999999999999999984 4555567788888888888999999999999887743 455566
Q ss_pred HHHHHHHhc
Q 003872 276 SLIQVLCVV 284 (790)
Q Consensus 276 ~ll~~~~~~ 284 (790)
..+....+.
T Consensus 114 lYl~YIRr~ 122 (660)
T COG5107 114 LYLEYIRRV 122 (660)
T ss_pred HHHHHHHhh
Confidence 555544443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.6e-05 Score=45.38 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSG 762 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 762 (790)
+|++++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.6e-05 Score=45.38 Aligned_cols=30 Identities=47% Similarity=0.777 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00098 Score=67.76 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLIQVLCVVGKVKDALIVWEELKGS--GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
.+......+++.+....+++.+..++.+.... ....-..|..++|+.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555566666666555543 1112223444666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
||..+.+.|++..|.++..+|...+...+..++..-+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666555544444555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=64.42 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
.+|..+|+...+.+..+.|..+|+++.+.+ ..+..+|...... |...++.+.|.++|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468889999999999999999999998653 2234445444444 33357888899999999988 5778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPD---VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.+.|+.+.|+.+|++.... +.++ ...|..++.-=.+.|+++.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 3332 258999999989999999999999999864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00091 Score=68.00 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKMVQD--GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (790)
+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444455555555444432 11111233345555555555555555555555555555666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003872 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKY 459 (790)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 459 (790)
++.+.+.|++..|.++..+|...+...+..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666655555555554444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=51.94 Aligned_cols=75 Identities=19% Similarity=0.450 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 313 IQGCCKSYRMDDAMKIFSEMQYNGL-IPDTVVYNSLLNGMFKSR--------KVMEACQLFEKMVQDGVRTSCWTHNILI 383 (790)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~l~~~~~~~~~~~~~~~~~~li 383 (790)
|..+...+++.....+|+.++++|+ .|+..+|+.++.+.++.. ++-..+.+|..|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555555444321 1223445555555555555555555555
Q ss_pred HHHH
Q 003872 384 DGLF 387 (790)
Q Consensus 384 ~~~~ 387 (790)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=53.38 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCChHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--INPDVVTFNTLI 739 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~ 739 (790)
++..+...+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|++++|.+.|+.+.... ......++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555666666666666666665431111 12344456666666666666666666666521 111234455666
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 003872 740 EVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666677777776666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00022 Score=55.37 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
.|+++.|+.+++++.+..+..++...+..+..+|.+.|++++|..++++ ...+. .+....-.+..+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677778888877777642122444555577777778888888888777 32211 123444455777777888888877
Q ss_pred HHHH
Q 003872 754 FLKM 757 (790)
Q Consensus 754 ~~~~ 757 (790)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=51.56 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=45.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGL-VPDLHTYNSLIQVLCVVG--------KVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
.|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455777777777777777777 677777777776665532 233445555555555555666666555
Q ss_pred HHHHH
Q 003872 313 IQGCC 317 (790)
Q Consensus 313 i~~~~ 317 (790)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.2 Score=52.82 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhH--------HHHHHHHhccCChHHHHHHHHHHHHCCC
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGY--------NICIHAFGCWGDLHTSLRLFKEMKEKGL 267 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~m~~~g~ 267 (790)
..|.+..|..|.......-.++.|+..|-+...-.|++.--..- .+=+.+ --|.+++|.++|-+|..+.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 56777788888877777777777877776655423332111110 111111 2266777777776665542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 268 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
..+..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2345555666666665555431100 00011235666666666666666666665443211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLF 399 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 399 (790)
.+.++.+..++++.+.+.+.+.+ +....-.+..++.+.|.-++|.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 34444444444444444433332 3334445555566666665555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.012 Score=62.90 Aligned_cols=146 Identities=15% Similarity=0.018 Sum_probs=98.0
Q ss_pred CCCCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 003872 621 GVHPVNYTYNSMMSSFVK--K---GYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKM--------GRADLASTILDK 686 (790)
Q Consensus 621 g~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~ 686 (790)
+.+.+...|...+++... . ++...|..+|+++++. .|+ ...|..+..+|... +++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677888888877543 2 2366888888888886 344 33444333333221 123444555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 687 LMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 687 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
.........+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++..+. .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 4443213445677777766677789999999999999985 478889999999999999999999999998743 666
Q ss_pred ccchhH
Q 003872 767 HVTDTT 772 (790)
Q Consensus 767 ~~t~~~ 772 (790)
.-||..
T Consensus 486 ~pt~~~ 491 (517)
T PRK10153 486 ENTLYW 491 (517)
T ss_pred CchHHH
Confidence 556543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0064 Score=50.97 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCP--TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVL 707 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~ 707 (790)
.+...+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...++.+....+..+ ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444445555555555555555443110 0122334445555555555555555555554321111 123344445555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003872 708 GKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~~ 726 (790)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=50.72 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA 745 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 745 (790)
.+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++..... ..+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34444555566666666666655542 2233445555555566666666666666655532 22234555566666666
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|++++|...++...
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=55.41 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCV-----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 270 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
+-.+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 44555555555543 3455555566666666666666666666666553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0036 Score=49.85 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+..++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 34445555666666666666655542 2233445555555666666666666666655542 22334555566666666
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 711 GRFDEANMLFEQMRT 725 (790)
Q Consensus 711 g~~~~A~~~~~~m~~ 725 (790)
|++++|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.19 Score=50.02 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..+++++..++... . -++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45555666677777777777765552 36777788888888888888776665432 1 23466778888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887777551 1244566777788888777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.013 Score=50.10 Aligned_cols=103 Identities=9% Similarity=-0.001 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+....-.+...+...|++++|..+|+.+.... +-+...|-.|...+-..|++++|+..|....... +.|+..+-.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3345555677777888899999999998887765 4566667777778888899999999999888875 3577788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..++...|+.+.|++.|+..+...+
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 8888899999999999988877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0037 Score=61.70 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCC-
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVV-----VDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---GTSLS- 153 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 153 (790)
-...|......|-..|++++|.+.|......... .-...|......|.+. ++++|++.|++.... ...++
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3466778888888889999999888776442111 1123455555555444 888888888777653 11111
Q ss_pred -HHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 003872 154 -PNVYDSVLVSLVRK-KQLGLAMSILFKLLEA 183 (790)
Q Consensus 154 -~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 183 (790)
...+..+...|... |+++.|.+.|.+..+.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23466666666666 7777777777766554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.087 Score=45.80 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=105.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
-|++..--.|..+....|++.+|...|.+...--..-|....-.+.++....+++..|...++++.+-..-.-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 67777777899999999999999999999988767778888899999999999999999999999886522222233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 703 LINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
+...|...|.+.+|+.-|+..... .|+...-.....-+.+.|+.++|..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 678888999999999999999985 566655555667778888877765444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0086 Score=53.73 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 303 EPNEFTHRIIIQGCCK-----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
..+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 5677788888888764 46677778888899999999999999999987654 2211 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG 425 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 425 (790)
. -.+..-| -.+.+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 108 f-Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 F-QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred H-HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1 1111111 1234556777777777777777777777777776544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0078 Score=54.16 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT--DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
...|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|...+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 4455566666667777777777777776543222 12356666677777777777777777776642 2233445555
Q ss_pred HHHHH-------hcCCHHHHHHHHH
Q 003872 704 INVLG-------KAGRFDEANMLFE 721 (790)
Q Consensus 704 i~~~~-------~~g~~~~A~~~~~ 721 (790)
...+. ..|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 4455554444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=60.02 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDE 715 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 715 (790)
+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHH
Confidence 334445555555555544432 1233444444444555555555555555544432 2233444444444555555555
Q ss_pred HHHHHHHHHh
Q 003872 716 ANMLFEQMRT 725 (790)
Q Consensus 716 A~~~~~~m~~ 725 (790)
|...|++...
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.08 Score=52.28 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSL-S----PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVE 195 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (790)
.|......|...|++++|.+.|.+........ + ...|......|.+. +++.|...+.+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556666677777777777777665431110 1 11233333333333 666665555543
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhcc-CChHHHHHHHHHHHHC----CCCC-
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCW-GDLHTSLRLFKEMKEK----GLVP- 269 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p- 269 (790)
+..|...|++..|-.++.. +...|-.. |+++.|.+.|++..+. | .+
T Consensus 101 -----------~~~y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~ 152 (282)
T PF14938_consen 101 -----------IEIYREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPH 152 (282)
T ss_dssp -----------HHHHHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HH
T ss_pred -----------HHHHHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Chh
Confidence 3345556666555444443 33445555 7777777777766532 2 11
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 270 -DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-----NEF-THRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 270 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
-..++..+...+.+.|++++|.++|+++....... +.. .|-..+-++...|+...|.+.+++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12344555666777777777777777765432111 111 1222233444566777777777776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.025 Score=51.06 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
..+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+++++... +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 3455566666777777777777777765432222 3456666777777777777777777777653 22445555556
Q ss_pred HHHHhcCCHHHHH
Q 003872 705 NVLGKAGRFDEAN 717 (790)
Q Consensus 705 ~~~~~~g~~~~A~ 717 (790)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666543333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.19 Score=48.12 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET---FKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
.....+.+.|++++|...|+.+....+. +..+ ...++.++.+.+++++|...|++..+..+......+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3455567789999999999999886533 2322 24567888899999999999999998754322233444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.15 Score=48.76 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY---NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
++..+-.....+...|++++|.+.|+.+...-. -+.... -.+..++.+.+++++|...+++..+....-...-+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 444444556667788999999999999987642 222332 3456778999999999999999998744333333333
Q ss_pred HHHHHHh--c---------------CC---HHHHHHHHHHHHHhCCCCCCHH------H-----HH-------HHHHHHH
Q 003872 667 VIQGLGK--M---------------GR---ADLASTILDKLMKQGGGYLDVV------M-----YN-------TLINVLG 708 (790)
Q Consensus 667 li~~~~~--~---------------g~---~~~A~~~~~~~~~~~~~~p~~~------~-----~~-------~li~~~~ 708 (790)
.+.+.+. . .| ...|...|+.++++. |+.. . -+ .+..-|.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 1 12 346778888888874 3321 0 01 2344578
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMRT--SGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+.|.+..|..-++.+.+ .+..........++.+|.+.|..++|..+...+.
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88999999999998887 3444456677788899999999999988777664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.25 Score=52.02 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEE 296 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 296 (790)
+....-.+..++.+.|.-++|.+.|-+... | ...++.|...+++.+|.++-+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555556666665555554433211 1 1233445555555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0077 Score=56.68 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFD 714 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 714 (790)
..+.++|++|+..|.++++. .+.|.+-|.-=..+|++.|.++.|.+-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHH
Confidence 45566677777777766665 2335555555566666677766666666666553 232 346666666666666777
Q ss_pred HHHHHHHHHHhcCCCCChHHHH
Q 003872 715 EANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
+|.+.|++.++ +.|+..+|.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 77666666665 466665553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=59.35 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
...+...|+++.|++.|+++++.. +-+...|..+..+|.+.|++++|...++++... .| +...|..+..+|.+.|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 345667899999999999999874 456778888899999999999999999999985 34 5778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhH
Q 003872 747 RLKEAHYFLKMMLDSGCTPNHVTDTT 772 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~~~~p~~~t~~~ 772 (790)
++++|+..+++..+. .|+......
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 999999999999854 677655433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=49.92 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 639 KGYFNQAWGVLNEMGEKFCP-TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN 717 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 717 (790)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ ..+....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35666666666666655331 1333444456666666666666666666 2221 112233334455666666777776
Q ss_pred HHHHH
Q 003872 718 MLFEQ 722 (790)
Q Consensus 718 ~~~~~ 722 (790)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.033 Score=50.30 Aligned_cols=95 Identities=15% Similarity=0.040 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV--NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 4566778888999999999999999999886543222 4678888899999999999999999998863 335666777
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTIL 684 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~ 684 (790)
+...|...|+...+..-+
T Consensus 112 lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHcCChHhHhhCH
Confidence 777888877755544433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.24 Score=43.22 Aligned_cols=104 Identities=10% Similarity=-0.010 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 115 VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
..|+......|..+....|+..+|...|++...--+-.|+...-.+.++....+++..|...++.+.+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--------- 155 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--------- 155 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---------
Confidence 35677777778888888899999999998887644456777788888888888888888888888776432
Q ss_pred ccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 195 ESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
...+..+...+.+.|...|.+.+|+..|+....
T Consensus 156 -a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 156 -AFRSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred -ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 112233344455666666777667666666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.053 Score=58.03 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred hCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHH
Q 003872 148 LGTSLSPNVYDSVLVSLVRK-----KQLGLAMSILFKLLEA 183 (790)
Q Consensus 148 ~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 183 (790)
...+.+...|...+++.... ++...|..+|+++++.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l 371 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS 371 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 34567888888888885443 2367889999999885
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=55.33 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=83.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 676 (790)
.+-+.+.+++.+|+..|...++.. +-|.+.|.--..+|.+.|.++.|++-.+..+.. .| -...|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 456778899999999999999886 667888888888999999999999999888875 23 34588999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
+++|.+.|++.++ +.|+-.+|-.
T Consensus 165 ~~~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhc---cCCCcHHHHH
Confidence 9999999999988 5677666644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.023 Score=48.69 Aligned_cols=94 Identities=9% Similarity=-0.125 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
.-.+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|.......+. ++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 334445556677777777777777666443 4555666666666777777777777777766543 66677777777777
Q ss_pred cCCchHHHHHHHHHHh
Q 003872 459 YGRWDFTERLMKHIRD 474 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~ 474 (790)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0053 Score=45.16 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555542 22444444555555555555555555555554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.1 Score=43.12 Aligned_cols=93 Identities=15% Similarity=0.026 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLG 708 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 708 (790)
+..++-..|+.++|+.+|++....|.... ...+..+...|...|++++|..++++.....+-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455666777777777777766655433 22344455566667777777777776665521100 1111112223455
Q ss_pred hcCCHHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMR 724 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~ 724 (790)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.26 Score=45.80 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 125 LLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
....+...|++.+|.+.|+.+....+ +..+...-.++.++.+.|+++.|...++++++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556666666666666665421 122234555555666666666666666666554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.032 Score=50.17 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP--DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
....|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35566777777778888888888888887653222 23467777788888888888888888877652 3334445555
Q ss_pred HHHHH
Q 003872 313 IQGCC 317 (790)
Q Consensus 313 i~~~~ 317 (790)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.65 Score=46.71 Aligned_cols=176 Identities=17% Similarity=0.093 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCCH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG---VHPVNYTYNSMMSSFVK---KGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
-.++++...++-+|....+++.-.++++.+...- +.-....--.+.-++.+ .|+.++|+.++..+......+++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 4467777788888999999999999999997641 11122222234445666 89999999999997766677889
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-CCHHHHHHHH---HH-HH
Q 003872 662 ATYNVVIQGLGK---------MGRADLASTILDKLMKQGGGYLDV---VMYNTLINVLGKA-GRFDEANMLF---EQ-MR 724 (790)
Q Consensus 662 ~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~-g~~~~A~~~~---~~-m~ 724 (790)
.+|..+...|.. ....++|...|.+..+.. ||. +.+.+|+.+.+.. ..-.+..++- .. ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 999888877632 224788998888877643 443 3344444433321 1122333333 22 22
Q ss_pred hcCC---CCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 725 TSGI---NPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 725 ~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+.|. ..+-..+.+++.++.-.|+.++|.+..++|.+.. +|..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 2332 3355666789999999999999999999999663 4443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=43.14 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=25.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 127 EPCIKSGKIDFAIEILDYMEELGTSLS--PNVYDSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 12333444444444555555444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.046 Score=53.58 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCCCCCH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGE----KFCPT-DIATYNVVIQGLGKMGRADLASTILDKLMK----QGGGYLDV 697 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~ 697 (790)
..|..|...|.-.|+++.|+...+.-+. .|-+. -...+..+.+++.-.|+++.|.+.++.... .+.-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566677777778899988877664322 22111 123556677788888888888888876432 22122233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----c-CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRT----S-GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.-+|.+.|.-..++++|+.++.+=.. . ...-....+.+|..+|...|..++|+.+.+.-++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444566667666778888888765432 1 12224567778889999999999998888776543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=55.96 Aligned_cols=133 Identities=10% Similarity=0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIF----TDMGV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCP-TDI 661 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~----~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~ 661 (790)
..|..|.+.|--.|+++.|+...+.- .+.|- ......+.-|..++.-.|+++.|.+.|+..... |-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777778888887665432 22221 112345667778888889999998888875432 211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
....+|.+.|.-..++++|+.++++-+.. +...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567778888888888998887764322 1112245567778888888888888888776554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0099 Score=43.21 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+...|++++|...|+++.+.. +-+...+..+..++.+.|++++|..+++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666665555532 1134555555555555566666665555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=43.52 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
.+.|++++|+.+|+++.+.. +-+...+..+..+|.+.|++++|.++++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHH
Confidence 35677777777777776652 3356666667777777777777777777776653 55343433
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.15 Score=48.60 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-ChHH
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTSGINP-DVVT 734 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~~~~ 734 (790)
-|...|..|...|...|+.+.|...|.+..+.. .++...+..+..++.... ...++..+|+++... .| |..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 345555555555555555555555555555542 233444444444433321 234455555555543 22 2334
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444445555555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.12 Score=45.03 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHH
Q 003872 665 NVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVT 734 (790)
Q Consensus 665 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 734 (790)
..++..+...|+++.|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555666666666666666653 34555666666666666666666666665542 366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.19 Score=46.46 Aligned_cols=140 Identities=10% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH----
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI---- 668 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---- 668 (790)
+.+.++..+.-.+.+.-...++++.++...+.++.....|++.-.+.||.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777778887776656677777778887788888888888888766553344444444333
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH
Q 003872 669 -QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 669 -~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
..|.-.+++..|...++++.... ..|...-|.=.-+..-.|+..+|.+..+.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23445567777777777777664 234444443333344457788888888888763 44443333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.2 Score=44.47 Aligned_cols=152 Identities=15% Similarity=0.036 Sum_probs=91.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------------
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQ--GCCKSYRMDDAMKIFSEMQYNGLIPDTVVY------------- 344 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------- 344 (790)
++...|+.++|.++--.+.+.. . ...+...++ ++.-.++.+.|...|++....+ |+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3445566666666655555432 1 112222332 2223455666666666655432 332211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh---HHHHH
Q 003872 345 NSLLNGMFKSRKVMEACQLFEKMVQD---GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT---FSIVV 418 (790)
Q Consensus 345 ~~li~~~~~~~~~~~a~~l~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll 418 (790)
..-.+...+.|.+..|.+.|.+.+.. ++.|+...|........+.|+..+|+.-.+..... |... |..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11123356788899999999888764 35566777777777788889999999888877765 4332 22223
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 003872 419 LQLCREGQIEEALRLVEEMEGR 440 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~ 440 (790)
.++...++|++|.+-++...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455577888888888887665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.62 Score=43.32 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV--HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
+..+-.....+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...+++.++....-...-+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 34444566777889999999999999987521 1223345567788999999999999999988763322222222222
Q ss_pred HHHHh-------------cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 003872 669 QGLGK-------------MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF 735 (790)
Q Consensus 669 ~~~~~-------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 735 (790)
.+.+. .+....|...|+.++.+ |=.+.-..+|.+.+..+.+. .- ..-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~---la-~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR---LA-EHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH---HH-HHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH---HH-HHH
Confidence 22221 11233455555555554 33333344444444433321 00 001
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-chhHHHHHHHHHHhh
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-TDTTLDFLGREIDRL 783 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l~~l~~~~~~~ 783 (790)
-.+..-|.+.|.+.-|..-++.+.+. -|+.. ....|..+.+.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHh
Confidence 12445566666666666666666654 33322 234444555444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=41.82 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444332 11333333334444444444444444444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.071 Score=46.60 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCCccchhHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML-----DSGCTPNHVTDTTL 773 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~l 773 (790)
....++..+...|++++|.++++++.... +.+...|..++.+|.+.|+..+|+++++++. +.|+.|+..|-.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 45567778889999999999999999852 4467899999999999999999999999875 46999998775443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.029 Score=41.35 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQM 723 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m 723 (790)
..|++++|+..|++.
T Consensus 15 ~~~~~~~A~~~~~~a 29 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKA 29 (69)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=46.08 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 274 YNSLIQVLCVVGKV--KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 274 ~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
++..=.+|.+..+. -+..--+++++++|-.|+.... ...++-.|++.+|-++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 44444555554442 3334445666777766665432 3344555667777666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.093 Score=50.57 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGY-LDVVMYNTLI 704 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~li 704 (790)
.|...+..+.+.|++++|+..|+.+++...... ...+..+...|...|+++.|...|+.+++..+.. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555677777777777666532111 2345555666666667777766666666553111 1122333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003872 705 NVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.++...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.055 Score=45.15 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
|..++..++.++++.|+++....+++.............. . .......
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~----------------------~----------~~~~spl 48 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG----------------------D----------YPPSSPL 48 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC----------------------c----------cCCCCCC
Confidence 3456777777777777777777777665543221110000 0 1111445
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK-GLVPDLHTYNSLIQVL 281 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 281 (790)
.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 556666666666666666666666665555443 4444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.028 Score=41.40 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG-RFDEANMLFEQMR 724 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 724 (790)
+|..+...+...|++++|+..|++.++.. +-+...|..+..+|...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 33344444444444444444444444432 223333444444444444 3444444444433
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.5 Score=43.30 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhH--HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-
Q 003872 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKG-LVPDLHT--YNSLIQVLCV---VGKVKDALIVWEELKGSGHEPNEFT- 308 (790)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~- 308 (790)
...+...+...+..|+++.|+++++.-++.. +.++..- -..|+.+-.. .-+...|...-.+..+. .||..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchH
Confidence 3455566666666666666666666554432 2233221 1122211111 22345555554444433 455332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD-GVRT-SCWTHNILIDGL 386 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~-~~~~~~~li~~~ 386 (790)
-..-..++.+.|+..++-.+++.+-+....|+ ++. +..+.+.|+. ++.-++...+. .++| +......+..+-
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 22334677788888888888888887744343 332 2223444542 22222222210 1222 344555666777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCcc
Q 003872 387 FRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR-EGQIEEALRLVEEMEGRGFVV 444 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~ 444 (790)
...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+..+.--.|
T Consensus 340 lda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 340 LDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7778887777666655544 4566667666665544 488888888888877653333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.49 Score=45.24 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG---RADLAST 682 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~ 682 (790)
.++....-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+. -++++..+..+..++.... +..++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3444444454444444 778999999999999999999999999999987 3457777777777654432 4678999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 683 ILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 683 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
+|++++... +-|..+..-|...+...|++.+|...|+.|.+. .|....+..+|.
T Consensus 215 ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 215 LLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 999999874 345666666777888999999999999999985 444444555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.7 Score=45.40 Aligned_cols=322 Identities=12% Similarity=0.101 Sum_probs=171.7
Q ss_pred hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc
Q 003872 112 EDDVVVDSETFK-----LLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACND 186 (790)
Q Consensus 112 ~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (790)
+-|++.+..-|. .++..+...+.+..|+++-..+...-.. ...+|.....-+.+..+... ..+++.+.+.-..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccc-hHHHHHHHHHhcc
Confidence 345666655554 4567777888888998888776542111 25677777777777643211 2233333332100
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 003872 187 NTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF---EFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
.......|..+.+.....|+.+-|..+++.=.....- -.+..-+...+.-+.+.|+.+....++-.+.
T Consensus 503 ---------~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 503 ---------KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred ---------cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1234456777777778888888888776643321100 0122234444555555666666666655554
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----HCCCC
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIF-SEMQ----YNGLI 338 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~m~----~~~~~ 338 (790)
.. .+...|... ..+...|..+|.+..+.. +.. .+-..|-...+...+-.+. +... ..|..
T Consensus 574 ~~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~ 638 (829)
T KOG2280|consen 574 NK---LNRSSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRI 638 (829)
T ss_pred HH---HHHHHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccc
Confidence 43 111111111 123345556665544321 111 1122232323332222111 1100 12223
Q ss_pred CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003872 339 PDTVVYNSLLNGMFKSRK----------VMEACQLFEKMVQ-DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGK 407 (790)
Q Consensus 339 p~~~~~~~li~~~~~~~~----------~~~a~~l~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 407 (790)
|+.. ...+.+.+... ..+-+++.+.+.. .|......+.+--+.-+...|+..+|.++-.+..
T Consensus 639 ~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 639 PALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred hhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 3332 23333333332 1122223333322 1323334455666777778888888888766653
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 003872 408 FVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHI 472 (790)
Q Consensus 408 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (790)
.||-..|..=+.++...+++++.+++-+.+. .+.-|...+.+|.+.|+.++|...+.+.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 3588888888899999999998777665543 2455777888999999999988877654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.17 Score=42.19 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 657 CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 657 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
..|+..+..+++.+|+..|++..|+++++...+..+++.+..+|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666555555666666555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.2 Score=48.38 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVV--DSETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDS 159 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 159 (790)
...|...+..+.+.|++++|...|+.+....+.- .+.++..+...|...|++++|...|+.+.+... +..+..+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3457777766677899999999999999875321 146778899999999999999999999997632 223556667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
+...+...|+.+.|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999999999999999885
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.038 Score=41.91 Aligned_cols=61 Identities=34% Similarity=0.457 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTS----GI-NPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|+.+..+|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555566666666665555431 11 111 3455566666666666666666666554
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.5 Score=40.79 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCC
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDD 114 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 114 (790)
..|..-+.++.+.+.+++|..-++.+...+
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD 99 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD 99 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC
Confidence 456677888888888988888777766543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.5 Score=42.80 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
...|++.++...-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHH
Confidence 445666666655555544 456666666666666666667777666654 4556555553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.12 Score=44.53 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
.......-....-+-..|++++|..+|.-+.-.+ .-+..-|..|...+-..+++++|+..|......+. -|+..+-..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~a 111 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchH
Confidence 3344444455566667788888888888776655 34555566666667777888888888887655432 345555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
..+|...|+.+.|+..|+..+.+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC
Confidence 77778888888888888777663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.6 Score=44.09 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=65.9
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCCHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDD---VVVDSETFKLLLEPCIK---SGKIDFAIEILDYMEELGTSLSPN 155 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 155 (790)
.++.+...++-.|....+++.++++++.+.... +.-....--...-++-+ .|+.++|++++..+......++++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344555566667888889999999999988752 11122222334445556 789999999998866666678888
Q ss_pred HHHHHHHHHHhc---------CChhHHHHHHHHHHH
Q 003872 156 VYDSVLVSLVRK---------KQLGLAMSILFKLLE 182 (790)
Q Consensus 156 ~~~~ll~~~~~~---------~~~~~a~~~~~~~~~ 182 (790)
+|..+.+.|-.. ...++|...+.+..+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 888888776431 124555555555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.04 Score=41.77 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQG---G-GYLD-VVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+++.+...|...|++++|+..|++.++.. | -.|+ ..+++.+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555566665555555554321 0 0111 3455556666666666666666666554
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.055 Score=40.35 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|.+.+++++|..+++.+...+ +.+...+......+.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444431 11333333333344444444444444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.7 Score=40.00 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHH
Q 003872 78 PIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVY 157 (790)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (790)
|++.--...|.....+|...++|++|...+....+.. .-+...|. ....++.|.-+.+++.+.. --...|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kls--Evvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHH
Confidence 4444456778888888888899999988887766421 11222222 1233455555555555431 223346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 158 DSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
+....+|..+|.++.|-..+++.-+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHH
Confidence 6666777777877777666665533
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.9 Score=41.83 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhc
Q 003872 636 FVKKGYFNQAWGVLNEMGEK---FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL--INVLGKA 710 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~ 710 (790)
..+.|.+..|.+.|.+.+.. ..+|+...|.....+..+.|+..+|+.-.+...+.. +...+.-+ ..++.-.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHHHHHHHHHHHHHH
Confidence 46778888888888888765 334555566666667778888888888887766532 12222222 2233445
Q ss_pred CCHHHHHHHHHHHHhc
Q 003872 711 GRFDEANMLFEQMRTS 726 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~ 726 (790)
++|++|.+-|++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7788888888877653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.9 Score=41.78 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
+..|.-+...|....|.++..++. .|+..-|...+.+++..+++++-..+... +-.++-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 344555666777777777766664 57777788888888888888776665432 12346677777788888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
|+..+|..++.++ + +..-+..|.+.|++.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8887777777652 1 134456677778887777764444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.7 Score=41.37 Aligned_cols=165 Identities=10% Similarity=0.085 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLN---LACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
..++..++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 445677888888877544 5666666665442 233455556677777789999999999999987 22233455555
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH--HH---HHHHHhcCC------HHHHHHHHHHHHh-cCCCCCh
Q 003872 668 IQGL---GKMGRADLASTILDKLMKQGGGYLDVVMYN--TL---INVLGKAGR------FDEANMLFEQMRT-SGINPDV 732 (790)
Q Consensus 668 i~~~---~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l---i~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~ 732 (790)
+..+ .. .....|...++.++... +.|....|- .+ +......++ ++....+++...+ .+-+.+.
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r-~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNR-FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 5554 33 33456667776666655 555543111 11 111222222 4555555664333 2333343
Q ss_pred HHHHHH-------HHHHhccCCHHHHHHHHHHHH
Q 003872 733 VTFNTL-------IEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 733 ~~~~~l-------~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+-.++ +..+.+.+++++|.++++-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 332222 345777899999999998543
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.4 Score=47.05 Aligned_cols=191 Identities=16% Similarity=0.093 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY------TYNSMMSSFVK----KGYFNQAWGVLNEMGEKFCPTDIA 662 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 662 (790)
.+..++....=.|+-+.+++.+....+.+--..+. .|...+..++. ..+.+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34566677777789999999888876543122222 23333333333 45678899999999987 35655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 003872 663 TYNVV-IQGLGKMGRADLASTILDKLMKQGGG--YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLI 739 (790)
Q Consensus 663 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 739 (790)
.|... .+.+...|++++|.+.|+++...... +.....+--+...+...++|++|...|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 55443 44567889999999999976642101 1233444556677888899999999999999742 11333343333
Q ss_pred -HHHhccCCH-------HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHhhhhh
Q 003872 740 -EVNGKAGRL-------KEAHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLKDQ 786 (790)
Q Consensus 740 -~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~~~~ 786 (790)
.++...|+. ++|.+++.+.....-.--..+...=.+..|...+++.+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 344556777 88999998876321110001112224456666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.84 Score=43.51 Aligned_cols=50 Identities=26% Similarity=0.259 Sum_probs=22.7
Q ss_pred hcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003872 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYME 146 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 146 (790)
..|++.+|..+|......... +......++++|...|+++.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344444444444444443322 23344444444555555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.53 Score=48.04 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI----ATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556667777777888888888888888877775 3442 34777777778888888888888777764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.5 Score=36.14 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.-+..+.+.|+-++-.++...+.+.+ ++++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455566666666666666665433 566666666666777777777777777766666543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.18 E-value=4.1 Score=41.21 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
..+|-.+++...+..-++.|..+|-+..+.| +.+++.+++++|..++. |++..|..+|+--... .+.+..--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456677888888888999999999999888 67888889999887664 7788899999865554 2333333355666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
-+...++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...|..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778889999999999977766 4444 56889999888888999888888777776
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.2 Score=37.52 Aligned_cols=31 Identities=6% Similarity=-0.019 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 293 VWEELKGSGHEPNEFTHRIIIQGCCKSYRMD 323 (790)
Q Consensus 293 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 323 (790)
.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=4 Score=40.52 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAG 711 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 711 (790)
..++.+.|+..++-.+++.+-+....|++ +. +..+.+.|+. ++.-++.......++| +..+..++..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 34577777888888888877776444433 22 2233444542 2222222221111333 4555666667777777
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCC
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA-GRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~ 766 (790)
++..|+.--+.... ..|....|..|.+.-... |+-.++..++-+..+.--.|+
T Consensus 344 e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 344 EFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred chHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 77777766665554 467777777776655444 777777777777765544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.13 Score=38.36 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=29.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
..|.+.+++++|..+++.++.. .+.+...+.....++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL------------DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556666666666665554 233444455555555555555555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.3 Score=44.86 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003872 87 YSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDY 144 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 144 (790)
++..=.+|.+-++.. +...-++++..+|-.|+... +...|+..|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344444454444332 33444566777776676643 34556667777777777753
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=1 Score=39.09 Aligned_cols=89 Identities=11% Similarity=-0.081 Sum_probs=58.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCch
Q 003872 384 DGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWD 463 (790)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 463 (790)
.-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 3345677777777777777665443 4555566666666677777777777766554432 4444555667777777777
Q ss_pred HHHHHHHHHHh
Q 003872 464 FTERLMKHIRD 474 (790)
Q Consensus 464 ~a~~~~~~~~~ 474 (790)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777666
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.69 E-value=8.5 Score=42.41 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH----HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC----IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSL 277 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 277 (790)
....-+..+.+...++-|+.+-..- +. +..+...+ ...+.+.|++++|...|-+-... +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 4455677777788888887765542 22 33333333 33445778999888777665432 122 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVVYNSLLNGMFKSRK 356 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~ 356 (790)
+.-|....++..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++..++.+... .|.. -| ....+..+.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 5556666677777778888888874 455666788889999888887776665544 2221 12 2344555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL 402 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 402 (790)
.++|..+-..... +......++. ..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 6666665554332 3344444433 457888888887665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.60 E-value=3 Score=41.14 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC---
Q 003872 644 QAWGVLNEMGEKFCPTDIATYNVVIQGLGK--MG----RADLASTILDKLMKQGGG--YLDVVMYNTLINVLGKAGR--- 712 (790)
Q Consensus 644 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~--- 712 (790)
+...+++.|.+.|++-+..+|-+..-.... .. ...+|.++++.|.+..++ .++..++.+|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566666666666665555442222211 11 245666777776665422 2444555555433 2222
Q ss_pred -HHHHHHHHHHHHhcCCCCChH-HHHHHHHHHhcc-CC--HHHHHHHHHHHHhCCCCCCccchhHHHHHH
Q 003872 713 -FDEANMLFEQMRTSGINPDVV-TFNTLIEVNGKA-GR--LKEAHYFLKMMLDSGCTPNHVTDTTLDFLG 777 (790)
Q Consensus 713 -~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~ 777 (790)
.+++..+|+.+.+.|+..+.. -+-+-+-++... .. ...+.++++.+.+.|+++....|.+|..|+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244556666666666655432 222222222221 11 335666677777777776666666555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.8 Score=36.85 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=94.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
.+++..+.+.+++|+...+..+++.+.+.|.+.... .+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456677778899999999999999999999865544 4455566666665554443332 2333444444444443
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
=...+..++..+...|++-+|.++.+..... +...-..++.+..+.+|...-..+++-..+.+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 1113566788889999999999999876433 223345678888888888888888887777543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.3 Score=46.50 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=92.1
Q ss_pred HHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 003872 91 FRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL 170 (790)
Q Consensus 91 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (790)
.+...-+++++.+.++.+.-.-. ...+......+++-+.+.|.++.|+++-.. + ..-+....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 44555667888876666411111 112355677788888888888888876533 2 1234556677888
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG 250 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 250 (790)
+.|.++.+ ...+...|..|.....+.|+++-|++.|.+... +..|+-.|...|
T Consensus 335 ~~A~~~a~-----------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g 387 (443)
T PF04053_consen 335 DIALEIAK-----------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTG 387 (443)
T ss_dssp HHHHHHCC-----------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT
T ss_pred HHHHHHHH-----------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhC
Confidence 88776543 234556777777777777777777777776543 556666666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 251 DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297 (790)
Q Consensus 251 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 297 (790)
+.+...++.+.....|- ++....++...|++++..+++.+.
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777777666665532 444555555567777666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.5 Score=45.97 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=96.1
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK 288 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 288 (790)
...-.++++++.++.+.-.--..++ ..-.+.+++.+-+.|..+.|+++...-.. -.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 3455677777655554111001222 33467788888888888888876554332 245666788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 289 DALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 887765443 3667888888888888888888888876543 5566666777888887777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCD 401 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 401 (790)
..|- ++....++.-.|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6652 45555666666777777776644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.6 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.083 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMK 689 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|++.+|..+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344445555555544433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.7 Score=43.61 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
|+.-+.. .+.|++..|...|...++.... ..-....+..|...+...|++++|..+|..+.+..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~---------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPN---------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCC---------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 4444433 3445566666666666654221 11122344455566666666666666666665543333332
Q ss_pred -hhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 237 -YGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 237 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
..+-.|.....+.|+.++|...|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555555556666666666655554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.33 Score=49.47 Aligned_cols=102 Identities=11% Similarity=-0.040 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 658 PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 658 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
+.+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|++++|...+++..+.+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 4567889999999999999999999999999864 553 458899999999999999999999999852 11
Q ss_pred HHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 734 TFNTLIE--VNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 734 ~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
.|..+.. .+..-.+.++..++++.+.+.|..-.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 2322211 11122344577888888887776444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.6 Score=37.71 Aligned_cols=145 Identities=15% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
.......|++..|...|...+.. .+.+...-..++.+|...|+.+.|..++..+.... -........
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~ 207 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQ 207 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHH
Confidence 34556778888888888887775 33344555667777778888888888777766421 111111122
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG-HEPNEFTHRIIIQGCCKS 319 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~ 319 (790)
.-|..+.+.....+...+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.+.. -.-|...-..++..+.-.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 2334444444444444444444432 1144555555666666777777766665554331 123334444555555444
Q ss_pred C
Q 003872 320 Y 320 (790)
Q Consensus 320 ~ 320 (790)
|
T Consensus 286 g 286 (304)
T COG3118 286 G 286 (304)
T ss_pred C
Confidence 4
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.79 E-value=4.4 Score=43.25 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNIL-IDGLFRNGRAEAAYTLFCDLKKKG---KFVDGITFSIVVLQLCREGQIEEAL 431 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~ 431 (790)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+...... .+.....+--+.-.+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344555555555443 2333333222 223334455555555555433210 1112233334444455555566666
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH-HHHhcCCc-------hHHHHHHHHHHh
Q 003872 432 RLVEEMEGRGFVVDLVTISSLLI-GFHKYGRW-------DFTERLMKHIRD 474 (790)
Q Consensus 432 ~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~ 474 (790)
..|..+.+..-- +..+|..+.. ++...|+. ++|..+|.++..
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666555554222 2223332222 22344444 555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.78 E-value=1 Score=42.32 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
++-....++.|.+.|+..|..+|+.|+..+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 344444445555555555555555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.2 Score=36.77 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK 638 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 638 (790)
.++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555544443 2344444445544444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.58 E-value=8.1 Score=38.02 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=63.1
Q ss_pred HhccchHHHHHHHHHHHhcC-CCCCch------hhHHHHHHHHhccCChHHHHHHHHHHHHC--------CCCCCH----
Q 003872 211 RKSDRRSEFKQVFERLKEQK-EFEFDI------YGYNICIHAFGCWGDLHTSLRLFKEMKEK--------GLVPDL---- 271 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~---- 271 (790)
.+.|+.+.|..++.+..... ...|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888887643 334432 12333333333332777776666654332 112222
Q ss_pred -hHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 272 -HTYNSLIQVLCVVGKV---KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 272 -~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.++..++.+|...+.. ++|..+++.+.... +-....+..-++.+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2344445555555543 34444444443331 112334444455555566666666666666654
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.8 Score=41.81 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=110.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH----HHHHHHHHhcCCHH
Q 003872 603 AKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY----NVVIQGLGKMGRAD 678 (790)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~~ 678 (790)
..|.+.+|...++++.+.- +.|...+.-.=++|.-.|+...-...++++.-. ..+|...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3577788888888887653 778888888888999999999888888888754 23344333 34445567889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS---GINPDVVTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
+|++.-++..+.+ +.|...-.+....+-..|++.++.++..+-... +.-.-...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988764 557777788888888899999999986654431 11111233445555666778999999999
Q ss_pred HHHH
Q 003872 756 KMML 759 (790)
Q Consensus 756 ~~m~ 759 (790)
+.=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.5 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 303 EPNEFTHRIIIQGCCK-----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 4455556555555542 34566666778889999999999999999887644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.23 E-value=7.7 Score=38.18 Aligned_cols=131 Identities=16% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCCHH---
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMG-----VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCPTDIA--- 662 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~--- 662 (790)
.++..+....+.++++++.|+...... ......+|..|...|....|+++|.-+..+..+. ++..-..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345566666677888888887664321 1223467888999999999999988777665432 3221111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 --TYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 --~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
....+.-++...|.+..|.+..++..+. |.-..-......+.+.|-..|+.+.|+.-|++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2233445677778888888877776543 31122334455678888899999999988887653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.6 Score=41.29 Aligned_cols=59 Identities=22% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
|..++...|+++.|..+|..+.+..+-.|- +..+--|..+..+.|+.++|..+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444433211111 12333333334444444444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.6 Score=43.59 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEK-----FCPT---------DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV 698 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 698 (790)
.+.|.+.|++..|..-|+++.+. +..+ -..+++.+.-+|.+.+++..|++..++.++.. ++|+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchh
Confidence 45677777888887777775543 1111 12234445555666666666666666666552 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH-HHHHHHHhccCCH-HHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF-NTLIEVNGKAGRL-KEAHYFLKMML 759 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~-~~A~~~~~~m~ 759 (790)
..--=..+|...|+++.|+..|+++++ +.|+.... +-|+..-.+.... +...++|..|.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544455556666666666666666665 24443333 2333222222222 22355555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=8.1 Score=36.38 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=45.0
Q ss_pred HHHHhcCCcchHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 92 RTVCRAGFLEEVPSLLNSMQEDDV--VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 92 ~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
....+.|++++|.+.|+.+....+ +-...+...++-++-+.++++.|+...++..+..+......|-.-|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 344556777777777777766532 22345566666677777777777777777776643222233555555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.2 Score=35.17 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV--HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
++..+-.-.....+.|++++|.+.|+.+...-. +-....--.|+.+|.+.+++++|...+++.++....--.+-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 344444455566778889999988888876521 223344556778888899999999888888887543323344444
Q ss_pred HHHHHh
Q 003872 668 IQGLGK 673 (790)
Q Consensus 668 i~~~~~ 673 (790)
+.|++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.7 Score=34.50 Aligned_cols=89 Identities=11% Similarity=-0.016 Sum_probs=50.5
Q ss_pred HHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHhcCC
Q 003872 93 TVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN---VYDSVLVSLVRKKQ 169 (790)
Q Consensus 93 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~ 169 (790)
+++..|+.+.|++.|......- +-....||.-.+++.-.|+.++|++-+++.++...+.... .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777776666653 2356667777777777777777777776666652222221 13333334444555
Q ss_pred hhHHHHHHHHHHH
Q 003872 170 LGLAMSILFKLLE 182 (790)
Q Consensus 170 ~~~a~~~~~~~~~ 182 (790)
.+.|..-|...-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5555555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.73 E-value=5 Score=33.20 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG 336 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 336 (790)
....++.+...|+-+...+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444445555555555555544322 4444444444455555555555555555544444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.72 E-value=5.9 Score=34.06 Aligned_cols=15 Identities=7% Similarity=0.054 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHHH
Q 003872 250 GDLHTSLRLFKEMKE 264 (790)
Q Consensus 250 g~~~~a~~~~~~m~~ 264 (790)
+.......+++.+..
T Consensus 21 ~~~~~l~~yLe~~~~ 35 (140)
T smart00299 21 NLLEELIPYLESALK 35 (140)
T ss_pred CcHHHHHHHHHHHHc
Confidence 333344444443333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.5 Score=35.00 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=57.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
-.....+.|++++|.+.|+.+..+....+- ....-.++.+|.+.+++++|...+++..+..+.-...-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456789999999999999876544332 3456678889999999999999999998886544445566666665543
Q ss_pred C
Q 003872 285 G 285 (790)
Q Consensus 285 ~ 285 (790)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=9.3 Score=36.00 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
..|+..+. -.+.|++++|.+.|+.+.+..+ +-...+.-.++-++-+.++++.|+..+++.++.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34444333 3467888888888888876532 223445555566666777777777777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=9.6 Score=39.40 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 606 KLNLACKLFEIFTDM-GVHPV-NYTYNSMMSSFVK---------KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
..+.|+.+|.+.... ...|+ ...|..+...+.. ..+..+|.++-+...+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567788899988722 22333 3445444433322 234566788888888775 34788888888878888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCCHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD---VVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A 751 (790)
|+++.|...|++....++. ...+|-.....+..+|+.++|.+.+++..+. .|. ..+....++.|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn--~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD--IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8999999999999886422 2334444444566789999999999997763 443 444555566777766 4777
Q ss_pred HHHHHHHH
Q 003872 752 HYFLKMML 759 (790)
Q Consensus 752 ~~~~~~m~ 759 (790)
+.++-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 77775543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.37 E-value=2 Score=42.98 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDM-----GVH---------PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~-----g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
.-.+.|.+.|++..|..-|+..... +.. .-..++.-|.-.|.+.+++.+|+..-...+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 4567888899999999998885432 111 122445667777889999999999999888874 3466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCC-HHHHHHHHHHHHh
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN-TLINVLGKAGR-FDEANMLFEQMRT 725 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~ 725 (790)
-..--=..+|...|+++.|+..|+++++. .|+-..-. -|+.+--+... .+...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666677888899999999999999885 45444433 33333333332 3344677777765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.7 Score=41.75 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVTFN 736 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 736 (790)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456667778888899999999999988874 56888899999999999999999999888775 68888888887
Q ss_pred HHHHH
Q 003872 737 TLIEV 741 (790)
Q Consensus 737 ~l~~~ 741 (790)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77766
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.18 E-value=27 Score=40.46 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFE--FDIYGYNICIHAFGC-WGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQV 280 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~ 280 (790)
.+.-++..+++.+|.++.++..-..++- -+...+..-+.++.+ .++.+-...++-.+.+..+.-+.+. +.+-...
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~ 762 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQV 762 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccccee
Confidence 4455666777777766665543221111 112222222333333 3445555555555543322111100 0000011
Q ss_pred HHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 003872 281 LCVV----GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY--RMDDAMKIFSEMQY 334 (790)
Q Consensus 281 ~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~ 334 (790)
|... ...+...+.+.....+. .|+ ...-.+|.+|.+.+ .++.++....+...
T Consensus 763 ~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 763 YMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred EEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1111 12333444444433332 455 44556777888777 66777777766664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.9 Score=42.97 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
....+|.+.-+...+.+ +-|+.....+..+..-.++++.|..+|++..... +....+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567788888888887 6788888888887788888999999999988863 234556666666677789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
++..+..+.+.-.....-.++.|+..+ +++|.++|.+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 998876544444555555666777764 778888876543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.90 E-value=20 Score=38.22 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
...|..++..-......+.+..++..+..+ .|.-..-|......-.+.|..+.+..+|++-... ++.....|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 345555555544445556677777777742 3333445566666666778888888888887753 4445555555544
Q ss_pred HHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 280 VLC-VVGKVKDALIVWEELKGS-GHE-PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 280 ~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.++ ..|+.+.....|+..... |.. .+...|...|..-...+++.....++++..+.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 433 356777777777776543 321 23456777777777778888888888888764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.89 E-value=22 Score=38.84 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
.-.+.+--+.-+...|+..+|.++-.+..- ||...|..=+.+++..+++++-+++-+.. ..+.-|....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~PFV 751 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLPFV 751 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchhHH
Confidence 335566667778888999999988776543 68888888899999999998877666542 2355677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+..-+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999998765421 1 467889999999998766543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=25 Score=39.11 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEP----CIKSGKIDFAIEILDYMEELGTSLSPNVYDS 159 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (790)
.-....-+..+.+...++.|..+.+.-. .+..+...+... +.+.|++++|...|-+-... .++ ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~---s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP---SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh---HH
Confidence 3445556777777777777777665432 233344444433 34668888888777554432 111 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhH
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGY 239 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (790)
++.-|........-..+++.+.+.+ ..+...-..|+.+|.+.++.+...+..+...+ ..+ ..-.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~g------------la~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~---~fd~ 466 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKG------------LANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEW---FFDV 466 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcc------------cccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cce---eeeH
Confidence 3444555555555555666666653 34445566677778877777776666554431 111 1123
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 297 (790)
...+..+.+.+-.++|..+-..... ....... .+-..+++++|++.+..+
T Consensus 467 e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 467 ETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3455555566666666655444432 2222222 233456777777777665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=8.3 Score=33.68 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+...|...+.. ++.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-... .
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----------~ 125 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----------S 125 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----------C
Confidence 34455554443 45566777777777777665432222 12333344556677777777777664421 1
Q ss_pred CCCcc-hHHHHH--HHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 197 LPGCV-ACNELL--VALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 197 ~~~~~-~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
.|... ....|- -.+...|.+++.....+.+.. .+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11111 111111 123456777776666666553 333333444556666667777777777777777654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.77 E-value=18 Score=37.60 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=86.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLS-PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
.+|....+..++..-++.-.+..+.. |+ ...|..| +--......++..++++.++.+...-..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~------------ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGK------------ 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhch------------
Confidence 34444456666666666666666532 22 1222222 2223455788888888887765321100
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CCHhHHHHHHHHH
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-PDLHTYNSLIQVL 281 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~ 281 (790)
.......-..++.+.. ....+-..+-..+..++-+.|+.++|.+.+++|.+.... -.......|+.++
T Consensus 237 ----------s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 237 ----------SQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred ----------hhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 0000000011111111 222222333345666667788888888888888764222 1334667788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN-EFTHRIII 313 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li 313 (790)
...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 306 Lelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 306 LELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 888888888888888754432222 33455433
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.66 E-value=18 Score=37.74 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD--VVTFNTLIEV 741 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~ 741 (790)
.+..++.+.|+.++|.+.+.++++..+..-+......|+.++...+.+.++..++.+-.+.. .|. ..+|+..+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHH
Confidence 45556678899999999999998764222244466678999999999999999988865432 233 3455554433
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.59 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.++..+...|.+.|++++|+++|+++++..+ .++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 3566777888888888888888888887652 355555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.59 E-value=10 Score=37.34 Aligned_cols=167 Identities=13% Similarity=-0.023 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHhccCChHHHHHHHHHHHHCC-----CCCCHhH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD---IYGYNICIHAFGCWGDLHTSLRLFKEMKEKG-----LVPDLHT 273 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~ 273 (790)
.|..+..++.+.-++.+++.+-..-....|..|. -....++..++...+.++++++.|+...... .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555666666666555554444442 1233345566666777888888887765431 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELKG----SGHEPNEFTHRI-----IIQGCCKSYRMDDAMKIFSEMQY----NGLIP- 339 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~----~~~~p- 339 (790)
|..|-..|.+..|+++|.-...+..+ .++..-..-|.. |.-++...|.+..|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888888877766554432 222211122222 22345566777777777766543 23111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
-......+.+.|-..|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233455666777788888777766543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.1 Score=32.52 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=54.6
Q ss_pred chhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
+.+.|.+--..+......+ +..+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +......|..+
T Consensus 7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~ 85 (108)
T PF02284_consen 7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYI 85 (108)
T ss_dssp -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHH
T ss_pred CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHH
Confidence 4556666666677666555 56777888888899999999999999999999999999999988765 22223366666
Q ss_pred HHH
Q 003872 161 LVS 163 (790)
Q Consensus 161 l~~ 163 (790)
++-
T Consensus 86 lqE 88 (108)
T PF02284_consen 86 LQE 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.7 Score=33.18 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 003872 635 SFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGR 712 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~ 712 (790)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-+++.++..|.+-- ...|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 355667777777777777665 3346667777777777777777777777777766432211 1122222334556677
Q ss_pred HHHHHHHHHHHHhcC
Q 003872 713 FDEANMLFEQMRTSG 727 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g 727 (790)
-+.|+.=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.02 E-value=24 Score=37.58 Aligned_cols=100 Identities=9% Similarity=-0.052 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
+..+|..-+.--...|+.+.+.-+++..... +..-...|-..+.-....|+.+.|..++....+--.+-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666777777777777766543 111122233344444445777777777766655433322222221222
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 003872 455 GFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~ 475 (790)
..-..|+++.|..+++.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh
Confidence 233456888888888877664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.98 E-value=5.9 Score=33.74 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.++++++..++..|.-. .|+ ..++...+ +...|++++|..+|.++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555442 222 22222222 44555555555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.67 E-value=11 Score=32.98 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..|.+++.....+.+...|-+.....-..|.-+-.+.|++..|..+|+.+-+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4445555444444444333233333334444444555555555555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.8 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDM 620 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 620 (790)
+..+...|...|++++|.++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.53 E-value=18 Score=35.31 Aligned_cols=47 Identities=13% Similarity=-0.003 Sum_probs=21.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 248 CWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295 (790)
Q Consensus 248 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (790)
..|-+++|.+.-++..+.+. .|.-...++.+.+-..|+..++.+.+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HhccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 34555555555444444321 133344444444444555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=26 Score=36.50 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.+.....+++..+...-...-..-+..+|...| .+-..|-.++..|..+ ..++-..+|+++.+..+. |.+.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566788888888888888888888888876 4667888899999888 678889999998887443 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLD------VVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEV 741 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 741 (790)
.-|.+ ++.+.+..+|.++..+- -|- ...|.-++..- ..+.+...++...... .|...-.+.+.-+-.-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 65655 88999999999988773 331 23565555422 3467778888777775 5555556667777788
Q ss_pred HhccCCHHHHHHHHHHHHhC
Q 003872 742 NGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~~ 761 (790)
|....+|.+|++++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 88899999999999988765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.13 E-value=16 Score=34.04 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC
Q 003872 155 NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF 234 (790)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (790)
..|.....+|-...++++|...+.+..+.... +. +.+.....++.|.-+.+++.+ ++-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEn------------nr-------slfhAAKayEqaamLake~~k---lsE 89 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------------NR-------SLFHAAKAYEQAAMLAKELSK---LSE 89 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------------cc-------cHHHHHHHHHHHHHHHHHHHH---hHH
Confidence 34666667777888888888877776543211 11 112223344555555555544 222
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCC---HHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG---SGHEPN---EFT 308 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~---~~~ 308 (790)
-+..|+.-...|...|..+.|--.+++..+. ....++++|+++|.+... .+ ..+ ...
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~-dr~~ma~el 152 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEED-DRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 3445566666777777777766666554332 122344555555554321 11 011 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYN----GLIPDT-VVYNSLLNGMFKSRKVMEACQLFEKMVQDG---VRTSCWTHN 380 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~ 380 (790)
+...-+.+.+...+++|-..+.+-... .--++. ..|...|-.+....++..|...++.-.+.+ -.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 333334455555555544333322100 001111 223444444555556666666666643321 112334444
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 003872 381 ILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~ 398 (790)
.|+.+| ..|+.+.+.++
T Consensus 233 nLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHh-ccCCHHHHHHH
Confidence 445444 34444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.13 E-value=3 Score=40.14 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCCHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE-----KFCPTDIATYN 665 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 665 (790)
..++..++..+..+++.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3445566677777777777777777776665 55667777777777777777777777776654 35566555444
Q ss_pred HHH
Q 003872 666 VVI 668 (790)
Q Consensus 666 ~li 668 (790)
...
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.62 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.70 E-value=5.4 Score=36.08 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=54.3
Q ss_pred chHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003872 101 EEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---GTSLSPNVYDSVLVSLVRKKQLGLAM 174 (790)
Q Consensus 101 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 174 (790)
+.|.+.|-.+...+..-++.....|...|. ..+.+++++++.+..+. +-.++++.+.+|+..+-+.++++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445566666666655446666666666665 67899999999888875 33678999999999999999988874
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.82 E-value=14 Score=32.18 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYT-YNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
..-...++.+++..++..+.-. .|.... -..-...+...|++.+|..+|+++...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3334456666666666666544 233222 122233455666677777776666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.73 E-value=3.5 Score=31.88 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHh
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDR 782 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~ 782 (790)
+.=++++-++.+....+.|++.+..+.++||.|.+++.-|+++++..+.+ +..+...|.. |.-+-..+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeikp~l~E 92 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIKPTLKE 92 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHhHHHHH
Confidence 34467777777888889999999999999999999999999999988743 2223334543 3444444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.1 Score=27.56 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+|+.|..+|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888754
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.41 E-value=7.1 Score=30.28 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhcCC--cchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGF--LEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~--~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+.|.+--..+...-+ .=++.+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +......|..++.
T Consensus 6 EeF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 6 EEFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 445555455554443 2356777788888889999999999999999999999999999987743 2224456666554
Q ss_pred H
Q 003872 163 S 163 (790)
Q Consensus 163 ~ 163 (790)
-
T Consensus 85 e 85 (103)
T cd00923 85 E 85 (103)
T ss_pred H
Confidence 3
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.29 E-value=10 Score=29.78 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
+..+-+..+....+.|++.+..+.+.+|.|.+++.-|+++++..+.+ +.+....|.. +.-+-..+++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkPtl~EL 96 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKPTLEEL 96 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhhHHHHh
Confidence 56677777777889999999999999999999999999999999754 2333325543 34455544443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.17 E-value=20 Score=32.67 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=105.0
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSS--FVKKGYFNQAWGVL 649 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~ 649 (790)
+..+++-.-.....+.|.-+.+||-+.--+...|+++.|.+.|+...+.... .-|..+-++ +.-.|++.-|.+-+
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHH
Confidence 4444555555555667788999999999999999999999999999876422 334333333 33468888888777
Q ss_pred HHHhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 650 NEMGEKFC-PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 650 ~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
-..-+... .|=...|--++ ...-++.+|..-+.+=.+. ...+..-|+.+--.+ |.+. ...+++++.+. -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL---gkiS-~e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL---GKIS-EETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH---hhcc-HHHHHHHHHhh-c
Confidence 76655422 12222222222 2334667776554332221 223344444332222 2221 23344444432 1
Q ss_pred CCC-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 729 NPD-------VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 729 ~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..+ ..||--|.+-+...|+.++|..+|+-....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 112 357778888999999999999999988754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.02 E-value=37 Score=35.46 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=114.8
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+....-+++.+++.+-...-+..+-.+|...| -+-..|..+++.|... ..+.-..+++++++..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666778888888888888888888898876 3677888999999888 678888999999887542 333344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..| ..++.+.+...|.+++....+...... -...|.-|... -..+.+....+...+....|...-...+.-
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~------i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFIPRRQNAA------IKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhcchhhhhh------HHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 444 448888888888888776322110000 00112222211 134455555555555555555555556666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
+-.-|....++++|++++..+.+..-. |...-..++.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 666677777777777777776665322 4444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.92 E-value=30 Score=34.26 Aligned_cols=127 Identities=14% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC---
Q 003872 254 TSLRLFKEMKEKGLVPDLHTYNSLIQVLCV--VG----KVKDALIVWEELKGSGH---EPNEFTHRIIIQGCCKSYR--- 321 (790)
Q Consensus 254 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~--- 321 (790)
....+++.|.+.|+.-+..+|-+..-.... .. ...++..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555454444432222222 11 13455566666655421 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003872 322 -MDDAMKIFSEMQYNGLIPDTV--VYNSLLNGMFKSRK--VMEACQLFEKMVQDGVRTSCWTHNIL 382 (790)
Q Consensus 322 -~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~--~~~a~~l~~~~~~~~~~~~~~~~~~l 382 (790)
.+.+..+|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234555555555555443322 12222221111111 33555666666666666555554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.12 E-value=10 Score=34.09 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDG--ITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+++.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444445555555555555444443222211 12333444444455555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.82 E-value=43 Score=34.96 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003872 623 HPVNYTY-NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK--MGRADLASTILDKLMKQGGGYLDVVM 699 (790)
Q Consensus 623 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~ 699 (790)
.|+..++ +.+++.+...|-..+|..++..+... .+|+...|.-+|..-.. .-+...+..+++.|....| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555554 45677777788888888888888776 56677777766653221 1236777888888888765 56666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
|--.+..-...|..+.+-.++.++..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77766666677888888777776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.72 E-value=71 Score=37.36 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 003872 103 VPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KIDFAIEILDYMEE 147 (790)
Q Consensus 103 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 147 (790)
.-+++.....+. .|+ .-...+|.+|++.+ ..+.|++...++..
T Consensus 776 vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 776 VCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 334444444443 334 45567888888876 56666666665554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.66 E-value=55 Score=36.03 Aligned_cols=184 Identities=17% Similarity=0.096 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHH-HhccCChHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhcC--
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHA-FGCWGDLHTSLRLFKEMKE-------KGLVPDLHTYNSLIQVLCVVG-- 285 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 285 (790)
...+...++...+.....+-...-.....+ +....|.+.|+.+|+.+.+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777776632222222222222233 4566788888888888876 44 3334445555555532
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHH
Q 003872 286 ---KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK-SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF--KSRKVME 359 (790)
Q Consensus 286 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~ 359 (790)
+.+.|+.++....+.| .|+....-..+..... ..+...|.++|....+.|.. ....+..++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 5566777777777766 4454443333322222 24566777777777776632 2221211111111 2345677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 360 ACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG 406 (790)
Q Consensus 360 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 406 (790)
|..+++...+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777777766 2221111122222222 55555555554444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.58 E-value=7.1 Score=37.62 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
.++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555554444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.27 E-value=28 Score=32.29 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
.|++.+|+.++++.....+..+..-|.
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 355666666666665554444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.00 E-value=0.054 Score=47.15 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 90 IFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 90 l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444555555555544443333344444455555555444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.82 E-value=14 Score=33.34 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455666677777777777777777666533322 234455666666677777776666665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.22 E-value=50 Score=33.34 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 003872 643 NQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA---GRFDEANML 719 (790)
Q Consensus 643 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~ 719 (790)
+.-+.+++++++. .+.+...+..++..+.+..+.+...+-|+++.... +-+...|..+++..... -.+++...+
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3445666666665 23455566666666666666777777777776653 23556666666554431 235555555
Q ss_pred HHHHHh------cCC------CCC-----hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCccc
Q 003872 720 FEQMRT------SGI------NPD-----VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGC-TPNHVT 769 (790)
Q Consensus 720 ~~~m~~------~g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t 769 (790)
|.+..+ .|. .++ ..++.-+..-+..+|..+.|+.+++.+.+.++ .|....
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~ 192 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLS 192 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccc
Confidence 554442 111 000 11222333345557777888888877777654 444433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.09 E-value=78 Score=35.49 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCCCc--hhhHHHHHHHHh-ccCChHHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHHhcCCHHH
Q 003872 218 EFKQVFERLKEQKEFEFD--IYGYNICIHAFG-CWGDLHTSLRLFKEMKEKGLVPDLH-----TYNSLIQVLCVVGKVKD 289 (790)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~ 289 (790)
.|+..++.+.+...++|. ..++-.+...+. ...+++.|...+.+....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 355666666644556554 345555666665 5688999999998775432222221 1223456666666555
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 003872 290 ALIVWEELKGS----GHEPNEFTHRII-IQGCCKSYRMDDAMKIFSEMQYNG---LIPDTVVYNSLLNGMF--KSRKVME 359 (790)
Q Consensus 290 a~~~~~~~~~~----g~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~~~~~~ 359 (790)
|...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. ..+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888776543 122233344444 333333478999999998876432 2334444555555544 3455666
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003872 360 ACQLFEKMVQDG---------VRTSCWTHNILIDGLF--RNGRAEAAYTLFCDLK 403 (790)
Q Consensus 360 a~~l~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~ 403 (790)
+.+.+..+.... -.|...+|..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666663321 1245566777776554 4677666666555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.68 E-value=44 Score=32.34 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred CCHhHHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLI-QVLCVVGK-VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll-~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
|+...++.|. +.+.+.|= ..-|.++|+..... ...+.++.++.+.+.-+.-+++| +|+..+-..
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~ 228 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEH 228 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHH
Confidence 3455555554 34444442 45677777776532 23455666665544444443333 566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT----FSIVVLQLC 422 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~ 422 (790)
+...+...|--+-..-.-.++.. | .-...-..|..-..+...+++.....++-.+..-.|+... |+.++++-
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav- 304 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV- 304 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH-
Confidence 66555554432221111111100 0 0011122333444455567777666655444444456544 55555543
Q ss_pred HcCCHHHHHHHH-HHHHhCCCccCHHHHHHHHHHHHhcCCchHHH
Q 003872 423 REGQIEEALRLV-EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTE 466 (790)
Q Consensus 423 ~~g~~~~a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 466 (790)
.|.+-.++. ++.++ ...+|..|+.+++..|+.+...
T Consensus 305 ---eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 305 ---EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ---hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 332222222 22222 3557889999999999876443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.2 Score=25.85 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A 716 (790)
...|+.+..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.25 E-value=90 Score=34.89 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCCCCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH
Q 003872 42 PRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET 121 (790)
Q Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 121 (790)
..|.|-+.+.|...++.....+. .|... .-........| ++|--|.|+|.+++|.++....... .......
T Consensus 77 ~gg~p~~~~~V~afv~~~~~~~~------~~~~~-~l~~~~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~ 147 (613)
T PF04097_consen 77 LGGVPSTYNKVRAFVNVRLKRPG------AWTDS-GLEIVNGDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERS 147 (613)
T ss_dssp --SSS-HHHHHHHHHHCTTBESS------CBSST-T--EETTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTH
T ss_pred ccCCCCcHHHHHHHHHHHhcccC------CCccc-ccccCCCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHH
Confidence 34556666677777764332211 11100 00011233445 4677889999999999999555543 2334567
Q ss_pred HHHHHHHHHhcCC-------hHHHHHHHHHHHHh
Q 003872 122 FKLLLEPCIKSGK-------IDFAIEILDYMEEL 148 (790)
Q Consensus 122 ~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 148 (790)
|...+..|....+ -++...-|++..+.
T Consensus 148 f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 148 FPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 7788888876532 23455555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.04 E-value=51 Score=31.93 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=28.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-GHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 268 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
.++..+...++..++..+++.+..++++..... +...|...|..+|+.....|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 344444445555555555555555555444332 3334444555555555555554433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.50 E-value=14 Score=39.06 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544432 344456666666666666666665554432 333444444455544444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
.+-....+.|. .|...-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence 44444444331 1222334445555555555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.38 E-value=14 Score=35.81 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=59.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG---HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV 342 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 342 (790)
|......+...++..-....+++.+...+-++...- ..++. +-.+.++.+. .-+.++++.++..=+..|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 333344444444444444556666666665554321 11111 1112223222 235667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
+++.+|+.+.+.+++..|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888877777777666654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.9 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|..+...+...|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.40 E-value=3.7 Score=25.94 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777888888888888888887765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.10 E-value=46 Score=30.09 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..+...+++++|...++..+....+ ......+--.|.+.....|.+++|...++...+ .++ .......
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~D---------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w--~~~~~el 164 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKD---------ENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESW--AAIVAEL 164 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchh---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccH--HHHHHHH
Confidence 4455666666666666655432100 000011122234444555556666555555443 111 1112223
Q ss_pred HHHHHhccCChHHHHHHHHHHHHC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
-.+.+...|+-++|..-|.+..+.
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 344555556666666666665555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 6e-22
Identities = 37/261 (14%), Positives = 83/261 (31%), Gaps = 9/261 (3%)
Query: 483 KWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGS 542
+W +E ++++ + + E +L +E + G
Sbjct: 25 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPR------LLSKQMAGC 78
Query: 543 QLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFL 602
+ + SP+ ++LA ++ L + + + F L
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 603 AKGKLNLACKLFEIFTDM---GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT 659
+L LA L + YN++M + ++G F + VL + +
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANML 719
D+ +Y +Q +G+ + + M Q G L + L++ +A + +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 720 FEQMRTSGINPDVVTFNTLIE 740
P V + L+
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 2e-18
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 4/176 (2%)
Query: 608 NLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667
+A L + P ++ K + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 668 IQGLGKMGRADLASTILDKL--MKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725
+ + LA +L +Q L + MYN ++ + G F E + ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 726 SGINPDVVTFNTLIEVNGKAGRLKEA--HYFLKMMLDSGCTPNHVTDTTLDFLGRE 779
+G+ PD++++ ++ G+ + +M + T L R
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 6e-15
Identities = 48/368 (13%), Positives = 101/368 (27%), Gaps = 39/368 (10%)
Query: 145 MEELGTSLSPNVYDSVLVSLVRKKQLGLAM--SILFKLLEACNDNTADNSVVESLPGCVA 202
M+ L L +L R+ Q+ + + LE C ++ E L
Sbjct: 41 MQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLAR--- 97
Query: 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL---HTSLRLF 259
L+ + +Q Q + L H L +
Sbjct: 98 ----LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 260 KEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS 319
++K + L YN+++ G K+ + V +K +G P+ ++ +Q +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 320 YRMDDAM-KIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWT 378
+ + + +M GL + LL+ ++ + ++
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438
+ L+ ++ + L LK + QL E + VE+
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK--------QLHMELASRVCVVSVEKPT 325
Query: 439 GRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSK 498
K R + + L + +R+ +
Sbjct: 326 LP------SKEVKHARKTLKTLRDQWEKALCRALRE------------TKNRLEREVYEG 367
Query: 499 RKDYTPMF 506
R P
Sbjct: 368 RFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 2e-04
Identities = 39/312 (12%), Positives = 89/312 (28%), Gaps = 15/312 (4%)
Query: 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE-ILDY 144
Y+ + R G +E+ +L +++ + D ++ L+ + + IE L+
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 145 MEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACN 204
M + G ++ +VL+S + + A+ + + + L A +
Sbjct: 227 MSQEGLK-LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 205 ELLVALRKSDRRSEFKQVFERLKE--------QKEFEFDIYGYNICIHAFGCWGDLHTS- 255
+ + + +FE+ E HA L
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345
Query: 256 ----LRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRI 311
R +E K + SL LC++ + + ++ + L+ + FT
Sbjct: 346 EKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLA 405
Query: 312 IIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371
R + S L + + +
Sbjct: 406 RELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEA 465
Query: 372 VRTSCWTHNILI 383
+R W + +
Sbjct: 466 LREQPWPLPVQM 477
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 100/698 (14%), Positives = 193/698 (27%), Gaps = 231/698 (33%)
Query: 117 VDSET------FKLLLEPCIKSGKIDFAI-EILDYMEELGTSLSPNVYDSVLVSLVRKKQ 169
+D ET +K +L + +F ++ D + + LS D +++S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVSG 63
Query: 170 LGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE- 228
LF L + + V E L R +K + +K
Sbjct: 64 TLR----LFWTLLSKQEEMVQKFVEEVL------------------RINYKFLMSPIKTE 101
Query: 229 --QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC---- 282
Q +Y L+ ++F K V L Y L Q L
Sbjct: 102 QRQPSMMTRMYIE--------QRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRP 149
Query: 283 ---VV-------GK---VKDAL------------IVWEELKGSGHEPNEFTHRIIIQGCC 317
V+ GK D I W L + + P ++Q
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVL--EMLQKLL 206
Query: 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSL---LNGMFKSRKVMEACQLFEKMVQDGVRT 374
Y++D S+ N I + +S+ L + KS+ L +V V
Sbjct: 207 --YQIDPNWTSRSDHSSN--IKLRI--HSIQAELRRLLKSKPYENC--L---LVLLNV-- 253
Query: 375 SCWTHNILIDGLFRNGRAEAAYTLFCDL------KKKGKFVDGITFSIVVLQLCREG--- 425
A+ L C + K+ F+ T + + L
Sbjct: 254 --QNAKAW-----------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 426 -QIEEALRLVEEMEGRGFVVDL----VTISSLLIGF------HKYGRWDFTERL----MK 470
+++ L + DL +T + + WD + + +
Sbjct: 301 DEVKSLLLKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 471 HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPM--FPYKGDLSE-IMSLIGSTNLETD 527
I + L+VL+ A RK + + FP + ++SLI
Sbjct: 357 TIIE--SSLNVLE-----PAEY------RKMFDRLSVFPPSAHIPTILLSLI-------- 395
Query: 528 ANLGSGEGDAKDEGSQLTNSDEWSSSPY------MDKLADQ--VKSDCHSSQ--LFSLAR 577
W ++KL V+ S + S+
Sbjct: 396 ----------------------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 578 GLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFE---IFTDMGVHPVNYTYNSMMS 634
L+V+ + +V+ + + + ++ +G H N + M+
Sbjct: 434 ELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 635 SFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY 694
F + + + + + +K A + +T+ L Y
Sbjct: 492 LF-RMVFLDFRF-----LEQKIRHDSTAWN----------ASGSILNTLQQ-LKF----Y 530
Query: 695 LDVV---------MYNTLINVLGKAG----RFDEANML 719
+ + N +++ L K ++L
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 70/512 (13%), Positives = 147/512 (28%), Gaps = 152/512 (29%)
Query: 80 YKHTACTYSHIF--RTVCRAGFLEEVPSLLNSMQ-EDDVVVD-----------SET---F 122
+ + +F V R ++ L ++ +V++D + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 123 KLLLEPC-----IKSGKIDFAIEILDYMEELGTSLSPNV-------------YDSV---L 161
K+ + + + +L+ +++L + PN S+ L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 162 VSLVRKKQLGLAMSIL-----FKLLEACNDN------TADNSVVESLPGCVACNELLVAL 210
L++ K + +L K A N + T V + L + L
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 211 RKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPD 270
+ E K + + + + + + L +
Sbjct: 295 SMTLTPDEVKSLLLK---------------------------------YLDCRPQDLPRE 321
Query: 271 LHTYNSLIQVLCVVGK-VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS-----YR-MD 323
+ T N L ++ + ++D L W+ K + + T II+ YR M
Sbjct: 322 VLTTNPR--RLSIIAESIRDGLATWDNWKHVNCD--KLTT--IIESSLNVLEPAEYRKMF 375
Query: 324 DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEK---MVQDGVRTSCWTHN 380
D + +F + IP ++ SL+ VM K + + ++ +
Sbjct: 376 DRLSVFPP---SAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 381 ILIDGLFRNGRAEAA--------YTL---FCDLKKKGKFVDGITFSIVVLQLCREGQIEE 429
I ++ L E A Y + F ++D +S + L E
Sbjct: 431 IYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 430 A---------LRLVEE--------MEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHI 472
R +E+ G +++ L Y +I
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------TLQQLKFYK---------PYI 534
Query: 473 RDGN-----LVLDVLKWKADVEATMKSRKSKR 499
D + LV +L + +E + K
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 89/329 (27%)
Query: 1 MRHGRKTLSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNS 60
+ H TL+P L LL ++ ++ L PR + + P L ++ ++
Sbjct: 291 LDHHSMTLTPD---EVKSL----LLKYLDCRPQD-----L-PREVLTTNPRRLSIIAESI 337
Query: 61 LDSSKKLDFFRWCSSLRPIYKHTAC-TYSHIFRTVCRAGFLEEV-PSLLNSMQED----- 113
D D +KH C + I + L + P+ M +
Sbjct: 338 RDGLATWDN----------WKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFP 382
Query: 114 -DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172
+ + L+ IKS +++ + +L SLV K+
Sbjct: 383 PSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKY-----------SLVEKQPKES 424
Query: 173 AMSI---LFKLLEACNDNTA-DNSVVES--LPGCVACNEL----------------LVAL 210
+SI +L + A S+V+ +P ++L L +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 211 RKSDRRSEFKQVFERLK--EQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFK------EM 262
+R + F+ VF + EQK I + +A G + L+ +K +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 263 KEKGLVPDLHTYNSLIQVLCVVGKVKDAL 291
K + LV + + I+ + K D L
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 10/176 (5%)
Query: 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSS-FVKKGYFNQAWGVLNEM 652
V F + + + + V N T+ M +S + + A L++
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ- 126
Query: 653 GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR 712
+ + +Q L K+ R DLA L K+ Q + +++ +
Sbjct: 127 -----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
Query: 713 FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768
+A +F++M +P ++ N + GR + A L+ LD H
Sbjct: 182 LQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP 234
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 48/265 (18%), Positives = 84/265 (31%), Gaps = 32/265 (12%)
Query: 219 FKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEM----KEKGLVPD-LHT 273
K E L + I ++ C G+L SL L ++ ++ + L +
Sbjct: 37 AKLALEELPPGWFYS-RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95
Query: 274 YNSLIQVLCVVGKVKDA-------LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAM 326
++L G ++ A + E +EF RI Q R+D+A
Sbjct: 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155
Query: 327 KIFS---EMQYNGLIPDTVVYNSLLNGMFKSR-KVMEACQLF---EKMVQDGVRTSCWT- 378
E+ + + ++L +R + A E ++ +G S W
Sbjct: 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215
Query: 379 --HNILIDGLFRNGRAEAAYTLFCDLKK----KGKFVDGITFSIVVLQLCREGQIEEAL- 431
+ + + G AA K F+ G +I Q+ G+ E A
Sbjct: 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL-GEFEPAEI 274
Query: 432 ---RLVEEMEGRGFVVDLVTISSLL 453
L E + DL LL
Sbjct: 275 VLEELNENARSLRLMSDLNRNLLLL 299
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.98 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.86 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.78 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.61 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.6 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.41 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.35 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.32 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.31 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.13 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.1 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.0 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.95 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.9 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.79 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.76 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.73 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.6 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.28 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.5 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.59 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.81 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.47 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.26 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.1 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.58 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.27 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.77 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.15 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.38 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.54 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=348.23 Aligned_cols=495 Identities=11% Similarity=-0.017 Sum_probs=340.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
++...|+.++..|.+.|++++|+.+|+++.... |+..++..++.+|.+.|++++|..+|+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-------------Y 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-------------G
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-------------c
Confidence 456777888888888888888888888777543 5667777777888888888888777776543 3
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+++..+++.++.+|.+.|++++|.++|+++.... .. ..++.+.++ ...|..++..+|+.
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR-----KD-----EKNANKLLM-----------QDGGIKLEASMCYL 205 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------C-----------CCSSCCHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc-----cc-----ccccccccc-----------cccccchhHHHHHH
Confidence 4556677777777777777777777776422111 00 000000000 01233445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA--MKI-FSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a--~~~-~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
++.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 6666666666666666666665543 22344444444333322221111 111 3444444334445556666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRL 433 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 433 (790)
.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|..+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777777654 467777777778888888888888888777765433 666777778888888888888888
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 434 VEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 434 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------- 402 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------------------------------------- 402 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------------------
Confidence 88777543 336777777888888888888888888777651
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
.+.+...
T Consensus 403 -------------------------------------------------------------------------~~~~~~~ 409 (597)
T 2xpi_A 403 -------------------------------------------------------------------------DPQFGPA 409 (597)
T ss_dssp -------------------------------------------------------------------------CTTCHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 1224566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
|+.++..|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 7788888888888888888888887765 5577888888888888888888888888888763 4477888888888888
Q ss_pred cCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 674 MGRADLASTILDKLMKQG---GGYLD--VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 888888888888887762 25676 7788888888888888888888888888753 33678888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcc
Q 003872 749 KEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~ 768 (790)
++|.++++++.+. .|+..
T Consensus 567 ~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 567 GLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHhc--CCCCh
Confidence 8888888888864 55543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=345.87 Aligned_cols=494 Identities=12% Similarity=-0.006 Sum_probs=383.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHH
Q 003872 132 SGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALR 211 (790)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (790)
.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++..|.
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-------------~~p~~~~~~~l~~~~~ 128 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-------------ITGNPNDAFWLAQVYC 128 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHCCHHHHHHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-------------hCCCchHHHHHHHHHH
Confidence 344444444444332 25677889999999999999999999998876 3455677788888888
Q ss_pred hccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003872 212 KSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
+.|++++|..+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++. |+.. ....+...+
T Consensus 129 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~------ 190 (597)
T 2xpi_A 129 CTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLL------ 190 (597)
T ss_dssp HTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------------
T ss_pred HcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccc------
Confidence 88888888888887753 35677888888888888888888888887522 1110 001111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHH
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEA--CQL-FEKMV 368 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a--~~l-~~~~~ 368 (790)
-...+.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+.+ ..+ +..+.
T Consensus 191 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 191 -----MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp -----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred -----ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 11234566789999999999999999999999999998642 2455666666555443332222 222 55666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHH
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVT 448 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 448 (790)
..+..+...+|+.++..|.+.|++++|.++|+++.+. .++..++..++..|.+.|++++|..+|+++.+.+.. +..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 341 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDV 341 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTT
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHH
Confidence 6655566677888899999999999999999998876 468999999999999999999999999999987543 7788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 449 ISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 449 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
+..++.++.+.|++++|..+++++.+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------------- 368 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDR----------------------------------------------------- 368 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh-----------------------------------------------------
Confidence 999999999999999999999998752
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChH
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLN 608 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 608 (790)
.+.+..+++.++..|.+.|+++
T Consensus 369 ----------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 369 ----------------------------------------------------------HPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp ----------------------------------------------------------CTTSHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------------------------------------CcccHHHHHHHHHHHHHhccHH
Confidence 1335677888999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 609 LACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 609 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
+|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998765 5578899999999999999999999999999874 4588999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 003872 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSG 762 (790)
Q Consensus 689 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 762 (790)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+
T Consensus 469 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 ALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 874 558899999999999999999999999999875 77888 7899999999999999999999999998764
Q ss_pred CCCCccchhHHHHHHHHHHhhhh
Q 003872 763 CTPNHVTDTTLDFLGREIDRLKD 785 (790)
Q Consensus 763 ~~p~~~t~~~l~~l~~~~~~~~~ 785 (790)
+.+..+|..+.......++.++
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHH
Confidence 3355556666555554444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=257.59 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=102.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+....+ .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------~ 81 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------S 81 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------h
Confidence 35555666666666666666666666666666666666666666554431000 0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYT 397 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 397 (790)
+.+.++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 01113445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 398 LFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
+|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=257.06 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHH
Q 003872 289 DALIVWEELKGSGHEPNE-FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR---------KVM 358 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~~ 358 (790)
.+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445555555544443 3466677777777777777777777777777777777777777776554 378
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 359 EACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
+|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 439 GRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..+....
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-24 Score=226.36 Aligned_cols=222 Identities=11% Similarity=-0.057 Sum_probs=109.8
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
.+.+.|++++|.+.++.+.+... .+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555554421 123344444455555555555555555554432 3445555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 325 AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404 (790)
Q Consensus 325 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 404 (790)
|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555432 1123345555555555555555555555555432 11233344444555555555555555555554
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 003872 405 KGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHI 472 (790)
Q Consensus 405 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (790)
.... +..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++.
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4221 3444555555555555555555555555443221 3344444444445555555554444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-24 Score=222.00 Aligned_cols=381 Identities=12% Similarity=-0.039 Sum_probs=291.9
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG 285 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 285 (790)
+...+.+.|++++|.+.+..+.+. .|.+...+..+...+...|++++|..+++...+.. +.+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 455678899999999999998863 34456677788888999999999999999988763 447889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFE 365 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~ 365 (790)
++++|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998763 45567899999999999999999999999987642 245567778888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 003872 366 KMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445 (790)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 445 (790)
++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..+.... +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 998864 345788999999999999999999999999987543 5677888999999999999999999998876332 5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccc
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (790)
..++..+..++...|++++|...++++.+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------- 266 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------------------------------------------------- 266 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------------
Confidence 778888888888888888888888877652
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcC
Q 003872 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKG 605 (790)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 605 (790)
.+.++.++..++..+.+.|
T Consensus 267 -------------------------------------------------------------~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 267 -------------------------------------------------------------QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp -------------------------------------------------------------CSSCHHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHHHHcC
Confidence 1224455666666777777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
++++|...|+.+.+.. +.+..+|..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777666554 455666666666666666666666666666654 23345566666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 686 KLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 686 ~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
++.+.. +.+...|..+...+..
T Consensus 364 ~a~~~~--p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRIS--PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTC--TTCHHHHHHHHHHHHH
T ss_pred HHHhhC--CCCHHHHHhHHHHHHH
Confidence 665532 2234444444444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=213.91 Aligned_cols=444 Identities=11% Similarity=0.002 Sum_probs=321.4
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
..+..+...+.+.|++++|+..|+.+.+. .|+...|..+..++.+.|++++|...++++.+.+. .+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 34556777888999999999999999873 26888999999999999999999999999988743 356788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEA 360 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 360 (790)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988775 4455555555555555444444444444333332222222211111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCCC--------CCHhhHH
Q 003872 361 CQLFEKMVQDGV---------RTSCWTHNILIDGLFR---NGRAEAAYTLFCDLKK-----KGKF--------VDGITFS 415 (790)
Q Consensus 361 ~~l~~~~~~~~~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~ 415 (790)
..+...+..... +.+...+......+.. .|+++.|..+++++.+ .... .+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111110 1124444444444444 7999999999999887 3111 2345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 416 IVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
.+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------- 300 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD------------------- 300 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------------
Confidence 8888899999999999999999887544 8888889999999999999999999887621
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 301 -------------------------------------------------------------------------------- 300 (514)
T 2gw1_A 301 -------------------------------------------------------------------------------- 300 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
+.++.++..+...|...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 301 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 301 ------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp ------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2244567788899999999999999999998875 456788899999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 003872 656 FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGK---AGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 656 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 728 (790)
. +.+..++..+...|...|++++|...++++.+..+..++ ...|..+..++.. .|++++|...++++....
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 3 346778889999999999999999999999876422333 4488889999999 999999999999998852
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 729 NPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 729 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+.+..++..+..++.+.|++++|.+.+++..+. .|+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 335778889999999999999999999999865 4543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-21 Score=209.05 Aligned_cols=234 Identities=12% Similarity=-0.063 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIG 455 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 455 (790)
..++..+...+...|++++|...++++...... ...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH
Confidence 344555555666666666666666666554322 555555666666666666666666666654322 45566666666
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCC
Q 003872 456 FHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEG 535 (790)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (790)
+...|++++|...++++.+..
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~----------------------------------------------------------- 334 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD----------------------------------------------------------- 334 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------------------------------------------------------
Confidence 667777777777766665421
Q ss_pred CCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 003872 536 DAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFE 615 (790)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 615 (790)
+.+...+..+...|...|++++|...++
T Consensus 335 ----------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 335 ----------------------------------------------------PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp ----------------------------------------------------SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred ----------------------------------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1123345556666666777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003872 616 IFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IATYNVVIQGLGK---MGRADLASTILDKL 687 (790)
Q Consensus 616 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~ 687 (790)
.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+...|.. .|++++|...++++
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 766553 345566777777777777777777777777654211 11 3367777777777 78888888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 688 MKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 688 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 442 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7763 345667777777777888888888888877764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-19 Score=190.50 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=243.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLN 349 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (790)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..+|...|++++|...|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455555555666666666666666555432 3345555555555556666666666665555442 123445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 003872 350 GMFKSRKVMEACQLFEKMVQDGVRTS-C---WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG 425 (790)
Q Consensus 350 ~~~~~~~~~~a~~l~~~~~~~~~~~~-~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 425 (790)
.|...|++++|...|+.+.+.. |+ . ..+..+...+.. ..+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 5555555555555555555432 22 1 233333222111 11222344577788
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCC
Q 003872 426 QIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPM 505 (790)
Q Consensus 426 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 505 (790)
++++|...++++.+... .+...+..+..+|.+.|++++|...++++.+.
T Consensus 158 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------ 206 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL------------------------------ 206 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------------------------------
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------
Confidence 88999988888887533 37788888888899999999999888887652
Q ss_pred CCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCC
Q 003872 506 FPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKG 585 (790)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (450)
T 2y4t_A 207 -------------------------------------------------------------------------------- 206 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHh
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSM------------MSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~ 653 (790)
.+.++.++..++..|...|++++|...|+.+.+.. +.+...+..+ ...+.+.|++++|...|+++.
T Consensus 207 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 -KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp -HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12356677888888889999999999998887664 3344455444 788899999999999999998
Q ss_pred hcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 654 EKFCPTD-----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 654 ~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...|+++.+.
T Consensus 285 ~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 358 (450)
T 2y4t_A 285 KTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-- 358 (450)
T ss_dssp HHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred hcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 853 33 3477888899999999999999999998863 457889999999999999999999999999874
Q ss_pred CCC-hHHHHHHHH------------HHhccC-----CHHHHHHHHHHHHhCCCCCCccch--------hHHHHHHHHHHh
Q 003872 729 NPD-VVTFNTLIE------------VNGKAG-----RLKEAHYFLKMMLDSGCTPNHVTD--------TTLDFLGREIDR 782 (790)
Q Consensus 729 ~p~-~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~t~--------~~l~~l~~~~~~ 782 (790)
.|+ ...+..+.. .|...| +.+++.+.++++... ..||.... ..+..+...++.
T Consensus 359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 554 555555552 233444 567778888874321 35665432 234445555555
Q ss_pred hhhh
Q 003872 783 LKDQ 786 (790)
Q Consensus 783 ~~~~ 786 (790)
..|.
T Consensus 438 L~d~ 441 (450)
T 2y4t_A 438 LSDP 441 (450)
T ss_dssp SSGG
T ss_pred hCCH
Confidence 5443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-19 Score=190.69 Aligned_cols=315 Identities=12% Similarity=0.034 Sum_probs=249.7
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.++..+..+...+.+.|++++|+.+|+.+.... +.+..++..+...|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 567888899999999999999999999999875 4478999999999999999999999999999986 34688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc---chHHHH------------HHHHHhccchHHHHHHHHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC---VACNEL------------LVALRKSDRRSEFKQVFERL 226 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~ 226 (790)
.+|.+.|++++|...|+++++. .+.+. ..+..+ ...+...|++++|...|+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS------------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999874 22233 455544 44488889999999999988
Q ss_pred HhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003872 227 KEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 227 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
.+. .+.+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+.
T Consensus 170 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 170 LEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 863 34467788888888999999999999999887753 3367888888888999999999999998887653 3344
Q ss_pred HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 307 FTHRII------------IQGCCKSYRMDDAMKIFSEMQYNGLIPD-----TVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 307 ~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
..+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445444 67788888888888888888764 344 34677778888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 003872 370 DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVV 418 (790)
Q Consensus 370 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 418 (790)
.. +.+..++..+..+|...|++++|...++++.+.... +...+..+.
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 53 346778888888888888888888888888875332 344444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-19 Score=196.81 Aligned_cols=93 Identities=14% Similarity=-0.015 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
...|..+...+.+.|++++|...|+.+...+ +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556666666677777777777777766654 2356666667777777777777777777766654 2355666666666
Q ss_pred HHhcCChhHHHHHHH
Q 003872 164 LVRKKQLGLAMSILF 178 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~ 178 (790)
+...|++++|...|+
T Consensus 103 ~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 666677776666664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-19 Score=194.86 Aligned_cols=331 Identities=13% Similarity=0.033 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
...+..+...+.+.|++++|++.|+++.... +.++.++..+..++...|++++|...++++++. .+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~ 91 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI------------KPD 91 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCc
Confidence 4566777777788888888888888887765 346777888888888888888888888887775 344
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC------CCCCCHh
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK------GLVPDLH 272 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~ 272 (790)
+...+..+...+...|++++|...|+.+.. .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 566777777788888888888888763322 1221 112233444445556667766666432 1112211
Q ss_pred H------------------------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------H
Q 003872 273 T------------------------------YNSLIQVLC--------VVGKVKDALIVWEELKGSGHEPNE-------F 307 (790)
Q Consensus 273 ~------------------------------~~~ll~~~~--------~~~~~~~a~~~~~~~~~~g~~~~~-------~ 307 (790)
. ...+...+. ..|++++|..+++++.+.. +.+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~ 244 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHH
Confidence 1 111111111 1247889999999988763 2232 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4666667788899999999999999875 4667888888899999999999999999998764 346788999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHH
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTER 467 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 467 (790)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999887433 56778889999999999999999999998874 3367788889999999999999999
Q ss_pred HHHHHHh
Q 003872 468 LMKHIRD 474 (790)
Q Consensus 468 ~~~~~~~ 474 (790)
.++++.+
T Consensus 400 ~~~~a~~ 406 (537)
T 3fp2_A 400 QYDIAKR 406 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-15 Score=165.54 Aligned_cols=355 Identities=12% Similarity=0.085 Sum_probs=269.7
Q ss_pred ChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCC--CCCHHHHHHH
Q 003872 48 SEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDV--VVDSETFKLL 125 (790)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~l 125 (790)
.++++..||.... ..+ -.+.+|.....-.-+.+++--...++.|...|.+.+|+++++...-.+- .-+...-+.+
T Consensus 952 d~~lW~~vl~~~n-~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 952 DPELWGSVLLESN-PYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred CHHHHHHHhcCCc-HHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4556666664322 111 2345554333222345777778899999999999999999999884432 1234566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (790)
+.+..+. +..+..+...++... + ...+...+...|.+++|..+|++... +..
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~--------------------~~~ 1080 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV--------------------NTS 1080 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC--------------------HHH
Confidence 7777776 556776666665532 1 33477888899999999999988521 122
Q ss_pred HHHH-HHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 LLVA-LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
.+.. +...+++++|.++.++.. +..+|..+..++...|++++|...|.+. -|...|..++.++.+.
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHc
Confidence 2222 337889999999988663 5778999999999999999999999664 3788889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLF 364 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~ 364 (790)
|++++|.+.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|
T Consensus 1148 GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y 1218 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLY 1218 (1630)
T ss_pred CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999887763 44334445889999999988644442 2 356677778999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 003872 365 EKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVV 444 (790)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 444 (790)
... ..|..+...|++.|+++.|.+.+++. .+..+|..+-.+|...|++..|...... +..
T Consensus 1219 ~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv 1278 (1630)
T 1xi4_A 1219 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 1278 (1630)
T ss_pred Hhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhc
Confidence 985 36899999999999999999999877 2678899999999999999999886654 334
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 445 DLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
++..+..++..|.+.|.+++|..+++.....
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6778889999999999999999999887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-16 Score=163.94 Aligned_cols=320 Identities=12% Similarity=0.032 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344555555666666666666666655432 1234555555555666666666666666655542 22445555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchH
Q 003872 387 FRNGRAEAAYTLFCDLKKKGKF--VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDF 464 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 464 (790)
...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 5566666666666555544210 01111111111100 1112334678889999999
Q ss_pred HHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCccccccc
Q 003872 465 TERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQL 544 (790)
Q Consensus 465 a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (790)
|...++++.+.
T Consensus 139 A~~~~~~~~~~--------------------------------------------------------------------- 149 (359)
T 3ieg_A 139 AITFLDKILEV--------------------------------------------------------------------- 149 (359)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 99999988762
Q ss_pred CCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003872 545 TNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHP 624 (790)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 624 (790)
.+.++.++..+...+...|++++|...++.+.+.. +.
T Consensus 150 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 186 (359)
T 3ieg_A 150 ------------------------------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SD 186 (359)
T ss_dssp ------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SC
T ss_pred ------------------------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 12356678889999999999999999999998875 66
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV------------VIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
+...+..+...+...|++++|...++++.+.. +.+...+.. +...+.+.|++++|...++++.+..
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 264 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 78899999999999999999999999998863 334444432 3666899999999999999999875
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 693 GYLDV----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 693 ~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
+.+. ..+..+..++...|++++|...+++..+.. +.+..+|..+..++.+.|++++|.+.+++..+. .|+..
T Consensus 265 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 265 -PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred -CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 2233 235567788999999999999999999852 336889999999999999999999999999954 56654
Q ss_pred c
Q 003872 769 T 769 (790)
Q Consensus 769 t 769 (790)
.
T Consensus 341 ~ 341 (359)
T 3ieg_A 341 Q 341 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-16 Score=159.12 Aligned_cols=327 Identities=11% Similarity=0.004 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSL 164 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 164 (790)
..+..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344445555555555555555555555443 2244555555555555555555555555555443 12344455555555
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCC----CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLP----GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
...|++++|...++++++. .| +...+..+...+ ....+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~------------------------~~~~~~ 124 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-------------NPSEQEEKEAESQLVKAD------------------------EMQRLR 124 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-------------CCCHHHHHHHHHHHHHHH------------------------HHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc-------------CCcccChHHHHHHHHHHH------------------------HHHHHH
Confidence 5555555555555554431 11 111111111000 000112
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 235666777888888888888776532 356677777777888888888888888877664 556677777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYN------------SLLNGMFKSRKVMEACQLFEKMVQDGVRTSC----WTHNILID 384 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~----~~~~~li~ 384 (790)
++++|...+++..+... .+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 88888888877775421 1222222 2244567777777887777777764311 22 22444566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 385 GLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
.+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.... +...+..+..+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 350 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 77777777777777777776532 25666777777777777777777777777765322 444555444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-15 Score=163.44 Aligned_cols=420 Identities=11% Similarity=0.017 Sum_probs=284.5
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.+...|..++. +.+.|++++|..+|+.+.+ ..|.+...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4556778888887 4778999999999999985 35557788999999999999999999999999876 46777776
Q ss_pred HHHHHH-HhcCCHHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCC
Q 003872 276 SLIQVL-CVVGKVKDALI----VWEELKG-SGHE-PNEFTHRIIIQGCCK---------SYRMDDAMKIFSEMQYNGLIP 339 (790)
Q Consensus 276 ~ll~~~-~~~~~~~~a~~----~~~~~~~-~g~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p 339 (790)
..+... ...|+.+.|.+ +|+.... .|.. .+...|...+....+ .|+++.|..+|++..+. |
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence 666433 34566666554 6666543 2433 346677777766554 67788888888888773 3
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---C
Q 003872 340 DT---VVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL------KKKG---K 407 (790)
Q Consensus 340 ~~---~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~~---~ 407 (790)
.. ..|..........+. ..+..++. ...+++..|..++..+ .+.. +
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 21 233222211100110 00111110 0123345555544442 1111 2
Q ss_pred CCC--------HhhHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh-------cCCch-
Q 003872 408 FVD--------GITFSIVVLQLCRE----GQI----EEALRLVEEMEGRGFVVDLVTISSLLIGFHK-------YGRWD- 463 (790)
Q Consensus 408 ~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 463 (790)
.|+ ...|...+...... ++. +.+..+|++++... +-+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 232 23444444333222 222 46777888887752 3367788888777765 68887
Q ss_pred ------HHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCC
Q 003872 464 ------FTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537 (790)
Q Consensus 464 ------~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (790)
+|..++++..+.
T Consensus 298 a~~~~~~A~~~~~~Al~~-------------------------------------------------------------- 315 (530)
T 2ooe_A 298 AKLFSDEAANIYERAIST-------------------------------------------------------------- 315 (530)
T ss_dssp HHHHHHHHHHHHHHHTTT--------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 889999887641
Q ss_pred cccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 538 KDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
..+.+..+|..++..+.+.|++++|..+|+.+
T Consensus 316 ------------------------------------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 316 ------------------------------------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp ------------------------------------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01235667788888888999999999999999
Q ss_pred HhCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCC
Q 003872 618 TDMGVHPV-N-YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRADLASTILDKLMKQGGGY 694 (790)
Q Consensus 618 ~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~ 694 (790)
.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+..++.. +
T Consensus 348 l~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p 422 (530)
T 2ooe_A 348 LAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--G 422 (530)
T ss_dssp HHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--T
T ss_pred hCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--C
Confidence 886 443 2 578888888889999999999999998862 2233333332222 346899999999999998874 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG-INPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
-+...|..++..+.+.|++++|+.+|++....+ ..|+ ...|..++......|+.+.+..+.+++.+.
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999998853 2332 447888888888899999999999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-14 Score=154.36 Aligned_cols=354 Identities=12% Similarity=0.054 Sum_probs=256.9
Q ss_pred chhhHHHHHHHHhc----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 003872 235 DIYGYNICIHAFGC----WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 235 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45556666666665 677778888877777653 55666667777777 777888888887777654 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003872 307 FTHRIIIQGCCK----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWT 378 (790)
Q Consensus 307 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~ 378 (790)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 556666666766 677888888888777764 55666666666665 677888888888877764 5667
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003872 379 HNILIDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTIS 450 (790)
Q Consensus 379 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 450 (790)
+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777777 778888888888877764 45566666677665 678888888888887764 455666
Q ss_pred HHHHHHHh----cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccc
Q 003872 451 SLLIGFHK----YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLET 526 (790)
Q Consensus 451 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (790)
.+...|.. .+++++|...+++..+.+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------------------------------------- 289 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------------------------------
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------------------------------
Confidence 66666766 778888888887766532
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHc--
Q 003872 527 DANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAK-- 604 (790)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 604 (790)
++..+..+...|...
T Consensus 290 ---------------------------------------------------------------~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 290 ---------------------------------------------------------------NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHHHHCBT
T ss_pred ---------------------------------------------------------------CHHHHHHHHHHHHcCCC
Confidence 233444555666665
Q ss_pred ---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----c
Q 003872 605 ---GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG---YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----M 674 (790)
Q Consensus 605 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 674 (790)
+++++|...|+...+.| +...+..|...|...| ++++|+..|++..+.| +...+..+...|.. .
T Consensus 307 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 78888888888888765 3456667777777656 7888888888888763 67778888888887 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 729 (790)
+++++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.|..
T Consensus 381 ~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88999999998888765 56777778888877 78899999999988886543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-14 Score=153.45 Aligned_cols=366 Identities=12% Similarity=0.033 Sum_probs=303.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK----SYRMDDAM 326 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~ 326 (790)
+...+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355555555543 77778888888887 899999999999998764 56777888888888 89999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 003872 327 KIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR----NGRAEAAYTL 398 (790)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~ 398 (790)
+.|++..+.| +...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .++.++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 66777778888887 789999999999999876 56778888888887 7899999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh----cCCchHHHHHHH
Q 003872 399 FCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK----YGRWDFTERLMK 470 (790)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 470 (790)
|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|...++
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998875 67788888888888 899999999999998876 56777888888876 789999999998
Q ss_pred HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCC
Q 003872 471 HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEW 550 (790)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (790)
+..+.+
T Consensus 248 ~a~~~~-------------------------------------------------------------------------- 253 (490)
T 2xm6_A 248 QSAEQG-------------------------------------------------------------------------- 253 (490)
T ss_dssp HHHTTT--------------------------------------------------------------------------
T ss_pred HHHHCC--------------------------------------------------------------------------
Confidence 877632
Q ss_pred CCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCh
Q 003872 551 SSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLA----KGKLNLACKLFEIFTDMGVHPVN 626 (790)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 626 (790)
++..+..+...|.. .++.++|...|+...+.| +.
T Consensus 254 ---------------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~ 291 (490)
T 2xm6_A 254 ---------------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS 291 (490)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH
T ss_pred ---------------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH
Confidence 23334455666666 789999999999998765 45
Q ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHH
Q 003872 627 YTYNSMMSSFVKK-----GYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG---RADLASTILDKLMKQGGGYLDVV 698 (790)
Q Consensus 627 ~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~ 698 (790)
..+..|...|... +++++|+..|++..+.| +...+..+...|...| +.++|.++|++..+.+ +..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHH
Confidence 6777788888877 89999999999999874 5667778888887766 8899999999999875 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC
Q 003872 699 MYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 699 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 764 (790)
.+..+...|.. .+++++|...|++..+.| +...+..|...|.+ .+++++|..++++..+.+..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88889888988 899999999999999865 57788889999988 89999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-15 Score=161.14 Aligned_cols=219 Identities=7% Similarity=-0.064 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 003872 359 EACQLFEKMVQDGVRTSCWTHNILIDGLFR-------NGRAE-------AAYTLFCDLKKKGKFVDGITFSIVVLQLCRE 424 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 424 (790)
++..+|++..... +-+...|..+...+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566666666542 2355666666666654 56665 7777777776521222466677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCC
Q 003872 425 GQIEEALRLVEEMEGRGFVVDL-VTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYT 503 (790)
Q Consensus 425 g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 503 (790)
|++++|..+|+++.+.... +. ..|..++..+.+.|+++.|..+|++..+.. |+
T Consensus 335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~----------------------- 388 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT----------------------- 388 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TC-----------------------
T ss_pred CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CC-----------------------
Confidence 7888888888777764221 22 467777777777778888888887776521 10
Q ss_pred CCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhc
Q 003872 504 PMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQG 583 (790)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 583 (790)
T Consensus 389 -------------------------------------------------------------------------------- 388 (530)
T 2ooe_A 389 -------------------------------------------------------------------------------- 388 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHH-HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CC--
Q 003872 584 KGMGTFDIDMVNTFLS-IFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PT-- 659 (790)
Q Consensus 584 ~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~-- 659 (790)
+...+...+. .+...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++...... .|
T Consensus 389 ------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 389 ------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp ------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred ------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 0111111111 1235778888888888777653 44677788888888888888888888888877532 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
....|...+......|+.+.+..+++++.+..
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 24477777777778888888888888887763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-13 Score=152.54 Aligned_cols=463 Identities=11% Similarity=0.112 Sum_probs=276.6
Q ss_pred HHHHHHHhcCCcch-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Q 003872 89 HIFRTVCRAGFLEE-VPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLV 165 (790)
Q Consensus 89 ~l~~~~~~~~~~~~-a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~ 165 (790)
.+|++.-+++-|.. |+-+++ + -|...|..++.- +-+-=.++.++.....+ ..+++-....+++|.
T Consensus 929 eli~vt~~n~l~k~~arylv~----r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~ 996 (1630)
T 1xi4_A 929 ELINVCNENSLFKSLSRYLVR----R---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM 996 (1630)
T ss_pred HHHHHHhcchhHHHHHHHHHH----h---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH
Confidence 45666666666653 333332 1 255566655522 11222334444333322 345556677777777
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
..|.+.+|++++++++-.... ...+....+.|+....+. +..+..+....+.. ....-+...
T Consensus 997 ~aglp~EaieLLEKivl~~s~---------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~I 1058 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSV---------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANI 1058 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCc---------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHH
Confidence 778888888877777632110 112344555566655555 44555555544432 113336666
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 677788888888887752 12222222222 566777777777755 2356677777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
.+.|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7777543 366667777777888888888888777666543 33333345777777777777533332 1
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHH
Q 003872 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWK 485 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 485 (790)
.++...|..+...|...|++++|..+|..+ ..|..+..++.+.|+++.|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 235555666777777788888888877764 367777778888888888877777662 234454
Q ss_pred HHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhc
Q 003872 486 ADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKS 565 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (790)
.+-.+++..+. +..|
T Consensus 1255 ev~~acve~~E---------------f~LA-------------------------------------------------- 1269 (1630)
T 1xi4_A 1255 EVCFACVDGKE---------------FRLA-------------------------------------------------- 1269 (1630)
T ss_pred HHHHHHhhhhH---------------HHHH--------------------------------------------------
Confidence 44333332211 1111
Q ss_pred cCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CCHH
Q 003872 566 DCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK--GYFN 643 (790)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~ 643 (790)
+....+ ...+++.+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. ++..
T Consensus 1270 -----------~~cgl~----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1270 -----------QMCGLH----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred -----------HHHHHh----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 100000 01256667788999999999999999998877655 44556676676676664 4566
Q ss_pred HHHHHHHHHhhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHhCCCCCCHHHHHHHH
Q 003872 644 QAWGVLNEMGEKFCPT------DIATYNVVIQGLGKMGRADLASTI-------------LDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 644 ~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~~~~~~~~~p~~~~~~~li 704 (790)
++.++|..-.. +++ +...|.-++..|.+.|+++.|... |...+. -..|...|-..+
T Consensus 1334 Ehlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~---kv~n~elyykai 1408 (1630)
T 1xi4_A 1334 EHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT---KVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc---ccccHHHHHHHH
Confidence 66666664333 222 456788888999999999988732 222221 234666777777
Q ss_pred HHHHhcC
Q 003872 705 NVLGKAG 711 (790)
Q Consensus 705 ~~~~~~g 711 (790)
..|...+
T Consensus 1409 ~Fyl~~~ 1415 (1630)
T 1xi4_A 1409 QFYLEFK 1415 (1630)
T ss_pred HHHHhhC
Confidence 7776443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=155.99 Aligned_cols=268 Identities=10% Similarity=-0.047 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccC
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESL 197 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 197 (790)
+...+..+...+...|++++|+++|+++.+... .+...+..++..+...|++++|...++++++. .+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~ 87 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL------------YP 87 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh------------Cc
Confidence 334455555555555666666666666655432 23344445555555556666666666555553 23
Q ss_pred CCcchHHHHHHHHHhcc-chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 198 PGCVACNELLVALRKSD-RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 198 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
.+...+..+...+...| ++++|.+.|+...+. .+.+...|..+...+...|++++|...|+++.+.... +...+..
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 164 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLY 164 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHH
Confidence 33444555555555555 555555555555431 1223444555555555555555555555555544221 2334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG--------LIPDTVVYNSLL 348 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li 348 (790)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+....++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 5555555555555555555555442 3334455555555555555555555555544310 011223344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 349 NGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 349 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
..+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444322 1123333444444444444444444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-15 Score=155.05 Aligned_cols=293 Identities=11% Similarity=-0.030 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 003872 151 SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230 (790)
Q Consensus 151 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (790)
+.++..+..+...+...|++++|..+|+++++. .+.+...+..++..+...|++++|..+++.+.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK------------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 456667888888899999999999999999876 4555667777888889999999999999998863
Q ss_pred CCCCchhhHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 231 EFEFDIYGYNICIHAFGCWG-DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTH 309 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 309 (790)
.+.+...|..+...+...| ++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 3345678888888899999 899999999998876432 56778888899999999999999999988764 3445667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHH
Q 003872 310 RIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG--------VRTSCWTHNI 381 (790)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~--------~~~~~~~~~~ 381 (790)
..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 778888999999999999999988764 3367788888889999999999999998887631 1334568888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH-HhcC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF-HKYG 460 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g 460 (790)
+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhC
Confidence 888999999999999999988876433 66778888888999999999999999887753 23677777777777 4455
Q ss_pred Cc
Q 003872 461 RW 462 (790)
Q Consensus 461 ~~ 462 (790)
+.
T Consensus 320 ~~ 321 (330)
T 3hym_B 320 DS 321 (330)
T ss_dssp C-
T ss_pred ch
Confidence 54
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=181.30 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=95.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMG---EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN 701 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 701 (790)
-..+|++||++|++.|++++|..+|.+|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.| +.||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 34577777777777777777777776654 34677777777777777777777777777777777766 777777777
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 702 TLINVLGKAGR-FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 702 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 77777777776 366777777777777777777777777655553 334444444 3445554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-15 Score=153.18 Aligned_cols=256 Identities=14% Similarity=0.014 Sum_probs=163.2
Q ss_pred Cchhhhh-hhhhhhcCCCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 62 DSSKKLD-FFRWCSSLRPIYKH-TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 62 ~~~~al~-~f~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
+...|+. .|..+....+..+. +...+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|+
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4566777 77766555554322 45778889999999999999999999999886 447889999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH--------------
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE-------------- 205 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 205 (790)
+.|+++.+.. +.+..++..+...+...|++++|...+++++..... +...+..
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA------------YAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT------------TGGGCC---------------
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------cHHHHHHHHHHhhhhcccHHH
Confidence 9999999886 347889999999999999999999999999885321 1111111
Q ss_pred -HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 -LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
.+..+...|++++|...|+.+.+...-.++..++..+...+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence 1222225555666666665555422221234555555555555555555555555555442 11344555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|++..
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555554432 2334445555555555555555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=157.25 Aligned_cols=268 Identities=10% Similarity=-0.089 Sum_probs=202.5
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
...+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 140 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV 140 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 455666777777777777777777777752 234566777777777777888888888877776642 25677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRI---------------IIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVV 343 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~ 343 (790)
.+...|++++|...++++.+.. +.+...+.. .+..+...|++++|...++++.+.... ++..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 7778888888888887777653 222222211 233344889999999999998875322 14778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 003872 344 YNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR 423 (790)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 423 (790)
+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 8889999999999999999999988764 34578889999999999999999999999887643 367788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCcc----------CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 424 EGQIEEALRLVEEMEGRGFVV----------DLVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
.|++++|...++++.+..... ...+|..+..++...|++++|..++.+..
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999987642221 26889999999999999999999887543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=156.89 Aligned_cols=275 Identities=10% Similarity=-0.054 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIG 455 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 455 (790)
...+..+...+.+.|++++|+.+|+++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 344666667777777777777777777665432 566677777777777777777777777776532 256777778888
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCC
Q 003872 456 FHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEG 535 (790)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (790)
|...|++++|...++++.+.. |+.......
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~------------------------------------------------ 172 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKN------------------------------------------------ 172 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhh------------------------------------------------
Confidence 888888888888887776521 111000000
Q ss_pred CCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 003872 536 DAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFE 615 (790)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 615 (790)
.......+..+...+...|++++|...|+
T Consensus 173 ---------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 173 ---------------------------------------------------KKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp -------------------------------------------------------------------CCHHHHHHHHHHH
T ss_pred ---------------------------------------------------hccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 00012334566788889999999999999
Q ss_pred HHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003872 616 IFTDMGVHP--VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG 693 (790)
Q Consensus 616 ~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 693 (790)
.+.+.. +. +..++..+...|...|++++|+..++++.+.. +.+..+|+.+..+|...|++++|...|+++++..
T Consensus 202 ~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 277 (365)
T 4eqf_A 202 EAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-- 277 (365)
T ss_dssp HHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 998875 33 68899999999999999999999999999873 4578899999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-C--------CChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 694 YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--I-N--------PDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
+.+..+|..+..+|...|++++|...|+++.+.. . . .+..+|..+..++...|+.+.+..+.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4568899999999999999999999999998631 1 1 1367899999999999999988877665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-15 Score=149.13 Aligned_cols=239 Identities=13% Similarity=0.070 Sum_probs=76.3
Q ss_pred hcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003872 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMS 175 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 175 (790)
+.|++++|.+.++.+. ++.+|..++.++.+.|++++|++.|.+. +|+..|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455666666666551 2236666666666666666666666431 355566666666666666666666
Q ss_pred HHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHH
Q 003872 176 ILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTS 255 (790)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 255 (790)
.++...+ ..+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|
T Consensus 83 yl~~ark-------------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 83 YLQMARK-------------KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT--------CC----------------CTTTH
T ss_pred HHHHHHH-------------hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 5554443 22334555566666666666666655542 24555666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 256 LRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 256 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..+|..+ ..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 142 ~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--- 203 (449)
T 1b89_A 142 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--- 203 (449)
T ss_dssp HHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---
T ss_pred HHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---
Confidence 7777655 25666667777777777777766666 25666677777777777776664433321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 336 GLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
...+.-...++..|.+.|.+++|..+++...... +-....|+-|.-.|++
T Consensus 204 --~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 204 --VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred --HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 1222333456666666677777766666666543 3445555555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-15 Score=152.67 Aligned_cols=247 Identities=12% Similarity=-0.030 Sum_probs=160.6
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+...+..+...+.+.|++++|..+|+.+.... +.+..++..+...|...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999999876 3478999999999999999999999999999875 34688999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
.+|...|++++|...++++++......... .........+..+...+...|++++|...++.+.+...-.++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLV--KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHH--hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999988532110000 000001122233455666666666666666666653222224555666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
+...|...|++++|...|+++.+... .+..++..+..+|...|++++|...|++..+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 66666666666666666666655422 245556666666666666666666666655442 3335555555555666666
Q ss_pred HHHHHHHHHHHHH
Q 003872 322 MDDAMKIFSEMQY 334 (790)
Q Consensus 322 ~~~a~~~~~~m~~ 334 (790)
+++|...|+++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-17 Score=176.36 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH---hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFT---DMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
...+|+++|++||+.|++++|..+|+.|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999998875 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------hHHHHHHH
Q 003872 667 VIQGLGKMGR-ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD------VVTFNTLI 739 (790)
Q Consensus 667 li~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~ 739 (790)
+|+++++.|+ .++|.++|++|.+.| +.||..+|++++.++.+.+ +++..+++ ..++.|+ ..+-..|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 9999999998 478999999999998 9999999999987766643 44444444 3456655 45556677
Q ss_pred HHHhccCC---------HHHHHHHHHHHH
Q 003872 740 EVNGKAGR---------LKEAHYFLKMML 759 (790)
Q Consensus 740 ~~~~~~g~---------~~~A~~~~~~m~ 759 (790)
+.|.+.+. .++-...+++-.
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 88887662 455556665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=151.71 Aligned_cols=222 Identities=12% Similarity=0.096 Sum_probs=93.9
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 290 (790)
.+.|+.++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 356778999999988843 358999999999999999999999653 5777999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988877764 5567888999999999999999988885 367789999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003872 371 GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTIS 450 (790)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 450 (790)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 36899999999999999999999988 2789999999999999999999554443 334555566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 003872 451 SLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
.++..|.+.|++++|..+++....
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhC
Confidence 789999999999999999988765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=141.37 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH---HHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY---NVVIQ 669 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~ 669 (790)
.+..+...+...|++++|++.++. +.+...+..++..|.+.|++++|...++++.+.. |+.... ..++.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHH
Confidence 344444555555555555555544 3444555555555666666666666666655542 222111 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
.+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.+
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCH
Confidence 333345566666666666555 23455556666666666666666666666655531 123455555665666666654
Q ss_pred H-HHHHHHHHHhCCCCCCcc
Q 003872 750 E-AHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 750 ~-A~~~~~~m~~~~~~p~~~ 768 (790)
+ +.++++++.+. .|+..
T Consensus 252 eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 252 EVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHh--CCCCh
Confidence 4 34555555533 44443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=146.71 Aligned_cols=277 Identities=10% Similarity=0.004 Sum_probs=196.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 445555666666666666666666654322 45556666666667777777777777666553 2256666677777777
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|++++|...++++.+....... .+..+...
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~------------------------------------------------ 132 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQ-LGSVNLQA------------------------------------------------ 132 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTT-C-------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCccHH-HHHHHhHH------------------------------------------------
Confidence 77777777777776653211000 00000000
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH--HHHHcCChHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS--IFLAKGKLNLACKLFEI 616 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~ 616 (790)
.++......+.. .+...|++++|...++.
T Consensus 133 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 133 -------------------------------------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp --------------------------------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 000000111212 25567889999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
+.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 239 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGY 239 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 98775 5578899999999999999999999999998873 4568889999999999999999999999999874 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-----------DVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
...|..+..+|...|++++|.+.++++....... +..+|..+..++.+.|++++|..++++..
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999998742221 47789999999999999999999887543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-14 Score=143.28 Aligned_cols=279 Identities=12% Similarity=-0.012 Sum_probs=168.4
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...+......+...|++++|..+++.+..... .+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 556677888899999999999999999988753 478899999999999999999999999999875 347888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+...|++++|...++++++... .+...+..+... .|+......+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~-----------------------~~~~~~~~~~ 142 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP------------QYEQLGSVNLQA-----------------------DVDIDDLNVQ 142 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST------------TTTTC----------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC------------ccHHHHHHHhHH-----------------------HHHHHHHHHH
Confidence 99999999999999999987532 222222222000 0000111111
Q ss_pred HH--HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 243 IH--AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 243 i~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.. .+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 11 134445555555555555443211 34445555555555555555555555554432 333445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHc
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT-----------SCWTHNILIDGLFRN 389 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~-----------~~~~~~~li~~~~~~ 389 (790)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+....... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 5555555555554432 1234455555555555566666665555555432110 244555566666666
Q ss_pred CCHHHHHHHHHH
Q 003872 390 GRAEAAYTLFCD 401 (790)
Q Consensus 390 ~~~~~a~~~~~~ 401 (790)
|+++.|..++++
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-13 Score=144.18 Aligned_cols=393 Identities=11% Similarity=-0.014 Sum_probs=242.4
Q ss_pred CCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC-----C---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 003872 232 FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK-----G---LVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS--- 300 (790)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 300 (790)
.+.....||.+...+...|+.++|++.|++..+. + -.....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3444678999999999999999999999887542 1 1224578889999999999999999998877532
Q ss_pred --C--CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHC
Q 003872 301 --G--HEPNEFTHRIIIQGCCK--SYRMDDAMKIFSEMQYNGLIPD-TVVYNSLLNG---MFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 301 --g--~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~l~~~~~~~ 370 (790)
+ ......++..+..++.. .+++++|+..|++..+.. |+ ...+..+... +...++.++|++.+++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 01234556555555544 356899999999988753 43 4444444433 34557778888888888775
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCH
Q 003872 371 GVRTSCWTHNILIDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDL 446 (790)
Q Consensus 371 ~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 446 (790)
+ +.+..++..+...+.. .+++++|.+++++....... +...+..+...|...|++++|...++++.+.... +.
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 281 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA 281 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence 4 3355566555555544 45678899999888776433 6677888888999999999999999998876433 56
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccc
Q 003872 447 VTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLET 526 (790)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (790)
..+..+..+|...+....+...
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~---------------------------------------------------------- 303 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRE---------------------------------------------------------- 303 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----------------------------------------------------------
Confidence 6666666555322110000000
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC
Q 003872 527 DANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK 606 (790)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 606 (790)
..........+.
T Consensus 304 --------------------------------------------------------------------~~~~~~~~~~~~ 315 (472)
T 4g1t_A 304 --------------------------------------------------------------------NGMYGKRKLLEL 315 (472)
T ss_dssp ------------------------------------------------------------------------CHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhh
Confidence 000000011123
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHH
Q 003872 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIA--TYNVVIQ-GLGKMGRADLASTI 683 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~ 683 (790)
.++|...|+...+.. +.+...+..+...|...|++++|+..|++..+....+... .+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567778888777665 5566788888899999999999999999988764332221 2222322 23567899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-
Q 003872 684 LDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSG- 762 (790)
Q Consensus 684 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 762 (790)
|++.++. .|+...... ....+.+++++..... +.+..+|..|..+|...|++++|++.+++.++.|
T Consensus 395 y~kal~i---~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 395 FIEGVKI---NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHS---CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHhc---CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9998874 455433222 2344566666666542 3457889999999999999999999999988643
Q ss_pred CCCCccc
Q 003872 763 CTPNHVT 769 (790)
Q Consensus 763 ~~p~~~t 769 (790)
..|+..+
T Consensus 462 ~~p~a~~ 468 (472)
T 4g1t_A 462 LIPSASS 468 (472)
T ss_dssp -------
T ss_pred CCCcHhh
Confidence 3455444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-14 Score=138.02 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
++..+...+...++.++|++.++.+.. .+..| +...+..+...+...|++++|++.+++ +.+...+..+...
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 333333344444444444444444433 22212 233333344444444444444444443 2234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTH---RIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV 357 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 357 (790)
+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 444444444444444444331 221100 111122222344444444444444331 22344444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 003872 358 MEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEA-AYTLFCDLKK 404 (790)
Q Consensus 358 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~ 404 (790)
++|...|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444444432 2233444444444444444432 3344444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-12 Score=139.86 Aligned_cols=332 Identities=11% Similarity=-0.087 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccC
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL--------GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDN 187 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (790)
......|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...++++++.....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334578899999999999999999999887653 112345678999999999999999999999887754322
Q ss_pred CCCCcccccCCCcchHHHHHHHHHh--ccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHH---HhccCChHHHHHHHHH
Q 003872 188 TADNSVVESLPGCVACNELLVALRK--SDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHA---FGCWGDLHTSLRLFKE 261 (790)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~ 261 (790)
.... ......++..+..++.. .+++++|++.|++..+. .|+ ...+..+... +...++.++|++.+++
T Consensus 128 ~~~~----~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 128 SSPY----RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCSS----CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred cccc----chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1100 11123445555555544 45789999999998873 233 4444444433 3456778889998888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003872 262 MKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337 (790)
Q Consensus 262 m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (790)
..+.... +..++..+...+.. .++.++|.+.+++..... +.+...+..+...|...|++++|...+++..+..
T Consensus 201 al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 277 (472)
T 4g1t_A 201 AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI- 277 (472)
T ss_dssp HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-
Confidence 8776322 55566555555544 456788999998887664 5667788888899999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003872 338 IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417 (790)
Q Consensus 338 ~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (790)
+-+..++..+...|...+.. ..... ...........+..+.|...++........ +...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 22445555555444321110 00000 000001111123356777778777765432 45667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCccCHH--HHHHHHH-HHHhcCCchHHHHHHHHHHh
Q 003872 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLV--TISSLLI-GFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 474 (790)
...+...|++++|...|++..+....+... .+..+.. .....|++++|...+.+..+
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888888888764443221 2222222 23467888888888887766
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=123.37 Aligned_cols=118 Identities=15% Similarity=0.023 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 604 KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTI 683 (790)
Q Consensus 604 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 683 (790)
.|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344555555555554442 2334455555666666666666666666665542 23455666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 684 LDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 684 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++++++.. +.+...|..+..++...|++++|...|++..+
T Consensus 196 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666653 33456666666666666777777776666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-12 Score=121.35 Aligned_cols=65 Identities=18% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 409 VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 409 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...+++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666777777777777777777665332 566677777777777777777777776665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=122.72 Aligned_cols=224 Identities=12% Similarity=0.003 Sum_probs=120.9
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--C----HHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSL--S----PNVY 157 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 157 (790)
...|..+...+...|++++|...++.+.... .+..++..+...+...|++++|++.|++..+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666655 456666666666666666666666666665542111 1 3556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchh
Q 003872 158 DSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY 237 (790)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (790)
..+...+...|++++|...++++++.. |+ ...+...|++++|...++.+... .+.+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-------------RT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------------CC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-------------ch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHH
Confidence 666666666666666666666665531 11 12344455555555555555541 122334
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
.+..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 455555555555555555555555554421 134445555555555555555555555554432 233444555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~ 333 (790)
..|++++|...+++..
T Consensus 219 ~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEYASALETLDAAR 234 (258)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=134.31 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=88.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----
Q 003872 603 AKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG-----YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK---- 673 (790)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 673 (790)
..+++++|...|++..+.| +...+..|...|. .| ++++|+..|++.. . -+......|...|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCC
Confidence 3567777777777777665 4556666666665 44 7888888888776 3 356666666666655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
..++++|...|++..+.+ +......|...|.. ..++++|..+|+...+.|.. +.......+......++.+
T Consensus 335 ~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp SCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHH
T ss_pred CcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHH
Confidence 347888888888877765 23334445555543 35788888888888776632 2222222222223334566
Q ss_pred HHHHHHHHHH
Q 003872 750 EAHYFLKMML 759 (790)
Q Consensus 750 ~A~~~~~~m~ 759 (790)
+|.++.++..
T Consensus 410 ~a~~~~~~~~ 419 (452)
T 3e4b_A 410 EGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-09 Score=119.33 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=263.0
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG 250 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 250 (790)
.+....|++.+.. .+.|...|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|
T Consensus 49 ~d~i~~lE~~l~~------------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~ 114 (679)
T 4e6h_A 49 SDVIGKLNDMIEE------------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKM 114 (679)
T ss_dssp SCHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH------------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhC
Confidence 3444455665554 5678899999999999999999999999999964 5667788888888888888
Q ss_pred C---hHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHH
Q 003872 251 D---LHTSLRLFKEMKEKG-LVPDLHTYNSLIQVLCVVGKV--------KDALIVWEELKG-SGH-EP-NEFTHRIIIQG 315 (790)
Q Consensus 251 ~---~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~ 315 (790)
+ ++.+..+|++..... ..|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+..
T Consensus 115 ~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 115 EELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp -CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 8 999999999998763 137888888877766665543 344577776543 355 44 45677777765
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 316 CCK---------SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 316 ~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
... .++++.+..+|++........-..+|......--..+. ..+.+++.+.
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------- 254 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------- 254 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------
Confidence 432 33467788888887752111112233222111100010 0111111110
Q ss_pred HHcCCHHHHHHHHHHHHhC--CC----C-----------C-----C---HhhHHHHHHHHHHcC-------CHHHHHHHH
Q 003872 387 FRNGRAEAAYTLFCDLKKK--GK----F-----------V-----D---GITFSIVVLQLCREG-------QIEEALRLV 434 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~ 434 (790)
..+++.|...+.++... ++ + | + ...|...+..-...+ ..+.+..+|
T Consensus 255 --~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 255 --SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 01122222222221110 00 0 0 0 112333333222211 123455667
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHH-HHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTE-RLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
++.+.. .+-....|...+..+...|+.+.|. .++++.....
T Consensus 333 e~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~------------------------------------- 374 (679)
T 4e6h_A 333 MQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI------------------------------------- 374 (679)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------------------------------------
Confidence 766654 3336677777777777777777775 7777665421
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
|.+..+
T Consensus 375 --------------------------------------------------------------------------P~s~~L 380 (679)
T 4e6h_A 375 --------------------------------------------------------------------------PNSAVL 380 (679)
T ss_dssp --------------------------------------------------------------------------TTCHHH
T ss_pred --------------------------------------------------------------------------CCCHHH
Confidence 223445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC---------CC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGV---------HP------------VNYTYNSMMSSFVKKGYFNQAWGVLNEM 652 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 652 (790)
+-.++...-+.|+++.|..+|+.+.+... .| ....|...+....+.|..+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666667777788888888877765310 13 1235777777777778888888888888
Q ss_pred hhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 003872 653 GEKFCPTDIATYNVVIQGLGKM-GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP- 730 (790)
Q Consensus 653 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 730 (790)
.+.-......+|...+..-.+. ++.+.|.++|+..++. .+-+...|..++......|+.+.|+.+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 7651111222333222222233 4578888888888877 34466667777777777788888888888887653211
Q ss_pred -ChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 731 -DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 731 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
....|..++.-=.+.|+.+.+..+.++|.+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456777777777778888888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-10 Score=121.28 Aligned_cols=446 Identities=13% Similarity=0.030 Sum_probs=263.5
Q ss_pred CcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 003872 99 FLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQ---LGLAMS 175 (790)
Q Consensus 99 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 175 (790)
...+.+..++.....+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.+...|...+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566667766666 358999999999999999999999999999887 56677888888888888888 999999
Q ss_pred HHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccch--------HHHHHHHHHHHhcCCC-CCc-hhhHHHHHHH
Q 003872 176 ILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRR--------SEFKQVFERLKEQKEF-EFD-IYGYNICIHA 245 (790)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~li~~ 245 (790)
+|++.+.... ..|++..|...+....+.++. +.+.++|+......|. .++ ...|...+..
T Consensus 125 lfeRal~~~~----------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 125 VLARCLSKEL----------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHTCSSS----------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcC----------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 9998876310 127788888888776665543 3455788887776676 554 4677777765
Q ss_pred Hhc---------cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 246 FGC---------WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 246 ~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
... .++++.+..+|+.........-..+|......-...+. ..+.+++.+.
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------- 254 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------- 254 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------
Confidence 432 34567888899988853111112233222111111011 0011111110
Q ss_pred HhcCCHHHHHHHHHHHHH--CCCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHH
Q 003872 317 CKSYRMDDAMKIFSEMQY--NGLI---------------P-----D---TVVYNSLLNGMFKSR-------KVMEACQLF 364 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~--~~~~---------------p-----~---~~~~~~li~~~~~~~-------~~~~a~~l~ 364 (790)
..+++.|...+.++.. .++. | + ...|...+..--..+ ..+.+..+|
T Consensus 255 --~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 255 --SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 0111222222222110 0000 0 0 123444443322221 123455667
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 003872 365 EKMVQDGVRTSCWTHNILIDGLFRNGRAEAAY-TLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF- 442 (790)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~- 442 (790)
++.+... +-....|...+..+...|+.+.|. +++++.... ++.+...|-..+....+.|+++.|..+|+.+.....
T Consensus 333 e~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 333 MQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6666542 335666666666666777777775 777777654 223444555666666677777777777777765310
Q ss_pred --------cc------------CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccC
Q 003872 443 --------VV------------DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDY 502 (790)
Q Consensus 443 --------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 502 (790)
.| ....|...+....+.|+.+.|+.+|..+.+.. |.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--~~---------------------- 466 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--KL---------------------- 466 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG--GG----------------------
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC----------------------
Confidence 12 12356677777777788888888888876630 00
Q ss_pred CCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHh
Q 003872 503 TPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQ 582 (790)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 582 (790)
T Consensus 467 -------------------------------------------------------------------------------- 466 (679)
T 4e6h_A 467 -------------------------------------------------------------------------------- 466 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q 003872 583 GKGMGTFDIDMVNTFLSIFLAK-GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-- 659 (790)
Q Consensus 583 ~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-- 659 (790)
....+|...+..--+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|+........+
T Consensus 467 ------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 467 ------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp ------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred ------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 0011122222222222 3477778887777665 24455666677777777788888888888777763321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
....|..++..-.+.|+.+.+.++.+++.+..
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567777777777788888888888877764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-12 Score=119.44 Aligned_cols=199 Identities=9% Similarity=-0.050 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
++...+..+...+.+.|++++|+..|++..+.. +.++..+..+...+.+.|++++|...++++++. .
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------~ 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR------------T 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------C
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------C
Confidence 344556666666666677777777776666654 235566666666666677777777776666664 3
Q ss_pred CCCcchHHHHHHHHHhc-----------cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 197 LPGCVACNELLVALRKS-----------DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
+.+...+..+...+... |++++|+..++...+. -|-+...+..+...+...|++++|+..|++..+.
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33445566666666666 7778888877777752 2224566777777777777777777777777776
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..
T Consensus 148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5 466777777777777777777777777776653 4456666667777777777777777666543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-12 Score=131.77 Aligned_cols=375 Identities=11% Similarity=-0.026 Sum_probs=241.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh---HHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 205 ELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL---HTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 205 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.+...+.+.|++++|.+.|+...+ .+ +...+..+...|...|+. ++|..+|++..+. ++..+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 366777889999999999999987 34 344555566667777887 8999999998864 555666666655
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 282 CVVG-----KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM---DDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 282 ~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
...+ +.++|...|++..+.|. ++ .+..+...|...+.. ..+.+.+......| +......+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78899999999988763 33 566677777665543 34555565555544 34456666777777
Q ss_pred cCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--
Q 003872 354 SRKVMEACQ----LFEKMVQDGVRTSCWTHNILIDGLFRNG---RAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCRE-- 424 (790)
Q Consensus 354 ~~~~~~a~~----l~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 424 (790)
.+.++++.. +++..... +...+..|...|...| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 775544444 44443332 3337888888999999 999999999999998754 555445666666554
Q ss_pred --CCHHHHHHHHHHHHhCCCccCHHHHHHHHHH-H--HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcccccc
Q 003872 425 --GQIEEALRLVEEMEGRGFVVDLVTISSLLIG-F--HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKR 499 (790)
Q Consensus 425 --g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 499 (790)
+++++|..+|+... .| +...+..|... + ...+++++|...|++..+.+
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----------------------- 281 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----------------------- 281 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----------------------
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----------------------
Confidence 69999999999988 33 55666666666 4 46889999999999887643
Q ss_pred ccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhH
Q 003872 500 KDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGL 579 (790)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 579 (790)
T Consensus 282 -------------------------------------------------------------------------------- 281 (452)
T 3e4b_A 282 -------------------------------------------------------------------------------- 281 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003872 580 RVQGKGMGTFDIDMVNTFLSIFLAKG-----KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK----KGYFNQAWGVLN 650 (790)
Q Consensus 580 ~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 650 (790)
++..+..+...|. .| ++++|...|+... .| +...+..|...|.. ..++++|...|+
T Consensus 282 ----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 282 ----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp ----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 3344455666665 44 8999999999887 43 56677777777766 349999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 651 EMGEKFCPTDIATYNVVIQGLGK----MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 651 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+..+.|. ......|...|.. ..+.++|..+|+...+.+ .++.......+......++..+|.++.++...
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9998764 3345556666654 468999999999988876 23333333333333344567778888777664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-11 Score=117.15 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVI 668 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li 668 (790)
+..++..+...|...|++++|...|+.+.+.. +.+...+..+...|...|++++|..+++++.+.+..| +...+..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 45677888999999999999999999998775 4577889999999999999999999999998833334 566788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..|...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 99999999999999999999874 4568889999999999999999999999998742 34677888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCccc
Q 003872 749 KEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~t 769 (790)
++|.++++++.+. .|+...
T Consensus 226 ~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 226 DTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHHH--CTTSHH
T ss_pred HHHHHHHHHHHHH--CCCCHH
Confidence 9999999999865 455433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=119.58 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
+..+...|...|++++|...|+...+.. +.+...|..+...|...|++++|+..+++..+. .+.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHH
Confidence 3445555555555555555555555443 334455556666666666666666666666554 22344455555522333
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc-CCCCC------hHHHHHHHHHHh
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTS-GINPD------VVTFNTLIEVNG 743 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~------~~~~~~l~~~~~ 743 (790)
.+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+. .-.|+ ..+|..+...|.
T Consensus 155 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 346666666666666553 2334555555555555555 55566666655542 11122 145556666666
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 003872 744 KAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 744 ~~g~~~~A~~~~~~m~~~ 761 (790)
+.|++++|.+++++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 666666666666666643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-10 Score=113.98 Aligned_cols=155 Identities=12% Similarity=-0.012 Sum_probs=88.7
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 594 VNTFLSIFLA----KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK----KGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 594 ~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 3344444444 555555555555555543 44555555555555 666666666666666543 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 003872 666 VVIQGLGK----MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNT 737 (790)
Q Consensus 666 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 737 (790)
.+...|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 55555555 566666666666665543 34555556666666 666666666666666542 2445555
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHhC
Q 003872 738 LIEVNGK----AGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 738 l~~~~~~----~g~~~~A~~~~~~m~~~ 761 (790)
+...|.+ .|++++|++++++..+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666666 66666666666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-11 Score=115.76 Aligned_cols=201 Identities=11% Similarity=-0.061 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
+..+..+...+...|++++|...++.+.... +.+..++..+...|...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4445555555555555555555555555443 22445555555555555555555555555554431 234444444444
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNIC 242 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 242 (790)
+...|++++|...+++ +.+ .+..| +...+..+
T Consensus 115 ~~~~g~~~~A~~~~~~----------------------------------------------~~~-~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLE----------------------------------------------ASQ-DTLYPERSRVFENL 147 (252)
T ss_dssp HHHTTCHHHHHHHHHH----------------------------------------------HTT-CTTCTTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH----------------------------------------------HHh-CccCcccHHHHHHH
Confidence 4444444444444444 432 11112 34445555
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM 322 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 322 (790)
...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 5555555666666666665554421 134555555556666666666666666655442 33445555555555566666
Q ss_pred HHHHHHHHHHHHC
Q 003872 323 DDAMKIFSEMQYN 335 (790)
Q Consensus 323 ~~a~~~~~~m~~~ 335 (790)
++|.++++++.+.
T Consensus 226 ~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 226 DTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-11 Score=112.99 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-CHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK-GYFNQAWGVLNEMGEKFCPT-DIATYNVV 667 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~l 667 (790)
+...+..+...|...|++++|...++.+.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 45677888999999999999999999998775 55778899999999999 99999999999999832233 36778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
...|...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.....+...+..+...+...|+
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999874 446888999999999999999999999999885322467778888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCccc
Q 003872 748 LKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 748 ~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++|..+++.+.+. .|+...
T Consensus 198 ~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 198 AQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHH
Confidence 99999999998754 465544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-11 Score=113.58 Aligned_cols=200 Identities=10% Similarity=-0.072 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++++. .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------~~~ 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------KPD 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------CCC
Confidence 4455556666666666666666666666553 234555666666666666666666666666553 223
Q ss_pred CcchHHHHHHHHHhc-cchHHHHHHHHHHHhcCCC-CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 199 GCVACNELLVALRKS-DRRSEFKQVFERLKEQKEF-EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+...+..+...+... |++++|...++.+.+ .+. +.+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHH
Confidence 344455555555555 566666666655554 222 22245555566666666666666666666655421 13555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHE-PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
+...+...|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5566666666666666666655442 2 3444555555555556666666666655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-10 Score=110.61 Aligned_cols=224 Identities=11% Similarity=-0.121 Sum_probs=163.5
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHR 310 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 310 (790)
+..++..+...+...|++++|...|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666677777777777777777663 245566666677777 777777777777776654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003872 311 IIIQGCCK----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWTHNIL 382 (790)
Q Consensus 311 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~l 382 (790)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 778888888888877765 45666677
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 383 IDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 383 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 45667777777777 888888888888887765 3566777777
Q ss_pred HHHh----cCCchHHHHHHHHHHhCC
Q 003872 455 GFHK----YGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 455 ~~~~----~g~~~~a~~~~~~~~~~~ 476 (790)
.|.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-12 Score=124.49 Aligned_cols=249 Identities=8% Similarity=-0.034 Sum_probs=191.2
Q ss_pred HhccchHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFE--FDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK 288 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 288 (790)
...|++++|+..|+.+.+..... .+...+..+...+...|++++|...|+++.+... .+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 34588999999999998742222 2467888999999999999999999999988743 36888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 289 DALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
+|...|++..+.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998764 456788899999999999999999999999875 3555555555556677799999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV---DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 445 (790)
... +++...+ .++..+...++.+.|+..+.......... +...+..+...+...|++++|...++++.+.... +
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 248 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N 248 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h
Confidence 653 3343333 46777788888999999998887653211 1467888889999999999999999999876422 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHH
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
+.....++...|++++|.+.+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 233355666777777776665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-11 Score=120.52 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=164.8
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGK-IDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
...+|..+..++.+.|++++|+..++.+.+.+. -+..+|..+..++...|+ +++|+..|+++.+... .+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 346677777788888888888888888888763 367788888888888886 8888888888888753 3677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
.++...|++++|+..|+++++. .+.+...|..+..++.+.|++++|+..|+.+.+. -+-+...|+.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~ 239 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQ 239 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8888888888888888888876 4556677777777888888888888888877763 2235667777
Q ss_pred HHHHHhc-cCChHHH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 242 CIHAFGC-WGDLHTS-----LRLFKEMKEKGLVPDLHTYNSLIQVLCVVG--KVKDALIVWEELKGSGHEPNEFTHRIII 313 (790)
Q Consensus 242 li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li 313 (790)
+..++.. .|..++| +..|++..+.... +...|..+..++...| ++++|.+.+.++ +.. +.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHH
Confidence 7777777 4554666 4666666665322 4556666666666666 467777777666 322 44556666666
Q ss_pred HHHHhcC---------CHHHHHHHHHHH
Q 003872 314 QGCCKSY---------RMDDAMKIFSEM 332 (790)
Q Consensus 314 ~~~~~~~---------~~~~a~~~~~~m 332 (790)
.+|.+.+ ..++|.++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 6666653 246677777776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=9e-11 Score=119.98 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQ-LGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
...+|..+...+...|++++|++.|+++.+... .+..+|+.+..++...|+ +++|+..|+++++. .
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------------~ 162 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------------Q 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------------C
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------------C
Confidence 346778888889999999999999999999863 477889999999999996 99999999999986 4
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.+...|+.+...+...|++++|+..|+++.+. -+-+...|..+..++...|++++|+..|+++.+.... +...|+.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~ 239 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQ 239 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 566788888888888889999999998888863 2336778888888888888888888888888877543 6777888
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 277 LIQVLCV-VGKVKDA-----LIVWEELKGSGHEPNEFTHRIIIQGCCKSY--RMDDAMKIFSEMQYNGLIPDTVVYNSLL 348 (790)
Q Consensus 277 ll~~~~~-~~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li 348 (790)
+..++.. .|..++| +..+++..+.. +-+...|..+...+...| ++++|++.+.++ +. -+.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 8888887 5554666 46677766653 445667777777777766 577777777776 32 233456667777
Q ss_pred HHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 003872 349 NGMFKSR---------KVMEACQLFEKM-VQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 349 ~~~~~~~---------~~~~a~~l~~~~-~~~~~~~~~~~~~~li~~~ 386 (790)
..|.+.| ..++|.++++.+ .+.. +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7776653 247777777777 4432 22334455444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-11 Score=116.51 Aligned_cols=236 Identities=10% Similarity=-0.037 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCC
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFE 233 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (790)
+..+......+...|++++|+..|+++++. .+.+...+..+...+...|++++|.+.++...+ .+-.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~ 69 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA 69 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc
Confidence 344556666777778888888888777764 233445677777777788888888888877775 2211
Q ss_pred Cc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 234 FD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRI 311 (790)
Q Consensus 234 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 311 (790)
++ ...|..+...+...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 147 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYE 147 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence 21 233677777777777888887777777765322 45667777777777777777777777776652 444555655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHH
Q 003872 312 IIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK---VMEACQLFEKMVQDG-VRTS------CWTHNI 381 (790)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~l~~~~~~~~-~~~~------~~~~~~ 381 (790)
+...+...+++++|.+.|++..+.. +.+...+..+...+...++ .++|...+++..+.. -.|+ ..+|..
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 5523334457777777777776542 1234555556666666665 566666666655421 0122 134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
+...|...|++++|.+.+++..+.
T Consensus 227 l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 227 IAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566666666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=121.90 Aligned_cols=222 Identities=10% Similarity=-0.055 Sum_probs=132.8
Q ss_pred hcCCcchHHHHHHHhhhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 96 RAGFLEEVPSLLNSMQEDDV---VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776532 1235667777777778888888888888877764 2356777777777888888888
Q ss_pred HHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh
Q 003872 173 AMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL 252 (790)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 252 (790)
|...|+++++. .+.+...+..+...|...|++++|...|+.+.+. .|+.......+..+...|++
T Consensus 96 A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 96 AYEAFDSVLEL------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHHHHH------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhc------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCH
Confidence 88877777765 2334556666666677777777777777666652 23333333333344555666
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 253 HTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE---PNEFTHRIIIQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 253 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 329 (790)
++|...+++..... +++...+ .++..+...++.++|...+.+....... .+...+..+...|...|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666665555442 1222222 2445555555666666666665433100 01244555555555555566666555
Q ss_pred HHHHHC
Q 003872 330 SEMQYN 335 (790)
Q Consensus 330 ~~m~~~ 335 (790)
++..+.
T Consensus 239 ~~al~~ 244 (275)
T 1xnf_A 239 KLAVAN 244 (275)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-11 Score=117.50 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..+
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 334444444444444444444444444331 2233344444444444444444444444444432 2234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 707 LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+...|++++|...++++.+.. +.+..+|..+..++...|++++|.+.++++.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444444444444444321 1123444444444444455555555544444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-11 Score=116.27 Aligned_cols=202 Identities=15% Similarity=0.054 Sum_probs=119.4
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.++..|..+...+...|++++|...++.+.... +.+..++..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566667777778888888888888887764 3367777788888888888888888888887764 23667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..+...|++++|...++++++. .+.+...+..+...+...|++++|...++.+.+. .+.+...+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 164 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQ 164 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHH
Confidence 8888888888888888777765 2334455666666666666666666666666542 2224455566
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
+...+...|++++|...++++.+... .+..++..+..++...|++++|...++++.+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666666666666666655422 24555555666666666666666666665544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=124.99 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+.... ++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 345678889999999999999999988764310 111 237788888999999999999999988754111 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP- 730 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 730 (790)
..++..+...|...|++++|...++++.+......+ ..++..+..+|...|++++|...+++..+. +..+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 457788888999999999999999998765311222 557788889999999999999999987752 2122
Q ss_pred ChHHHHHHHHHHhccCCH
Q 003872 731 DVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 731 ~~~~~~~l~~~~~~~g~~ 748 (790)
...++..+...+...|+.
T Consensus 346 ~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhhHh
Confidence 245666777777777764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-11 Score=127.27 Aligned_cols=277 Identities=13% Similarity=0.045 Sum_probs=193.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-ccCHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDG----ITFSIVVLQLCREGQIEEALRLVEEMEGR----GF-VVDLVTI 449 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~ 449 (790)
+..+...+...|++++|+..|+++.+.... +. ..+..+...+...|++++|...+++..+. +. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334455566667777777777766665322 22 34666666677777777777777766543 11 2234567
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..+...|...|++++|...+++..+....
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------------------- 158 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQ--------------------------------------------------- 158 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 77788888888988888888877651000
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC---
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK--- 606 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 606 (790)
.+..+....++..+...|...|+
T Consensus 159 ------------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 159 ------------------------------------------------------LGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp ------------------------------------------------------HTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------hhchHHHHHHHHHHHHHHHHcCcccc
Confidence 00011234567788888888899
Q ss_pred --------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HH
Q 003872 607 --------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IA 662 (790)
Q Consensus 607 --------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~ 662 (790)
+++|...+++..+. +- .....++..+...|...|++++|...+++..+.... ++ ..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 89999888776542 11 122347788888999999999999999988764211 12 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYL----DVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DVV 733 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 733 (790)
++..+...|...|++++|...++++........ ...++..+..+|...|++++|...+++.... +..+ ...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 778888999999999999999999877531111 2567888999999999999999999998752 1111 145
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
++..+..+|.+.|++++|.+++++..+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7888999999999999999999998753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=125.88 Aligned_cols=280 Identities=15% Similarity=0.072 Sum_probs=192.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcc-C
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVD----GITFSIVVLQLCREGQIEEALRLVEEMEGR----GFVV-D 445 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~ 445 (790)
....+......+...|++++|...|++..+.... + ...+..+...+...|++++|...++++... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555666666677776666666655322 2 234556666667777777777777665432 2111 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccc
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (790)
...+..+...+...|++++|...+++..+.. +..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-------------------------------------------- 120 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL-------------------------------------------- 120 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------------------------------------
Confidence 4566777778888888888888888766510 000
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcC
Q 003872 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKG 605 (790)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 605 (790)
+.......++..+...|...|
T Consensus 121 -----------------------------------------------------------~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 121 -----------------------------------------------------------NDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------ccccchHHHHHHHHHHHHHcC
Confidence 000112446677788888888
Q ss_pred C--------------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CC
Q 003872 606 K--------------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PT 659 (790)
Q Consensus 606 ~--------------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 659 (790)
+ +++|...++...+. +- +....++..+...|...|++++|...+++..+... .+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888776432 11 11234678888899999999999999998875411 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C
Q 003872 660 D----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----G 727 (790)
Q Consensus 660 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 727 (790)
+ ..++..+...|...|++++|...+++........++ ..++..+..+|...|++++|...+++..+. +
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 237788889999999999999999998765311112 567888999999999999999999998752 1
Q ss_pred CCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 728 INPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 728 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
-.+. ..++..+..+|...|++++|.+++++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 56788899999999999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-11 Score=126.40 Aligned_cols=137 Identities=10% Similarity=-0.020 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-C----
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-PV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-T---- 659 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~---- 659 (790)
....+..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... .
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456788899999999999999999887654210 11 237788889999999999999999988764211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...++..+...|...|++++|...++++........+ ..++..+..+|...|++++|...|++..+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1457788889999999999999999998765311112 447788899999999999999999998863
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-11 Score=121.45 Aligned_cols=275 Identities=15% Similarity=0.063 Sum_probs=187.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcc-CHHHHHH
Q 003872 381 ILIDGLFRNGRAEAAYTLFCDLKKKGKFVD----GITFSIVVLQLCREGQIEEALRLVEEMEGR----GFVV-DLVTISS 451 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ 451 (790)
.....+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +..+ ....+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344556666666666666666654322 2 244556666666777777777776665432 1111 2456677
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccC
Q 003872 452 LLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLG 531 (790)
Q Consensus 452 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (790)
+...+...|++++|...+++..+.....
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------------- 116 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISREL---------------------------------------------------- 116 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHh----------------------------------------------------
Confidence 7778888888888888888765410000
Q ss_pred CCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC-----
Q 003872 532 SGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK----- 606 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 606 (790)
+.......++..+...|...|+
T Consensus 117 -----------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 117 -----------------------------------------------------NDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred -----------------------------------------------------cCchHHHHHHHHHHHHHHHcCcccccc
Confidence 0001123456677777778888
Q ss_pred ---------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----H
Q 003872 607 ---------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----I 661 (790)
Q Consensus 607 ---------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~ 661 (790)
+++|...++...+. +. .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88888888776432 11 122346778888999999999999999988654111 12 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-Ch
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DV 732 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 732 (790)
.++..+...|...|++++|...+++.........+ ..++..+..+|...|++++|...++++.+. +-.+ ..
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 37788888999999999999999998765311122 567788889999999999999999988752 1111 14
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.++..+...|.+.|++++|.+++++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 57788999999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-10 Score=109.96 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV-NY-TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.+..+|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 173 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 35667888999999999999999999999985 444 43 89999999999999999999999999874 344555554
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--ChHHHHHHHHHH
Q 003872 667 VIQGLG-KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG-INP--DVVTFNTLIEVN 742 (790)
Q Consensus 667 li~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~ 742 (790)
...... ..|++++|..+|+++++.. +-+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 443322 3699999999999999874 4478899999999999999999999999999863 455 367889999999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 743 GKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
.+.|+.++|..+++++.+. .|+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~--~p~~ 274 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA--FREE 274 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH--TTTT
T ss_pred HHcCCHHHHHHHHHHHHHH--cccc
Confidence 9999999999999999865 4543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-10 Score=105.48 Aligned_cols=172 Identities=14% Similarity=0.076 Sum_probs=151.2
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++.+|..+...|...|++++|+..|++..+.. +-+...|..+...|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367789999999999999999999999998876 5678889999999999999999999999998873 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..+...++++.|...++++.... +.+...+..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 89999999999999999999874 5578889999999999999999999999999852 33578899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 003872 749 KEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~ 767 (790)
++|++.+++..+. .|+.
T Consensus 158 ~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHHhC--CccC
Confidence 9999999999864 5654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-09 Score=109.13 Aligned_cols=220 Identities=7% Similarity=0.003 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 393 EAAYTLFCDLKKKGKFVDGITFSIVVLQLC-------REGQI-------EEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
++|..+|++....... +...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666554222 4555555555544 34664 8888888888873122256678888888888
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|++++|..+|+++.+..
T Consensus 112 ~~~~~~A~~~~~~al~~~-------------------------------------------------------------- 129 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------------------------------------------------------------- 129 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHhcc--------------------------------------------------------------
Confidence 899999999988887621
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDID-MVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
+.++. +|..++..+.+.|++++|..+|+..
T Consensus 130 -------------------------------------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 130 -------------------------------------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp -------------------------------------------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -------------------------------------------------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11232 6777888888889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-
Q 003872 618 TDMGVHPVNYTYNSMMSSFV-KKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL- 695 (790)
Q Consensus 618 ~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p- 695 (790)
.+.. +.+...|........ ..|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++++......|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 8765 345555544433322 3699999999999998863 44788899999999999999999999999998632454
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 696 -DVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 696 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=117.26 Aligned_cols=137 Identities=12% Similarity=-0.016 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG----V-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...+...|++++|...++...+.. . .....++..+...+...|++++|...+++..+.... .+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 34567788899999999999999998876431 0 111237788888999999999999999988654111 12
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
..++..+...|...|++++|...++++.+......+ ..++..+..+|...|++++|...+++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457778888999999999999999998765311112 447778899999999999999999999863
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-10 Score=116.50 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=175.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCcc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGR----GFVV-DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEAT 491 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (790)
....+...|++++|...+++..+. +..+ ...++..+...|...|+++.|...+.+..+.....+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE----------- 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------
Confidence 445567889999999999988764 2222 346788888899999999999999888765100000
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
T Consensus 178 -------------------------------------------------------------------------------- 177 (383)
T 3ulq_A 178 -------------------------------------------------------------------------------- 177 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-P----VNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~ 646 (790)
...+....+++.+...|...|++++|...|+...+.... + ...++..+...|...|++++|+
T Consensus 178 -------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 178 -------------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 000123456788999999999999999999887643111 1 1247888999999999999999
Q ss_pred HHHHHHhhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC---HHH
Q 003872 647 GVLNEMGEK----FC-PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD---VVMYNTLINVLGKAGR---FDE 715 (790)
Q Consensus 647 ~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~ 715 (790)
..+++..+. +. +....++..+...|.+.|++++|...+++..+......+ ...+..+...|...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999998772 23 334667889999999999999999999998765211112 2335667888888899 777
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
|..++++. +..|+ ...+..+...|...|++++|.+++++..+
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777766 23333 45777899999999999999999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.6e-10 Score=101.28 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=121.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
|.++.++..+...|.+.|++++|...+....... +.+...+..+...+...++++.|...+.+..+.. +.+...+..+
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~l 113 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKL 113 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4467788899999999999999999999988775 5567778888889999999999999999998863 4578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
...|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 999999999999999999999874 457888999999999999999999999999874 5554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-10 Score=114.28 Aligned_cols=129 Identities=7% Similarity=0.016 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhh
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQ-----DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK----GKFVDGIT 413 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 413 (790)
++..+...|...|++++|...+++..+ ...+....++..+...+.+.|++++|...+++.... +.......
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444555555555555555555443 111222344555555555555555555555554432 11111122
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhCCCcc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 414 FSIVVLQLCREGQ---IEEALRLVEEMEGRGFVV-DLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 414 ~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
+..+...+...|+ +++|+.++++. +..+ ....+..+...|...|++++|...+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555555 45555555443 2222 233455566666777777777776666654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-10 Score=119.08 Aligned_cols=163 Identities=9% Similarity=-0.088 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHhhcCCCC
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK---------GYFNQAWGVLNEMGEKFCPT 659 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~ 659 (790)
.++.++..+...|...|++++|...|+...+.. |+...+..+...|... |++++|+..+++..+.. +.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 356678888999999999999999999988774 6678888888899998 99999999999998873 44
Q ss_pred CHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 660 DIATYNVVIQGLGKM--------GRADLASTILDKLMKQGGGY---LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 660 ~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+...|..+..+|... |++++|...|+++.+.. + -+...|..+..+|...|++++|...|++..+..
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD- 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 688888999999888 99999999999999864 2 378889999999999999999999999998752
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 729 NPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 729 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
+-+...+..+..++...|++++|++.+.+
T Consensus 289 p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 289 PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22466788888999999999999875543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-09 Score=99.24 Aligned_cols=167 Identities=18% Similarity=0.094 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567788899999999999999999988765 4577888999999999999999999999998873 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
.|...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999874 5678889999999999999999999999998863 335788999999999999999
Q ss_pred HHHHHHHHHHhC
Q 003872 750 EAHYFLKMMLDS 761 (790)
Q Consensus 750 ~A~~~~~~m~~~ 761 (790)
+|.++++++.+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-09 Score=108.45 Aligned_cols=236 Identities=10% Similarity=-0.026 Sum_probs=173.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCc-c----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFV-V----DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEAT 491 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (790)
....+...|++++|...++++.+.... + ...++..+...|...|+++.|...+.+..+......
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----------- 175 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP----------- 175 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------
Confidence 344566789999999999998765211 1 245778888899999999999999988765100000
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
T Consensus 176 -------------------------------------------------------------------------------- 175 (378)
T 3q15_A 176 -------------------------------------------------------------------------------- 175 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVH-PVNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~ 646 (790)
........+++.+...|...|++++|...|+...+. +-. ....++..+...|...|++++|+
T Consensus 176 -------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 176 -------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 000113556788999999999999999999887653 211 12356778889999999999999
Q ss_pred HHHHHHhh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCC---HHH
Q 003872 647 GVLNEMGE-----KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY--L-DVVMYNTLINVLGKAGR---FDE 715 (790)
Q Consensus 647 ~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~ 715 (790)
..+++..+ .. +....++..+...|.+.|++++|...+++..+..... + ....+..+...|...|+ +++
T Consensus 243 ~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 243 EHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999877 32 3336788889999999999999999999998864221 2 23456666667777888 777
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
|..++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 322 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88777763 22333 45667899999999999999999998863
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-11 Score=119.68 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=132.6
Q ss_pred CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----
Q 003872 80 YKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQED-------DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---- 148 (790)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 148 (790)
.+....++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|.+.|++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3356788889999999999999999999998873 23345678889999999999999999999998875
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHH
Q 003872 149 --GT-SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFER 225 (790)
Q Consensus 149 --~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (790)
+. +....++..+...+...|++++|...++++++......... .+.....+..+...+...|++++|.+.++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD----HPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 22345788999999999999999999999887531100000 122345567777778888888888888877
Q ss_pred HHhcC-----C-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 226 LKEQK-----E-FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 226 ~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
..+.. + .+....++..+...|...|++++|...++++.+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76520 1 122345667777777777777777777777764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-08 Score=102.76 Aligned_cols=274 Identities=13% Similarity=0.015 Sum_probs=183.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCc-cCHHHHHHHH
Q 003872 383 IDGLFRNGRAEAAYTLFCDLKKKGKFVDGI----TFSIVVLQLCREGQIEEALRLVEEMEGR----GFV-VDLVTISSLL 453 (790)
Q Consensus 383 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~ 453 (790)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++.... +.. ....++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777777777777766653222221 3455556677788888888888776543 111 0123456677
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCC
Q 003872 454 IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533 (790)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (790)
..+...|++++|...+++..+....
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~------------------------------------------------------- 125 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINE------------------------------------------------------- 125 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7888999999999998887651000
Q ss_pred CCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHH
Q 003872 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGM-GTFDIDMVNTFLSIFLAKGKLNLACK 612 (790)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~ 612 (790)
..+. .+.....+..+...+...|++++|..
T Consensus 126 -------------------------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 126 -------------------------------------------------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp -------------------------------------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------------------------hccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 0000 01234456678888999999999999
Q ss_pred HHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHH
Q 003872 613 LFEIFTDMGVH----PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYN----VVIQGLGKMGRADLAST 682 (790)
Q Consensus 613 ~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~ 682 (790)
.++...+.... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99987654221 1234677788889999999999999998875422211 11111 23344778999999999
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCh-HHHHHHHHHHhccCCHHHHHHHH
Q 003872 683 ILDKLMKQGGGY--LDVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPDV-VTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 683 ~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
.+++........ .....+..+..++...|++++|...+++... .|..++. ..+..+..++...|+.++|...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 998876543111 1133567788889999999999999998865 2322232 36677788899999999999999
Q ss_pred HHHHh
Q 003872 756 KMMLD 760 (790)
Q Consensus 756 ~~m~~ 760 (790)
++..+
T Consensus 317 ~~al~ 321 (373)
T 1hz4_A 317 LDALK 321 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=115.07 Aligned_cols=213 Identities=10% Similarity=-0.062 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL-HTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVW 294 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (790)
++++...++.... ..+.+...+..+...+...|++ ++|.+.|++..+.... +...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666665553 2334677788888888888888 8888888888776322 5677888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 003872 295 EELKGSGHEPNEFTHRIIIQGCCKS---------YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKS--------RKV 357 (790)
Q Consensus 295 ~~~~~~g~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~ 357 (790)
++..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+...|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888776 46667777777777777 78888888888877653 22566677777777776 777
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 358 MEACQLFEKMVQDGVR--TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 358 ~~a~~l~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
++|+..|+...+.... -+...|..+...|...|++++|...|++..+.... +...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777765310 36667777777777777777777777777665332 45556666666666777766665443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=115.31 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCC
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEEL-------GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTAD 190 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (790)
...++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++++........
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4577888999999999999999999999874 233345678999999999999999999999988753111000
Q ss_pred CcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC-----CC-CCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 191 NSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK-----EF-EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
. .+.....+..+...|...|++++|...++...+.. +. +.....+..+...+...|++++|..+++++.+
T Consensus 106 ~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 D----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred C----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 12235567778888888888888888888876531 22 22345667777777778888888887777765
Q ss_pred C------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 265 K------GLVP-DLHTYNSLIQVLCVVGKVKDALIVWEELKG 299 (790)
Q Consensus 265 ~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 299 (790)
. +..| ...++..+...+...|++++|...++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1122 234566666777777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=118.58 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=149.7
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.|.++.+++.+...|.+.|++++|++.|++.++.. +-+...|..|..+|.+.|++++|+..|++.++.. +-+...|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35678899999999999999999999999998875 4567889999999999999999999999999873 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhcc
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKA 745 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 745 (790)
+..+|...|++++|++.|+++++.. +-+...|+.+..+|...|++++|+..|++..+. .|+ ...|..+..++...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999999874 446789999999999999999999999999985 454 78899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 746 GRLKEAHYFLKMMLD 760 (790)
Q Consensus 746 g~~~~A~~~~~~m~~ 760 (790)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-08 Score=101.85 Aligned_cols=169 Identities=14% Similarity=-0.005 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLSPN----VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
.....+...|++++|...+++........+.. ++..+...+...|+++.|...+++.++....... ....
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~ 92 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------WHYA 92 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------HHHH
Confidence 33445556677777777777766653222222 3455556666777777777777776654321100 0001
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhc---CCCC--C-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC----
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQ---KEFE--F-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP---- 269 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---- 269 (790)
..++..+...+...|++++|...++...+. .+.+ | ....+..+...+...|++++|...+++..+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 122344555566666666666666655431 1111 2 23344555566666666666666666655432111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
...++..+...+...|++++|...+++..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344455555566666666666665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=104.71 Aligned_cols=246 Identities=9% Similarity=-0.055 Sum_probs=124.4
Q ss_pred cchhhHHHHHHHH--HhcCCcchHHHHHHHhhhC--CCCCCHH--HHHHHHHH--HHhcCChHHHH---------HHHHH
Q 003872 82 HTACTYSHIFRTV--CRAGFLEEVPSLLNSMQED--DVVVDSE--TFKLLLEP--CIKSGKIDFAI---------EILDY 144 (790)
Q Consensus 82 ~~~~~~~~l~~~~--~~~~~~~~a~~l~~~~~~~--~~~~~~~--~~~~li~~--~~~~~~~~~a~---------~~~~~ 144 (790)
++..+-+.+-..+ .+.+++++|..+++++... ....+.. .|-.++.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444445555555 6788888998888876552 1222332 23333322 11112333333 56666
Q ss_pred HHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHH
Q 003872 145 MEELGTSLSPN----VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFK 220 (790)
Q Consensus 145 ~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 220 (790)
+.....+.+.. .+......+...|++++|...|+++.+....... .......+..+...|...|++++|.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------DIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 54422111111 1223344556778888888888887664221100 1112345566666677777777777
Q ss_pred HHHHHHHhcCCC----CC-chhhHHHHHHHHhccCChHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHH
Q 003872 221 QVFERLKEQKEF----EF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEK----GLV-PDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 221 ~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~~~~~~a 290 (790)
..++...+...- .+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 666665542111 11 1345556666666666666666666655432 100 0123445555555666666666
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 291 LIVWEELKG-----SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 291 ~~~~~~~~~-----~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
.+.+++..+ .. +....++..+...+.+.|++++|...+++..+
T Consensus 242 ~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666655543 21 12234445555555555555555555555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=92.93 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~ 118 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGV 118 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHH
Confidence 45677888899999999999999999998775 557788899999999999999999999999887 3457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.|...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999874 557888999999999999999999999998863
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-08 Score=96.27 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=147.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++..+......+...|++++|...|+...+...+++...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788889999999999999999999999887643777888889999999999999999999999863 3356788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDV-------VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD---VVTFNT 737 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 737 (790)
...|...|++++|...+++.++.. +.+. ..|..+...+...|++++|...|+++.+. .|+ ...|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999874 3344 55788888899999999999999999874 555 567888
Q ss_pred HHHHHhccCCH---------------------------HHHHHHHHHHHhCCCCCCccc
Q 003872 738 LIEVNGKAGRL---------------------------KEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 738 l~~~~~~~g~~---------------------------~~A~~~~~~m~~~~~~p~~~t 769 (790)
+..++...|+. ++|+..+++..+. .|+...
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 88888888887 8899999999864 566543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9e-09 Score=101.53 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=137.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM------G-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKF----- 656 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 656 (790)
....++..+...|...|++++|...++...+. + .+....++..+...|...|++++|...+.++.+..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 35677889999999999999999999988654 1 13345678889999999999999999999987651
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 003872 657 --CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ-----GGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTS-- 726 (790)
Q Consensus 657 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 726 (790)
.+....++..+...|...|++++|...++++.+. ++..| ...++..+..+|...|++++|..+++++.+.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1223567888899999999999999999998876 11123 3567888999999999999999999988752
Q ss_pred ----------------------------------------------CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 727 ----------------------------------------------GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 727 ----------------------------------------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.......++..+..+|.+.|++++|..++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111245778889999999999999999998874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-08 Score=92.58 Aligned_cols=99 Identities=11% Similarity=-0.142 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
++..+......+...|++++|...|+...+...+++...+..+..++...|++++|++.|++..+... .+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 33444455555555555555555555555544323444444455555555555555555555554331 13344555555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~ 182 (790)
.+...|++++|...+++.++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-08 Score=111.19 Aligned_cols=164 Identities=13% Similarity=0.014 Sum_probs=82.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
++.+|+.+..++.+.|++++|+..|+...+... -+..++..+..+|.+.|++++|++.|++..+... .+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 345555555555566666666666655555432 2455555555555556666666666655555432 24455555555
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
+|...|++++|++.|+++++. .+.+...++.+...|.+.|++++|++.|++..+. -+-+...|..+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L 151 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNL 151 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhh
Confidence 555555555555555555553 2223344444444444444444444444444431 11123344444
Q ss_pred HHHHhccCChHHHHHHHHHH
Q 003872 243 IHAFGCWGDLHTSLRLFKEM 262 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m 262 (790)
...+...|++++|.+.+++.
T Consensus 152 ~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHH
Confidence 44444444444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=91.86 Aligned_cols=179 Identities=9% Similarity=-0.025 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV---NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP--TDI 661 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~ 661 (790)
.+.++..+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+.... ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 45577788889999999999999999999998864 233 567888889999999999999999999986321 224
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCHHHH---------------HHHHHHHHhcCCHHHHHH
Q 003872 662 ATYNVVIQGLGK--------MGRADLASTILDKLMKQGGGYLDVVMY---------------NTLINVLGKAGRFDEANM 718 (790)
Q Consensus 662 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~~---------------~~li~~~~~~g~~~~A~~ 718 (790)
..+..+..++.. .|++++|...|+++++..+-.+..... ..+..+|.+.|++++|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567777888888 999999999999999875222222211 456788999999999999
Q ss_pred HHHHHHhcCCCC--ChHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhCCCCCCcc
Q 003872 719 LFEQMRTSGINP--DVVTFNTLIEVNGKA----------GRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 719 ~~~~m~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.|+++.+..... ....+..+..+|... |++++|+..++++.+. .|+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 999998742111 245677888888866 8999999999999865 56654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-08 Score=95.90 Aligned_cols=184 Identities=14% Similarity=0.034 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-C---
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVHP-VNYTYNSMMSSFVKK-GYFNQAWGVLNEMGEKFCPT-D--- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~--- 660 (790)
..+++.+...|...|++++|+..|+...+. |-.. -..+++.+...|... |++++|+..|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 456788889999999999999988877543 2110 135788888999996 99999999999987652111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV-----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV- 733 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 733 (790)
..+++.+...|...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++..+ +.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCC
Confidence 3568888999999999999999999999865222221 1567788889999999999999999876 344321
Q ss_pred -----HHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHH
Q 003872 734 -----TFNTLIEVNG--KAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREI 780 (790)
Q Consensus 734 -----~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~ 780 (790)
.+..++.++. ..+++++|+..++++.. +.|+. -.++..+-+.+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~--~~~~~~~k~~~ 284 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK--ITILNKIKESI 284 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH--HHHHHHHHHHh
Confidence 3445566664 45778999988877752 34433 23444444444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=100.74 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=157.7
Q ss_pred hcCCcchHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CC-CCCHHHHHHHH
Q 003872 96 RAGFLEEVPSLLNSMQE-------DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL------GT-SLSPNVYDSVL 161 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 161 (790)
..|+++.|+.+++...+ .+.+....++..+...|...|++++|++.|+++... +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666665554 222335678888999999999999999999998865 22 22345789999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc------CCCCCc
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ------KEFEFD 235 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 235 (790)
..+...|++++|...+.++++......... .+.....+..+...|...|++++|...++...+. ...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKF----HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999987532110000 1234567888999999999999999999998763 112224
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHC-------CCCCCH-hHHHHHHHHHHhcCC------HHHHHHHHHHHHhCC
Q 003872 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEK-------GLVPDL-HTYNSLIQVLCVVGK------VKDALIVWEELKGSG 301 (790)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~-~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~g 301 (790)
..++..+...|...|++++|..++++..+. ...+.. ..+..+...+...+. +..+...++.....
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD- 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-
Confidence 678889999999999999999999998763 122222 233333333333222 22222222222111
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
.+....++..+...|...|++++|..++++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122345788888999999999999999998765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-07 Score=81.45 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+..++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 4445555555566666666666555442 2244555555556666666666666666665542 334555556666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..|++++|.++++++.... +.+...+..+...+.+.|++++|..+++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665532 22355556666666666666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=81.04 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788999999999999999999998765 4577888889999999999999999999998874 44678888999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...|++++|.++++++.... +.+...+..+..++...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999999874 456788899999999999999999999999874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-06 Score=91.00 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
+.+.|..+|+...+.. +-++..|...++...+.|+.+.|..+|+.+.+ ....|...+.--...|+.+.+.++++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5788888888876653 23345566677777788888888888888732 46778888777777788888888888
Q ss_pred HHHH
Q 003872 686 KLMK 689 (790)
Q Consensus 686 ~~~~ 689 (790)
++..
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-06 Score=89.45 Aligned_cols=222 Identities=8% Similarity=-0.027 Sum_probs=120.8
Q ss_pred hcc-chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHH
Q 003872 212 KSD-RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK-VKD 289 (790)
Q Consensus 212 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~ 289 (790)
+.| +++.|..+|+.+.... |. |+++.+..+|+..... .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 3777777777777531 11 8899999999998875 5788888888887777663 455
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 290 ALIVWEELKGS-GH-EPNEFTHRIIIQGCC----KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 290 a~~~~~~~~~~-g~-~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
...+|+..... |. ..+...|...+..+. ..++.+.+.++|++........-...|..... +....+...+..+
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence 67777776543 43 346677777776654 23567788888888886311111112222211 1111122222222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-------CHHHHHHHHHH
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG-------QIEEALRLVEE 436 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~ 436 (790)
+.+.. +.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22211 122223333332221100012234444333322211 13456677887
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 437 MEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 437 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
++... +.+...|...+..+...|+.+.|..++++....
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77653 335777777777778888888888888888775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=88.55 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHhh
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNS----------------MMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
+..+......+...|++++|...|+...+.. +-+...|.. +...|.+.|++++|+..|++.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344456677889999999999999998764 334556666 88899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCh
Q 003872 655 KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR--FDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 655 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 732 (790)
.. +.+...+..+...|...|++++|...|+++++.. +-+...|..+..+|...|+ .+.+...+..... ..|..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 74 4478899999999999999999999999999974 4567888888888876654 3445555555542 23333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHH
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 773 (790)
..+..+..++...|++++|+..+++..+ +.|+......|
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3455566677788999999999999985 47775444444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-06 Score=83.42 Aligned_cols=169 Identities=9% Similarity=-0.044 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----CHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-----DIATYN 665 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~ 665 (790)
..+..+..++...|++++|++++...+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHH
Confidence 3344667777778888888888887766552 135666777778888888888888888888775 45 244444
Q ss_pred HHHHHH--HhcC--CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC----CCCh
Q 003872 666 VVIQGL--GKMG--RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-----GI----NPDV 732 (790)
Q Consensus 666 ~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~----~p~~ 732 (790)
.|..++ ...| +++.|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+. +- +-+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 555442 2223 7888888888876543 55333344444777888888888888866542 00 2245
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++..+|......|+ +|.++++++.+. .|++.-
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 566566656666676 788888888754 566654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-07 Score=88.34 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL-VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-----NEFT 308 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~ 308 (790)
+..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 333344555555555666666666655544432 113444455555566666666666666655543 33 1333
Q ss_pred HHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 309 HRIIIQG--CCKSY--RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 309 ~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
...+..+ ....| +.++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334333 12222 555566666665443 2332222333335555566666655555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=91.28 Aligned_cols=175 Identities=9% Similarity=-0.130 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CC----
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQED----DVVV-DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTS-LS---- 153 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 153 (790)
...|.....++...|++++|...+...... +.++ ...+|..+...|.+.|++++|+..|++....... .+
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345677777888999999999999887663 2221 2568899999999999999999999988775211 11
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 154 PNVYDSVLVSLVRK-KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 154 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
..++..+...|... |++++|+..|++.++....... ......+++.+...+.+.|++++|+..|+...+...-
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 35788999999996 9999999999998875321100 0000234566666777777777777777776652111
Q ss_pred CCch-----hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 233 EFDI-----YGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 233 ~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
.+.. ..|..+..++...|++++|...|++..+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1111 1345555666666777777766666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-07 Score=87.44 Aligned_cols=187 Identities=5% Similarity=-0.037 Sum_probs=128.0
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CCHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD---SETFKLLLEPCIKSGKIDFAIEILDYMEELGTS--LSPNV 156 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 156 (790)
.++..+-.....+.+.|++++|...|+.+...... + ..++..+..+|.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45667777888899999999999999999987532 3 678889999999999999999999999997531 23457
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 157 YDSVLVSLVR--------KKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 157 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
+..+..++.. .|++++|...|+++++.. +.+......+... ..+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------------p~~~~~~~a~~~~--------------~~~~~ 145 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY------------PNHELVDDATQKI--------------RELRA 145 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC------------TTCTTHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC------------cCchhHHHHHHHH--------------HHHHH
Confidence 8888888988 999999999999999863 2222222221111 01100
Q ss_pred cCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 003872 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP--DLHTYNSLIQVLCVV----------GKVKDALIVWEE 296 (790)
Q Consensus 229 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~ 296 (790)
. -...+..+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|++
T Consensus 146 ~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 146 K-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 0 01124455666677777777777777776652211 123455555666544 667777777777
Q ss_pred HHhC
Q 003872 297 LKGS 300 (790)
Q Consensus 297 ~~~~ 300 (790)
+.+.
T Consensus 221 ~~~~ 224 (261)
T 3qky_A 221 LLQI 224 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.3e-07 Score=83.80 Aligned_cols=175 Identities=11% Similarity=0.001 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--HHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-P-VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI--ATYN 665 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 665 (790)
++..+..+...+...|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667788899999999999999999876311 1 1356778889999999999999999999986432211 2343
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCCCHHH---------------HHHHHHHHHhcCC
Q 003872 666 VVIQGLGK------------------MGRADLASTILDKLMKQGGGYLDVVM---------------YNTLINVLGKAGR 712 (790)
Q Consensus 666 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~li~~~~~~g~ 712 (790)
.+..++.. .|++++|...|+++++..+-.+.... ...+...|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44444433 67899999999999987422222211 0245567889999
Q ss_pred HHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 713 FDEANMLFEQMRTSGINPD----VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
+++|...|+++.+. .|+ ...+..+..++.+.|++++|++.++.+... .|+.+
T Consensus 163 ~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSCCC
T ss_pred HHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCch
Confidence 99999999999985 343 256888999999999999999999999876 45443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=85.65 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=127.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LG 672 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~ 672 (790)
+......+...|++++|...|+...+.. +.+...+..+...+...|++++|+..++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4567778899999999999999987664 5567889999999999999999999999988764 355444332222 22
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHH
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 751 (790)
..+....|...++++++.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2233345789999998874 4468889999999999999999999999999853322 356888999999999999999
Q ss_pred HHHHHHHHh
Q 003872 752 HYFLKMMLD 760 (790)
Q Consensus 752 ~~~~~~m~~ 760 (790)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-07 Score=83.72 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKL----------------LLEPCIKSGKIDFAIEILDYMEELGTSL 152 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~ 152 (790)
.....+...|++++|...|+...+.++. +...+.. +...|.+.|++++|+..|++..+.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3444555667777777777766665321 3344444 5666666666666666666666654 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc--hHHHHHHHHHHHhcC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR--RSEFKQVFERLKEQK 230 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~ 230 (790)
+...+..+..++...|++++|...|+++++. .+.+...+..+...|...|. ...+...+.....
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-- 152 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQL------------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-- 152 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--
Confidence 5556666666666666666666666666654 33344555555555443332 2223333333221
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
..|....+.....++...|++++|...|++..+.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1122222222333344445555555555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=83.58 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH-
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS- 163 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 163 (790)
..+......+.+.|++++|...++...+.. +-+...+..+...+...|++++|+..|+++..... ++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345556677778888888888888777654 33667778888888888888888888887766542 44433322211
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICI 243 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 243 (790)
+...+....|...+++.++. .+.+...+..+...+...|++++|...|+.+.+...-..+...+..+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA------------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 12222333456666666654 233455555566666666666666666666554211111234555555
Q ss_pred HHHhccCChHHHHHHHHHHH
Q 003872 244 HAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~m~ 263 (790)
..+...|+.++|...|++..
T Consensus 152 ~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 152 DILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHH
Confidence 66666666666666555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-06 Score=79.45 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH--HHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVV-V-DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSP--NVYDSV 160 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 160 (790)
..+..+...+.+.|++++|+..|+.+...... + ....+..+..+|.+.|++++|+..|+++.+..+.... .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 33444445555556666666666655553211 1 1244555555555666666666666665554321110 122233
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
..++...+.. .+. .+..+...+...|++++|...|+.+.+.. |-+...+.
T Consensus 85 g~~~~~~~~~-----~~~-----------------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~ 134 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-----------------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTD 134 (225)
T ss_dssp HHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHH
T ss_pred HHHHHhhhhh-----hhh-----------------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHH
Confidence 3333222210 000 11112223344678888888888887632 22222222
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHH
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-E---FTHRIIIQGC 316 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~---~~~~~li~~~ 316 (790)
...... .+...+. .....+...|.+.|++++|...|+++.+. .|+ . ..+..+..+|
T Consensus 135 a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 135 ATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHH
Confidence 211100 0001110 11134566778888899999888888765 233 2 4577778888
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 003872 317 CKSYRMDDAMKIFSEMQYNG 336 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~ 336 (790)
.+.|+.++|.+.++.+...+
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHHHHhhC
Confidence 88899999998888887764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=82.22 Aligned_cols=144 Identities=9% Similarity=-0.062 Sum_probs=89.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA 677 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 677 (790)
...+...|++++|+..+....... +.+...+-.+...|.+.|++++|+..|++.++.. +-+...|..+...|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344445566777777776665442 2234455566677777777777777777777653 33566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCC-ChHHHHHHHHHHhccCC
Q 003872 678 DLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANML-FEQMRTSGINP-DVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 747 (790)
++|...|+++++.. +-+...|..+..+|.+.|++++|.+. +++..+. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 77777777777653 33566677777777777776655543 4666653 33 34555555555555553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-07 Score=89.08 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccc
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVE 195 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (790)
+.+...+..+...+.+.|++++|+..|++..+..+ .+...+..+...+.+.|++++|...++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------------ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------------ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------------
Confidence 33556777888888899999999999999888753 46778888999999999999999999887553
Q ss_pred cCCCcch-HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhH
Q 003872 196 SLPGCVA-CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP-DLHT 273 (790)
Q Consensus 196 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 273 (790)
.|+... .......+...++.++|...+++.... -+.+...+..+...+...|++++|...|+++.+..... +...
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 233322 222333466778888888888888763 34467788889999999999999999999998874321 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
+..+...+...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8888899999999988888887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.3e-07 Score=87.33 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=136.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|...|+...+.. +-+...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3466677788899999999999999999998775 5577888899999999999999999999988763 454433332
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHhcc
Q 003872 668 -IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN-PDVVTFNTLIEVNGKA 745 (790)
Q Consensus 668 -i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~ 745 (790)
...+...++.+.|...+++..... +.+...+..+..++...|++++|...|.++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233667788888999999999874 557888999999999999999999999999985322 1266889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998888765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=86.30 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-C---
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVHPV--NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-D--- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~--- 660 (790)
...++.+...|...|++++|+..|++..+. | .+. ..++..+...|.. |++++|+..|++..+..... +
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 456788889999999999999999876543 2 122 3567788888988 99999999999887642111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV--- 732 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 732 (790)
..+++.+...|...|++++|+..|+++++...-.++ ...+..+..++...|++++|...|++.. . .|+.
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~ 230 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCC
Confidence 457888899999999999999999998875311112 2366677777888899999999999987 3 3431
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHH
Q 003872 733 ---VTFNTLIEVNGKAGRLKEAHYF 754 (790)
Q Consensus 733 ---~~~~~l~~~~~~~g~~~~A~~~ 754 (790)
.....++.++ ..|+.+.+.++
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 2344555555 56787666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-07 Score=99.00 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=128.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...|...|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l 507 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLAL 507 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3355677888899999999999999999998775 5577889999999999999999999999999874 3367888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 746 (790)
..+|.+.|++++ .+.|+++++.. +-+...|..+..++.+.|++++|...|+++.+. .|+ ...|..+..++...|
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 999999999999 99999999874 457788999999999999999999999998864 565 567778888887766
Q ss_pred C
Q 003872 747 R 747 (790)
Q Consensus 747 ~ 747 (790)
+
T Consensus 583 ~ 583 (681)
T 2pzi_A 583 S 583 (681)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-07 Score=99.48 Aligned_cols=170 Identities=10% Similarity=-0.080 Sum_probs=92.8
Q ss_pred HhcCChHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc
Q 003872 130 IKSGKIDFAIEILDYME--------ELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV 201 (790)
Q Consensus 130 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (790)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|+..|+++++. .+.+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------~p~~~~ 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER------------VGWRWR 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HCCCHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CcchHH
Confidence 44566666666666555 221 234455555566666666666666666666554 233445
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.|..+...+...|++++|++.|++..+. -+-+...|..+..++.+.|++++ .+.|++..+.... +...|..+..++
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~ 544 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARAR 544 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHH
Confidence 5555556666666666666666665542 12234555566666666666666 6666666554322 445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN-EFTHRIIIQGCCK 318 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 318 (790)
.+.|++++|.+.|++..+. .|+ ...+..+..++..
T Consensus 545 ~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHc
Confidence 6666666666666665544 232 3444444444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=96.07 Aligned_cols=150 Identities=8% Similarity=-0.078 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444444332 2233444444444555555555555555544432 223444444444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---CCHHHHHHHHHHHH
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA---GRLKEAHYFLKMML 759 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~ 759 (790)
+++.+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5544442 2234444444445555555555555555444421 11234444444444444 55555555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-06 Score=76.10 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=97.3
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY----RMDDAMKIFS 330 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 330 (790)
|++.|++..+.| ++..+..+...|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555542 45555555555555666666666666655543 34444445555544 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003872 331 EMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVR-TSCWTHNILIDGLFR----NGRAEAAYTLFCD 401 (790)
Q Consensus 331 ~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 401 (790)
+..+.| +...+..|...|.. .++.++|...|+...+.|.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 56666666666666655411 014555566666665 5566666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHhCCC
Q 003872 402 LKKKGKFVDGITFSIVVLQLCRE-G-----QIEEALRLVEEMEGRGF 442 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 442 (790)
..+.+ .+...+..|...|... | ++++|..+|+...+.|.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66551 1333444555555432 2 66666666666666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-06 Score=77.04 Aligned_cols=162 Identities=12% Similarity=-0.022 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG----YFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
++..+..+...|...+++++|...|+...+.| ++..+..|...|.. + ++++|+..|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67888899999999999999999999998876 56777778888887 6 8999999999998864 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHH
Q 003872 666 VVIQGLGK----MGRADLASTILDKLMKQGGGYLD---VVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVT 734 (790)
Q Consensus 666 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 734 (790)
.|...|.. .+++++|..+|++..+.+ +. ...+..|...|.. .+++++|..+|++..+. ..+...
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a 164 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYA 164 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHH
Confidence 88888877 889999999999998765 32 7788888888888 78999999999999885 235556
Q ss_pred HHHHHHHHhcc-C-----CHHHHHHHHHHHHhCCC
Q 003872 735 FNTLIEVNGKA-G-----RLKEAHYFLKMMLDSGC 763 (790)
Q Consensus 735 ~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 763 (790)
+..|...|... | ++++|++++++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77788877653 3 89999999999988774
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-05 Score=73.75 Aligned_cols=170 Identities=8% Similarity=-0.062 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHH--
Q 003872 135 IDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK--QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVAL-- 210 (790)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-- 210 (790)
.++|+++++.+...++ -...+|+.--..+...+ ++++++..++.++.. .+.+..+|+.-...+
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------------nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------------NEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------------CTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------------CcccHHHHHHHHHHHHH
Confidence 3466666666666542 24445666666666666 677777777777664 344445555433333
Q ss_pred --Hhc---cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 003872 211 --RKS---DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLH--TSLRLFKEMKEKGLVPDLHTYNSLIQVLCV 283 (790)
Q Consensus 211 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 283 (790)
... +++++++.+++.+.+. -+-+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+..
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 223 4566666666666652 2334555555555555555555 666666666655433 45555544444444
Q ss_pred cCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 284 VGK------VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 284 ~~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
.+. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 443 444444444444332 3344444444444444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-05 Score=74.68 Aligned_cols=227 Identities=6% Similarity=-0.027 Sum_probs=176.5
Q ss_pred HHHHHhcCCc-chHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHH---
Q 003872 91 FRTVCRAGFL-EEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KIDFAIEILDYMEELGTSLSPNVYDSVLVSL--- 164 (790)
Q Consensus 91 ~~~~~~~~~~-~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 164 (790)
+++..+.|.+ ++|+.+.+.++..++. ...+|+.--..+...+ ++++++++++.+...++ -+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHH
Confidence 3344455555 5899999999987643 6777888888888888 99999999999998764 3556666666555
Q ss_pred -Hhc---CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH--HHHHHHHHHHhcCCCCCchhh
Q 003872 165 -VRK---KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS--EFKQVFERLKEQKEFEFDIYG 238 (790)
Q Consensus 165 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~ 238 (790)
... +++++++..++++++. .+.+..+|+.-.-.+.+.|.++ ++++.++.+.+. -+-|...
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sA 182 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSA 182 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHH
Confidence 555 7899999999999987 6778899999888888889888 999999999974 2346777
Q ss_pred HHHHHHHHhccCC------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCCCHHHH
Q 003872 239 YNICIHAFGCWGD------LHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKV-KDALIVWEELKGSG--HEPNEFTH 309 (790)
Q Consensus 239 ~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g--~~~~~~~~ 309 (790)
|+.-...+...+. ++++++.++++....+. |...|+.+...+.+.|+. +.+..+..++.+.+ -+.+...+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 8777777777676 89999999999887654 888898888888888874 44555666655432 14567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 310 RIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
..+..+|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888888888999999999998876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-06 Score=76.61 Aligned_cols=130 Identities=11% Similarity=-0.038 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+...|++++|...|+... .|+...|..+...|...|++++|+..+++..+.. +.+...+..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567788889999999999998774 5688899999999999999999999999998864 45778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 672 GKMGRADLASTILDKLMKQGGGYL--------------DVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...|++++|.+.|+++.+..+..+ ....+..+..+|...|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999988641111 2367888888999999999999999999874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.1e-06 Score=80.26 Aligned_cols=169 Identities=8% Similarity=-0.082 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN-----YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC---PTD-- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~-- 660 (790)
...+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556788889999999999999888765422111 2234455667888999999999999876421 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLM---KQGGGYL--DVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD 731 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 731 (790)
..+++.+...|...|++++|...++++. +..+..+ ...++..+..+|...|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4588899999999999999999999988 3321111 1258888999999999999999999988752 11111
Q ss_pred -hHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 003872 732 -VVTFNTLIEVNGKAGRLKEA-HYFLKMML 759 (790)
Q Consensus 732 -~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 759 (790)
..+|..+..+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788999999999999999 77788765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.4e-06 Score=76.83 Aligned_cols=132 Identities=8% Similarity=-0.055 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.+..+...+...|++++|+..|++.. .|+...+..+...|...|++++|...++++++.. +.+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 34556778889999999999999874 5688899999999999999999999999999874 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC--------------CC-ChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 708 GKAGRFDEANMLFEQMRTSGI--------------NP-DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~~g~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
...|++++|...|++..+... .| ....+..+..++.+.|++++|.+.+++..+. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 999999999999999997421 11 1378889999999999999999999999865 4543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.1e-06 Score=90.93 Aligned_cols=83 Identities=8% Similarity=-0.077 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHH
Q 003872 390 GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666554222 4455666666666666666666666666654322 4555666666666666666666666
Q ss_pred HHHHh
Q 003872 470 KHIRD 474 (790)
Q Consensus 470 ~~~~~ 474 (790)
++..+
T Consensus 81 ~~al~ 85 (568)
T 2vsy_A 81 QQASD 85 (568)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.5e-06 Score=74.15 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555666666666665555443 2344455555555555555555555555555442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 003872 672 GKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~ 690 (790)
...|++++|...++++.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=76.41 Aligned_cols=142 Identities=8% Similarity=-0.117 Sum_probs=84.3
Q ss_pred HHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 208 VALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
..+...|++++|+..+..... ..| +...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..+|...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556667777777666543 222 2445556677777777777777777777665322 56667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI-FSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
+++|...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777777766653 34466666666777777776554443 45555432 123444554444444444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.7e-06 Score=69.35 Aligned_cols=99 Identities=12% Similarity=0.000 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 34445555555555555555555555555443 3344555555555555555555555555555442 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 003872 670 GLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+|...|++++|.+.|+++++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 555555555555555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-05 Score=71.83 Aligned_cols=130 Identities=11% Similarity=-0.055 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 3556778888999999999999999998863 4478889999999999999999999999999874 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHH--HHHHHHhccCCHHHHHHHHHHHH
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFN--TLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
++...|++++|...|+++.+.. +.+...+. .++..+.+.|++++|++.+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999998852 22444553 34444778899999999998765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-06 Score=81.40 Aligned_cols=173 Identities=8% Similarity=-0.004 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---C--C
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVH-PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP---T--D 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~--~ 660 (790)
...|...+..|...|++++|...|....+. +-. .-..+|+.+...|...|++++|+..|++..+.... + -
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 446777788899999999999999877543 211 11357888889999999999999999987654111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD- 731 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 731 (790)
..+++.+...|.. |++++|+..+++.++......+ ..+++.+..+|...|++++|...|++.... +..+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 3567788888988 9999999999998765311111 467888999999999999999999998862 22122
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 732 VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 732 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
...+..++.++...|++++|+..+++.. ..|+.
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~ 227 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCC
Confidence 2366777788888899999999999998 35544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.9e-06 Score=70.73 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 344444444444455555555555554444443 2334444444444444444444444444444432 12333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~ 689 (790)
.+|...|++++|...|+++++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=77.80 Aligned_cols=167 Identities=11% Similarity=-0.051 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPVN----YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IAT 663 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~ 663 (790)
+...+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..++++.+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44457788999999999999999876431 2221 13334666777888999999999999874222 22 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC-hH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQG----GGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPD-VV 733 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ 733 (790)
++.+...|...|++++|...++++.+.. +..+. ..+|..+..+|.+.|++++|...+++..+ .+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999999988521 11122 34778899999999999999999998875 222222 67
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHh
Q 003872 734 TFNTLIEVNGKAGR-LKEAHYFLKMMLD 760 (790)
Q Consensus 734 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 760 (790)
+|..+..++.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 6999999998763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-05 Score=66.65 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+..++..+..+|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 33444444444444444444444444431 2234444444455555555555555555554442 23444445555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003872 708 GKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~ 725 (790)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=71.99 Aligned_cols=96 Identities=11% Similarity=-0.102 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|+++++.. +-+...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 344455555566666666666666665542 2345555555566666666666666666665553 2234455555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003872 707 LGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~ 725 (790)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=66.44 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4445555555555555555555555554433 2344455555555555555555555555555432 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 003872 671 LGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~ 690 (790)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=66.72 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 34445555666666666666666655542 2345555555666666666666666666655542 33455555555566
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003872 708 GKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~ 725 (790)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666665555
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-05 Score=67.67 Aligned_cols=101 Identities=19% Similarity=0.052 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3455566666666666666666666666665543 3345555555556666666666666666655542 2244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
...|...|++++|.+.++++.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555566666666666555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.1e-06 Score=73.50 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV-LGKAGRF--DE 715 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 715 (790)
.|++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 444555555555544432 2344455555555555555555555555555542 2244444455555 4455555 55
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 716 ANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
|...++++.+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555555431 112444555555555556666666666555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-06 Score=77.08 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=116.0
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCHHHHHHHHHHHHhcCC
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCP-TDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 676 (790)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3568999999966555432 2345678888899999999999999999988762 111 234567788889999999
Q ss_pred HHHHHHHHHHHHHh---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHhccC
Q 003872 677 ADLASTILDKLMKQ---GGGYL--DVVMYNTLINVLGKAGRFDEANMLFEQMRTS---GINPD--VVTFNTLIEVNGKAG 746 (790)
Q Consensus 677 ~~~A~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~--~~~~~~l~~~~~~~g 746 (790)
+++|...+++..+. .+..+ ....+..+..++...|++++|...+++.... .-.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999988765 21111 2346778888899999999999999988742 11111 334678889999999
Q ss_pred CHHHHHHHHHHHHh
Q 003872 747 RLKEAHYFLKMMLD 760 (790)
Q Consensus 747 ~~~~A~~~~~~m~~ 760 (790)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=67.50 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44455555566666666666666666555443 2344555555555555555555555555555442 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
.|...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 5555555555555555555542 223444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-06 Score=71.73 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445556666677777777777777776653 3466666667777777777777777777776642 224566666777
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 003872 741 VNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~ 760 (790)
+|...|++++|++.+++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=77.41 Aligned_cols=172 Identities=8% Similarity=-0.034 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCC--
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDS------ETFKLLLEPCIKSGKIDFAIEILDYMEELGT---SLS-- 153 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 153 (790)
..+...+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|++.|++...... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44556677888999999999999988776432 22 2244466667788999999999999886422 112
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc---C
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---K 230 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 230 (790)
..+++.+...|...|++++|...++++++.......+ ......+++.+...|...|++++|...++...+. .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-----~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-----EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-----ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999988542111000 0001246666777777777777777777766541 1
Q ss_pred CCCC-chhhHHHHHHHHhccCChHHH-HHHHHHH
Q 003872 231 EFEF-DIYGYNICIHAFGCWGDLHTS-LRLFKEM 262 (790)
Q Consensus 231 ~~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m 262 (790)
+... -..+|..+...|.+.|+.++| ...+++.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111 144556666666666666666 5545544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-05 Score=66.98 Aligned_cols=119 Identities=12% Similarity=0.028 Sum_probs=81.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
+.+...|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence 4455667777777778888888888888777652 3356677777777777888888888888777763 345667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 703 LINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
+..++...|++++|.+.|++..+. .| +...+..+..++.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777778888888887777764 23 3445555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.2e-05 Score=73.30 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=89.7
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CC----HhHHHHH
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDI----YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-PD----LHTYNSL 277 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 277 (790)
+..+...|++++|...++...+.....|+. ..+..+...+...|++++|...|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666677766666666533223332 12334555666667777777777777763222 12 2256777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 003872 278 IQVLCVVGKVKDALIVWEELKG----S-GHEPN-EFTHRIIIQGCCKSYRMDDAMKIFSEMQYN----GLIPD-TVVYNS 346 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~----~-g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 346 (790)
..+|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777652 1 11111 224556666666666776666666655421 11111 344555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 003872 347 LLNGMFKSRK-VMEACQLFEKMV 368 (790)
Q Consensus 347 li~~~~~~~~-~~~a~~l~~~~~ 368 (790)
+...+.+.|+ .++|...+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555553 455555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.6e-06 Score=74.09 Aligned_cols=121 Identities=5% Similarity=0.009 Sum_probs=100.5
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRA--D 678 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 678 (790)
...|++++|...++...+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34678889999998887765 5677889999999999999999999999998874 3467788888888 7889998 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
+|...++++++.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999874 446788888999999999999999999999884
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-05 Score=66.37 Aligned_cols=119 Identities=12% Similarity=-0.005 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 34555666666777777777777777776652 3356666667777777777777777777776653 33466666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.++...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777766642 1245555566666655554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00044 Score=68.17 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-ChhHHH
Q 003872 98 GFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK-K-QLGLAM 174 (790)
Q Consensus 98 ~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~ 174 (790)
+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+....+ -+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3335677777766666532 5555666555555566 36666666666666542 3555565555555554 4 555555
Q ss_pred HHHHHHHH
Q 003872 175 SILFKLLE 182 (790)
Q Consensus 175 ~~~~~~~~ 182 (790)
..++++++
T Consensus 146 ~~~~k~L~ 153 (349)
T 3q7a_A 146 EYIHGSLL 153 (349)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00044 Score=68.18 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=117.2
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG-DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV-G- 285 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~- 285 (790)
...+.+..++|+++++.+... -+-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-..++... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334445556788888888763 2224556676666666667 588888888888877544 666777666666665 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMD--------DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK- 356 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~- 356 (790)
++++++++++.+.+.. +.+...|+.-.-.+.+.+.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 7788888888888764 556777766555555555554 777888887766433 67777777766666665
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003872 357 ------VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGR 391 (790)
Q Consensus 357 ------~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~ 391 (790)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777776654 3366667666555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=68.71 Aligned_cols=102 Identities=10% Similarity=-0.085 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3455556666666666677777776666665554 3455666666666666666666666666666542 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+|...|++++|...|+++++..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-05 Score=69.24 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34445555555666666666666666655542 2245555555555666666666666666655542 23455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003872 705 NVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+|...|++++|...|++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-05 Score=63.75 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTL 738 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 738 (790)
.+...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|...+++..+.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 355666667777777777777777777777663 3456677777777777777777777777777642 2246667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 003872 739 IEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 739 ~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..++...|++++|+..+++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-05 Score=78.34 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--------------IATYNVVIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444444445555555555555555544321111 3556666666666677777777776666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEA-HYFLKMML 759 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 759 (790)
+.+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.|+.++| ..++++|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666677777777776666531 12355566666666666666666 33444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-05 Score=78.23 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV--------------NYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
.+...+..+...|.+.|++++|...|+...+...... ...|..+..+|.+.|++++|+..+++.++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999999987742211 47889999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 003872 655 KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA-NMLFEQMRT 725 (790)
Q Consensus 655 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 725 (790)
.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 4478899999999999999999999999999874 45678888999999999999988 556777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=72.66 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC--
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTD-- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~-- 660 (790)
...++..+...+...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+. ....+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4567788899999999999999999887652 21 223456788888999999999999999987654 11112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 661 --IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 661 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
...+..+...+...|++++|...+++.........+ ..++..+..++...|++++|.+.+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345778888999999999999999998754211122 23467788889999999999999998875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=78.55 Aligned_cols=100 Identities=9% Similarity=-0.084 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...+..+...+.+.|++++|...++....... -+...+..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666777778888888888888888777642 367777788888888888888888888877754 345677778888
Q ss_pred HHHhcCChhHHHHHHHHHHHHh
Q 003872 163 SLVRKKQLGLAMSILFKLLEAC 184 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~ 184 (790)
++...|++++|...|.++++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888777653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-05 Score=66.93 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3455556666677777777777777777776654 4456666677777777777777777777776653 3355566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+|...|++++|...|+++++..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777766653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-05 Score=65.65 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVN 742 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 742 (790)
.+..+...+.+.|++++|...|++++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34444555666666666666666666653 3355566666666666677777777766666542 22345566666666
Q ss_pred hccCCHHHHHHHHHHHHh
Q 003872 743 GKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~ 760 (790)
...|++++|++.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 677777777777766654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.2e-05 Score=72.77 Aligned_cols=126 Identities=11% Similarity=-0.066 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGK 709 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 709 (790)
+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHH
Confidence 3444555666666666666555432 332244444445556666666666665332210 110 1234445555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 710 AGRFDEANMLFEQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666553222132 234445555666666666666666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.2e-05 Score=67.71 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4467788899999999999999999999998875 5578889999999999999999999999999874 4468899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDV 697 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 697 (790)
..+|...|++++|...|+++++..+-.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999999876344443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-05 Score=72.45 Aligned_cols=200 Identities=6% Similarity=-0.109 Sum_probs=124.2
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcc-cc-------
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSV-------LVSLVRKKQLGLAMSILFKLLEACNDNTADNSV-VE------- 195 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~------- 195 (790)
..++...|.+.|.++....+ -..+.|..+ ...+.+.++..++...+.+.+............ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 57999999999999999863 366778777 566666666666666666555422111100000 00
Q ss_pred -cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC--Hh
Q 003872 196 -SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPD--LH 272 (790)
Q Consensus 196 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ 272 (790)
...-....-.+...+...|++++|.++|+.+.. ..|+....-.+...+.+.+++++|+..|+...... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 000012334466677788888888888877764 22333355555567777888888888887554321 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 273 TYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566667777788888888888887764432143 234555666677778888888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-06 Score=76.92 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=94.2
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---------------HHHHHH
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD---------------IATYNV 666 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ 666 (790)
...|+++++.+.++.-.+.. ......+..+...+...|++++|+..|++..+...... ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33445555544443222110 12334566667777788888888888888776422111 267777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAG 746 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 746 (790)
+..+|...|++++|...++++++.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 7888888888888888888888873 4567778888888888888888888888887742 224566777777777777
Q ss_pred CHHHHH-HHHHHHHh
Q 003872 747 RLKEAH-YFLKMMLD 760 (790)
Q Consensus 747 ~~~~A~-~~~~~m~~ 760 (790)
+.+++. ..+..|..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 666665 44555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.3e-05 Score=63.69 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----hHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI--NPD----VVTF 735 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 735 (790)
..+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++++..... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345556666667777777777777766653 34566666667777777777777777777665311 112 5566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..+..++.+.|++++|.+.+++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67777777777777777777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.8e-05 Score=62.76 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3334444444455555555555444432 2234444455555555555555555555555442 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRT 725 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~ 725 (790)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-05 Score=75.90 Aligned_cols=100 Identities=13% Similarity=-0.040 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788899999999999999999998774 4578889999999999999999999999999873 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC
Q 003872 670 GLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
+|...|++++|...|+++.+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.4e-05 Score=62.99 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 687 (790)
...+.+.|++++|+..|++.++.. +.+...|+.+..+|...|++++|++.+++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 333333344444444444333321 122333333334444444444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=65.47 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----hHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--INPD----VVT 734 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~ 734 (790)
...+.-+...|.+.|++++|++.|+++++.. +-+...|+.+..+|...|++++|+..+++..+.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456778889999999999999999999874 4578889999999999999999999999988631 1222 246
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
|..+..++...|++++|++.+++.++. .||+.+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 778889999999999999999998864 455433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0011 Score=64.99 Aligned_cols=172 Identities=6% Similarity=-0.035 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKG--KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY-FNQAWGVLNEMGEKFCPTDIATY 664 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~ 664 (790)
|.+..+|+.-.-.+.+.+ .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.++++++..+ -|...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 446777777777777777 4899999999998876 6688888888888888888 5899999999998754 478888
Q ss_pred HHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 003872 665 NVVIQGLGKM--------------GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA-----------GRFDEANML 719 (790)
Q Consensus 665 ~~li~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~ 719 (790)
+.....+.+. +.++++++.+++++... +-|...|+-+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 8776666554 45889999999999874 55777887665555555 457899999
Q ss_pred HHHHHhcCCCCChHHHHHHHH-----HHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 720 FEQMRTSGINPDVVTFNTLIE-----VNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 720 ~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++++.+. .|+. .|..+.. +....|..+++..++.++.+. .|-..
T Consensus 261 ~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~ 309 (331)
T 3dss_A 261 CKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 309 (331)
T ss_dssp HHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence 9999984 5664 3433222 223467788899999998843 55443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00015 Score=59.39 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA 745 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 745 (790)
.+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33334444444444444444444331 2233334444444444444444444444444321 11233344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-05 Score=62.41 Aligned_cols=96 Identities=13% Similarity=-0.050 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEV 741 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 741 (790)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345555566666677777777776666653 3355666666666666677777777776666532 1235566666666
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 003872 742 NGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~ 760 (790)
+...|++++|++.+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6667777777776666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=59.46 Aligned_cols=96 Identities=17% Similarity=0.033 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 334445555555555555555555555442 2245555555555666666666666666655542 2345555555666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003872 707 LGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~ 725 (790)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.2e-05 Score=61.65 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP--DVVTFNTLI 739 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~ 739 (790)
..+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...+++..+.. +. +...|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344455555666666666666666666553 3345566666666666666777776666666531 11 355666666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhC
Q 003872 740 EVNGKA-GRLKEAHYFLKMMLDS 761 (790)
Q Consensus 740 ~~~~~~-g~~~~A~~~~~~m~~~ 761 (790)
.++.+. |++++|++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 667777 7777777777766644
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00017 Score=61.33 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
.+...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...++++++.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 345556666666666666666666666666552 2345666666666667777777777777766653 3355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 003872 704 INVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~ 725 (790)
..+|...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777777777776664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.6e-05 Score=60.63 Aligned_cols=99 Identities=10% Similarity=0.032 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL--DVVMYNT 702 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~ 702 (790)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +. +...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 44556666677777777777777777777653 3356667777777777788888888887777653 23 5667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc
Q 003872 703 LINVLGKA-GRFDEANMLFEQMRTS 726 (790)
Q Consensus 703 li~~~~~~-g~~~~A~~~~~~m~~~ 726 (790)
+..++... |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77777778 8888888888777764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=67.48 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN----------------YTYNSMMSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 653 (790)
....+..+...+...|++++|...|+...+.. +.+. ..|..+..+|...|++++|+..+++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567778889999999999999999998753 2222 678888899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 003872 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN-MLFEQMRT 725 (790)
Q Consensus 654 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 725 (790)
+.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+..+..++...|+.+++. ..|..|..
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 873 4578889999999999999999999999999874 446777888887877777777666 55555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-05 Score=63.48 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC----HHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC--PTD----IATYNV 666 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 666 (790)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555554443 23444444455555555555555555555444311 111 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|...|++++|.+.|+++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444555555555544444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00039 Score=59.80 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
..+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 33444444444444444444444444443 222 3344444445555555555555555555442 223444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 003872 703 LINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+..+|...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.3e-05 Score=66.60 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DVV 733 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 733 (790)
++..+...|...|++++|...+++..+......+ ...+..+..++...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555554432100011 334555555666666666666666665531 1111 134
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55666667777777777777777665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00036 Score=60.07 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIAT 663 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 663 (790)
+.+...+..+...+...|++++|...|+...+.. |+ ...|..+...|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4567788899999999999999999999998764 55 6788888999999999999999999998863 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
+..+..+|...|++++|...|++..+.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 8899999999999999999999999874 3345555444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00044 Score=72.56 Aligned_cols=129 Identities=7% Similarity=-0.068 Sum_probs=89.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CC-CHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTD----MGVHP-VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC----PT-DIATYNV 666 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~-~~~~~~~ 666 (790)
+...+...|+.+.|..++..... .+..+ -..++..|...|...|++++|..++++....-. .+ ...++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444456788888888776643 22222 245677888899999999999999988764311 11 2447788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++..|...|++++|..++++........++ ...+..+...+...|++++|...|.+..+
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888999999999999999887654211111 24566666777788999999888877754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0059 Score=59.87 Aligned_cols=135 Identities=11% Similarity=0.011 Sum_probs=74.0
Q ss_pred HhcCCcc-hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 95 CRAGFLE-EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGK----------IDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 95 ~~~~~~~-~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
.+.|.++ +|+.+.+.+...++. +..+|+.--..+...+. +++++.+++.+....+ -+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455555 577777777766532 44455443333333322 4566666666666542 355666666666
Q ss_pred HHhcCC--hhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc-hHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 164 LVRKKQ--LGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR-RSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 164 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+.+. +++++..++++++. .+.|..+|+.-.-.+...|. ++++++.+..+.+. -+-|..+|+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~ 183 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 183 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 666653 56666666666665 45555666655555555555 35556665555542 122444444
Q ss_pred HHHHH
Q 003872 241 ICIHA 245 (790)
Q Consensus 241 ~li~~ 245 (790)
.....
T Consensus 184 ~R~~l 188 (331)
T 3dss_A 184 YRSCL 188 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00013 Score=64.11 Aligned_cols=136 Identities=13% Similarity=-0.010 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-PV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...|...|++++|...++...+.... ++ ..++..+...+...|++++|...+++..+.... ++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3557788899999999999999999887654211 11 146778888999999999999999987654111 12
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
..++..+...+...|++++|...+++..+......+ ...+..+..++...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446777888899999999999999998754211112 45677788889999999999999998875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=59.96 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++++.. +-+...+..+..+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344455555666666666666655542 2245555555555666666666666666655542 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRT 725 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~ 725 (790)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55666666666555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00023 Score=62.62 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-c-hhHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-T-DTTLD 774 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t-~~~l~ 774 (790)
...|..+..+|.+.|++++|...+++..... +.+...|..+..+|...|++++|+..+++..+. .|+.. . ...|.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4566777777777888888888888777642 224667777778888888888888888877754 55543 2 23333
Q ss_pred HHHHHHHhhhh
Q 003872 775 FLGREIDRLKD 785 (790)
Q Consensus 775 ~l~~~~~~~~~ 785 (790)
.+.....+.++
T Consensus 140 ~~~~~~~~~~~ 150 (162)
T 3rkv_A 140 IVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 34444444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00024 Score=58.74 Aligned_cols=93 Identities=17% Similarity=0.005 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455555555555555555555443 3344555555555555555555555555555542 22444555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003872 675 GRADLASTILDKLMK 689 (790)
Q Consensus 675 g~~~~A~~~~~~~~~ 689 (790)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.9e-05 Score=62.63 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMG--VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 682 (790)
|++++|+..|++.++.+ -+.+...+..+...|...|++++|+..|++..+.. +.+...+..+..+|...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 12223344445555555555555555555555442 2234444555555555555555555
Q ss_pred HHHHHHHh
Q 003872 683 ILDKLMKQ 690 (790)
Q Consensus 683 ~~~~~~~~ 690 (790)
.+++.+..
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00074 Score=70.80 Aligned_cols=170 Identities=11% Similarity=-0.096 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc---CC-C
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---KE-F 232 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~ 232 (790)
+..+...|...|++++|.+.+.++......... ......+.+.+-..+...|+++++..++...... .+ .
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 455556666666666666666555443210000 0000011112222223345555555555444321 11 1
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHC--CC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK--GL--VP-DLHTYNSLIQVLCVVGKVKDALIVWEELKGS----GHE 303 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~ 303 (790)
..-..++..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... +.+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 112345555666666666666666666655432 11 11 1234555556666666666666666554321 111
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 304 PN--EFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 304 ~~--~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
+. ...+..+...+...+++++|...|.+.
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 123333444444555566555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00074 Score=56.44 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVN---YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQG 670 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~ 670 (790)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+...|++++|...|+++.+... .+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 3444555556666665555555432 1122 2444455555555555555555555554321 12 3344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 003872 671 LGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~ 690 (790)
|...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.6e-05 Score=62.29 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=57.8
Q ss_pred hcCCcchHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHH
Q 003872 96 RAGFLEEVPSLLNSMQEDD--VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLA 173 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (790)
..|++++|+..|+...+.+ -+-+..++..+...|...|++++|+..|++..+..+ .++.++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777753 122456677777777777778888877777777653 3566777777777777777777
Q ss_pred HHHHHHHHHH
Q 003872 174 MSILFKLLEA 183 (790)
Q Consensus 174 ~~~~~~~~~~ 183 (790)
...+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00076 Score=56.37 Aligned_cols=92 Identities=16% Similarity=0.024 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD----VVTFNTLIEVN 742 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~ 742 (790)
...+...|++++|...|+++.+..+..+. ...+..+..++...|++++|...|+++.... |+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 34455556666666666666554311110 0344455555666666666666666665531 22 34455566666
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 003872 743 GKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=76.03 Aligned_cols=132 Identities=12% Similarity=-0.002 Sum_probs=106.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD--------------SETFKLLLEPCIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (790)
....|..+...+.+.|++++|...|+...+...... ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778888899999999999999999988643221 588999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHH-HHHHHH
Q 003872 149 GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQ-VFERLK 227 (790)
Q Consensus 149 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~ 227 (790)
.. .+...|..+..+|...|++++|...|+++++. .+.+...+..+...+.+.++++++.. .+..|.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------------NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 47889999999999999999999999999875 34456778888888888888877653 444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00041 Score=72.98 Aligned_cols=129 Identities=15% Similarity=0.025 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--------------IATYNVVIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3455556666666666666666666665422111 4667777777888888888888888887763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHH-HHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAH-YFLKMML 759 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 759 (790)
+.+...|..+..+|...|++++|...|+++.+. .| +...+..+..++.+.|+.++|. ..+.+|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777788888888888888888887764 33 3556777777777777777665 3444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=75.88 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=95.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA 677 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 677 (790)
...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344667899999999999998875 5568899999999999999999999999999873 44678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 678 DLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFE 721 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 721 (790)
++|.+.++++.+..+-.+........+..+.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875333443333333333888899999999988
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00068 Score=57.89 Aligned_cols=97 Identities=20% Similarity=0.053 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYL-----D-----VVMYNTLINVLGKAGRFDEANMLFEQMRTS-----GI 728 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 728 (790)
+......+.+.|++++|+..|++.++..+..| + ...|+.+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777777766531111 2 237888888888888888888888888863 12
Q ss_pred CCC-hHHH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 729 NPD-VVTF----NTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 729 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.|+ ...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 565 4567 7888899999999999999999874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00087 Score=58.87 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++.... .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 4566677777777888888888888777763 445667777777788888888888888877764 4543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=76.31 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=96.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
+...+.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++|++.++++++.. +.+...|..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 3445678899999999999999873 4468899999999999999999999999999874 456788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH--HhccCCHHHHHHHHH
Q 003872 712 RFDEANMLFEQMRTSGINP-DVVTFNTLIEV--NGKAGRLKEAHYFLK 756 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 756 (790)
++++|.+.|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999885 23 34455556555 888899999999988
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00072 Score=68.66 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+.+.|++++|+..|+..++.- +.. ...... ++..+. -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 345566667777777777777776665410 000 000000 000001 112344566666666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 750 (790)
.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+. .| +...+..+..++...++.++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776666542 234556666666666777777777777766653 23 34555566666666666555
Q ss_pred HHH
Q 003872 751 AHY 753 (790)
Q Consensus 751 A~~ 753 (790)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.002 Score=54.54 Aligned_cols=110 Identities=11% Similarity=-0.079 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----MGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 681 (790)
++++|...|++..+.| .+... |...|...+..++|+..|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5566666666666655 23322 4445555555666666666665543 44555555555555 55666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 003872 682 TILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSG 727 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 727 (790)
++|++..+.+ +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 44445555555555 455666666665555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0021 Score=54.49 Aligned_cols=114 Identities=11% Similarity=-0.132 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFD 714 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 714 (790)
.+++++|+..|++..+.|. ++.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHH
Confidence 3578999999999999873 3333 7777888888999999999999876 77888888888888 78999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC
Q 003872 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 764 (790)
+|.++|++..+.| +...+..|...|.. .+++++|.+++++..+.|..
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999999865 67778888888888 89999999999999988743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0018 Score=69.66 Aligned_cols=171 Identities=9% Similarity=0.003 Sum_probs=135.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY----------FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
...++|++.++.+.+.. +-+...|+.--..+...|+ +++++..++.+.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 35567899999998875 4566778777777777777 899999999999874 34788999888888999
Q ss_pred C--CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc------
Q 003872 675 G--RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG-RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA------ 745 (790)
Q Consensus 675 g--~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------ 745 (790)
| +++++++.++++.+.. +-|...|+.-..++.+.| .++++.+.++++.+..+. |...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 9 7799999999999985 568889998888888889 899999999999886433 677888777776653
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHHHHh
Q 003872 746 --------GRLKEAHYFLKMMLDSGCTPNHVT-DTTLDFLGREIDR 782 (790)
Q Consensus 746 --------g~~~~A~~~~~~m~~~~~~p~~~t-~~~l~~l~~~~~~ 782 (790)
+.++++++++++.... .|+..+ |..+..+....++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 5689999999998864 555444 7777766655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00073 Score=68.64 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-chhHHH
Q 003872 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-TDTTLD 774 (790)
Q Consensus 696 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l~ 774 (790)
+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|++.+++..+. .|+.. .+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56788889999999999999999999999852 225788999999999999999999999999865 55543 344555
Q ss_pred HHHHHHHhhhhhh
Q 003872 775 FLGREIDRLKDQN 787 (790)
Q Consensus 775 ~l~~~~~~~~~~~ 787 (790)
.+.....+.++..
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0004 Score=69.73 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+..+...+.+.|++++|...|+...+. .|+... +...|+..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3445556666666667777777777666544 233221 122233333322221 126777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH-HhccCC
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEV-NGKAGR 747 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~ 747 (790)
+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988874 457788888999999999999999999988763 443 4445555444 233466
Q ss_pred HHHHHHHHHHHHh
Q 003872 748 LKEAHYFLKMMLD 760 (790)
Q Consensus 748 ~~~A~~~~~~m~~ 760 (790)
.+++..++.+|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 7788888888874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0056 Score=52.25 Aligned_cols=63 Identities=21% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLD-VVMY----NTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.|+.+..++.+.|++++|+..+++.++. +.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666677777777777777777777764 112344 3466 6777778888888888888887764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00086 Score=54.73 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|+..|+...+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554443 3345555555566666666666666666655542 22445555555566666666666666665554
Q ss_pred h
Q 003872 690 Q 690 (790)
Q Consensus 690 ~ 690 (790)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00087 Score=70.28 Aligned_cols=127 Identities=9% Similarity=0.047 Sum_probs=92.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCC-HHHHH
Q 003872 635 SFVKKGYFNQAWGVLNEMGEK---FCPT----DIATYNVVIQGLGKMGRADLASTILDKLMKQG-----GGYLD-VVMYN 701 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~ 701 (790)
.+...|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++.. ..-|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778899998888877543 1112 24578888889999999999999988876542 12232 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 702 TLINVLGKAGRFDEANMLFEQMRT-----SGIN-PD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 702 ~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.|...|...|++++|..++++..+ .|-. |+ ..+.+.+..++...|++++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988774 2321 22 445566777788888899999999988753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00022 Score=57.77 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------hH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-------VV 733 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 733 (790)
...+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|...+++..+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4455666666777777777777777776653 345666667777777777777777777777653 343 33
Q ss_pred HHHHHHHHHhccCCHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~ 753 (790)
.+..+..++...|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 34444444444444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00064 Score=68.24 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.. +-+...+..+..+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l 307 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 467788889999999999999999998863 3478889999999999999999999999987653 2234445555444
Q ss_pred -HHhcCCHHHHHHHHHHHHhc
Q 003872 707 -LGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 707 -~~~~g~~~~A~~~~~~m~~~ 726 (790)
....+..+++..+|..|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 23446678888889888753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=69.52 Aligned_cols=130 Identities=9% Similarity=-0.051 Sum_probs=92.7
Q ss_pred HHhcCCcchHHHHHHHhhhC-----CC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCC-HHHHHH
Q 003872 94 VCRAGFLEEVPSLLNSMQED-----DV-VV-DSETFKLLLEPCIKSGKIDFAIEILDYMEEL-----GT-SLS-PNVYDS 159 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 159 (790)
+...|++++|+.+++...+. |. .| ...+++.|..+|...|++++|+.++++.... |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887652 11 11 3467899999999999999999999988753 32 122 245899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC-cchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG-CVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
|...|...|++++|..+++++++......+. ..|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-----~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGP-----SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887754321111 2222 23344555666677777777777777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0033 Score=51.13 Aligned_cols=77 Identities=14% Similarity=-0.021 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 645 AWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 645 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
|+..|++..+.. +.+...+..+...|...|++++|...++++++.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 2234444445555555555555555555554442 2234444444444555555555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.022 Score=61.29 Aligned_cols=156 Identities=7% Similarity=-0.033 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC
Q 003872 590 DIDMVNTFLSIFLAKGK----------LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG--YFNQAWGVLNEMGEKFC 657 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~ 657 (790)
+..+|+.-...+...++ ++++++.++.+.+.. +-+..+|+.-...+.+.+ ++++++..++++.+...
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~ 140 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE 140 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc
Confidence 44555555555555555 899999999998876 668889999889999999 77999999999999854
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHH
Q 003872 658 PTDIATYNVVIQGLGKMG-RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA--------------GRFDEANMLFEQ 722 (790)
Q Consensus 658 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~ 722 (790)
+ +...|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+. +.++++.+.+.+
T Consensus 141 ~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 141 R-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp T-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 4 7888988888888889 8999999999998874 45778888777776653 567999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHhccCCHHH
Q 003872 723 MRTSGINPDVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 723 m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 750 (790)
+.... +-+...|..+...+.+.|+.++
T Consensus 218 ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 98742 2257788888888888777444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0062 Score=46.70 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444555555555555555444432 22333444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.009 Score=45.73 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444555555555555544432 22344444445555555555555555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.003 Score=49.87 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNE 651 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 651 (790)
++.++..+...|...|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444444444444433332 22233333333334444444444443333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0029 Score=53.83 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA-----------GRFDEANMLFEQMRTSGINPDVVTFNTLI 739 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 739 (790)
+++|+..|++.++.. +-+...|..+..+|... |++++|.+.|++..+ +.|+...|...+
T Consensus 62 ~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 346666666666542 22445555565555544 356666666666665 355554444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=50.82 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|++.++++++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666667777777777777666652 335666666666777777777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0043 Score=48.94 Aligned_cols=63 Identities=22% Similarity=0.113 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+...+..+...|...|++++|+..|+++++.. +.+...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555543 2233445555555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.012 Score=57.86 Aligned_cols=145 Identities=12% Similarity=-0.011 Sum_probs=95.0
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHH----hcC-C---HHHHHHHHHHHH
Q 003872 623 HPVNYTYNSMMSSFV--KKG---YFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLG----KMG-R---ADLASTILDKLM 688 (790)
Q Consensus 623 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~----~~g-~---~~~A~~~~~~~~ 688 (790)
+.+...|...+++.. ..+ +..+|..+|++.++. .|+ ...|..+..+|. ..+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 667778887776643 233 357788889988886 343 334433333332 111 1 111111222211
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 689 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.....+.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++..+. .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 111135678888888777777899999999999999864 78888888888999999999999999988865 56665
Q ss_pred chhHH
Q 003872 769 TDTTL 773 (790)
Q Consensus 769 t~~~l 773 (790)
||...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0055 Score=52.17 Aligned_cols=98 Identities=11% Similarity=-0.097 Sum_probs=70.5
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 130 IKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL----------GLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
.+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++. .+.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------------dP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------------DPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------------CTTC
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------------CcCc
Confidence 34566778888888887775 34777777777777777654 5999999999986 4556
Q ss_pred cchHHHHHHHHHhcc-----------chHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 003872 200 CVACNELLVALRKSD-----------RRSEFKQVFERLKEQKEFEFDIYGYNICI 243 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~li 243 (790)
..+|..+..+|...| ++++|++.|++..+ +.|+...|...+
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 778889999998765 67777777777766 445554444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.042 Score=54.03 Aligned_cols=63 Identities=14% Similarity=-0.023 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG 299 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 299 (790)
+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444443444444444444444444442 3444444444444444444444444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.32 E-value=1.4e-06 Score=86.43 Aligned_cols=234 Identities=9% Similarity=0.093 Sum_probs=164.0
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
..+..|+.+.++..+.++..+|++.| +... |+..|..+|.+..+.|.+++-+..+....+.. .++.+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 35688999999999999999888766 2222 45578899999999999999999987766543 3445557899
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
-+|++.++..+-.+.+ ..||..-...+..-+...|.++.|.-+|..+.. |..
T Consensus 124 ~ayAk~~rL~elEefl------------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~ak 175 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI------------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGR 175 (624)
T ss_dssp HHHHTSCSSSTTTSTT------------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTT
T ss_pred HHHHhhCcHHHHHHHH------------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHH
Confidence 9999999877754333 567777788888889999999988777665443 445
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
|...+.+.|++..|.+.-++ .-++.||..+..+|...+++.-|.-.--.+.-. +| ....++..|-..|.
T Consensus 176 LAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~ 244 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGY 244 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCC
Confidence 55666777888777653322 237788999999999999888776655444422 11 22345666778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 322 MDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLF 364 (790)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~ 364 (790)
+++.+.+++.-.... ......|+-|.-.|++- ++++..+-+
T Consensus 245 f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 245 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp CTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 888888887765321 24666777777766664 334443333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.019 Score=59.19 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCC-hHHHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGG--GYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT-----SG-INPD-VVTFN 736 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~ 736 (790)
.+.+.|++++|+.++++.++... +.|+ ..+++.+..+|...|++++|+.+++++.. .| -.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777776665321 1122 34666777777777777777777776663 11 1222 45677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH---hCCCCCCccc-hhHHHHHHHHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMML---DSGCTPNHVT-DTTLDFLGREID 781 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t-~~~l~~l~~~~~ 781 (790)
.|...|...|++++|+.++++.. +.-+.||+.. -.++..|..+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777888888888877777754 2334555533 233344444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=59.54 Aligned_cols=97 Identities=8% Similarity=-0.075 Sum_probs=70.0
Q ss_pred hcCCHHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC-CCC-hHHHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGG--GYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGI-NPD-VVTFNTLI 739 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~ 739 (790)
..|++++|+.++++.++... +.|+ ..+++.|..+|...|++++|..++++..+ .|- .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34788888888888766421 1222 35788888899999999999999988874 221 222 56788999
Q ss_pred HHHhccCCHHHHHHHHHHHHh---CCCCCCccc
Q 003872 740 EVNGKAGRLKEAHYFLKMMLD---SGCTPNHVT 769 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t 769 (790)
..|...|++++|+.++++..+ .-+.||+..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999988752 335566543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.087 Score=44.27 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCCHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTSGINP--DVVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 751 (790)
...+.+-|.+....+ .++..+...+..++++++ +++++..++++..+.. .| +...+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 445556666655543 356666667777777776 5557777777777653 23 345555666677777888888
Q ss_pred HHHHHHHHhCCCCCCccc
Q 003872 752 HYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 752 ~~~~~~m~~~~~~p~~~t 769 (790)
.++++.+++. .|+..-
T Consensus 91 ~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp HHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHhc--CCCCHH
Confidence 8888777754 666544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.022 Score=44.52 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVV-MYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
..+...|++++|...++++++.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555566666666666666552 23444 5556666666666666666666666653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.39 Score=45.23 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhcc-
Q 003872 677 ADLASTILDKLMKQGGGYLD---VVMYNTLINVLGKA-----GRFDEANMLFEQMRTSGINP--DVVTFNTLIEVNGKA- 745 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~- 745 (790)
...|...++++++.. |+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 578888889888864 55 66888888889884 9999999999999985 45 477888899999885
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 003872 746 GRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 746 g~~~~A~~~~~~m~~~~~~ 764 (790)
|+.++|.+.+++.+.....
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999976544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.59 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=37.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.-++.+...|+-++-.++...+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34455556666666666666643322 556666666666666666666666666666666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.66 Score=52.73 Aligned_cols=76 Identities=12% Similarity=-0.050 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003872 380 NILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKY 459 (790)
Q Consensus 380 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 459 (790)
..++..+.+.|..+.|+++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555556666666554421 10 1122334566666666664332 2556667777777777
Q ss_pred CCchHHHHHHHHHH
Q 003872 460 GRWDFTERLMKHIR 473 (790)
Q Consensus 460 g~~~~a~~~~~~~~ 473 (790)
|+++.|++.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777776666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.03 Score=57.70 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCC-HHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKF---CPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQG-----GGYLD-VVM 699 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~ 699 (790)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.++++++... ..-|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999999887541 2222 4578889999999999999999999876542 12233 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998874
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.042 Score=56.49 Aligned_cols=94 Identities=5% Similarity=-0.110 Sum_probs=60.3
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc----CC-CCCc-hhhH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ----KE-FEFD-IYGY 239 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~ 239 (790)
..|++++|+.++++.++........+ .+.-..+++.|...|...|++++|+.++++..+- .| -.|+ ..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS----NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh----chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 35788999999999888654322211 1112456777888888888888888887776541 11 2222 3556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHH
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
+.|...|...|++++|..++++..
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 667777777777777777666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.57 E-value=4 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003872 156 VYDSVLVSLVRKKQLGLAMSILFKLL 181 (790)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 181 (790)
.|..+++++.+.++.+.+.++|.++.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36777888888889999999998875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.3 Score=55.64 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS 319 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 319 (790)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555566666666665442111 1123344556666666664332 3455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 320 YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 320 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
++++.|.+.|..+.+ |..+...+...++.+...++.+.....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666665532 233334444455555544444444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=1 Score=38.84 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+..+. ..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHH
Confidence 4456789999999998766 36789999999999999999999999987653 34455567778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
.-.++-+....++ + ++.-..++...|+++++.++|.+.-. .|.. +-.....|.-+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g----~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE----D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc----c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 8777776666554 2 45556667788999999999865432 2211 11222357778888888876
Q ss_pred H
Q 003872 759 L 759 (790)
Q Consensus 759 ~ 759 (790)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.14 Score=39.17 Aligned_cols=65 Identities=8% Similarity=-0.044 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 590 DIDMVNTFLSIFLAKGK---LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
++..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444455444433322 455555555555443 334444444555555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.15 Score=39.51 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIA-TYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
...+...|++++|+..++++.+.. +.+.. .+..+..+|...|++++|.+.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334555666666666666666542 22445 56666666666666666666666666653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.27 Score=40.59 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYF------NQAWGVLNEMGEKFCPTDIA-TYNVVIQ------GLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~ 689 (790)
+-|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|...+. .+...+|+++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777777777 6777777777665 555421 0001110 11233666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 690 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
.. -+- ...|......-.+.|++..|++++.+....+.+
T Consensus 89 ~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred Hh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42 222 566666666666666677777766666665444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.35 Score=36.97 Aligned_cols=65 Identities=12% Similarity=-0.048 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 152 LSPNVYDSVLVSLVRKKQ---LGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 152 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
.++..+..+..++...++ .++|..+|++.++. .+.++.....+...+.+.|++++|+..|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666654443 56777777777665 344455555566666666666666666666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.26 Score=38.75 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTS------GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.-+..|...+...|+++.|...|+...+. +-.+...++..|..++.+.|++++|+.++++..+. .|+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 33445566666666666666666665542 01234556677777777777777777777777643 555533
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.45 Score=39.32 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=82.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhCCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHH
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKL------NLACKLFEIFTDMGVHPVNY-TYNSMMSS------FVKKGYFNQAWGVLNEM 652 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m 652 (790)
+.+.|++.|-.++...-+.|+. ++.+++|++.... ++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577999999999999999999 8888999988764 355431 22222221 23458999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 653 GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 653 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
++.+-+- ..+|.....--.+.|++..|.+++...+..+ .+ +...+.+.+
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k-~~~~le~a~ 135 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AV-PLEMLEIAL 135 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CB-CHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CC-cHHHHHHHH
Confidence 8763333 6777777777789999999999999999875 33 444444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.17 Score=42.58 Aligned_cols=83 Identities=14% Similarity=0.015 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 003872 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG---YFNQAWGVLNEMGEKFCPT--DIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 681 (790)
+..+.+-|.+..+.| .++..+...+.+++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666666 477788888888888887 5668888888888764 23 3445556666778889999999
Q ss_pred HHHHHHHHhC
Q 003872 682 TILDKLMKQG 691 (790)
Q Consensus 682 ~~~~~~~~~~ 691 (790)
+.++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9998888853
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.29 Score=38.47 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELG------TSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
+...+..+...+...|++..|..+|+...+.. ......++..|..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556667777777777777777777766541 1234566777777777888888888777777764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.51 Score=44.42 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-
Q 003872 642 FNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGK-----MGRADLASTILDKLMKQGGGYL--DVVMYNTLINVLGKA- 710 (790)
Q Consensus 642 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~- 710 (790)
...|...+++.++. .|+ -..|..+...|.+ -|+.++|.+.|++.++.. | +..++..+.+.++..
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhc
Confidence 34556666666654 344 3456666666766 377888888888877754 3 255556666767764
Q ss_pred CCHHHHHHHHHHHHhcCCC--CChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 711 GRFDEANMLFEQMRTSGIN--PDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|+.++|.+.+++..+.... |+....+.+.. ++|..++++..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~ 296 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQ 296 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhH
Confidence 7788888888877775444 55443333322 55555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.59 E-value=2 Score=37.03 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=21.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
...|+++.|.++.+++ .+...|..+.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444555555444433 13444555555555555555554444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.31 Score=39.31 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--ChHHHHHHHHHHhccC
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDE---ANMLFEQMRTSGINP--DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g 746 (790)
.....+..+.+-+.+....+ .++..+-..+..+++++.+..+ ++.+++.....+ .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 33445566677777666654 3677777778888888877665 888888877653 23 3445556777899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhHHHHH
Q 003872 747 RLKEAHYFLKMMLDSGCTPNHVTDTTLDFL 776 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l 776 (790)
++++|.++++.+++. .|+..--..|..+
T Consensus 89 ~Y~~A~~~~~~lL~~--eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT--EPQNNQAKELERL 116 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999999865 7876554444333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.43 Score=38.43 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQ---AWGVLNEMGEKFCP-TDIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 681 (790)
.+..+.+-|......| .++..+--.+.+++++..+... ++.++++..+.+.+ -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555666555555 4777777778888888877665 88888888776411 13334455666788888888888
Q ss_pred HHHHHHHHhC
Q 003872 682 TILDKLMKQG 691 (790)
Q Consensus 682 ~~~~~~~~~~ 691 (790)
+.++.+++..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888888864
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=2.5 Score=34.13 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=36.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (790)
+...+...++.+...|+-++..+++.++... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444455555555566666665665554322 245555555555566666666666666655555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.00095 Score=66.73 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=138.2
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEIL 142 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (790)
-..|+.-|-.+ .++..|..+|.+..+.|.+++....+.-.++..- ++..=+.|+-+|++.++..+-.+.+
T Consensus 70 v~eAIdsyIkA--------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 70 VKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CTTTTTSSCCC--------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred hHHHHHHHHhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH
Confidence 34466665443 3667888999999999999999999987666532 3344457899999999987765554
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHH
Q 003872 143 DYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQV 222 (790)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 222 (790)
. .|+..-...+..-|...|.++.|.-+|..+ .-|..|...+.+.|++..|.+.
T Consensus 140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------------------sN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------------SNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS--------------------CCCTTTSSSSSSCSGGGSSTTT
T ss_pred c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC--------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 2 255555677888888889988887665432 2344455556666776666443
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003872 223 FERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH 302 (790)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 302 (790)
-++ .-++.||-.+-.+|...+++.-|.-.--.+.-. +.....++..|-..|-+++...+++.-....
T Consensus 193 ArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 193 ARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 222 225667777777777777776665443333311 1122334556667777777777777765332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 303 EPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
......|+-|.-.|++- ++++..+.++.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 34556677666666654 44444444433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.26 E-value=1.4 Score=35.61 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 693 GYLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
..|+..+--.+..+++++.+ ..+++.+++...+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 46777777778888888765 456888888888764222356677788899999999999999999985 4888766
Q ss_pred hhHHHHHHH
Q 003872 770 DTTLDFLGR 778 (790)
Q Consensus 770 ~~~l~~l~~ 778 (790)
-..|..++.
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=4.6 Score=33.14 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccch
Q 003872 694 YLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTD 770 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 770 (790)
.|+..+--.+..++.++.+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++. .|+...-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 4666666666777777654 4456777777766432223445556667788888888888888888754 7766554
Q ss_pred hHHHHH
Q 003872 771 TTLDFL 776 (790)
Q Consensus 771 ~~l~~l 776 (790)
..|..+
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.10 E-value=3.4 Score=31.33 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
+.+.|.+--..+...-+.+ ++.+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +.....+|..+
T Consensus 7 t~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~ 85 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHH
Confidence 4455666666666555443 56777888888999999999999999999999999999999988765 22334457666
Q ss_pred HHH
Q 003872 161 LVS 163 (790)
Q Consensus 161 l~~ 163 (790)
++-
T Consensus 86 lqE 88 (109)
T 1v54_E 86 IQE 88 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.02 E-value=1.2 Score=48.74 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCChhh-H-HHHHHHHHhcCC-HHHHHHHHHHHhhc------CCCC-CH
Q 003872 593 MVNTFLSIFLAKGK-LNLACKLFEIFTDMGVHPVNYT-Y-NSMMSSFVKKGY-FNQAWGVLNEMGEK------FCPT-DI 661 (790)
Q Consensus 593 ~~~~li~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~-~-~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~~-~~ 661 (790)
....++..+...++ .+.|..+|+.+.+.. |.... + .+++..+.+.++ --+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 44556666666666 588999999998764 33322 2 334444434332 23455555554421 1111 21
Q ss_pred H----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 662 A----------TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 662 ~----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
. ....=..-|...|+++.|+++-++.... .+-+..+|..|..+|...|+++.|+-.+..+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1122233456789999999999999887 45568899999999999999999999888773
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.81 E-value=1.5 Score=47.95 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhC-----CCCC-CH----
Q 003872 630 NSMMSSFVKKGY-FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA-DLASTILDKLMKQG-----GGYL-DV---- 697 (790)
Q Consensus 630 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~-----~~~p-~~---- 697 (790)
..|+..+...++ .+.|..+++++.+.....+......++..+...++- -+|.+++.+.++.. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555566 588999999998874322222233344444444332 24555555544210 0111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 698 ------VMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 698 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.....=.+.|...|+++-|+++-++.... .| +..+|..|..+|.+.|+++.|+-.++.|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222244566789999999999999875 45 59999999999999999999999999985
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.58 E-value=5.2 Score=30.34 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
+.=+.++-++.+....+.|++.+..+.+.+|.|.+++.-|.++++..+.+ ..+....|.. +.-+...+++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHhhHHHHh
Confidence 44567777888888889999999999999999999999999999999754 3333444543 34455544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.27 E-value=32 Score=38.61 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=75.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH--HH
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN--SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ--GL 671 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~ 671 (790)
.+.-++.-.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+......++..+.+. ++..+-...+- ++
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGl 604 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHh
Confidence 33344456688888888887776542 33333322 2334567778887777788888764 23222222222 34
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF-DEANMLFEQMRTSGINPDVVTFNTLIEVN 742 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 742 (790)
...|+.+.+.++++.+.+. ..|....-.++.-+....|+. .+|..++..+.. .++..+-...+.++
T Consensus 605 I~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 4567766667777655543 234444334444444444443 577778888874 34544443333333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=4 Score=41.11 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHHHH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVTFNTL 738 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 738 (790)
...++..+...|+.++|...++.+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456777888999999999999988874 56888999999999999999999999998764 5999998775544
Q ss_pred HHHHhc
Q 003872 739 IEVNGK 744 (790)
Q Consensus 739 ~~~~~~ 744 (790)
-..+..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 444433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.12 E-value=5.9 Score=31.87 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDS 159 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (790)
.+.+.|.+-...+...-+.| +..+-++++...+..|++.+....+++|.+.+++..|+++|+-++.. +.+...+|..
T Consensus 49 Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y 127 (152)
T 2y69_E 49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPY 127 (152)
T ss_dssp CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHH
T ss_pred CcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 45566776677777665544 46677778888899999999999999999999999999999988765 2334556766
Q ss_pred HHHH
Q 003872 160 VLVS 163 (790)
Q Consensus 160 ll~~ 163 (790)
+++-
T Consensus 128 ~lqE 131 (152)
T 2y69_E 128 VIQE 131 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=2.1 Score=43.18 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCCccchhHHH
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML-----DSGCTPNHVTDTTLD 774 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~l~ 774 (790)
...++.++...|++++|...+..+... -+.+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677888999999999999998874 24467789999999999999999999999875 469999988755543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=37 Score=36.41 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=10.7
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 003872 600 IFLAKGKLNLACKLFEIFTD 619 (790)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~ 619 (790)
.+...|....|...+..+..
T Consensus 390 ~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 390 ELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCChhhHHHHHHHHHh
Confidence 34455666666555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.66 E-value=31 Score=35.36 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF 234 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (790)
++++.|++.+..+.+....... ..........++..+...++++...+.+..+.++.|..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d------~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk 90 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD------LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 90 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS------TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred CCHHHHHHHHHHHHHHhhhccc------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 4566666665555443321110 222344566677778888888888777777766555433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.15 E-value=9 Score=30.87 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 713 FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
.=+..+-++.+....+.|++.+..+.+.+|.|.+++.-|.++++..+.+ ..+....|.. |.-+-..+++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkPtl~EL 139 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhhHHHHh
Confidence 3356667777777889999999999999999999999999999999865 3444444653 35555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.38 E-value=18 Score=30.65 Aligned_cols=133 Identities=9% Similarity=-0.017 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEK-FCPTDI-------ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV- 698 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~- 698 (790)
++-.=+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++.+|...|++++.....-+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677788888888777765443 123331 2556667778888888888888888765432222111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
+...+ ........ ......+...---+..+|...|++++|+.+++. +++-..|-.+-..|+|
T Consensus 102 ~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-----Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 102 VRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-----IPSRQRTPKINMLLAN 163 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-----SCGGGCCHHHHHHHHH
T ss_pred ccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-----CCchhcCHHHHHHHHH
Confidence 11111 00000000 001222334444577889999999999998765 4555556555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.54 E-value=21 Score=41.99 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=101.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC---------------
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL--------------- 267 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------- 267 (790)
...++..+...+.++-+.++...... +....-.+..+|...|++++|.+.|++... |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 33466667777777777665544322 443444566677788888888888876421 11
Q ss_pred --------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 268 --------VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE----FTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 268 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..-..-|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...+++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 011234677888899999999988887766543212222 25788889999999999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 336 GLIPDTVVYNSLLNGMFKSRKVMEACQ 362 (790)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~~~~~~a~~ 362 (790)
..+ ......|+..+|..+..+.-..
T Consensus 968 ~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 968 PLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp SSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 443 4567778888888887766553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 790 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNY-TYNSMMSSFVKKGYFNQAWGVLNEMGEKFC 657
++ +G ++LA + ++ P Y ++ ++ +KG +A N + C
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLC 301
Query: 658 PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN 717
PT + N + + G + A + K ++ + ++ L +VL + G+ EA
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEAL 359
Query: 718 MLFEQMRTSGINPD 731
M +++ I+P
Sbjct: 360 MHYKEAIR--ISPT 371
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.41 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.2 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.07 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.05 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.96 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.92 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.84 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.64 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.38 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.78 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.57 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1e-18 Score=180.31 Aligned_cols=220 Identities=11% Similarity=-0.055 Sum_probs=92.1
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
+.+.|++++|.+.++++.+..+ -+...+..+..+|...|++++|...+++..+.. +-+..+|..+..+|.+.|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 3444555555555555544321 134444444455555555555555555544432 23344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
...+....+... .+..............+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc
Confidence 555555544321 122222222223333333333333333222221 112222333333333444444444444443333
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 003872 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKH 471 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (790)
... +...+..+...+...|+++.|...++...+.... +...+..+...+...|++++|...+.+
T Consensus 165 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 228 (388)
T d1w3ba_ 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred Ccc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHH
Confidence 211 2333444444444455555555555444433211 333444444444444444444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.1e-18 Score=178.05 Aligned_cols=384 Identities=12% Similarity=-0.030 Sum_probs=279.7
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG 285 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 285 (790)
+...+.+.|++++|++.++.+.+. .|-+...+..+...|.+.|++++|...|++..+.... +..++..+..+|...|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 456678899999999999999874 2346788899999999999999999999999887433 6788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFE 365 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~ 365 (790)
++++|...+....+.. +.+...+..........+....+............ ................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHH
Confidence 9999999999998764 44555555566666666666666666665554433 344455556666777888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 003872 366 KMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445 (790)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 445 (790)
...... +-+...+..+...+...|+++.|...+++..+.... +...+..+...+...|++++|...++........ +
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 877654 345677888889999999999999999998876433 5677888999999999999999999998876433 6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccc
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (790)
...+..+...+.+.|++++|...++++.+.
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------- 266 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------------------------------------------------- 266 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------------------
Confidence 677777888888888888888888877652
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcC
Q 003872 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKG 605 (790)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 605 (790)
.+.++.++..+...+...|
T Consensus 267 -------------------------------------------------------------~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 267 -------------------------------------------------------------QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp -------------------------------------------------------------CSSCHHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHHHHcC
Confidence 1224555666677777777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
++++|...++...... +.+...+..+...+...|++++|+..|++..+.. +.+..++..+...|.+.|++++|...|+
T Consensus 286 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777665554 4555666666666666777777777776666542 2245556666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 686 KLMKQGGGYLDVVMYNTLINVLGKAGR 712 (790)
Q Consensus 686 ~~~~~~~~~p~~~~~~~li~~~~~~g~ 712 (790)
++++.. +-+...|..+..+|.+.||
T Consensus 364 ~al~l~--P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIRIS--PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 665532 2234555666655555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.7e-11 Score=117.33 Aligned_cols=242 Identities=15% Similarity=0.028 Sum_probs=161.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
.....+.+.|++++|...|+.+.+.++ -+..+|..+..+|...|++++|...|.+..+..+ -+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 456678899999999999999999864 3788999999999999999999999999998763 47788999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCcc---cccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 169 QLGLAMSILFKLLEACNDNTADNSV---VESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
++++|.+.++++............. .....+.......+..+...+.+.++.+.|....+...-..+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999988753221100000 0000001111112233344556666666666665533333445566666666
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
+...|++++|...|++....... +...|..+..++...|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHH
Confidence 66777777777777766654322 45566666666777777777777776665542 33455666666666677777777
Q ss_pred HHHHHHHHH
Q 003872 326 MKIFSEMQY 334 (790)
Q Consensus 326 ~~~~~~m~~ 334 (790)
+..|++..+
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.3e-11 Score=116.27 Aligned_cols=268 Identities=12% Similarity=-0.003 Sum_probs=166.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 383 IDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 383 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
...+.+.|++++|+..|+++.+.... +..+|..+..++...|+++.|...+.+..+.... +...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 44455666666666666666665333 4555666666666667777777666666654322 456666666677777777
Q ss_pred hHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCccccc
Q 003872 463 DFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGS 542 (790)
Q Consensus 463 ~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (790)
++|.+.++.+..... +..........
T Consensus 104 ~~A~~~~~~~~~~~~--~~~~~~~~~~~---------------------------------------------------- 129 (323)
T d1fcha_ 104 RQACEILRDWLRYTP--AYAHLVTPAEE---------------------------------------------------- 129 (323)
T ss_dssp HHHHHHHHHHHHTST--TTGGGCC--------------------------------------------------------
T ss_pred cccccchhhHHHhcc--chHHHHHhhhh----------------------------------------------------
Confidence 777777766654221 10000000000
Q ss_pred ccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-
Q 003872 543 QLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG- 621 (790)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g- 621 (790)
. ....+.......+..+...+.+.+|...|....+..
T Consensus 130 ----~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p 167 (323)
T d1fcha_ 130 ----G--------------------------------------AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 167 (323)
T ss_dssp -----------------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ----h--------------------------------------hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 0 000000000111222334455667777777765542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 622 VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN 701 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 701 (790)
-..+...+..+...+...|++++|+..+++..... +.+...|..+...|...|++++|.+.|+++++.. +-+..+|.
T Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~ 244 (323)
T d1fcha_ 168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRY 244 (323)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHH
Confidence 13356677788888999999999999999988763 3467788888999999999999999999988864 34677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCChHHHHHHHHHHhccCCHHHH
Q 003872 702 TLINVLGKAGRFDEANMLFEQMRTS----------GINPDVVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 702 ~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~l~~~~~~~g~~~~A 751 (790)
.+..+|.+.|++++|...|++..+. ........|..+-.++...|+.+.+
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999999988762 0111123455565666555655433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.9e-08 Score=94.41 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG-QIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
.++.+...+.+.+..++|+.+++++.+.+.. +...|+....++...| ++++|+..++...+.... +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 3444445555566666666666666665332 4445555555555544 366666666666555333 556666666666
Q ss_pred HhcCCchHHHHHHHHHHh
Q 003872 457 HKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~ 474 (790)
.+.|++++|...++++.+
T Consensus 123 ~~l~~~~eAl~~~~kal~ 140 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN 140 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhh
Confidence 666666666666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=6.7e-08 Score=94.03 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=137.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.+...+..++..+.+.|+++.|..+|+.+.+.........|..++..+.+.|+++.|..+|+++.+.+.. +...|....
T Consensus 97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a 175 (308)
T d2onda1 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA 175 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3556777888888999999999999999987653333457899999999999999999999999987433 444444433
Q ss_pred HH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--hHHHHHHHHHHhc
Q 003872 669 QG-LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG-INPD--VVTFNTLIEVNGK 744 (790)
Q Consensus 669 ~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~ 744 (790)
.. +...|+.+.|..+|+.++.. .+.+...|..++..+.+.|++++|+.+|++..... ..|. ...|..++.--..
T Consensus 176 ~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 176 LMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 33 34568999999999999987 45578899999999999999999999999998743 4443 4578888888788
Q ss_pred cCCHHHHHHHHHHHHhC
Q 003872 745 AGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~ 761 (790)
.|+.+.+..+.+++.+.
T Consensus 254 ~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4e-07 Score=90.68 Aligned_cols=272 Identities=11% Similarity=-0.006 Sum_probs=129.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLS----PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV 201 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (790)
...+...|++++|++++++........+ ..++..+...+...|++++|...+++.++....... ......
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~ 92 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------WHYALW 92 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------hHHHHH
Confidence 3444455555566555555554322111 123444555555556666666665555543211000 011122
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhc---CCCC--C-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCC----CCCH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQ---KEFE--F-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL----VPDL 271 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~ 271 (790)
.+..+...+...|++..+...+...... .... + ....+..+...+...|+++.+...+........ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 3334444555556666665555544321 1111 1 123444555666667777777777766654321 1123
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHH
Q 003872 272 HTYNSLIQVLCVVGKVKDALIVWEELKGS--GHEPN----EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIP---DTV 342 (790)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~ 342 (790)
..+......+...++...+...+.+.... ..... ...+..+...+...++++.|...+.......... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 33444455556666666666666554321 00111 1223344445556666666666666554322111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQ----DGVRTS-CWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
.+..+...+...|++++|...++.... .+..|+ ..++..+...|...|++++|.+.+++..
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455556666666666666665542 122222 2344445555666666666666655543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1e-07 Score=92.72 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=135.1
Q ss_pred cchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKG-KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
|.+..+|+.....+...| ++++|+..++...+.. +-+..+|..+...+.+.|++++|+..++++++.. +.+...|..
T Consensus 74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~ 151 (315)
T d2h6fa1 74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQH 151 (315)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHH
Confidence 446677888888888776 4899999998887775 5677888888888999999999999999998863 346888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR------FDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
+...+.+.|++++|++.++++++.. +-+...|+.+..++.+.|. +++|...+.++.... +-+...|+.+..
T Consensus 152 ~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ 228 (315)
T d2h6fa1 152 RQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKG 228 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHH
Confidence 8899999999999999999998874 4467777777666665554 578888888887752 225666776666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Q 003872 741 VNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
.+...| .+++.+.++...+. .|+......+..++.
T Consensus 229 ll~~~~-~~~~~~~~~~~~~l--~~~~~~~~~~~~l~~ 263 (315)
T d2h6fa1 229 ILQDRG-LSKYPNLLNQLLDL--QPSHSSPYLIAFLVD 263 (315)
T ss_dssp HHTTTC-GGGCHHHHHHHHHH--TTTCCCHHHHHHHHH
T ss_pred HHHhcC-hHHHHHHHHHHHHh--CCCcCCHHHHHHHHH
Confidence 655444 57778888877653 555544444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.6e-07 Score=91.08 Aligned_cols=281 Identities=11% Similarity=-0.043 Sum_probs=200.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CC----HH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD----SETFKLLLEPCIKSGKIDFAIEILDYMEELGTS-LS----PN 155 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 155 (790)
+.......++...|++++|+.+++.........+ ..++..+...|...|++++|++.|++..+.... ++ ..
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 4444556777889999999999999887643222 246777888999999999999999988764211 12 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCC---C
Q 003872 156 VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKE---F 232 (790)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~ 232 (790)
.+..+...+...|++..+...+.+.+.......... .......+..+...+...|+++.+...+........ .
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ----LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch----hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 466777888999999999999998877543221100 111123455667788999999999999988876322 2
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCC--CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKG--LVPD----LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-- 304 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-- 304 (790)
......+......+...++...+...+.+..... .... ...+..+...+...|+++.|...+..........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 2234556667777888899999998887765421 1111 2345556677888999999999999876543222
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 305 -NEFTHRIIIQGCCKSYRMDDAMKIFSEMQY----NGLIPD-TVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 305 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
....+..+..++...|++++|...++.... .+..|+ ..++..+...|...|++++|.+.+++..+
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234566678889999999999999988763 333333 34677788899999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=4.2e-07 Score=88.21 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=107.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 251 DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFS 330 (790)
Q Consensus 251 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (790)
..++|..+|++..+...+.+...+...+..+...|+.+.|..+|+.+.+.........|...+..+.+.++.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34555566666554433334445555556666666666666666666554322223456666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CC
Q 003872 331 EMQYNGLIPDTVVYNSLLNG-MFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG-KF 408 (790)
Q Consensus 331 ~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~ 408 (790)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 66654322 23333322222 233466677777777766642 3345666666777777777777777777766653 22
Q ss_pred CC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 409 VD--GITFSIVVLQLCREGQIEEALRLVEEMEGR 440 (790)
Q Consensus 409 ~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 440 (790)
|+ ...|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 234666666656667777777777766553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=6.1e-08 Score=91.80 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
|.++.++..+..+|.+.|++++|+..|+...+.. +-+..++..+...|...|++++|...|+...+.. +.+......+
T Consensus 68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 145 (259)
T d1xnfa_ 68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWL 145 (259)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHH
Confidence 3467778888888999999999999998888765 4456778888888999999999999999888763 3344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCC-hHHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR----FDEANMLFEQMRTSGINPD-VVTFNTLIEVN 742 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 742 (790)
..++.+.+..+.+..+........ ++...++. +..+..... .+.+...+..... ..|+ ..+|..+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~ 219 (259)
T d1xnfa_ 146 YLAEQKLDEKQAKEVLKQHFEKSD---KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYY 219 (259)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSC---CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhccc---hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHH
Confidence 445556666555555555544432 22222322 222222211 2222222221111 1122 34677788999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCccch
Q 003872 743 GKAGRLKEAHYFLKMMLDSGCTPNHVTD 770 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 770 (790)
...|++++|+..+++.... .|+....
T Consensus 220 ~~~g~~~~A~~~~~~al~~--~p~~~~~ 245 (259)
T d1xnfa_ 220 LSLGDLDSATALFKLAVAN--NVHNFVE 245 (259)
T ss_dssp HHTTCHHHHHHHHHHHHTT--CCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 9999999999999998854 6665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=1.6e-07 Score=92.69 Aligned_cols=232 Identities=7% Similarity=-0.082 Sum_probs=153.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHHcCCHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNG--RAEAAYTLFCDLKKKGKFVDGITFS-IVVLQLCREGQIEEA 430 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a 430 (790)
.|.+++|+.+++...+.+ +-+...|..+..++...+ ++++|+..+..+...... +...+. .....+...+.++.|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 345677888888877754 335666666666666654 478888888888776433 444443 344566678889999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCC
Q 003872 431 LRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKG 510 (790)
Q Consensus 431 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 510 (790)
+..++.+.+.... +...|..+...+...|++++|...+....+.
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------------- 207 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----------------------------------- 207 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH-----------------------------------
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-----------------------------------
Confidence 9988888877544 7788888888888888877654333222110
Q ss_pred ChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcch
Q 003872 511 DLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFD 590 (790)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (790)
.
T Consensus 208 -------------------------------------------------------------------------------~ 208 (334)
T d1dcea1 208 -------------------------------------------------------------------------------L 208 (334)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
+.. ..+...+...+..+++...+....... +++...+..+...+...|+..+|...+.+..+.. +.+...+..+...
T Consensus 209 ~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~ 285 (334)
T d1dcea1 209 LKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRA 285 (334)
T ss_dssp HHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHH
Confidence 000 112233445566677777777776654 4556666677777788888888888888877653 2245667777888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLG 708 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 708 (790)
|...|+.++|.+.++++++.. |+ ...|..+...+.
T Consensus 286 ~~~~~~~~eA~~~~~~ai~ld---P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 286 LDPLLYEKETLQYFSTLKAVD---PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HCTGGGHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---cccHHHHHHHHHHHh
Confidence 888888899999988888753 53 445555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.3e-07 Score=89.46 Aligned_cols=96 Identities=16% Similarity=-0.013 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
+|..+..++.+.|++++|...|+......+ -++.+|..+..+|.+.|++++|++.|+++.+..+ .+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 444444555555555555555555555432 2455555555555555555555555555555432 23444555555555
Q ss_pred hcCChhHHHHHHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~ 183 (790)
..|+++.|...|++.++.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=8.9e-08 Score=94.54 Aligned_cols=267 Identities=8% Similarity=-0.051 Sum_probs=173.8
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHH----------HHhccchHHHHHHHHHHHhcCCCCCc
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVA----------LRKSDRRSEFKQVFERLKEQKEFEFD 235 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (790)
+.+..++|+.++.++++. .+.+...|+..-.. +...|.+++|+..++...+. .+-+
T Consensus 41 ~~~~~~~al~~~~~~l~~------------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~ 106 (334)
T d1dcea1 41 AGELDESVLELTSQILGA------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKS 106 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccHHHHHHHHHHHHH------------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCc
Confidence 334457889999988874 23333444432222 33455678888888888763 2335
Q ss_pred hhhHHHHHHHHhccC--ChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 236 IYGYNICIHAFGCWG--DLHTSLRLFKEMKEKGLVPDLHTYN-SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 236 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
...|..+..++...+ ++++|...++.+.+.... +...+. .....+...+..+.|+..++.+.+.. +-+...|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l 184 (334)
T d1dcea1 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 566666666665554 578899999988876332 444443 34466667888999999998888775 5567888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003872 313 IQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRA 392 (790)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 392 (790)
..++.+.|++++|...+....+. .|+ ...+...+...+..+++...+....... +++...+..+...+...++.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence 88888888887776555443321 111 1122333455566667777777766654 33445566667777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc-CHHHHHHHHHHHH
Q 003872 393 EAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVV-DLVTISSLLIGFH 457 (790)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~ 457 (790)
.+|...+.+.....+. +...+..+...+...|++++|...++.+.+. .| +...|..|...+.
T Consensus 259 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 259 LESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 8888888877766332 4556677777888888899999988888775 33 3445555544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.2e-05 Score=76.85 Aligned_cols=189 Identities=14% Similarity=0.016 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhc----CCCC-
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVK-KGYFNQAWGVLNEMGEK----FCPT- 659 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----~~~~- 659 (790)
...|..+..+|.+.|++++|...++...+. |. .....++..+...|.. .|++++|+..+++..+. +.++
T Consensus 77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~ 156 (290)
T d1qqea_ 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 456788899999999999999999876542 21 1113445566666644 69999999999987643 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC--
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----V-VMYNTLINVLGKAGRFDEANMLFEQMRTSGIN-PD-- 731 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-- 731 (790)
-..++..+...|...|++++|.++++++.......+. . ..+...+..+...|+++.|.+.+++..+.... ++
T Consensus 157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr 236 (290)
T d1qqea_ 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH
Confidence 1345777889999999999999999998876411111 1 22344555677889999999999998763211 11
Q ss_pred -hHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHhh
Q 003872 732 -VVTFNTLIEVNGK--AGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRL 783 (790)
Q Consensus 732 -~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~ 783 (790)
......++.++.. .+.+++|+..++++. +-|++--.+|...-+.+++.
T Consensus 237 e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~----~lD~~~~~~L~~~k~~le~~ 287 (290)
T d1qqea_ 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM----RLDKWKITILNKIKESIQQQ 287 (290)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhccc
Confidence 2344566666655 345888988887665 23443333444444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.6e-05 Score=70.02 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=94.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 676 (790)
-...+...|+++.|++.|+.+. +|++.+|..+...|...|++++|+..|++.++.. +.+...|..+..+|.+.|+
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence 3566778889999988887653 5677788888888999999999999999888874 3467788888888889999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 677 ADLASTILDKLMKQGGGY-------------LD-VVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~-------------p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
+++|.+.|++.+...... ++ ..++..+..++.+.|++++|.+.+......
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998888887542000 11 244555667778888888888888877764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.2e-05 Score=69.10 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR 712 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 712 (790)
...+...|++++|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhcc
Confidence 44677899999999999864 34678889999999999999999999999999985 5578899999999999999
Q ss_pred HHHHHHHHHHHHhcC------------CC--CC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 713 FDEANMLFEQMRTSG------------IN--PD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g------------~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+++|.+.|++..... .. ++ ..++..+..++.+.|++++|.+.++...+....|+.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence 999999999987531 11 11 255667888999999999999999999865444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=1.9e-05 Score=75.32 Aligned_cols=176 Identities=9% Similarity=-0.113 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CC----
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQED----DVV-VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTS-LS---- 153 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 153 (790)
...|......|...|++++|...|..+... +.. .-..+|..+..+|.+.|++++|++.+++....... .+
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 456777888899999999999999887663 111 12367888999999999999999999987764111 11
Q ss_pred HHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 154 PNVYDSVLVSLVR-KKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 154 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
..++..+...|.. .|+++.|...+.+..+....... ..-...++..+...+...|++++|.+.|+.+......
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 2346666666644 59999999999887664321100 0001234555666666677777777776666542111
Q ss_pred CC----ch-hhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 233 EF----DI-YGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 233 ~~----~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
.+ .. ..+...+..+...|+++.|.+.+++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 00 11223333444556666666666665544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.1e-05 Score=66.93 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=45.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 676 (790)
....|.+.|++++|...|.+.++.. +.+...|..+...|...|++++|+..|+++++.. +.+...|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3444455555555555555555443 3344445555555555555555555555554432 2234445555555555555
Q ss_pred HHHHHHHHHHHHHh
Q 003872 677 ADLASTILDKLMKQ 690 (790)
Q Consensus 677 ~~~A~~~~~~~~~~ 690 (790)
+++|...++++...
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.6e-05 Score=61.28 Aligned_cols=89 Identities=18% Similarity=0.055 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF 713 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 713 (790)
..+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCH
Confidence 34445555555555555555442 2344455555555555555555555555555542 33455555555555555555
Q ss_pred HHHHHHHHHHHh
Q 003872 714 DEANMLFEQMRT 725 (790)
Q Consensus 714 ~~A~~~~~~m~~ 725 (790)
++|...|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=5.1e-05 Score=60.35 Aligned_cols=95 Identities=15% Similarity=0.022 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.+.+.+.|++++|+.+|+++++.. +-+...|..+..+|.+.|++++|...+.+....+ +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 344556666666666666666653 4455566666666666666666666666666542 2245566666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCc
Q 003872 748 LKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 748 ~~~A~~~~~~m~~~~~~p~~ 767 (790)
+++|+..+++..+. .|+.
T Consensus 87 ~~~A~~~~~~a~~~--~p~~ 104 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANN 104 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHHHHHh--CCCC
Confidence 66666666666643 4444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1e-05 Score=64.73 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 003872 665 NVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSGINPD-VVTFNTLIE 740 (790)
Q Consensus 665 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 740 (790)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.++++ +++|+.+|+++...+..|+ ..+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 356777788889999999999988874 5577788888888877554 4568888888876543333 246778888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCccch
Q 003872 741 VNGKAGRLKEAHYFLKMMLDSGCTPNHVTD 770 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 770 (790)
+|.+.|++++|++.++++++. .|+....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~--~P~~~~A 108 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT--EPQNNQA 108 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--CcCCHHH
Confidence 999999999999999999864 6776553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.09 E-value=0.0023 Score=59.33 Aligned_cols=148 Identities=14% Similarity=-0.011 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCC
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFV----KKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----MGR 676 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 676 (790)
.+.+.|...++...+.|. +. ....+...+. .......+...+...... .+...+..|...|.. ..+
T Consensus 88 ~~~~~a~~~~~~a~~~g~-~~--a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKY-AE--GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCHHHHHHHHHHHHHTTC-HH--HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred hhhHHHHHHHhhhhhhhh-hh--HHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccc
Confidence 355666666666666552 11 1222222222 234456666666665554 355666666666654 456
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRL 748 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 748 (790)
...+...++...+.+ +......+...|.. ..++++|..+|++..+.| ++..+..|...|.+ ..+.
T Consensus 162 ~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 162 LKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred cccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 677777777776654 55555555555554 467888888888887765 45556666666654 3367
Q ss_pred HHHHHHHHHHHhCCCCC
Q 003872 749 KEAHYFLKMMLDSGCTP 765 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p 765 (790)
++|.+++++..+.|..+
T Consensus 235 ~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 235 KQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHCcCHH
Confidence 88888888887776444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.8e-05 Score=64.12 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=43.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (790)
...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++++. .+.+..+|..
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------------~p~~~~a~~~ 83 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------------DKKYIKGYYR 83 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------------cccchHHHHH
Confidence 334445555555555555555543 224444555555555555555555555555443 2223334444
Q ss_pred HHHHHHhccchHHHHHHHHHHHh
Q 003872 206 LLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
+..++...|++++|...++....
T Consensus 84 ~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 84 RAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=3e-05 Score=69.15 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=84.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
|+...+......|.+.|++++|+..|.++++.. +.+...|+.+..+|.+.|++++|+..|+++++.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 667777788889999999999999999988874 4578889999999999999999999999988753 3357788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 003872 704 INVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~ 725 (790)
..+|.+.|++++|...|+++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=4.5e-05 Score=67.99 Aligned_cols=100 Identities=13% Similarity=-0.054 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
++...+...+..|.+.|++++|+..|+..++.. +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667788999999999999999999988876 6788889999999999999999999999999863 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 003872 669 QGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.+|...|++++|...|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.3e-05 Score=61.71 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=59.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY---FNQAWGVLNEMGEKFCPTD-IATYNVVIQGL 671 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~ 671 (790)
.+++.+...+++++|.+.|+...+.+ +.++.++..+..++.+.++ +++|+.+++++......|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666677777777777776665 5566666666666665443 3457777777666533332 23555666677
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 003872 672 GKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~ 690 (790)
.+.|++++|++.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 7777777777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.85 E-value=6.7e-05 Score=59.06 Aligned_cols=87 Identities=18% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA 677 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 677 (790)
...+.+.|++++|...|+..++.. +-+...|..+..++.+.|++++|+..|++.++.. +.+...+..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334444555555555555554443 2244444555555555555555555555544432 22344444455555555555
Q ss_pred HHHHHHHHH
Q 003872 678 DLASTILDK 686 (790)
Q Consensus 678 ~~A~~~~~~ 686 (790)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.84 E-value=9.3e-05 Score=58.18 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR 712 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 712 (790)
...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCC
Confidence 344555555555555555555542 2245555555555555555555555555555542 3345555555555555555
Q ss_pred HHHHHHHHHHH
Q 003872 713 FDEANMLFEQM 723 (790)
Q Consensus 713 ~~~A~~~~~~m 723 (790)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.79 E-value=0.014 Score=53.76 Aligned_cols=223 Identities=10% Similarity=-0.125 Sum_probs=125.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHRIII 313 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 313 (790)
.+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 34445555555666666666666666654 44444445555544 445666666666665543 222233333
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003872 314 QGCCK----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF----KSRKVMEACQLFEKMVQDGVRTSCWTHNILIDG 385 (790)
Q Consensus 314 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~ 385 (790)
..+.. ..+.+.|...++...+.|. ......+...+. .......+...+......+ +...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 33322 3456667777766666542 222222222222 2344556666666655543 45556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 386 LFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 386 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
+.. ..+...+..+++...+.| +......+...+.. ..+++.|..+|....+.| ++..+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 654 345666777777666654 44444445444444 457888888888887776 4556666666665
Q ss_pred h----cCCchHHHHHHHHHHhCCCc
Q 003872 458 K----YGRWDFTERLMKHIRDGNLV 478 (790)
Q Consensus 458 ~----~g~~~~a~~~~~~~~~~~~~ 478 (790)
. ..+.++|.+.|++..+.|..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 4 33778888888888775543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.011 Score=55.75 Aligned_cols=137 Identities=7% Similarity=-0.011 Sum_probs=76.9
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
.||..-...+...+.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHH
Confidence 34444445566667777888888877775543 5667777777788877777665441 5667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
+...+.+......+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 77777766655443 2222233445555566777777777777777777766532 2345666777777776643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00051 Score=58.64 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-C-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-D-------------IATYNVVIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..+......+.+.|++++|+..|.+.++..... . ..+|+.+..+|.+.|++++|+..++.+++..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 445556667788888888888888776541110 0 1233334444555555555555555555542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+.+...|..+..+|...|++++|...|++..+
T Consensus 93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22444555555555555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.0091 Score=56.33 Aligned_cols=293 Identities=8% Similarity=0.018 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
|+..-...+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~---------------- 66 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA---------------- 66 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH----------------
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc----------------
Confidence 455555667777888888888888887543 2667777788888888887776543
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
.+..+|..+...+.+.....-+ .+.. .....+......++..|-..|.+++...+++..... -..+...++.
T Consensus 67 -~~~~~~k~~~~~l~~~~e~~la-----~i~~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~ 138 (336)
T d1b89a_ 67 -NSTRTWKEVCFACVDGKEFRLA-----QMCG-LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTE 138 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHH-----HHTT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHH
T ss_pred -CCHHHHHHHHHHHHhCcHHHHH-----HHHH-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHH
Confidence 1334666666666665544332 1111 222334445566777777778888887777766533 2345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK 356 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 356 (790)
++..|++.+ .++..+.+.... +..-...++..|-+.+-+.++.-++..+... + .....++ .+..+
T Consensus 139 L~~lyak~~-~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~----~-~A~~~~i---~~~~~ 203 (336)
T d1b89a_ 139 LAILYSKFK-PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY----D-NAIITMM---NHPTD 203 (336)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH----H-HHHHHHH---HSTTT
T ss_pred HHHHHHHhC-hHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCH----H-HHHHHHH---Hcchh
Confidence 777777654 233333332221 1122234456666666666665555544321 0 0111111 11111
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEE 436 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (790)
........+...+. .|+..+-.++..|.... .+-...++..+... + | -..++..+-+.+++.....+++.
T Consensus 204 ~~~~~~f~e~~~k~---~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 204 AWKEGQFKDIITKV---ANVELYYRAIQFYLEFK-PLLLNDLLMVLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRS 273 (336)
T ss_dssp TCCHHHHHHHHHHC---SSTHHHHHHHHHHHHHC-GGGHHHHHHHHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHH
T ss_pred hhhHHHHHHHHHcc---CChHHHHHHHHHHHHcC-HHHHHHHHHHhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHH
Confidence 11111111112221 13333444444444321 22222222222221 1 1 23455556667777777788877
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHH
Q 003872 437 MEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMK 470 (790)
Q Consensus 437 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (790)
....| +....+++...|...++++.-++..+
T Consensus 274 v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 274 VQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 77665 34688899999999999766555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00031 Score=56.67 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----hHHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--INPD----VVTFNTLI 739 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l~ 739 (790)
.+...|...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|.+.++++.+.. .... ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34455666666666666666666653 3455666666666666666666666666665410 0000 13455566
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 003872 740 EVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..+...+++++|++++++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666666777777777766654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00052 Score=55.28 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-----VVMYNTLIN 705 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~li~ 705 (790)
.+...+...|++++|+..|.+.++.. +.+...+..+..+|.+.|++++|+..++++++...-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666653 235566666666666666666666666666553211111 134555556
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 003872 706 VLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+...+++++|...|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666677777777766654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.64 E-value=0.00097 Score=55.62 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..-...+.+.|++.+|+..|.++++.-.... ........ ..... ....+|+.+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~---~~~~~-----~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILL---DKKKN-----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHH---HHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHH---Hhhhh-----HHHHHHhhHHHH
Confidence 4455566667777888888877777765311000 00000000 00000 123466778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 707 LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
|.+.|++++|+..+++..... +.+..+|..+..++...|++++|+..|++..+. .|+...
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~ 136 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLD 136 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 889999999999999888752 335788889999999999999999999998864 566544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.0013 Score=55.99 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPV-------------NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKF 656 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 656 (790)
...+...+..+.+.|++++|+..|...++.-. .+. ..+|+-+..+|.+.|++++|+..++..++..
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 44455666777777788888877777654311 110 1334455666777788888888777777763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 657 CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 657 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
+.++..+..+..+|...|++++|...|+++++..
T Consensus 93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3366777777777777888888888887777753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.50 E-value=0.0018 Score=53.97 Aligned_cols=118 Identities=15% Similarity=-0.018 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
...+..-+..+.+.|++.+|+..|...+..- +.... .. +.... ..... ....+|+.+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~-~~~~~--~~~~~----~~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WD-DQILL--DKKKN----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CC-CHHHH--HHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hh-hHHHH--Hhhhh----HHHHHHhhHHHH
Confidence 4456677889999999999999999887542 11000 00 00000 00000 123466778888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
|.+.|++++|++.++.+++.. +.+..+|..+..++...|++++|...|++..+. .|+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n 134 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 134 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred HHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 889999999999999988874 557788888999999999999999999988874 4543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.00097 Score=56.84 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+......+.+.|++++|+..|.++++. .............. .. -+.+...|..+..+
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~--~~~~~~~~~nla~~ 86 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KL--QPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------Hh--ChhhHHHHHHHHHH
Confidence 34555666778888888888888876642 00000001111100 00 01244567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHHHHhhhh
Q 003872 707 LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT-DTTLDFLGREIDRLKD 785 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~l~~l~~~~~~~~~ 785 (790)
+.+.|++++|+..++++.+.. +.+...|..+..++.+.|++++|++.+++..+. .|+... ...|..+...+.+.++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999752 235788999999999999999999999999864 555433 4555566666666666
Q ss_pred hhh
Q 003872 786 QNR 788 (790)
Q Consensus 786 ~~~ 788 (790)
.+|
T Consensus 164 ~~k 166 (169)
T d1ihga1 164 KEK 166 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=0.0012 Score=56.63 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.........|++++|...|.+.+..- +... +........+...-..+... ....+..+..++...
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHC
Confidence 34456778899999999999888751 1110 00001111111111111111 234566777888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCCccchhH
Q 003872 711 GRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML-----DSGCTPNHVTDTT 772 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~ 772 (790)
|++++|...++++.... +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...|..+
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 88888888888888742 2357778888888888888888888888864 3588887765443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0029 Score=54.08 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=92.4
Q ss_pred hHHHHH---HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVN---TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
|...|. .........|++++|...|....+.- +.... .......-+...-..+... ....+..
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~ 72 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHH
Confidence 444444 44567788999999999999988752 11100 0001101111111111111 2346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVTFNT 737 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 737 (790)
+...+...|++++|+..++.+++.. +-+...|..++.+|...|+.++|++.|+++.+ .|+.|...+-..
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 8899999999999999999999984 56889999999999999999999999999854 699999876433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.38 E-value=0.0026 Score=53.92 Aligned_cols=109 Identities=10% Similarity=-0.022 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEK---FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
...+......+.+.|++.+|+..|.+.+.. ....+... ....+.+ ...+|+.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~--------~~~~~~N 69 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF--------LLAAFLN 69 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh--------HHHHHHh
Confidence 345566667777888888888888776542 11111100 0000000 1122333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 703 LINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
+..+|.+.|++++|+..+++..... +.+...|..+..++...|++++|++.++++.+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555431 22344555555555555555555555555553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=5.9e-05 Score=77.85 Aligned_cols=228 Identities=10% Similarity=-0.014 Sum_probs=115.1
Q ss_pred hhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003872 65 KKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDY 144 (790)
Q Consensus 65 ~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 144 (790)
.|.++|+.+.+.+|++ +.++..+..++...+++++| ++.+...++. -...++. ...+.+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~-e~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKV-EQDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTH-HHHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---HHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhH-HHHHHH-HHHHHHHHHHHH
Confidence 4667777776666532 23344445555555666554 5555543311 0111111 111111 124556677766
Q ss_pred HHHhCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHH
Q 003872 145 MEELGTSLSPNVYDSVLVS--LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQV 222 (790)
Q Consensus 145 ~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 222 (790)
..+....++..-....+.. ....+.++.++..+...... .+++...+..+...+.+.|+.++|...
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l------------~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV------------DLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------------
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------ChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 6654333332222222222 22234455555444443332 344556677777788888888888877
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003872 223 FERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH 302 (790)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 302 (790)
+...... . ...++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+.....
T Consensus 143 ~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~- 216 (497)
T d1ya0a1 143 QSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK- 216 (497)
T ss_dssp CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred HHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 7665431 0 1346677888888889999999999998877432 56788889999999999999999998888765
Q ss_pred CCCHHHHHHHHHHHHhc
Q 003872 303 EPNEFTHRIIIQGCCKS 319 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~~ 319 (790)
+|-..++..|...+.+.
T Consensus 217 ~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKA 233 (497)
T ss_dssp BCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56777788887776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.003 Score=53.63 Aligned_cols=127 Identities=11% Similarity=0.013 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
+......+.+.|++++|+..|.+.++. .............. .. -+.+...|..+..+|.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHh
Confidence 345677788899999999999876532 00000001111110 00 01134455666677777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhc
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGK 744 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 744 (790)
.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++..+. .| +..++..+..+..+
T Consensus 90 ~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQK 157 (169)
T ss_dssp TTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 788888888777777653 446667777777777778888888887777764 33 34445555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.19 E-value=0.0037 Score=52.96 Aligned_cols=145 Identities=13% Similarity=0.037 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+...+..+.+.|++++|...|+..+..- +... ....+. ......+ ...+|+.+..
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~~~-----------~~~~~~-~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEY-----------GLSEKE-SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCC-----------SCCHHH-HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhh-----------ccchhh-hhhcchh-------HHHHHHhHHH
Confidence 45677788999999999999999998765420 0000 000000 0111111 1235556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 748 (790)
+|.+.|++++|+..++.+++.. +.+...|..+..+|...|++++|...|+++... .|+ ..++..+.....+.+..
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhH
Confidence 7888888888888888888874 557778888888888888888888888888874 444 44444444443333332
Q ss_pred -HHHHHHHHHHH
Q 003872 749 -KEAHYFLKMML 759 (790)
Q Consensus 749 -~~A~~~~~~m~ 759 (790)
+...+++.+|.
T Consensus 149 ~e~~kk~~~~~f 160 (168)
T d1kt1a1 149 NERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 23444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.07 E-value=0.0022 Score=52.70 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG-----------RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 744 (790)
.+++|+..|+++++.. +.+..+|..+..+|...| .+++|.+.|++..+ +.|+...|...+..+
T Consensus 56 ~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~-- 129 (145)
T d1zu2a1 56 MIQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT-- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc--chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH--
Confidence 3455666666666653 334555655655554433 24566666666665 355555444333332
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 003872 745 AGRLKEAHYFLKMMLDSG 762 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~ 762 (790)
..|.+++.+..+.|
T Consensus 130 ----~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 ----AKAPQLHAEAYKQG 143 (145)
T ss_dssp ----HTHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHHh
Confidence 34455555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.06 E-value=0.00047 Score=63.40 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=73.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 716 (790)
.+.|++++|+..+++.++. -+.|...+..+...|+..|++++|.+.++...+.. +-+...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 4568888888888888876 34477788888888888888888888888887753 22334444444333322222222
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 717 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..-.......+-.++...+......+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110001111223344445556677788888888888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.05 E-value=0.0059 Score=50.83 Aligned_cols=93 Identities=19% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCC-
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLD----------VVMYNTLINVLGKAGRFDEANMLFEQMRTS-----GINPD- 731 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~- 731 (790)
...+...|++++|++.|++.++.....|+ ...|+.+..+|...|++++|...+++.... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455667777777777777664322222 356777888888888888888888877641 12222
Q ss_pred ----hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 732 ----VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 732 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
...|+.+..+|...|++++|++.+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788899999999999999998763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00059 Score=70.10 Aligned_cols=227 Identities=7% Similarity=-0.062 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHhccC
Q 003872 172 LAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI-YGYNICIHAFGCWG 250 (790)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g 250 (790)
+|.+.|+++.+.. +.....+..+...+...+++++| |+++... .|+. ..++.....+ ..
T Consensus 4 eA~q~~~qA~~l~------------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~Lw--~~ 63 (497)
T d1ya0a1 4 QSAQYLRQAEVLK------------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQDLW--NH 63 (497)
T ss_dssp HHHHHHHHHHHHH------------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHHHHH--HH
T ss_pred HHHHHHHHHHHcC------------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHHHHH--HH
Confidence 5778888887753 22234445556667777777765 5555431 1211 1111111111 11
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 251 DLHTSLRLFKEMKEKGLVPDLHTYNSLIQV--LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI 328 (790)
Q Consensus 251 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (790)
.+..+.+.++...+....++..-....+.. ....+.++.++..+....+.. +++...+..+...+.+.++.+.|...
T Consensus 64 ~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 64 AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 245566677776655433443322222222 222344555555554443322 33455667777778888888888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003872 329 FSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKF 408 (790)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (790)
+....... ....+..+...+...+++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... .
T Consensus 143 ~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~ 217 (497)
T d1ya0a1 143 QSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F 217 (497)
T ss_dssp CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred HHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence 76655421 13466777888889999999999999998864 3456889999999999999999999999988764 3
Q ss_pred CCHhhHHHHHHHHHHc
Q 003872 409 VDGITFSIVVLQLCRE 424 (790)
Q Consensus 409 ~~~~~~~~ll~~~~~~ 424 (790)
|-..++..|...+.+.
T Consensus 218 ~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 218 PFPAASTNLQKALSKA 233 (497)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4677777777776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.0032 Score=51.66 Aligned_cols=74 Identities=8% Similarity=-0.171 Sum_probs=52.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 129 CIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK----------KQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
|-+.+.+++|++.|+...+.. |.++.++..+..++... +.+++|+..|+++++. .+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------------~P~ 73 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------------DPK 73 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------------CTT
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------------cch
Confidence 445566788888888888775 34667777777777643 4457788889988886 455
Q ss_pred CcchHHHHHHHHHhccc
Q 003872 199 GCVACNELLVALRKSDR 215 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~ 215 (790)
+..+|..+..+|...|+
T Consensus 74 ~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 74 KDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHccc
Confidence 67788888777766553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.97 E-value=0.00099 Score=61.18 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
+.|++++|+..+++.++.. +.+...+..+...|+..|++++|...|++..+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555555555543 23445555555555555555555555555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.41 E-value=0.007 Score=50.37 Aligned_cols=108 Identities=13% Similarity=0.030 Sum_probs=54.9
Q ss_pred HHHHH--HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc----
Q 003872 156 VYDSV--LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---- 229 (790)
Q Consensus 156 ~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 229 (790)
+|..+ ...+...|++++|+..|.+.++...................+|+.+..+|.+.|++++|.+.++.....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 344556677888888888777754332211100000011245666677777777777777666665531
Q ss_pred CCCCCc-----hhhHHHHHHHHhccCChHHHHHHHHHHH
Q 003872 230 KEFEFD-----IYGYNICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 230 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
....++ ...++.+..+|...|++++|...|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 1133444555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.033 Score=41.25 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 702 TLINVLGKAGRFDEANMLFEQMRTS-----GINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 702 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
-+...+.+.|++++|...|++..+. ...++ ..+++.|..++.+.|++++|+..++++++. .|+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~ 79 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCC
Confidence 4455566666666666666665531 11111 345666666677777777777777766643 4554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.94 E-value=0.21 Score=37.56 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
..-++.+.+.|+-++-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.++-+.|++
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344555666677777777777666655 666666677777777777777777777777766653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.037 Score=40.95 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELG-----TSL-SPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
+...+-.+...+.+.|++.+|+.+|++..+.. ..+ ...++..|..++.+.|++++|+..++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444456666667777777777777665541 111 1345677777777777777777777777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.75 E-value=0.14 Score=40.57 Aligned_cols=110 Identities=12% Similarity=-0.059 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----MGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 681 (790)
++++|...|.+..+.|. + ..+..|. .....+.++|+.++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56666666666666552 1 2222221 223345555555555555543 23333333333332 23445555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 003872 682 TILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSG 727 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 727 (790)
++|++..+.+ +......|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555554443 23333333333332 234445555555544433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.2 Score=39.59 Aligned_cols=113 Identities=10% Similarity=-0.117 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 003872 640 GYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDE 715 (790)
Q Consensus 640 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 715 (790)
.|+++|+.+|++..+.|.. .....|. .....+.++|.+++++..+.+ +......|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHH
Confidence 3688999999999887643 2222332 344578999999999998876 56666666666654 467899
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC
Q 003872 716 ANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 764 (790)
|.++|++..+.| +......|...|.+ ..+.++|.+++++.-+.|..
T Consensus 78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 999999999876 44555566666655 46899999999999887743
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.76 E-value=0.96 Score=33.99 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=40.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLI 338 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 338 (790)
+...+...++.+...|+-++..++++++.+.+ ++++...-.+..+|.+-|...++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 34445555666666666666666666655544 566666666666666666666666666666666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.65 Score=35.34 Aligned_cols=75 Identities=9% Similarity=-0.035 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 693 GYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
..|...+--.+..+++++. ++++++.++++....+ +.+ ...+-.|.-+|.+.|++++|.++++.+++. .|+..
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 3466667667777787764 4568888888888642 223 356677888899999999999999999854 77765
Q ss_pred ch
Q 003872 769 TD 770 (790)
Q Consensus 769 t~ 770 (790)
--
T Consensus 108 qA 109 (124)
T d2pqrb1 108 QV 109 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.78 E-value=1.2 Score=31.72 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
-+.|.+--..+....+.+ ++.+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +..+...|..++
T Consensus 4 ~EeF~aRy~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 4 DEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 345555556666655443 56677888888899999999999999999999999999999988765 223445666655
Q ss_pred HH
Q 003872 162 VS 163 (790)
Q Consensus 162 ~~ 163 (790)
+-
T Consensus 83 qe 84 (105)
T d1v54e_ 83 QE 84 (105)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.64 E-value=1.9 Score=30.67 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
+.=++.+-+..+....+.|++.+..+.+.||.|.+++.-|.++++..+.+ ..++...|.. |.-+-..+++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqelkptl~EL 92 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNEL 92 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhhHHHHh
Confidence 44567777888888889999999999999999999999999999998854 3445556654 35555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.62 E-value=4.8 Score=30.33 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 116 VVDSETFKLLLEPCIKS---GKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
.++..+--....++++. .+.++++.+|+.+.+.+.....+.+-.|..+|.+.|++++|...++.+++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45566655566666654 345688888888877542222356777888888888888888888888875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=15 Score=35.39 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
.-.+......+++..+...+..+..... ....-.-=+.+++...|+.+.|...|...... ++ |..++.+- +.
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~L 360 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RI 360 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HT
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-Hc
Confidence 3444555666788888777777653321 11222223556777788888888888877642 33 33322211 11
Q ss_pred CCH-HHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 675 GRA-DLASTILDKLMKQGGGYLD-V----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 675 g~~-~~A~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
|.. .-.. ..-...+. . ... .-+..+...|...+|.+.|..+... .+......+.....+.|.+
T Consensus 361 g~~~~~~~-------~~~~~~~~~~~~~~~~~-~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 361 GEEYELKI-------DKAPQNVDSALTQGPEM-ARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp TCCCCCCC-------CCCCSCCCCHHHHSHHH-HHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCc-------CCCCccHHHhhhcChHH-HHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCh
Confidence 110 0000 00000000 0 011 2245567889999999999888753 2455666788888999999
Q ss_pred HHHHHHHHHHH
Q 003872 749 KEAHYFLKMML 759 (790)
Q Consensus 749 ~~A~~~~~~m~ 759 (790)
+.|+....+..
T Consensus 430 ~~aI~a~~~~~ 440 (450)
T d1qsaa1 430 DLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHHH
Confidence 99998777664
|